viruses Article Experimental Infection and Genetic Characterization of Two Different Capripox Virus Isolates in Small Ruminants Janika Wolff , Jacqueline King, Tom Moritz, Anne Pohlmann , Donata Hoffmann , Martin Beer and Bernd Hoffmann * Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, D-17493 Greifswald-Insel Riems, Germany; janika.wolff@fli.de (J.W.); jacqueline.king@fli.de (J.K.);
[email protected] (T.M.); anne.pohlmann@fli.de (A.P.); donata.hoffmann@fli.de (D.H.); martin.beer@fli.de (M.B.) * Correspondence: Bernd.Hoffmann@fli.de; Tel.: +49-3835-17-1506 Received: 8 September 2020; Accepted: 26 September 2020; Published: 28 September 2020 Abstract: Capripox viruses, with their members “lumpy skin disease virus (LSDV)”, “goatpox virus (GTPV)” and “sheeppox virus (SPPV)”, are described as the most serious pox diseases of production animals. A GTPV isolate and a SPPV isolate were sequenced in a combined approach using nanopore MinION sequencing to obtain long reads and Illumina high throughput sequencing for short precise reads to gain full-length high-quality genome sequences. Concomitantly, sheep and goats were inoculated with SPPV and GTPV strains, respectively. During the animal trial, varying infection routes were compared: a combined intravenous and subcutaneous infection, an only intranasal infection, and the contact infection between naïve and inoculated animals. Sheep inoculated with SPPV showed no clinical signs, only a very small number of genome-positive samples and a low-level antibody reaction. In contrast, all GTPV inoculated or in-contact goats developed severe clinical signs with high viral genome loads observed in all tested matrices.