An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. Ecoo157Cyc: Escherichia coli O157:H7 str. EDL933 Cellular Overview Connections between pathways are omitted for legibility. Author: Jonathan Wagg, SRI 4-amino-4- an oxidized phosphate deoxy-α-L- an oxidized c-type an oxidized an apo-[c-type arabinopyranosyl partially c-type cytochrome c-type cys selenite cytochrome] selenite ditrans,octacis deacetylated cytochrome cytochrome L,L-homocystine lys ethidium D-mannopyranose 6-phosphate phosphate selenate a reduced glutathione D-glucosamine glu selenate arg magnesium hydrogenphosphate with reduced L,L-homocystine β putrescine nalidixate γ-butyrobetaine putrescine L-ornithine sulfadiazine D-fructofuranose 6-phosphate sulfate antimonous acid agmatine nitrate nitrate glycine lipid II (meso -undecaprenyl poly-β-1,6- poly- -1,6- a reduced c-type a reduced an D-cystine O-acetyl-L-serine putrescine N-acetyl-D-glucosamine asp sn-glycerol sn-glycerol D-sorbitol D-mannitol sulfate L-cysteine an glutathione cob(I)alamin spermidine spermidine L-ornithine a glycerophosphodiester a drug phosphate L-glyceraldehyde 3-phosphate D-mannitol hypoxanthine DL-glyceraldehyde antimonous acid arg arg betaine calcium hydrogenphosphate diaminopimelate 2-dehydro- cystine phosphate D-cystine N-acetyl-D- N-acetyl-D- c-type cytochrome c-type oligopeptide L-ascorbate 4-hydroxybenzoate lanthionine cys L-carnitine enterobactin D-glucopyranose glu phosphate 3-phosphate thiosulfate nitrite nitrite maltotriose residues oligopeptide (R)- inosine D-glucopyranose maltose 3-phosphate D-sorbitol guanine urate thiosulfate non-specific ion/solute a sugar alcohol arsenite L-canavanine arg glycine zinc hydrogenphosphate 3-deoxy-D- 2+ L-cystine glucosamine shikimate L-galactonate [+ 3 more] ethanolamine [+ 2 more] D-glucopyranose 6-phosphate D-glucopyranose choline asp N-acetylneuraminate N-acetylneuraminate D-mannitol sulfate xanthine xanthine nitrite containing) maltotetraose D-fructuronate L-fucose Mo glucosamine H O cytochrome cytochrome pantothenate [+ 6 more] D-glucopyranose uracil xanthine maltose [+ 3 more] arg betaine [+ 3 more] S-sulfo-L-cysteine 2 lysine / gluconate glutathione spermidine lysine / glutamate / predicted mannitol- sulfate/ glycine putative thiosulfate/ arginine / L-arginine undecaprenyl- putative oligopeptide L-ascorbate / L-cysteine glutathione vitamin cystine ABC preferential multidrug/ arginine / putrescine sn-glycerol 3-phosphate phosphate mannose- glucose- aspartate sn-glycerol 3-phosphate sorbitol- transporter specific thiosulfate betaine ABC maltose ABC Sec Holo- oligopeptide ShiA ABC ABC AaeAB LgoT NarX PqiA HflD YgjV ZipA ElyC DnaA TrxA MinE DnaK B ABC PanF EamB SohB PspA SafA RcsD UspB LetB spermidine CaiT EntS PotE ornithine ABC EutH / glycerophosphodiester EmrE AdeP RutG NupC ABC specific PTS specific PTS UhpT MalX GalP BetT GltP UraA YjbB NanT NanC / glycerophosphodiester GlpT specific PTS MtlA CysZ GhxQ GhxP UacT XanQ XanP sulfate ABC LamB GlpF ArsB ArgO TatABC ornithine AdiC ABC NarK NarK NarU ProP PitA NepI MurJ GntP KdgT FucP ModD YijE CsrD DjlA Psd FetA FtsA phosphate-α-L- HtpX PspD TcyP YdfJ DgcF OpgC RmuC YabI UhpB YnaI YagU NfrB PgaCD PgaA YhjD NtrB Syd NarQ DgcQ UbiB YqjA AqpZ YgbE cytochrome YfeH ABC specific PTS 12 transporter ABC ABC complex of PTS enzyme ABC transporter, non- transporter Translocon ABC transporter ABC transporter Ara4N flippase oxidase transporter enzyme II exporter transporter transporter transporter efflux pump ABC exporter ABC transporter transporter enzyme II enzyme II transporter ABC transporter enzyme II SORBITOL II CmtBA transporter osmoregulatory transporter CydDC transporter transporter ethidium antimonous acid lipid II (meso poly-β-1,6- partially 4-hydroxybenzoate O-acetyl-L-serine enterobactin an apo-[c-type (R)- sulfadiazine xanthine uridine D-mannopyranose 6-phosphate maltose uracil phosphate D-mannitol urate non-specific ion/solute antimonous acid L-canavanine glycine magnesium hydrogenphosphate inosine diaminopimelate 2-dehydro- cystine L,L-homocystine N-acetyl-D- deacetylated shikimate L-galactonate L,L-homocystine nalidixate L-carnitine ethanolamine D-glucopyranose choline glu N-acetylneuraminate N-acetylneuraminate sn-glycerol sulfate xanthine xanthine arsenite nitrite nitrite nitrite maltotriose D-fructuronate L-fucose Mo 2+ 4-amino-4- H O H O H O cys uracil hypoxanthine hypoxanthine arg arg 3-deoxy-D- cytochrome] 2 2 2 pantothenate L-ornithine putrescine a drug adenine cytidine D-glucosamine 6-phosphate D-glucopyranose D-fructofuranose 6-phosphate D-glucopyranose 3-phosphate D-mannitol 1-phosphate 1-phosphate xanthine selenite maltose DL-glyceraldehyde arg betaine calcium hydrogenphosphate guanosine containing) deoxy-α-L- D-cystine glucosamine poly-β-1,6- an L-ascorbate glutathione cob(I)alamin D-cystine putrescine spermidine γ a glycerophosphodiester asp sn-glycerol D-sorbitol D-mannitol selenite glycine maltotetraose with reduced H O an cys -butyrobetaine putrescine thymine inosine phosphate N-acetyl-D-glucosamine 6-phosphate L-glyceraldehyde 3-phosphate guanine guanine a sugar alcohol agmatine arg nitrate nitrate zinc hydrogenphosphate gluconate L-cystine O 2 O [+ 2 more] 6-phosphate glu 3-phosphate D-sorbitol 6-phosphate selenate arabinopyranosyl N-acetyl-D- 2 2 oligopeptide 6-phosphate glutathione lanthionine spermidine lys [+ 6 more] D-glucopyranose 6-phosphate 6-phosphate 1-phosphate selenate betaine L-cysteine O oligopeptide D-glucopyranose 6-phosphate asp phosphate sulfate [+ 3 more] arg [+ 3 more] S-sulfo-L-cysteine glucosamine 2 [+ 3 more] L-ornithine sulfate ditrans,octacis thiosulfate residues thiosulfate -undecaprenyl phosphate phosphate an osmoregulated a phosphatidylglycerol periplasmic glucan Cofactor, Carrier, and Vitamin Biosynthesis Cell Structure Other Biosynthesis 6 4-deoxy-4-formamido- poly-β-1,6- a (3R,6Z)-3- a [glutamine 1-deoxy- Fermentation glycerol degradation to butanol superpathway of and Degradation an inactive a peptidoglycan a nascent peptidoglycan a peptidoglycan a nascent peptidoglycan a peptidoglycan dimer an O - a [protein]- UDP-N-acetyl- methyl β-D-glucoside 3-oxo-(5Z)- 4-hydroxy- a (7Z)-3- a reduced meso- a (7Z)-hexacos- a (5Z)-tetracos- sn-glycerol a (3Z)-docos- an N-modified an unsulfurated ATP molybdopterin RX glutathione glutathione 34 a decanoyl-[acyl- biotin biosynthesis I inosine 5'- Detoxification SAM with (L-alanyl-γ-D- with (L-alanyl-γ-D- γ γ with pentapeptide methylguanine α-D-muramoyl-L- α-L-arabinopyranosyl a malonyl-[acp] a malonyl-[acp] a myristoyl-[acp] a malonyl-[acp] cys N-acetyl-D- a type IV prepilin triphosphate a cytidine lys hydroxyoctadec- synthetase]-O glu oxohexacos- D-xylulose glu superpathway of ubiquinol-8 superpathway of thiamine diphosphate biosynthesis I guanylyl molybdenum flavin biosynthesis I (bacteria and plants) superpathway of pyridoxal 5'-phosphate biosynthesis and salvage lipoate biosynthesis molybdopterin biosynthesis thiamine diphosphate salvage II Secondary Metabolite Biosynthesis malate/L-aspartate degradation superpathway of deoxyribonucleosides degradation guanosine superoxide with (L-alanyl- -D- with (L-alanyl- -D- L-cysteine aminoacyl-[tRNA] 6-phosphate dodecenoyl-CoA 2-nonenal GMP putrescine carrier protein] ITP glutathionylspermidine Kdo transfer to arsenate flavodoxin diaminopimelate 7-enoyl-[acp] 5-enoyl-[acp] 3-phosphate 3-enoyl-[acp] [sulfur carrier] Ile2 4 1-deoxy- 2+ 2+ nucleotides phosphate radicals triphosphate glutamyl-meso-2,6- glutamyl-meso-2,6- glutamyl-meso-2,6- glutamyl-meso-2,6- stems (meso- in DNA alanyl-D-glutamate ditrans,octacis- glucosamine in tRNA 6-enoyl-[acp] -(5'-adenylyl) 7-enoyl-[acp]3-oxoacyl- Co Co biosynthesis (early decarboxylation) cofactor biosynthesis and incorporation I biosynthesis lipid IV I (E. coli) glycerol shuttle pathway detoxification (3R)-3- putative glutamate A homolactic fermentation 2'- degradation II degradation reductase diaminopimeloyl-D- diaminopimeloyl- diaminopimelate undecaprenyl phosphate -L-tyrosine D-xylulose Cd 2+ Cd 2+ a malonyl-[acp] D-erythrose 4-amino-2-methyl-5- enterobactin biosynthesis glycerol degradation III degradation diaminopimeloyl-D- diaminopimeloyl-D- hydroxyacyl- [ACP] beta- racemase: MoO - II (glutaredoxin) molybdopterin putative 6- acetyl-CoA C- glutathionine putative kinase: ITPase: 2+ ZupT 2+ an osmoregulated cys 2 cys alanine) tetrapeptide D-alanyl-D-alanine) containing) 6 β inorganic Ile Zn Zn malonyl-CoA IPP 4-phosphate pyrimidinemethanol glutathione spermidine CMP-Kdo lipid IV (E. coli) vibriobactin biosynthesis dehydrogenase: 2'- AMP alanine) tetrapeptide alanine) tetrapeptide O -alkylguanine- UDP-N- putative beta- putative beta- acyl-acp:sn- putative beta- peptidyl- L-cysteine poly- -1,6- putative tRNA - [acyl-carrier glutamate- reductase: ketoacyl- murI a 1,2-diacyl-sn-glycerol molybdopterin GTP an octanoyl-[acp] A asp superoxide adenylyltransferase: phospho-beta- acyltransferase: S-transferase: glutathione-S- xylB yjjX periplasmic glucan ATP D-glucopyranose deoxycytidine IMP arsenate ribonucleoside pentapeptide undecaprenyl desulfurase: N-acetyl-D- leader triphosphatase: protein] glutamine GMP putrescine fabG ACP [+ 2 more] [+ 2 more] methyltransferase: cofactor D-erythrose- hydroxymethylpyrimidine gldA aspartate GMP superoxide DNA- acetylmuramoyl- ketoacyl-ACP ketoacyl-ACP glycerol-3- ketoacyl-ACP tRNA moaB glucosidase: fadI gst transferase: lysidine amino acid L-cysteine:[protein molybdopterin- lipoate L-cysteine:[protein chorismate deaminase: cdd 2'- inosine 5'- arsenate ygiF nucleosidase: ligase: puuA putative with phosphoglycerol bioC isopentenyl- kinase: pdxK chorismate dihydroxyacetone guanosine-5'- dismutase: triphosphate L,D- N-acetylmuramoyl- alkyltransferase: L-alanyl-D- phosphate- synthase: synthase: phosphate 1-O- synthase: hydrolase: sufS glucosamine N peptidase: synthetase: dehydratase: synthetase putative synthase: exporter: ∆ cysteine] guanine 4-phosphate biosynthesis molybdopterin- cysteine] glutathionylspermidine 3-deoxy-D-manno glucokinase: transaminase: monophosphate reductase: arginine dependent peptidoglycan molybdopterin Z5177 3-ketoacyl- putative Z3391 ppnN substituent a malonyl-[acp] methyl ester diphosphate - GTP cyclohydrolase hydroxymethylpyrimidine phosphate reductase transpeptidase: L-alanine ogt glutamate--2,6- α-L-ara4FN Z4866 Z4866 acyltransferase Z4866 pth cysteine -deacetylase: hopD inorganic tilS fabZ deadenylase: Z4866 xylulose yddG IDP a protein TatABC a protein dinucleotide dehydrogenase: protein B: lipB synthase -octulosonic acid isochorismate glk aspC 2'- deoxyguanosine sodA acid resistance adenylyltransferase: methyl β-D- CoA glutathione-S- beta- isomerase: idi sulfurtransferase: II: ribA a [lipoyl-carrier protein] sulfurtransferase: synthetase: gss adenosine dehydrogenase: arsC activase: nrdG D,D- ldtD amidase: amiB diaminopimelate deformylase: (glycerol-3- pgaB [+ 3 isozymes] triphosphatase: glnE kinase: biosynthesis epd kinase: thiD transferase: waaA hydroxymutase isochorismate oxaloacetate thymidine phosphorylase: phosphohydrolase: [+ 2 isozymes] O-6-methylguanine- putative beta- putative beta- putative beta- peptidyl- desulfurase: mog (glutathion-S- orf, 3-hydroxyacyl- γ-glutamyl- ketoacyl- putative D-glt iscS 6 adenylyltransferase: iscS D-glucopyranose deoxyadenosine guaB hydrogen arsenite transpeptidase: glucoside 6- ppa thiolase: transferase: Z4878 putative beta- 2,5-diamino-6-(5-phospho-D- N -octanoyl-L-lysine 5-(2-hydroxyethyl) 2, menaquinone hydroxymutase yrfG L,D DNA ligase: murE arnD phosphate tRNA iscS hypothetical [acp] D-ribose 5- L-putrescine ACP DMAPP protein B: mobB 4-phospho- moeB phosphorylase: deaminase: add deoD XMP arg ftsI ketoacyl- ketoacyl- ketoacyl- phosphate fadA Z3391 yl)-4-hydroxy- beta- 1-deoxy-D- Ins(1,2,3,4,5,6)P ketoacyl-ACP L-cysteine L-cysteine HMP-P α 6-phosphate malate peroxide γ phosphate 6 ribosylamino)pyrimidin-4(3H)-one lipoyl -4-methylthiazole glutathionylspermidine -Kdo-(2->6)- biosynthesis: 2, menaquinone deoxyadenosine [+ 3 isozymes] an active transpeptidase: a peptidoglycan dimer L-alanyl- -D- methyltransferase: [acyl carrier [acyl carrier acyltransferase) [acyl carrier hydrolase: partially an N-terminal 2-nonenal protein: yacA dehydratase: a [glutamine- guanine reductase: xylulose 5- molybdenum cofactor D-erythronate a carboxy- DHAP dehydrogenase: deoA adenosine arginine decarboxylase, 5'-deoxyadenosine a flavodoxin [+ 2 isozymes] acetate molybdopterin glucohydrolase: ADP ketoacyl- ATP synthase synthase: Z4866 desulfurase: synthase: lipA desulfurase: lipid IV (E. coli) menF biosynthesis: menF glucose-6- phosphorylase: guanosine catalase: met ribonucleoside ldtE with pentapeptide stem glutamyl-meso-2,6- ada 4-amino-4-deoxy-α- : plsB arfB deacetylated poly- L-phenylalanyl- fabA synthetase]- Z4865 geranyl diaminohydroxyphosphoribosylaminopyrimidine erythronate- adenylated GTP phosphomethylpyrimidine hydroxyethylthiazole A thymidine deaminase: add pyrimidine 5'- UDP-N-acetyl- protein] protein] protein] a peptide adenine bglA a (2E,6Z)- a (3R,7Z)-3- [acyl phosphate / thiamin 3-phytase: sufS guanylyltransferase: sufS phosphate mdh deoxyinosine katE biosynthetic: speA semiquinone formate a sulfurated β phosphate diphosphate (3Z)-dec-3- a glutathione- L-tyrosine + + putative beta- a [lipoyl-carrier isochorismate triose- deoD triphosphate (meso-diaminopimelate diaminopimeloyl- α L-arabinopyranosyl synthase: synthase: synthase: -1,6-N-acetyl- [type IV prepilin] 34 H H diphosphate an [L-cysteine guanylyl mobA deaminase: ribD 4-phosphate [small subunit of an [L-cysteine kinase: thiD kinase: thiM KDO transferase: isochorismate uracil phosphorylase: 2'-deoxyinosine phosphorylase: nucleotidase: a nascent peptidoglycan -D-muramoyl- ala dinucleotide acetyl-CoA HX a lysidine octadecadienoyl- hydroxyhexacos- carrier triphosphate agp 6 isomerase: pgi [+ 23 isozymes] guanosine [+ 2 isozymes] arginine decarboxylase, [sulfur carrier] enoyl-CoA S-conjugate ketoacyl-[acyl protein]-N -[(R)- synthase: entC phosphate arsenite reductase containing) D-alanyl-D-alanine γ ditrans,octacis- Z1549 Z1549 Z1549 D-glucosamine Ile2 synthase: ispA desulfurase]-S- molybdenum dehydrogenase: molybdopterin desulfurase]-S- waaA synthase: entC phosphorylase: ppnP deoD yjjG with D,D cross-links D-ala a nascent peptidoglycan a [protein]-S- L-alanyl- -D- 1-myristoyl- in tRNA [acp] 7-enoyl-[acp] protein] synthase D-myo-inositol carrier protein] a [ThiS sulfur- 5-amino-6-(5-phospho- dihydrolipoyl]-L-lysine GTP 3',8'- 4-methyl-5-(2- isomerase: inosine phosphorylase: degradative: adiA a guanine in DNA undecaprenyl phosphate an N-modified an uncharged β-D-glucose geranyl sulfanyl-L-cysteine cofactor pdxB synthase] sulfanyl-L-cysteine HMP-PP α-Kdo-(2->4)-α-Kdo- F6P (S)-malate deoA O agmatine (meso-diaminopimelate with L,D cross links D-ala methyl-L-cysteine glutamyl-meso-2,6- sn-glycerol MeOH synthase: synthase: Z1549 D-ribosylamino)uracil cyclase: phosphooxyethyl)thiazole S-adenosyl- isochorismate ppnP [+ 2 isozymes] 2 amino acid tRNA 6-phosphate (1,2,4,5,6)- carrier protein] (2->6)-lipid IV (E. coli) isochorismate tpiA thymine α containing) (meso-diaminopimelate diaminopimelate 3-phosphate Z1549 diphosphate cysteine :[Thil sulfur- (3R)-3-hydroxy-2-oxo- moaA A 2-deoxy- -D- a 3- ATP synthase pentakisphosphate 5-amino-6-(5- L-methionine D-glyceraldehyde 6-phosphofructokinase: inosine guanosine a (9Z)-3-oxooctacos- a (7Z)-3-oxohexacos- a (5Z)-3-oxotetracos- a 3-oxoglutaryl- ThiS protein cysteine] 4 phosphooxybutanoate molybdopterin (8S)-3',8-cyclo-7,8- ribose 1-phosphate containing) oxododecanoyl- / thiamin farnesyl phosphoribosylamino) thiamine biosynthesis 3-phosphate pfkA phosphorylase: phosphorylase: 9-enoyl-[acp] 7-enoyl-[acp] 5-enoyl-[acp] H + H + [acp] methyl ester adenylyltransferase: sulfurtransferase: synthase dihydroguanosine [acp] triphosphate diphosphate uracil reductase: ribD D-glyceraldehyde phosphohydroxythreonine phosphate deoxyribose 1,5- ppnP deoD thiF iscS pyruvate sulfurtransferase: 5'-triphosphate met glyceraldehyde- 6-phosphofructokinase: purine degradation synthase 3-oxo-glutaryl- synthase: ispA 5-amino-6-(5-phospho- 3-phosphate aminotransferase: serC synthase: thiE (2S,3S)-2,3- (2S,3S)-2,3-dihydroxy- phosphomutase: inosine xanthosine RseB a carboxy- a [ThiI sulfur- ynjE cyclic pyranopterin methionine 3-phosphate pfkB uracil 2-deoxy-α- pyrimidine [acp] methyl ester D-ribitylamino)uracil dihydroxy-2,3- 2,3-dihydrobenzoate deoB phosphorylase: guanine phosphorylase: a mature peptidoglycan L-alanyl-γ-D- a [chaperone- 1-palmitoyl- queuosine at GDP-α-D- a (5Z)-3- (2E,6E)-farnesyl adenylated- carrier protein]- dehydrogenase: β-D-fructose 1,6- D-ribose 1- ribonucleosides UDP-4-deoxy-4-formamido- UDP-N-acetyl- 3-oxo-(5Z)- a 5'-phospho- (S)-1-pyrroline- (2E,11Z)- + + reductase: fabG 1-deoxy-D- 4-phosphooxy- monophosphate adenosyltransferase: di-trans,octa-cis- adenine 2503 in 23S rRNA a protein with glutathione RNA sn-glycerol a cis- sn-glycerol an ADP-sugar GDP-α-D-mannose (2E,6E)-farnesyl palmitoyl-CoA H O ATP L-methionine- ATP H PntAB H dihydrobenzoate 2,3-dihydro-2,3- 2-deoxy-D-ribose deoD ppnP β (meso-diaminopimelate a cis-delta13-C32:1-[acp] a malonyl-[acp] glutamyl-meso-2,6- ADP]-[disordered- sn-glycerol a palmitoleoyl-[acp] a palmitoyl-[acp] α D-glt a tRNA precursor a butanoyl-[acp] IPP DL-allothreonine 2 glu position 34 D-ala mannose oxotetracos- 5'Ap3A 2'-AMP diphosphate [ThiS sulfur- S-sulfanyl- 5-amino-6-(5- L-threonine a thiocarboxylated synthase: moaC thiamine phosphate metK gapA bisphosphate phosphate degradation undecaprenyl phosphate -L-arabinopyranose -D-muramoyl- diphosphate tetradecenoyl-CoA [DNA] 5-carboxylate octadecenoyl-CoA (S)-S-oxide putative beta- xylulose-5- 5-phosphate adenosine a disulfide bond 3-phosphate vaccenoyl-[acp] 3-phosphate Asp enoyl-CoA Ap A [small subunit of cyclic 2,3-dihydro-2,3- dihydroxybenzoate containing) diaminopimeloyl- UDP-N-acetyl- form scaffold 3-phosphate L-alanine of a tRNA fused DNA- 5-enoyl-[acp]3-oxoacyl- 4 all-trans- carrier protein] L-cysteine phospho-D- 4-hydroxythreonine- SAM deoxyribose 1,5- cytidine xanthine putative beta- D-alanine--D- methionine ketoacyl-ACP chorismate phosphate dihydroxybenzoate dehydrogenase: entA glyceraldehyde- hypoxanthine guanine D-alanine α-D-muramate protein] complex binding hydratase: synthetase: octaprenyl- D-ribulose 5-phosphate ribitylamino)uracil molybdopterin pyranopterin thiamine putative phosphomutase: cytidine ADP-sugar GDP-mannose ketoacyl-ACP alanine GDP- [ACP] sulfoxide HdeB reductase: Z4865 D-glyceraldehyde synthase: 4-phosphate 3-phosphate deoxyribose- deaminase: guaD adenosine orf, hypothetical RNase P, acetyl-CoA C- acyl-CoA DNA 5' fadJ entE adenylate:persulfide phosphatase: ybjI synthase] phosphate monophosphate dehydrogenase: entA deoB deaminase: cdd xanthine:NAD+ undecaprenyl- peptidoglycan lytic putative beta-ketoacyl- oxidized acyl-[acp]:1-acyl- acyl-acp:sn- acyl-acp:sn- pyrophosphatase: mannosyl UDP-N- synthase: Z4866 ditrans,polycis allothreonine glutamyl-Q transcriptional ligase: ddlB mannose reductase: reductase: copper/ diphosphate chorismate dxs dehydrogenase: 2,3-dihydroxybenzoate dehydrogenase: aldolase: phosphate deaminase: protein: ygfB protein RNase D acyltransferase: thioesterase: adenylyl a (3R)-3-hydroxyglutaryl- 3-phosphate transferase: thiF 3,4-dihydroxy- kinase: thiL 2,3- 2-deoxy-D-ribose uridine oxidoreductase: phosphate 4- endotransglycosylase: ACP synthase: Z4866 UDP-N-acetylmuramate:L- glutaredoxin: -undecaprenyl- acetaldehyde- repressor hydrolase: enoyl-CoA fabG msrA Ap A Ag + silver Ag + synthase: ispB 5-amino-6-(5- pdxA gapC Z5687 hypoxanthine xanthine add 2 non- sn-glycerol-3- glycerol-3- glycerol-3- nudF hydrolase: gmm acetylmuramoyl- exonuclease: rnd putative beta- fadI yciA transferase: tRNA(Asp) D-alanine--D- 4 lyase: ubiC molybdopterin aldolase: deoC deoxy-4-formamido- 23S rRNA m A2503 component; / proline synthetase: + + [acp] methyl ester all-trans- 1-deoxy-D- carboxy-adenylated- 2-butanone- phospho-D- dihydroxybenzoate 2,3- 5-phosphate uridine hydroxylase: xdhC xdhA xdhB mltD putative beta-ketoacyl- alanyl-γ-D-glutamyl-meso chaperonin grxA phosphate 2-O- phosphate 1-O- phosphate 1-O- L-alanine--D- ketoacyl-[acyl diphosphate lyase (glycine- synthetase: nudK hydratase: methionine- Cu export Cu 1-deoxy-D- 3-amino-1- synthase: [+ 3 isozymes] methyltransferase: protein C5; ADP-sugar GDP-mannose 3-ketoacyl- acyl-CoA rtcA alanine putative adenosine octaprenyl xylulose-5- [ThiS sulfur- 4-phosphate thiamine diphosphate dihydroxybenzoate- phosphorylase: xanthine:NAD+ L-arabinose -diaminoheptanedioate- [+ 2 isozymes] acyltransferase acyltransferase glutamate carrier protein] synthase [(2E forming): glyA gluQ dehydrogenase fadB lysU system 3-hydroxyglutaryl- 4-hydroxybenzoate tyr ribitylamino)uracil xylulose 5- hydroxyacetone 2,3- 13-DPG xdhC xdhA xdhB urate adenosine inosine guanosine rlmN peptidoglycan lytic [acyl carrier protein] molecular acyltransferase: processes diphosphatase: mannosylhydrolase: CoA thioesterase: ligase: ddlA (S)-3-hydroxy-(11Z) beta- S-sulfoxide QseG phosphate synthase: ribB moaD moaE oxidoreductase: transferase: arnC ,6E)-farnesyl- / 1-pyrroline- [acp] methyl ester diphosphate carrier-protein] phosphatase: yigB phosphate 1-phosphate S-adenosyl-L- dihydroxybenzoate- [aryl-carrier deoxyribose- udp acetaldehyde D-glyceraldehyde 3-phosphate endotransglycosylase: synthase: Z1549 D-alanine ligase: mpl chaperone plsC (glycerol-3- (glycerol-3- nudE wbdQ ligase: murD a nucleoside 5'- synthase: Z1549 D-alanyl-D-alanine α-D-mannose ketoacyl- reductase: Ap4A ADP AMP triose- xanthine xdhC xdhA xdhB tRNA, 4.5S a tRNA diphosphate thiolase: fadA tesB an adenosine- 5-carboxylate -octadecenoyl-CoA dehydratase: fabZ synthase: sulfurtransferase: thiI 1-deoxy-L-glycero- methionine salvage I [aryl-carrier protein] ligase: entE phosphoglycerate phosphate uridine mltC ATPase: hscA a protein with phosphate phosphate monophosphate glutamyl- 1-phosphate ACP bisC 2-iminoacetate 2503 RNA: rnpA a 3-oxohexanoyl-[acp] 5'-diphospho- GMP maltose ABC 4-hydroxybenzoate dxs ARP phosphate acetaldehyde 4-deoxy-4-formamido-α-L- a 2-methyladenine GSSG acyltransferase) acyltransferase) specific]: uppS acetaldehyde dehydrogenase maltose maltose synthase: thiH tetrulose 4-phosphate pyridoxine 5'- pyridoxine molybdopterin [EntB aryl- protein] ligase: entE enterobactin kinase: pgk aldolase: phosphorylase: xanthine:NAD+ urate UDP 5'-deoxyadenosine UDP-N-acetylmuramoyl- reduced L- 1-palmitoyl-2- α UDP-N-acetyl- gly 5'-[DNA] queuosine at reductase: met transporter a (2E)-enoylglutaryl- octaprenyltransferase: 1-deoxy-D- a thiocarboxylated- isomerase: dehydrogenase xanthosine adenosine inosine guanosine arabinopyranosyl ditrans,octacis in 23S rRNA met endoribonuclease an -D-aldose PutA: putA phosphate γ-glutamyl cycle SAH carrier protein] synthase: entD deoC ppnP oxidoreductase: a mature peptidoglycan L-alanyl-γ-D- a [disordered- an [Fe-S cluster cysteine residues palmitoleoyl- : plsB : plsB AMP GDP D-mannose α-D-muramoyl-L- (3Z)-dodec- position 34 Z4865 [acp] methyl ester enterobactin 3-phospho- tpiA (acetylating) phosphorylase: phosphorylase: phosphorylase: a mature peptidoglycan a cis-delta15-3-oxo-C34:1-[acp] toxin ChpB: chpB 1-phosphate acetyl-CoA palmitate a (3R,5Z)-3- ubiA xylulose 5- [ThiS sulfur- D-glyceraldehyde -undecaprenyl phosphate di-trans,octa-cis 3-enoyl-CoA Asp LolA 2-iminoacetate 6,7-dimethyl-8- synthase: pyridoxamine S-adenosylhomocysteine phosphopantetheinyl synthase: entF entE entB D-glycerate DHAP xdhC xdhA xdhB with (L-alanyl-γ-D- strand (non- glutamyl-meso-2,6- form [Fe-S] cluster biosynthesis sn-glycerol alanyl-D-glutamate of a tRNA glu hydroxytetracos- enoylglutaryl- phosphate carrier protein] 2-carboxy-1,4- pyridoxine 3-phosphate D-glyceraldehyde uracil : mhpF adenosine ppnP ppnP ppnP -undecaprenyl AIR ribityllumazine pdxJ nucleosidase: mtn transferase: entD entD entF acetaldehyde glutamyl-meso-2,6- reducing terminus) diaminopimeloyl- scaffold protein] chaperone]-ATP 3-phosphate 1-palmitoyl- 1-cis-vaccenoyl- 5-enoyl-[acp] [acp] methyl ester 4-hydroxy-3- naphthoquinol biosynthesis kinase: pdxK glutathione phosphoglyceromutase 3-phosphate [+ 2 isozymes] nucleotides xanthosine adenosine inosine guanosine an [RNA]-3'- a 5'-hydroxy- diphosphate synthase: ribE pyridoxamine pyridoxal S-ribosyl-L- entE entB (2,3-dihydroxybenzoyl)adenylate glyceraldehyde- urate diaminopimeloyl-D- D-alanine sn-glycerol- EnvC reductase: fabI octaprenylbenzoate 1-deoxy-D-xylulose [+ 3 isozymes] ser 2: gpmB degradation III phosphorylase: phosphorylase: phosphorylase: phosphorylase: ribonucleoside- - sn-glycerol phosphomethylpyrimidine kinase: pdxK homocysteine (2,3- 3-phosphate acetaldehyde alanine) tetrapeptide 3-phosphate 3-phosphate 5-phosphate:thiol chorismate pyridoxine a holo-[EntB aryl- [EntF L-seryl- 2,3-bisphosphoglycerate- acetyl-CoA ppnP deoD deoD deoD 3'-phosphate 3'-[RNA] 3-octaprenyl-4- synthase: thiC dihydroxybenzoyl) dehydrogenase: dehydrogenase AMP Eco a glutaryl-[acp] methyl ester sulfurtransferase: 5'-phosphate enterobactin carrier protein] hydroxybenzoate 6,7-dimethyl-8-(1-D-ribityl)lumazine isochorismate pyridoxamine pyridoxal glutathione S-ribosylhomocysteine carrier protein] adenylate independent gapA (acetylating) AMP thiG synthase: α-D-ribose- decarboxylase: ubiD HMP-P hydroxymutase 5'-phosphate kinase: synthetase: lyase: luxS phosphoglycerate : mhpF nucleosidase: di-trans,octa-cis UDP-N-acetyl- core an odd numbered a nascent peptidoglycan a reduced 1-myristoyl- a [prolipoprotein]- L-alanyl-γ-D- DNA with adenine:7,8- a [glutamine- an oxidized a [protein] a (6Z)-3- a [disulfide-bond phosphopantetheinyl glyceraldehyde- 3-oxo-(9Z)- lysine within + a supercoiled a lipoprotein (2E,9Z)- putative beta- riboflavin 2, menaquinone pdxY entD entF mutase: gpmM amn 1-phosphate a phosphatidylethanolamine a 2,3,4-saturated a [protein] Ser/Thr (R)-lipoate NADP FMNH stearoyl-CoA H O an acyl-CoA H O GDP HMP-PP pyridoxine 5'- gshB 2,3- a 2,3-dihydroxybenzoyl-[VibB] -undecaprenyl α-D-muramoyl- oligosaccharide- straight chain 2,3,4- a cis-delta19-C38:1-[acp] a malonyl-[acp] with (L-alanyl-γ-D-glutamyl- a 2,3,4-saturated 2- + + ferredoxin [iron- sn-glycerol a palmitoleoyl-[acp] S-1,2-diacyl-sn- glutamyl-L-lysyl- a purine dihydro-8- synthetase]- an octanoyl-[acp] 3-sulfino-L-alanine 2 2 nitroaromatic 2 C-terminal glu duplex DNA hexadecenoyl-CoA oxooctadec- carrier protein] a protein ketoacyl-ACP 2-octaprenylphenol 2-[(2R,5Z)- superpathway of tetrahydrofolate biosynthesis and salvage synthase: ribC entE entB transferase: entD 3-phosphate [+ 2 isozymes] α fatty acyl-[acp] NADP H octadecenoyl-CoA ATP gcv protein H signal peptide CheB phosphomethylpyrimidine biosynthesis: menF phosphate pyridoxamine pyridoxal L-homocysteine dihydroxybenzoate- 2-phospho- AMP -D-ribose 1,5- phosphate L-alanyl-γ-D- lipid A (E. coli saturated fatty acid meso-2,6-diaminopimeloyl-D- lysophosphatidate sulfur] cluster 3-phosphate glyceryl-L-cysteine D-alanyl-D-alanine ribonucleoside oxoguanine mismatch L-tyrosine putative serine/ compound L-glutamate 3' to 5' ATP- signal peptide enoyl-CoA 6-enoyl-[acp] with reduced L- nucleoside HMP-PP synthase: Z4866 2-carboxy-4- a holo-[EntF dehydrogenase: putative beta- NADPH- 3-oxoacyl- PqiB kinase: thiD isochorismate oxidase: 5'-phosphate kinase: D-glycerate acetyl-CoA nucleosidase: phosphomutase: threonine kinase dependent peptidase: hydratase: cysteine residuesprotein di- and hydrolase: 2-octaprenylphenol methylthiazol-5(2H riboflavin [aryl-carrier gapC glutamyl-meso-2,6- K-12 core type alanyl-D-alanine) pentapeptide ketoacyl-ACP dependent [ACP] [+ 3 isozymes] pdxH oxidase: pdxH pdxK cobalamin- (L-seryl)adenylate L-seryl-carrier deoB 3-ketoacyl- putative FMN acyl-CoA acyl-CoA sppA fadJ disulfide nudJ protein] ligase: entE ppnN diaminopimeloyl- with D-GlcNAc) short chain putative beta-ketoacyl- acyl-[acp]:1-acyl- ferredoxin- D-alanyl-D-alanine adenine glutamine synthetase encoded by synthase: Z4866 cysteine sulfinate nitroreductase ribosomal DNA reductase: triphosphate 6-hydroxylase: ubiI HMP-PP )-ylidene]ethyl GTP 2-succinyl-5- protein] enolase: acyl-[acp]:1-acyl- putative CoA lipoate- reductase: thioesterase: thioesterase: oxidase a 3-oxopimeloyl- independent D-ribose 5- + purine nucleoside bacteriophage helicase: enoyl-CoA hydrolase: HMP-PP 3-(all-trans phosphate enolpyruvyl- enterobactin eno 13-DPG D-alanyl-D-alanine acyl-CoA ACP synthase: Z4866 D-alanyl-D-alanine sn-glycerol-3- NADP sn-glycerol-3- leader carboxypeptidase: glycosylase: adenylyltransferase: putative beta- desulfinase: sufS NfsA: nfsA protein S6 lipoprotein fabG [acp] methyl ester riboflavin kinase: ribF homocysteine adenine phosphate thiolase: phosphorylase: BP-933W: Z1444 protein ligase ssuE yciA tesB recB (quinone) nudJ synthase: enterobactin norspermidine-2,3- a dihydroxyphenyl-5- Polymeric Compound synthetase: fadK carboxypeptidase: phosphate 2-O- reductase: phosphate 2-O- peptidase: dacD mutY glnE cysteine sulfinate modification: signal peptide hydratase: hydrolase: a peptide -octaprenyl) GTP 6-hydroxy-3- PLP phosphoenol phosphoethanolamine putative beta-ketoacyl- fadA ketoacyl-[acyl A: Z5988 FMN acyl-CoA NAD(P)H putative a [disulfide-: dsbB HlyE 3-oxo-pimeloyl- transmethylase: dihydroxybenzoate Degradation acyltransferase: fpr deoD [+ 2 isozymes] acyl-CoA [+ 3 isozymes] peptidase: fadB cof YccA benzene-1,2-diol thiamine cyclohydrolase cyclohexene- entD entF synthase: methyloxazoline-[VibF] pyruvate phosphoglycerate transferase: eptA fatty acyl-CoA [acyl carrier protein] dacD acyltransferase: hopD D-alanyl-D-alanine carrier protein] desulfinase: csdA nitroreductase: rimK beta- bond carrier [acp] methyl ester FMN an α-(γ-L- metE undecaprenyldiphospho- acetyl-CoA C- a [protein] (L-serine/L- reductase: thioesterase: thioesterase: a single rseP (S)-3-hydroxy-(9Z) GMP 2-octaprenyl-6- phosphate 1-carboxylate γ entE entB entD entF kinase: pgk UMP synthetase: fadD synthase: Z1549 [+ 6 isozymes] plsC plsC prolipoprotein carboxypeptidase: an apurinic site a [glutamine synthase: Z1549 a hydroxylaminonfsB ketoacyl- protein] carrying HMP-P I: folE -L-glutamyl- cys gly pyruvate glycogen degradation I acyltransferase: threonine) phosphate a [glycine-cleavage fre tesB yciA stranded DNA -hexadecenoyl-CoA reductase: fabG hydroxyphenol synthase: 7,8- synthase: menD glutamyl)-L- methionine entE entB N-acetylmuramoyl-L- an oxidized dacA α-D-ribose- synthetase]-O a disulfide bond FMN L-cysteine kinase: signal fadI adenine within DNA a 3-oxodecanoyl-[acp] complex H protein] N 6 group-containing a [protein] C- a peptide ACP methylase: ubiG amino acid synthase: a 2,3- 3-phospho-D-glycerate alanyl-γ-D-glutamyl-meso lipid A-core- 1-phosphate 4 -(5'-adenylyl) sulfite putative beta- thiE dihydroneopterin adenylyltransferase: 2-succinyl-5-enolpyruvoyl- a 1,2-diacyl- an odd numbered a nascent peptidoglycan ferredoxin [iron- 1-myristoyl-2- peptidase: lspA a purine base ala compound terminal α-L- reductase: 2-methoxy- metH dihydroxybenzoyl- a seryl-[EntF pykA a glycogen -2,6-diaminopimeloyl- pyrophosphoethanolamine a 2,3,4-saturated 1,2-diacyl- NADPH -[(R)-lipoyl]-L-lysine Spy ketoacyl-ACP 3'-triphosphate 6-hydroxy-3-cyclohexene- dihydroxyphenyl-5- sn-glycerol AMP γ sulfur] cluster γ -L-tyrosine + glutamate-α- Z4865 ribF cysteinylglycine Alcohol Degradation straight chain 2,3,4- diphosphate a cis-delta21-3-oxo-C40:1-[acp] with (L-alanyl- -D-glutamyl- D-ala sn-glycerol 3-phosphate palmitoleoyl- L-alanyl- -D- FMN NADPH H stearate a carboxylate a (3R,6Z)-3- reductase: Z4865 6-(all-trans- 1-carboxylate superpathway of adenosylcobalamin salvage from cobinamide I [EntB aryl- L-seryl-carrier methyloxazoline-norspermidine- pyruvate phosphoglyceromutase D-alanyl-D-alanine (7Z)- Aer thiamine dihydroneopterin dipeptidase: pepN phosphoglycerate glycogen saturated fatty acyl CoA meso-2,6-diaminopimeloyl- sn-glycerol an (S-diacyl- acetyl-CoA glutamyl-L- D-ala L-glutamate hydroxyoctadec- octaprenyl)phenol (1R,6R)-2-succinyl- met carrier protein] protein] 2,3-dihydroxybenzoate kinase: 2: gpmB a lipoprotein hexadecenoyl-CoA a (3R)-3-hydroxypimeloyl- phosphate triphosphate FAD [+ 3 isozymes] D-alanine) tetrapeptide 3-phosphate sn-glyceryl) lysyl-D-alanine 6-enoyl-[acp] 2-octaprenyl-6- 6-hydroxy-2,4- pykF 2,3-bisphosphoglycerate- mutase: gpmA ethanol phosphorylase: signal peptide [acp] methyl ester thiamine diphosphatase: cob(II)inamide methionine glycerol and glycerophosphodiester degradation glycerol degradation V glycerol degradation II glgP -L-cysteinyl- methoxyphenol 4- cyclohexadiene- enterobactin independent degradation II glycogen degradation II monophosphate nudB glutamate--cysteine adenosyltransferase: pyruvate [apolipoprotein] YfiR 3-hydroxypimeloyl- hydroxylase: ubiH 7,8- 1-carboxylate cobinamide L-cysteinylglycine synthase: phosphoglycerate α 2-methoxy-6-all ligase: gshA ethanol glycerol an -limit dextrin [acp] methyl ester kinase: thiL dihydroneopterin synthase: menH adenosyltransferase: metK entD entF mutase: gpmM glycerol glycerol vibriobactin ethanol a glycogen ω trans-octaprenyl- ethanol glycerol glycerol a nascent peptidoglycan an O 4 - bis(guanylyl N-(4- L-glycero-L-galacto- N,N'- an N -(1- a [protein]- Ftp dehydratase: fabZ thiamine 3'-phosphate L-ascorbate biosynthesis (1R,6R)-6-hydroxy-2- btuR entE entB degradation I lipid II (meso a (2R)-2-hydroxy even core a [protein]- D-cellobiose UDP-N-acetylmuramoyl- (3R)-3- peptidoglycan D- arbutin 6- succinate phosphoenol (2E,7Z)- a [protein] with 1,4-benzoquinol SAM dehydrogenase: diffusion of dehydrogenase: dehydrogenase: limit dextrin α-1,6- γ a phosphatidylethanolamine bis-MGD cofactor γ an aminopeptidase S-formylglutathione a RNA-DNA hybrid H O hippurate ADP ATP glyoxylate diphosphate IV (animals, D- succinylcyclohexa-2,4- [corrinoid adenosyltranferase]- 2-phospho-D-glycerate glycogen diaminopimelate containing) with (L-alanyl- -D-glutamyl- numbered straight chain oligosaccharide- a cis-delta15-C34:1-[acp] a malonyl-[acp] L-cysteine methylthymine 6'-phosphate molybdopterin) L-alanyl- -D- hydroxybutanoyl- H O alanyl-DAP crosslink phosphate a hexanoyl-[acp] aminobenzoyl) octuluronate- diacetylchitobiose a mercapturate hydroxy-2- semialdehyde pyruvate 2 hexadecenoyl-CoA an N-terminal S-hydroxy- a (2E)-enoylpimeloyl- chaperone 2 inosine substrate xanthosine IDP 2-octaprenyl- diene-1-carboxylate an N-(2,3- adhP glycerol: glpF gldA gldA glucohydrolase: meso-2,6-diaminopimeloyl-D- 2,3,4-saturated fatty acid in DNA cofactor CoA -L-glutamate 1-phosphate oxopropyl) succinate- enoyl-CoA glyoxylate L-cysteine YbaV [acp] methyl ester glucuronate pathway) cob(II)inamide acetyl-CoA ethanol phosphorylase: lipid A (E. coli glutamyl-meso-2,6- putative beta- L-arginine 6-methoxy-1,4- UDP-α-D- dihydroxybenzoyl)- dihydroxyacetone dihydroxyacetone glgX alanyl-D-alanine) pentapeptide -[protein]- semialdehyde hydratase: reductase: o-succinylbenzoate enolase: eno ethanol glycerol a glycerophosphodiester glgP K-12 core type diaminopimeloyl- ketoacyl-ACP chitin nucleoside enoylpimeloyl- benzoquinol D-erythro-7,8- chorismate seryl-[EntF L-seryl- ethanol 6-phospho-β- meso- S-formylglutathione putative 6- putative Ap A glucuronate dehydrogenase: dihydroxyacetone with D-GlcNAc) O-4-methylthymine- D-alanine acyl-CoA ribonuclease: rnhA synthase: Z4866 putative L-arginine dehydrogenase fadJ 3 ghrB methylase: synthase: menC dehydrogenase: a debranched peptidoglycan short chain acyl-CoA putative beta-ketoacyl- bis-MGD aminopeptidase: p-aminobenzoyl- L-glycero- disaccharide hippuricase: synthetase: diphosphate [acp] methyl ester dihydroneopterin glu 5-oxo-L-proline carrier protein] adhE an α-limit dextrin DNA D-glucosyl-(1,4) diaminopimelic inosine hydrolase: yeiG phospho-beta- RNase: rnhB xanthosine (NAD + ): puuC 4-amino-4- adhP kinase: dhaL α maltotetraose glycosyltransferase: synthetase: fadK ACP synthase: Z4866 cofactor thioesterase: ypdF putative beta- glutamate L-galacto- deacetylase: hippuricase: enoyl-CoA glyoxylate kinase: ndk TrkA reductase: fabI ubiE L-ascorbate biosynthesis enterobactin phosphoenolpyruvate glycerol glycerophosphodiester -limit dextrin -D-glucose acid-D-alanyl S-formylglutathione glucosidase: Z5522 lysU a [protein]- NAD de novo biosynthesis dihydroneopterin 2-succinylbenzoate [corrinoid adenosyltranferase]- acetaldehyde dhaK dhaM mrcA methyltransferase: L,D- yciA nucleosidase: hydrolase: nucleosidase: octuluronate- Z5522 protein succinate hydratase: reductase: Lpp 6-methoxy-3- V (euglena, D- deoxychorismate D-glucopyranuronate ethanol fatty acyl-CoA phosphoethanolamine putative beta-ketoacyl- glucohydrolase: chaperone: endopeptidase: aminopeptidase: hydrolase: frmB Z5177 ketoacyl-[acyl chbG L-cysteine I (from aspartate) aldolase: folB cob(I)inamide synthase: acetoacetyl-CoA kinase: glpK phosphodiesterase: ugpQ DHAP ada rihC rihC fadB ghrA ITP a pimeloyl-[acp] methyl ester methyl-2-all- synthase: pyruvate dehydrogenase: maltodextrin [+ 2 isozymes] synthetase: fadD transferase: eptC [acyl carrier protein] fdhD carboxypeptidase: (R)-3- mtfA carrier protein] abgB abgA 1-phosphate deglycase: semialdehyde galacturonate pathway) entD entF DHAP 4 chbF dacB [+ 2 isozymes] (S)-3-hydroxy-(7Z) o-succinylbenzoate--CoA cobinamide O -methylthymine- ldcA DNA a nucleoside 5'- aldolase: ydjI hchA dehydrogenase pyruvate trans-octaprenyl- UDP-α-D-glucuronate 6-(hydroxymethyl) pabA pabB Amine and Polyamine Biosynthesis kinase: pykA adhE maltodextrin phosphorylase: a debranched a nascent peptidoglycan synthase: Z1549 hydroxybutanoyl- synthase: Z1549 N-acetyl-β-D- benzoate gly 5'Ap3A glycolate ligase: menE adenosyltransferase: entE entB 3-hydroxyacyl-CoA [+ 2 isozymes] [+ 5 isozymes] monophosphate an L-cysteine- + -hexadecenoyl-CoA pimeloyl-[acp] asp -7,8-dihydropterin acetaldehyde sn-glycerol 3-phosphate malP α γ di-trans,octa-cis- DNA [bis-MGD cofactor CoA acetate glucosaminyl- acetate (NAD ): sad arg a peptide 1,4-benzoquinol 4-amino-4- dehydrogenase: pyruvate phosphorylase: -limit dextrin with (L-alanyl- -D-glutamyl- a (R)-2-hydroxy even D-ribofuranose formate glutathione a 3-oxooctanoyl-[acp] D-ribofuranose xanthine S-conjugate a heme ChuS a heme methyl ester aldehydo-D- 4-(2'-carboxyphenyl) btuR undecaprenyl diphosphate AMP lipid A-core- methyltransferase: ogt α a proteinogenic β-D-glucose 4-aminobenzoate 2-octaprenyl- L-aspartate 2-amino-4-hydroxy-6- deoxychorismate phosphopantothenate biosynthesis I enterobactin putrescine fadJ kinase: pykF acetate malP meso-2,6-diaminopimeloyl-D- diphosphate numbered straight chain a 1,2-diacyl- chaperone]- UDP-N-acetyl- -D- thioesterase: tesB hypoxanthine a peptide hydroquinone glu aldehydo-L- (1->4)-D- a [protein]- succinate PqiC α glucuronate adenosylcobalamin spermidine putrescine glycine betaine acetaldehyde phosphoethanolamine D-glucopyranose peptidoglycan peptidoglycan amino acid 6-phosphate DHAP (R)-lactate esterase: bioH 3-methyl-6- UDP- -D-galacturonate hydroxymethyldihydropteridine -4-oxobutyryl-CoA biosynthesis III alanyl-D-alanine) pentapeptide 2,3,4-saturated fatty acyl CoA sn-glycerol D-glucopyranose bis-MGD D-ala muramoyl-L-alanyl- arabinuronate glucosamine L-arginine oxidase: nadB aminodeoxychorismate adenosylcobinamide salvage from cobalamin biosynthesis I biosynthesis I (Gram- 3-hydroxyacyl-CoA a cis-delta17-3-oxo-C36:1-[acp] 6-phosphate tetrapeptide, tetrapeptide, diphosphokinase: folK 1,4-dihydroxy-2- 5-oxoprolinase: 3-methyl-2- a 5,10- biosynthesis I pyruvate acetyl-CoA dehydrogenase (hep I) a [protein]-S- γ-D-glutamyl-meso- methoxy-1,4- 2-iminosuccinate lyase: pabC folate transformations I dehydrogenase: a thymine in DNA (R)-3- glycan chain 1 glycan chain 2 a pimeloyl-[acp] (7,8-dihydropterin- naphthoyl-CoA negative bacteria) synthetase (acetylating) α-D- methyl-L-cysteine 2,6-diaminopimelate fluoride CrcB fluoride benzoquinol cobinamide pxpC oxobutanoate methylenetetrahydrofolate α hydroxybutanoate cob(I)alamin arg SAM fadB (AMP- : mhpF DHAP -D- D-glucopyranose hydroxylase: quinolinate 6-yl)methyl 4-aminobenzoate synthase: menB kinase: cobU pxpB pxpA arg choline maltotriose glucopyranose 8-amino-7- α-D-galacturonate L-gulonate a 5,10- (S)-3- glucopyranose PliG ubiF synthase: diphosphate 3-methyl-2-oxobutanoate arginine forming): acs [+ 2 isozymes] 1-phosphate oxononanoate 1-phosphate 1,4-dihydroxy-2-naphthoyl-CoA adenosyl-cobinamide methylenetetrahydrofolate hydroxybutanoyl- 1-phosphate maltotriose 6 γ nadA 5,6-dimethylbenzimidazole hydroxymethyltransferase: decarboxylase, glucokinase: N -(3-methylbut- a nascent peptidoglycan a thymine an apo-[c-type (S)-3- DNA containing L-alanyl- -D- salicin 6- D-ribofuranose a [DNA]-3'- a 5'-phospho- a peptide with an S-(1-hydroxy- a peptidyl- an unstable (2E,7Z)- (S)-lactate 3-oxo-(9Z)- 1-chloro-2,4- a uridylylated 4-hydroxy- a nucleoside 6+ a mismatched + taurine ABC synthase: bioF phosphate cob(II)alamin 5,10- CoA acetyl-CoA acetyl-CoA glucosidase: phosphoglucomutase: prephenate hydroxybutanoyl- glutamyl-meso- glutathione an alkylsulfonate RecA filament- Cr Cu 3-demethylubiquinol-8 dihydropteroate 1,4-dihydroxy-2- panB L-ornithine biosynthetic: speA betaine aldehyde glk a sulfurated [sulfur carrier] 2-en-1-yl)- gly with (L-alanyl-γ-D-glutamyl- glycol in DNA a cis-delta11-C30:1-[acp] a malonyl-[acp] a cis-delta9-C28:1-[acp] a malonyl-[acp] hexadecenoyl-CoA cytochrome] a CcmH protein SAM H O a base with lesion phosphate dinitrobenzene 5-phosphate uracil hydroxyl [DNA] an N-terminal 2-oxopropyl) dipeptidase RNA tetradecenoyl-CoA DNA a protein taurine taurine quinolinate enoyl-CoA 2 IMP PII protein adenosine L-threonine triphosphate GMP transporter (8S)-8-amino-7- synthase: folP nicotinate- cobinamide-P methylenetetrahydrofolate malZ pgm adenosine 37 in tRNA meso-2,6-diaminopimeloyl- with reduced L- with an internal CoA diaminopimelate L-alanine -[protein]- Dcp substrate DNA complex enoyl-CoA methyl- 3-demethylubiquinone- naphthoyl-CoA arginine hydratase: RecA filament- ATP- oxononanoate L-gulono- nucleotide--dimethylbenzimidazole reductase: metF putrescine dAdoMet betaine aldehyde cysteine residues L-cysteine hydratase: ZinT quinolinate hydrolase: menI guanylyltransferase: ornithine decarboxylase, phosphoglucomutase: maltose D-alanine) tetrapeptide disulfide bridge DNA complex chromate directed dependent GMP 8 3-O- 7,8- 1,4-lactone phosphoribosyltransferase: cobT 2-dehydropantoate fadJ bifunctional 3-ketoacyl-CoA carboxy-S- DNA putative 6- putative alkanesulfonate - DNA putative fadJ 7,8- D-galactopyranuronate phosphoribosyltransferase cobU a 5-methyltetrahydrofolatemethionine decarboxylase: dehydrogenase: pgm L,D- putative beta-ketoacyl- putative beta-ketoacyl- acyl-CoA murein PII-UMP 4-hydroxy- alanyl peptidyl- stabilisation: mismatch HslVU reductase: methyltransferase: ubiG degradative: adiA enoyl-CoA isopentenyl- thymine thiolase: fadA containing phospho-beta- glutathione-S- monooxygenase: 5'-phosphate repair reductase: putative diaminopelargonic dihydropteroate 1,4-dihydroxy-2-naphthoate cob(II)alamin- synthase: speC agmatine betB amylomaltase: adenosyl-L- thioesterase: inosinate deuridylylation: adenosine aminopeptidase: dipeptidase: replicase: enoyl-CoA repair: (decarboxylating): nadC α-ribazole 5'-phosphate 2-dehydropantoate spermidine superpathway of N-acetylneuraminate degradation Carboxylate Degradation D-glucopyranose adenosine tRNA transpeptidase: ACP synthase: Z4866 ACP synthase: Z4866 thiol:disulfide tripeptide ssuD L-threonine protein recR yieF protease: guaC 2+ adenosylcobinamide-GDP [corrinoid a 5,10- hydratase: hexitol fermentation to lactate, formate, ethanol and acetate glycol DNA acetyl-CoA C- methionine a base nucleosidase: glucosidase: transferase: glycosidase: protein: nucleosidase: Z5187 Cu ATP- acid synthase: bioA ubiquinol-8 dihydrofolate 2-reductase: panE metH ornithine glutaryl-CoA pyruvate fermentation to malQ methylthiolase: ldtD oxidoreductase: yciA amidase: glnD aldolase: pepN deglycase: dcp recF recO hydratase: mutL hslU hslV adenosyltranferase] methylenetetrahydrofolate synthase: glycine betaine fadB 6-phosphate glycosylase: putative beta-ketoacyl- putative beta-ketoacyl- acyltransferase: with lesion Z5177 Z3391 psuG radC a stabilized binding NaMN synthetase: folC agmatinase: degradation acetate and (S)-lactate I synthase: ppnN mpaA rihC hchA fadB mutS mutH IMP L-xylo-hex-3- 2-dehydropantoate decarboxylase: speE D-glucopyranose miaB nth [acyl carrier protein] [acyl carrier protein] ccmH (S)-3- hydrolase: ltaE RecA filament- a properly a peptide Ggt (7R,8S)-diaminononanoate aldehydo-D- speB N-acetylneuraminate fadI cmoA [+ 2 isozymes] (S)-3-hydroxy-(7Z) D-ribose protein of D-ribose 7,8-dihydrofolate ulono-1,4-lactone cobalamin 5'- 2-reductase: ilvC speF crotonyl-CoA D-sorbitol 6-phosphate a nascent peptidoglycan synthase: Z1549 synthase: Z1549 hydroxybutanoyl- an aldehyde sulfite UMP DNA complex Cr 3+ superoxide matched galacturonate nicotinate- 5,10-methylenetetrahydrofolate:glycine gcv system: methylenetetrahydrofolate glutaryl-CoA pyruvate mug β-D-glucose RNA -tetradecenoyl-CoA ribose ABC tetrahydromonapterin phosphate 6 D-ribofuranose pseudouridine a dipeptide dethiobiotin mononucleotide monoglutamate β-alanine hydroxymethyltransferase: glyA dehydrogenase: folD N-acetylneuraminate N -(3-methylbut-2-en- with (L-alanyl-γ-D-glutamyl- D-ala α β an apo-[c-type CoA L-alanyl-D- salicyl alcohol [DNA] a PII protein D-ribofuranose ala a peptide a [protein]- a peptide DNA base pair cob(I)alamin- (R)-pantoate gcvP lpd putrescine spermidine putrescine glucokinase: a 5'-phospho- a [DNA]-3'- , - S-adenosyl-S- 3-phenyl-2- meso- 6-phosphate glycolaldehyde (R)-lactate transport biosynthesis synthase: cobS lyase: nanA 5'-deoxyadenosine 1-yl)-2-(methylsulfanyl) an unsulfurated meso-2,6-diaminopimeloyl- thymine glycol cytochrome]-- thioesterase: tesB 5-phosphate 2,4-dinitrophenyl- 5'-phosphate adenine gly synthetase: bioD adenylyltransferase: a 5,10- gcvH gcvT sorbitol-6-phosphate met unsaturated acetyl-CoA (7Z)-tetradecenoyl-CoA carboxymethyl- a DNA containing hypoxanthine glutamate L-cysteine system [corrinoid crotonate fermentation (to acetate glk 37 [sulfur carrier] [DNA] oxopropanoate a modified diaminopimelate S-glutathione citrate lyase activation nadD methenyltetrahydrofolate 5-formyltetrahydrofolate (E)-glutaconyl- pyruvate adenosine in tRNA glycine) tetrapeptide aldehyde a cis-delta13-3-oxo-C32:1-[acp] a cis-delta11-3-oxo-C30:1-[acp] CcmH disulfide putative OpgH adenosyltranferase] N-acetyl-D-mannosamine 2-dehydrogenase: srlD and cyclohexane carboxylate) L-homocysteine an apurinic/ YgiW dethiobiotin L-galactonate adenosylcobalamin pantothenate a 5,10- cyclo-ligase: fau a (6S)-5- CoA dehydrogenase: ATP-binding nicotinate adenine GTP methenyltetrahydrofolate L-ascorbate cobalamin a tetrahydrofolate butanoyl-CoA D-glucitol-6-phosphate (S)-3- apyrimidinic site 3'-dephospho- NAD salvage pathway I (PNC VI cycle) 5'-phosphate synthetase: methenyltetrahydrofolate formyltetrahydrofolate aceF aceE lpd component dinucleotide GTP a 7,8-dihydrofolate cyclohydrolase: folD adenosyltransferase: N-acetylmannosamine dehydrogenase: Z5618 crotonate D-glucopyranose hydroxybutanoate biotin CoA panC (S)-lactate of transport + + adenosylcobalamin btuR kinase: nanK 6-phosphate D-ribose D-ribose synthase: bioB NAD NAD cyclohydrolase 10 + triphosphoribosyl- an N - NAD 5'-phosphate adenosylcob(III) formyltetrahydrofolate system, synthetase, synthetase, 7,8-dihydroneopterinI: folE dihydrofolate keto-D-fructose 6-phosphate D-mannitol 1-phosphate acetyl-CoA α α α α microcin B17 precursor LolB dephospho-CoA formyltetrahydrofolate phosphatase: cobC alamin-[corrinoid deformylase: purU methenyltetrahydrofolate a [ribosomal 4-amino-4-deoxy- - -D-Kdo-(2->4) UDP-N-acetyl- -D-muramoyl-L- 3-oxo-(7Z)- an apo-[c-type a [DNA]-3'- -Kdo-(2->4) HypE a [protein chain 3-oxo-(11Z)- (2R,3S)-3- a peptide with a [protein]- (S)-3-hydroxy-(5Z) probably 9-mercaptodethiobiotin L-galactono-1,4-lactone glutamine NH - (R)-pantothenate N-acetyl-D-mannosamine 6-phosphate crotonyl-CoA a sulfurated ATP methylphosphonate an [oxidized carbamoyl a ribonucleoside GDP-α-D-glucose a carboxylic ester a ribonucleoside cyanate glycerol 2- RstB 3 3'-triphosphate reductase: folA protein S12] L-arabinopyranosyl -α-D-Kdo-(2->6) alanyl-γ-D-glutamyl-meso-2,6- a cis-delta17-C36:1-[acp] a malonyl-[acp] cytochrome] -α-Kdo-(2->6) hydrogenase (R)-β-lysine elongation factor 2,3- ser peptide containing an N-terminal thr AMP trp PLP ribose synthase: citG NAD + synthetase, adenosyltranferase] cyclohydrolase: folD 1-butanal phosphate hexadecenoyl-CoA hydroxyl octadecenoyl-CoA formate triphosphate XTP isopropylmalate diphosphate GTP L-tyrosine -tetradecenoyl-CoA dIDP XTP phosphate dependent: dependent: [sulfur carrier] 89 DsbA protein] phosphate 34 dihydroxybenzoate 2'-(5''-triphospho- dihydroneopterin dihydrofolate phosphoribosylglycinamide adenosylcobalamin enoyl-CoA acetyltransferase: pta L-aspartate ditrans,octacis- -lipid A (E. coli) diaminopimeloyl-D-alanyl-D-alanine with reduced L- -(lauroyl)-lipid a myristoyl-[acp] maturation protein P]-L-lysine 3-isopropylmalate ribonucleoside- azole residues L-methionine putative enoyl-CoA pyridoxal putativespecific biotin nadE nadE glutamine dependent: nadE pantothenate N-acetylmannosamine- mannitol-1-phosphate crotonyl-CoA xanthosine triphosphate α-D-ribosyl)-3'- triphosphate 2'- reductase: folM formyltransferase 1: purN 10 Metabolic Regulator undecaprenyl phosphate cysteine residues IV (E. coli) dehydrogenase: oxidoreductase, hydratase: + an N - alcohol 6-phosphate hydratase: A GDP-glucose diphosphate phosphatase: nucleoside permease of synthase: bioB NAD synthetase, kinase: coaA 5-dehydrogenase: mtlD phosphate α-D-ribose 1- 3-ketoacyl-CoA putative 3-ketoacyl-CoA carboxylesterase: pyrophosphatase: rdgB + Biosynthesis ribonucleoside- leuB Fe-S subunit: fadB cyanase: XTPase: dephospho-CoA NAD epimerase: folX NH -dependent: nadE folate transformations III (E. coli) formyltetrahydrofolate dehydrogenase: aldehyde epimerase: nanE fadJ acetyltransferase: eutD protein muramoylpentapeptide putative beta-ketoacyl- carbamoyl- EF-P-lysine enterobactin glucosyl reductase: microcin B17 methionine threonine ybhA diphosphate D-ribose ribose ABC D-ribose PqqL 3 (R)-4'- enoyl-CoA methylphosphonate thiolase: fadA exodeoxyribonuclease thiolase: fadA bioH AMP Z4217 tryptophanase: yjjX apo-citrate lyase lipoate 7,8-dihydromonapterin adhP reductase: enoyl-CoA methylthiotransferase: lipid IV 4-amino-4-deoxy- carboxypeptidase: dacA ACP synthase: Z4866 myristoyl-acyl -[HypE] lysyltransferase: triphosphate synthase: hydrolase: gmm 3-isopropylmalate nrdF nrdE precursor aminopeptidase: aldolase: enoyl-CoA cynS kinase: ndk transport biotin BioP biotin biotin L-ascorbate a tetrahydrofolate nicotinate adenine dinucleotide NMN adenosylcobalamin A kinase tnaA pyridoxal phosphopantothenate ppGpp metabolism N-acetyl-D-glucosamine 6-phosphate hydratase: 5-triphosphate acetyl-CoA C- VIII of prophage acetyl-CoA C- reductase: nrdD carboxylesterase: pyrophosphohydrolase: [+ 7 isozymes] glycerol phosphoribosyl- salvage I triphosphate alcohol yahK hydratase: acetyl phosphate rimO L-arabinosyltransferase: muramoyl pentapeptide putative beta-ketoacyl- carrier protein- ligase: hypF epmA entD entF dehydrogenase protease: map ltaE a [protein]- hydratase: phosphatase: system a tetrahydrofolate fadJ synthase: phnI acyltransferase: CP-933U: exoU acyltransferase: yjfP mazG ribonucleoside- (GTP): adk dephospho-CoA dehydrogenase: [+ 3 isozymes] (E)-glutaconyl- fadB arnT [acyl carrier protein] dependent entE entB (decarboxylating) tldE tldD L-tyrosine fadJ cof dITP XDP N-acetylglucosamine- F6P carboxypeptidase: dacC phnL phnH phnG fadI [+ 7 isozymes] fadI diphosphate (2E,5Z)- ribose transferase: citX (R)-lipoate nicotinate-mononucleotide pppGpp CoA enoyl-CoA (S)-3- acetate kinase: ackA C1 Compound Utilization and Assimilation a 2'- GDP D-glucopyranose XMP : dmlA ammonium CO D-ribose D-ribose adhE a [ribosomal synthase: Z1549 acyltransferase: a HypE [a protein chain reductase: phosphate 2 a holo [citrate guanosine-5'- 6-phosphate 4-methyl-2- ADP GDP indole pyruvate tetradecenoyl-CoA pyridoxal permease FimC putative adenylyltransferase: nadD dihydrofolate reductase: folA methionine synthase: metH fructose-1,6- hydratase: hydroxybutanoyl- acetate kinase: purT 5'-deoxyadenosine an unsulfurated 4'-α-L-Ara4N-α-Kdo- an apo-[c-type lpxM met a peptide acetaldehyde gly YfgM lyase acyl- guanosine 3'-diphosphate triphosphate,3'-diphosphate deacetylase: nagA 6-phosphofructokinase: pfkA met protein S12]-3- UDP-N-acetylmuramoyl-L- α-D-ribose-1- a [reduced hydrogenase elongation factor an alcohol a carboxylate a 2'- nrdB nrdA lipoate- acyl carrier protein metabolism D-threo-7,8- butan-1-ol bisphosphatase: fbp fadB CoA [sulfur carrier] di-trans,octa-cis- α cytochrome] with a [DNA]-3'- a 2'- 5'-triphosphate enterobactin oxopentanoate microcin B17 thiamine dihydrofolate 5'-triphosphate 3'- phosphatase: gpp 6-phosphofructokinase: pfkB formaldehyde assimilation II (assimilatory RuMP Cycle) methylsulfanyl- (2->4)- -Kdo-(2->6)- D-ala alanyl-γ-D-glutamyl-meso-2,6- acetyl-CoA (5Z)-tetradecenoyl-CoA maturation EF-P]-N-(β-L- acetyl-CoA palmitoleoyl-CoA a peptide glutathione- carrier protein] protein thioredoxin acetate formate assimilation into 5,10- undecaprenyl phosphate methylphosphonate- DsbA protein] deoxyribonucleoside deoxyribonucleoside dihydroneopterin diphosphate reductase: folM GTP D-glucosamine 6-phosphate [+ 3 isozymes] 3-hydroxyacyl-CoA 89 [P4'-α-L-ara4N]-lipid A adenine a dislufide bridge hydroxyl α protein-S- 34 + + glutaredoxin citrate lyase pathway NaMN nicotinamide folate polyglutamylation diphosphatase: spoT (S)-3- methylenetetrahydrofolate L-aspartate diaminopimeloyl-D-alanine a cis-delta19-3-oxo-C38:1-[acp] 5-triphosphate 5'-monophosphate -D-Kdo-(2->4) lysyl)-L-lysine 5'-diphosphate Na MdtM Na ligase putative synthetase/ β dehydrogenase: D-ribulose a holo acyl- dihydromonapterin salvage I pyrophosphokinase: relA -D-fructose 1,6-bisphosphate glutaryl-CoA hydroxybutanoyl- formaldehyde F6P -α-D-Kdo-(2->6) carboxamide redox reactions synthetase: A: Z5988 5,10-methylenetetrahydrofolate:glycine gcv system: gcvP MlaC carrier protein NAD phosphorylation amidase: yjfC a 7,8-dihydrofolate a 5-methyltetrahydrofolate fadJ 5-phosphate -lipid A (E. coli) citC [(R)- reductase: folM thiamine an oxidized a tetrahydrofolate CoA formate glutathione and dephosphorylation [+ 2 isozymes] hydroxymethyltransferase: glyA lpd gcvH gcvT mixed acid fermentation 3-hydroxyacyl-CoA 6-phosphofructokinase: an acetyl-holo lipoyl]adenylate thiamine thioredoxin + + YgfX oxidized 5,6,7,8- nicotinate GTP ppGpp 3-hydroxyacyl-CoA Na ChaA Na kinase: a (6S)-5-formyltetrahydrofolate dehydrogenase: pfkA 6 glutaredoxin: [citrate lyase acyl- putative tetrahydromonapterin + α-D-glucosamine 6-phosphate putative aldolase: Z5687 dehydrogenase: a pyrimidine base a 5-[(methylamino) a CcmE-[c-type a CcmG protein a [protein disulfide an intra- Kdo - 1-myristoyl- a 5'-half-tRNA a (3R)-3- β-D-fructofuranose an N-acylated N -(6-phospho-D- a 5'-NAD- a 5'-phospho- a [protein]- (2E,9Z)- a DNA with holo-[acyl- NAD phosphoribosyltransferase: folylpoly-γ- 5,10-methylenetetrahydrofolate:glycine fadB 10 a [disordered-form [Fe-S] an S-sulfanyl-[L- a [reduced CTP 2 2'-UMP carrier protein] lipoate- thiK 3-oxopimeloyl- 6-phosphofructokinase: an N - a [reduced octanoate 2-oleoylglycerol oxalate acetyl-CoA ribonucleoside- NADH Tyr an acetyl ester RNA ATP RNA L-threonine 3- grxA pncB phosphoenolpyruvate [+ 3 isozymes] fadJ lesion in DNA methyl]-2- cytochrome-- with reduced isomerase] protein disulfide (palmitoleoyl) a myristoyl-[acp] sn-glycerol a myristoyl-[acp] a 3'-half-tRNA molecule with hydroxyhexacosanoyl- 1-phosphate aliphatic-L- fructosyl)-L-lysine capped-[RNA] ATP D-tyrosyl-tRNA L-histidine octadecenoyl-CoA a myristoyl-[acp] unresolved carrier- thiamine thioredoxin glutamate hydroxymethyltransferase: glyA 5,10- 5-formyltetrahydrofolate glucosamine- CoA pfkB formyltetrahydrofolate geranyl 34 cluster scaffold protein] cysteine desulfurase] DsbD protein] DsbD protein] dATP ITP O-phosphate YgiS a glutaredoxin protein acyl carrier protein GDP diphosphokinase: spoT guanosine-3',5'- 3-hydroxyacyl-CoA hexulose 6- selenophosphate thiouridine CcmH disulfide] cysteine residues carrying a -lipid IV 3-phosphate molecule with a 2',3'-cyclic [acp domain within amino acid [RNA] protein- enoyl-CoA recombinational protein] phosphate nicotinate acetoacetyl-CoA A enoyl-[acyl- + + reductase: synthetase: 10 methylenetetrahydrofolate cyclo-ligase: fau 6-phosphate triose-phosphate β-D-fructose 1,6- diphosphate pyrophosphohydrolase: hydratase: Na NhaA Na dithiol ligase phosphodiesterase: an N - thymidylate synthase: thyA methylenetetrahydrofolate GDP bis(diphosphate) 3'- dehydrogenase: phosphate methenyltetrahydrofolate in tRNA complex disulfide bond putative a 5'-OH end phosphate end a fatty acid synthase](3R)-3- fructoselysine histidine carrier- or Holliday synthase: thiamine trxB pyridine nucleotide NAD folC a 5,10- reductase: metF GDP kinase: ndk phosphoenolpyruvate pyruvate kinase: pykA deaminase: nagB isomerase: tpiA bifunctional short chain acyl-CoA putative nudB pyrophosphatase: rdgB RNA NADH acetylesterase: poly(A) thiamine A: Z5988 acpH formyltetrahydrofolate dehydrogenase: folD pyrophosphokinase: relA diphosphatase: spoT fadB bisphosphate cyclohydrolase: folD thiol- hydroxyacyl-[acyl- putative autokinase: RNase fadJ junctions, glutaredoxin: acpS transhydrogenase: kinase: methylenetetrahydrofolate a 5,10-methylenetetrahydrofolate a 5,10-methenyltetrahydrofolate carboxylase: ppc pyruvate kinase: pykF D-glyceraldehyde 3-phosphate DHAP scaffold diacylglycerol myristoyl-acyl acyl-[acp]:1-acyl- YfdE: yfdE 6-phosphate RNA 5' pyrophosphatase: D-Tyr-tRNA Tyr protein] polymerase: thiamine ABC thiamine a [lipoyl-carrier monophosphate GDP kinase: adk 2-methylcitrate cycle I DNA thiol- synthetase: fadK disulfide aldolase: Z5687 nucleoside triphosphate nucleoside triphosphate decapping aes envZ PH: rph uridine grxC 10-formyl- F6P tRNA 2- protein for iron- thiol:disulfide kinase: Z1139 carrier protein- sn-glycerol-3- 2'-5' RNA carrier protein] hippuricase: deglycase: frlB adenylyl enoyl-CoA reductase: created by RecADNA transporter 6 [+ 2 isozymes] kinase: thiL pntB pntA nadK methylene- 3-hydroxypimeloyl- putative a 5,10- glycosylase: fatty acyl-CoA putative hydrolase: nudC deacylase: dtd [+ 2 isozymes] pcnB protein]-N -[(R a tetrahydrofolate tetrahydrofolylpolyglutamate glyceraldehyde- acetoacetyl-CoA disulfide exchange: dehydratase: fabZ Z5522 pyrophosphohydrolase: pyrophosphohydrolase: [+ 17 isozymes] hydratase: helicase: + + NapF [+ 2 isozymes] methenyltetrahydrofolate GDP CoA methenyltetrahydrofolate nei selenouridine sulfur cluster oxidoreductase: putative dependent phosphate 2-O- ligase: nudC transferase: a [protein]- fabI thr Na MdfA Na )-lipoyl]-L-lysine thiamine a reduced tetrahydrofolylpolyglutamate synthetase: folC oxaloacetate pyruvate 3-phosphate acetyl-CoA propanoate aldolase: exchange: synthetase: fadD dsbD aldolase: Z4881 mazG mazG fadB a (2E)-tetradec- recG a protein with cyclohydrolase: folD 6-phosphofructokinase: F6P synthase: selU assembly: iscU ccmG diacylglycerol acyltransferase: acyltransferase: thpR 3-hydroxyacyl- β-D-glucose rtcA β N-phospho- synthetase: folC 10 fructose-1,6- Z5687 reduced - a nucleoside a DNA segment reduced L- diphosphate thioredoxin an N - pfkA dehydrogenase: gapA methylenetetrahydrofolate dsbD [acp] acetate oxalyl-CoA dAMP IMP RNA (S)-3-hydroxy-(9Z) 2-enoyl-[acp] an apo acyl- + kinase: Z1578 lpxM plsC 6-phosphate lys AMP acetate an alcohol L-histidine RNA NADP a 5,10- bisphosphatase: fbp propanoate:CoA [+ 3 isozymes] dehydrogenase: folD a [DNA]- two reduced nicotinamide D- Tyr diphosphate -octadecenoyl-CoA EcnB cysteine residues formyltetrahydrofolate an N 10 -formyltetrahydrofolate 6-phosphofructokinase: glyceraldehyde- a 5'-phospho- a modified a (2E)-hexacos-2-enoyl-dehydratase: fabA an aliphatic a carboxylate a 5'-phospho- D-tyrosine a tRNA carrier protein malate D-lactate 4-oxo-2-pentenal a 5-methylaminomethyl- (2E)-3,7- an S-sulfanyl-[cysteine a c-type a [protein disulfide an [oxidized DHAP D-glyceraldehyde NMN a 5'-(5'- + + methylenetetrahydrofolate probable pyruvate [+ 3 isozymes] 2-hydroxy-6- ligase (AMP- nucleotide- AMP octanoyl-CoA diphosphate cysteine residues a ligated tRNA L-amino acid ribonucleotide Na NhaB Na pfkB 3-phosphate a 5,10- [DNA] nucleobase 2-selenouridine 34 dimethylocta- a CcmH- a c-type an [oxidized DsbD protein] CDP [acp domain within adenosine-[RNA] OpgD dehydrogenase: mdh formate lyase activating dehydrogenase: ldhA acetyl-CoA forming): acs 3'-phosphate desulfurase]-[disordered-form cytochrome isomerase] in a protein 1-oleoyl-sn-glycerol (Kdo) -lipid 1,2-dimyristoyl- diphosphoadenosine)- oxocyclohexane- D-glyceraldehyde CcmG disulfide cytochrome 2 with a 2'-5' linkage Tetrapyrrole Biosynthesis [+ 23 isozymes] dehydrogenase: gapC DHAP methylenetetrahydrofolate in tRNA 2,6-diene-1-thiol scaffold protein] complex biogenesis DsbD protein] with reduced L- 3-phosphate sn-glycerol a fatty acid synthase] (ribonucleoside)-[RNA] enzyme 2: pflC β-D-fructose 1,6-bisphosphate 1-carbonyl-CoA [+ 3 isozymes] 3-phosphate A, cold adapted protein CcmE cysteine residues 3-phosphate [+ 3 isozymes] (R)-lactate 2+ 2+ 13-DPG propanoyl-CoA Mn MntP Mn tetrapyrrole biosynthesis (S)-malate transketolase: PspC superpathway of heme b biosynthesis from uroporphyrinogen-III siroheme biosynthesis Amino Acid Biosynthesis I (from glutamate) tktB a 5- an [RNA]-3'- galactosyl-glucosyl- a [50S ribosomal 1-palmitoyl- a 2'- a (3R)-3- iron(III)-[N-(2,3- a trans-2- Ivy phosphoglycerate 6-oxocyclohex- S-adenosyl-S- (acetamidomethyl) α a 2-oxo 37 a dipeptide with a (2E,5Z)- guanosine 2'- putative aldolase: Z5687 acetate 2-methylcitrate 34 UDP- -D-glucose 2-oxoglutarate 1-methyl-dATP a (4Z)-hexadec- an adenosine a cis,cis-delta15,27- a uracil in DNA ATP NMN N-methyl-L- propionamide fumarase C: fumC acetyl-CoA formate hydroxyuridine ribonucleoside- ATP (heptosyl) -Kdo - 2-oxoglutarate subunit protein met a malonyl-[acp] DMAPP sn-glycerol a myristoyl-[acp] deoxyribonucleoside hydroxytetracosanoyl- 5'-deoxyadenosine dihydroxybenzoyl)-L- glutathione methylglyoxal CDP-glycerol L-selenocysteine citrate met enoyl-[acyl- FMN a protein kinase: pgk 1-ene-1- transketolase: carboxymethyl- phosphonate 3 2 carboxylate [DNA] C-terminal L-proline dodecenoyl-CoA monophosphate uroporphyrinogen-III uroporphyrinogen-III [+ 3 isozymes] synthase: prpC reductive a 5'-hydroxy- GTP 81 4-enoyl-[acp] in tRNA 3-hydroxyC46:2-[acp] tryptophan superpathway of L- glu [+ 5 isozymes] carbonyl-CoA tktA L-homocysteine in tRNA 2',3'- lipid A-bisphosphate L16]-L-arginine 3-phosphate 5'-triphosphate [acp domain within serine trimer] complex 3-oxoacyl-[ACP] putative enoyl-CoA carrier protein]enoyl-[acyl- FMN predicted superpathway of aromatic amino acid biosynthesis superpathway of L- superpathway of L- superpathway of branched chain amino acid biosynthesis superpathway of L- L-histidine biosynthesis superpathway of L-methionine L-arginine biosynthesis IV (archaea) uroporphyrinogen monocarboxylic ribonucleotide- L-amino acid N- serine tryptophan biosynthesis citrate synthase: gltA acetaldehyde formate hydrogenlyase triose-phosphate 3-phospho-D-glycerate (2S,3S)-2- cyclophosphate a fatty acid synthase](3R)-3- reductase: fabG synthetase/ hydratase: carrier- phosphatase: transporter isoleucine biosynthesis I tyrosine biosynthesis phenylalanine biosynthesis glutamate--tRNA phosphate acid cycle 3'-[RNA] α-D-ribose-1-(2-N- 1-methyl-dATP uracil-DNA NMN Xaa-Pro acyltransferase: protease: sorbose sorbose biosynthesis (transsulfuration) uroporphyrinogen III methylase: hemX fumarate methylcitrate D-erythrose D-xylulose protein- methionine- tRNA DNA hydroxyacyl-[acyl- 5'-deoxyadenosine ferric-chelate glyoxalase N-methyl-L- citrate lyase: amidase: yjfC fadJ ybjI complex of OsmY D-erythrose D-erythrose ligase: gltX acetyltransferase: pta dehydrogenase: adhE complex: hycE isomerase: tpiA tRNA U34 acetamidomethylphosphonate) UDP-D- demethylase: putative beta- acyl-[acp]:1-acyl- putative beta- glycosylase: adenylyltransferase: dipeptidase: protein] YhhQ phosphoenolpyruvate D-erythrose phosphoenol pyruvate decarboxylase: hemE S-adenosyl-L- D-glyceraldehyde 3-phosphate DHAP phosphoglyceromutase 4-phosphate 5-phosphate acetyl-CoA arginine oxo-acid nucleosidase: mtn I: gloA selenocysteine citE citD citF mnaT lon a sorbose D-erythrose phosphoenol PRPP Glu 2-methylcitrate ketoacyl-ACP dimethylallyltransferase: polymerase: carrier protein] reductase: tryptophan putative enoyl-CoA FMN 4-phosphate 4-phosphate oxaloacetate thr glu an L-glutamyl-[tRNA ] phosphate acetaldehyde hycB hycG hycC 6-hydroxycyclohex- carboxymethyltransferase: -5-triphosphate synthase: glucose:(glucosyl) alkB sn-glycerol-3- ketoacyl-ACP ung nadR pepQ lyase: sufS reductase: 4-phosphate pyruvate 4-phosphate pyruvate oxaloacetate superpathway of L-lysine, L-threonine and L-methionine biosynthesis I methionine:uroporphyrinogen- fumarate reductase: citrate phosphoglycerate 2: gpmB dehydratase: RNA α oxygenase: transaminase: miaA dehydratase: fabZ N-acetyl-L- synthetase/ phosphatase: aspartate acetyltransferase: eutD dehydrogenase: eutE hycD hycF fdhF 1-ene-1- cmoB phnI phnL phnH phnG LPS -1,3- synthase: phosphate 2-O- polB nfeF reductase: Z4865 oxidase: solA hydratase: fabI guanosine a peptide 3-deoxy-7- acetolactate ATP coproporphyrinogen III III C-methyltransferase: cysG frdD frdC frdB frdA glyceraldehyde- mutase: gpmA superpathway of hexuronide transaldolase ligase: rtcB roxA ybdL methionine transaminase: threonine citrate hydro-lyase: acnB 2,3-bisphosphoglycerate- prpD glucosyltransferase: Z4866 acyltransferase: [+ 4 isozymes] 3-hydroxyacyl- a cis,cis-delta15,27- amidase: ygiC fadB an acyl-[acyl- yigB predicted 3-deoxy-7- phosphoheptulonate synthase phosphoribosyltransferase: aspartate glutamyl-tRNA precorrin-1 3-phosphate carbonyl-CoA and hexuronate degradation probable (R)-S- cytidine (S)-3-hydroxy-(5Z) 3-deoxy-7- 3-deoxy-7- oxaloacetate independent A: talA 6 5-deoxy-D-ribose 3-oxo-C46:2-[acp] an apyrimidinic uracil + sn-glycerol acetate oxaloacetate carrier protein] transporter phosphoheptulonate synthase: aroF aspC deaminase: transaminase: succinate citrate hydro-lyase (cis- cis-2- α waaO formaldehyde succinate N -(3-methylbut- plsC [acp] N-(2,3- NAD a proteinogenic propanoate riboflavin sorbose sorbose OpgG II, valine hisG reductase: hemA acetaldehyde CO H dehydrogenase: gapA β pyruvate a 5-(carboxymethoxy) -D-ribose 1- adenine 2+ lactoylglutathione pro selenide -dodecenoyl-CoA phosphoheptulonate phosphoheptulonate coproporphyrinogen III coproporphyrinogen heme b biosynthesis acetyl phosphate 2 2 phosphoglycerate a -D- [+ 2 isozymes] a [50S ribosomal dATP 4-(methylsulfanyl) Fe site in DNA formaldehyde 3-phosphate ala complex of ilvA aspC methylaconitate 34 a proteinogenic 2-en-1-yl)- a (2E)-tetracos-2-enoyl-dehydratase: fabA dihydroxybenzoyl) amino acid trp synthase: aroF [+ 2 isozymes] asp insensitive, an [amino-group S-adenosyl-L- aconitate-forming): acnA glyceraldehyde- formate lyase uridine in tRNA SAH (acetamidomethylphosphonate) succinate synthase: aroF synthase: aroF 1-(5-phospho- aspartate dehydrogenase: hemN III oxidase: hemF I (aerobic) mutase: gpmM glucuronoside GMP adenine subunit protein L16]- -2-oxobutanoate a (6Z)-3-oxooctadec- adenosine 37 [DNA] [acp domain within a sorbose RseA 3-deoxy-D-arabino- [+ 2 isozymes] small carrier protein]- (S)-4-amino-5-oxopentanoate methionine:precorrin-1 C- ethanol (2R,3S)-2- RNA galactosyl-(glucosyl) amino acid 1-palmitoyl- -L-serine trimer [+ 2 isozymes] [+ 2 isozymes] β-D-ribosyl)-ATP transaminase: aspC cis-aconitate acetate kinase: ackA 3-phosphate cyclohex- partial beta-D- D-sedoheptulose D-glyceraldehyde activating 5-triphosphate UDP (3R)-3-hydroxy- 6-enoyl-[acp] [+ 2 isozymes] putative oxygen methylisocitrate in tRNA a fatty acid synthase] 2+ heptulosonate aspartate (2Z)-2-aminobut- asp C-terminal-γ- methyltransferase: cysG dehydrogenase: adhP -(heptosyl) -Kdo - 81 2-myristoyl 2+ subunit: ilvM uroporphyrinogen-III dehydrogenase: gapC 1,5-diene-1- 7-phosphate 3-phosphate enzyme 2: pflC 2 3 2 L-arginine Ni Ni 3-deoxy-D-arabino- phosphoribosyl-ATP glutamate-1- independent acetate kinase: purT 2-phospho-D-glycerate glucuronidase: hydro-lyase: acnB CorA 7-phosphate kinase: 2-enoate (L-glutamyl) protoporphyrinogen IX uroporphyrinogen D-threo-isocitrate ethanol lipid A-bisphosphate phosphatidate Mg 2+ Mg 2+ 3-deoxy- [+ 3 isozymes] 3-deoxy- pyrophosphatase: asp semialdehyde 2,1- coproporphyrinogen uroporphyrinogen carbonyl-CoA uidA_1 [+ 3 isozymes] RcsF heptulosonate metL aspartate -L-glutamate dehydrogenase: adhE 13-DPG (2R,3S)-2- 3-dehydroquinate D-arabino- D-arabino- aminomutase: hemL III methylase: hemX decarboxylase: hemE hydro-lyase: acnB acetate transketolase: 7-phosphate [+ 2 isozymes] hisI kinase: III oxidase: chuW enolase: eno partial beta-D- methylisocitrate synthase: aroB (S)-2-acetolactate α GMP-N-ε-(N-α-acetyl 2 heptulosonate heptulosonate aspartate D-threo-isocitrate tktB UDP-N-acetyl- undecaprenyldiphospho- a protein with a [disulfide- -Kdo-(2->4)- N-acetyl-muramoyl-(L- a single stranded a 1,2-diacyl- CTP N - (4S)-4-hydroxy- 2''-O-acetyl- a [protein]-L- L-glycero- ω 1-(5-phospho-β- metL precorrin-2 coproporphyrinogen III ethanol glucuronidase: a uracil in DNA (I) NADP + a reduced a palmitoyl-[acp domain a cis,cis-delta19,31- a cis-delta19-3- FMN NAD(P)H H + β-aspartyl dipeptide [DNA] phytol acetamide N - an unfolded RsxE 3-dehydroquinate 7-phosphate 7-phosphate 5-aminolevulinate protoporphyrinogen hydro-lyase (cis- phosphoglycerate pyruvate α-D-glucosamine a 5'-hydroxy- bond carrier α-Kdo-(2->6)- a palmitoleoyl-[acp] alanyl-γ-D-glutamyl-L- DNA with ring- an N-terminal lysine methyl ester) PLP D-ala L-allo-threonine ADP-ribose ω a protein L-galacto- ATP biotin Mg 2+ MgtA Mg 2+ L-aspartyl- (2R)-2,3-dihydroxy-3- D-ribosyl)-AMP kinase: metL uidA_2 transketolase: N-acetylmuramoyl-L- an [RNA]-3'- GTP reduced L- dGTP sn-glycerol flavodoxin within a fatty acid synthase] succinylglutamate 3-hydroxyC50:2-[acp] oxo-C38:1-[acp] 2-oxoglutarate proline ( = 180) synthase: aroB 3-dehydroquinate 2-iminobutanoate [+ 2 isozymes] protoporphyrinogen IX kinase: pgk cyclohex-1-ene- 2-methylisocitrate ribonucleotide- 5'-phosphoramidate 3' to 5' alcohol putative phosphocreatine protein 4-phosphate 3-dehydroquinate + an [amino-group oxidase: hemG coproporphyrinogen aconitate-forming): acnA tktA alanyl-γ-D-glutamyl-meso ribonucleoside- cysteine residues protein] carrying lipid IV (E. coli) lysyl-D-alanyl-D-alanine) opened apurinic/ L-cysteinyl- putative beta- 3-oxoacyl-[ACP] 3-oxoacyl-[ACP] peptidyl-prolyl octuluronateL-glycero- methylbutanoate:NADP 3-dehydroquinate [+ 2 isozymes] precorrin-2 1-carbonyl-CoA lyase: prpB A CpoB phosphoribosyl- porphobilinogen superpathway of Clostridium D-glucopyranuronate 3'-[RNA] a disulfide bond apyrimidinic site [YedK-protein] proofreading cis-trans alanyl dehydrogenase: synthetase/ synthase: aroB oxidoreductase synthase: aroB L-aspartyl- carrier protein]- dehydrogenase: cysG III oxidase: hemF -2,6-diaminopimeloyl- 3'-phosphate ketoacyl-ACP reductase: fabG reductase: fabG 2-keto-4- 2''-O-acetyl- L-galacto- ATPase: 3-dehydroquinate 3-dehydroquinate aspartate- AMP synthase: hemB D-threo-isocitrate acetobutylicum acidogenic fermentation 3-phospho-D-glycerate bifunctional putative flavodoxin- FMN isoaspartyl exonuclease: aminopeptidase: adhP amidase: yjfC 4-phosphate L-aspartyl-4-phosphate C-terminal-γ- phosphoenolpyruvate D-xylulose D-ribose 5- D-alanyl-D-alanine palmitoleoyl D-alanyl-D-alanine purine nucleoside synthase: Z4866 D-alanine succinylglutamate putative beta- putative beta- L-allo- ADP-ribose isomerase: octuluronate biotin-ATP ravA dehydratase: aroD (isomerizing): ilvC cyclohydrolase: protoporphyrinogen uracil DNA diacylglycerol + reductase: hydroxyglutarate dipeptidase: fructose FrwD fructose semialdehyde 3-dehydroquinate protoporphyrinogen IX pyruvate succinate 5-phosphate phosphate 3'-PO4/5'- protein disulfide NADP transaminase: desuccinylase: astE dnaQ ppiB pepN alcohol putative ligase: birA 3-dehydroquinate (2R)-2,3- 3-dehydroquinate (5-phospho- dehydrogenase: hemG sirohydrochlorin pyruvate dGTP acyltransferase: carboxypeptidase: genome phosphoramidase: putative beta- ketoacyl-ACP ketoacyl-ACP fre aldolase: eda threonine deacetylase: L-glycerokinase:- ydjH dehydrogenase: hisI aspartate- porphobilinogen isocitrate phosphate phosphoglyceromutase phosphoenolpyruvate pyruvate kinase: pykA OH RNA oxidoreductase: glycosylase kinase: Z1139 reductase: glyA iadA [+ 2 isozymes] MreB dehydratase: aroD dihydroxy-3- β aspartate- L-glutamyl)- phosphoglycerate cyclohexane-1- N-acetylglucosaminyl triphosphohydrolase: dgt lpxP dacC maintenance hinT ketoacyl-[acyl reductase: Z4865 reductase: Z4865 aldolase: ltaE a 2'- ymdB [+ 4 isozymes] a peptide dehydrogenase: synthetase/ L-galacto- creatine a protein 3-dehydroshikimate asd 2-oxobutanoate 1-(5-phospho- -D-ribosyl)- semialdehyde a late step of dehydrogenase: icd phosphate 2: gpmB synthetase: ppsA pyruvate kinase: pykF ligase: rtcB dnaJ (G:U putative fpr a [protein]-L- HdeA 3-dehydroquinate methylbutanoate 3-dehydroquinate L-glutamate sirohydrochlorin carbonyl-CoA ribulose- ribose-5- transferase: murG protein: yedK carrier protein] a cis,cis-delta19,31- a cis-delta19-3- deoxyribonucleoside adhE amidase: ygiC octuluronate- 5-[(5-phosphoribosylamino) dehydrogenase: semialdehyde hydroxymethylbilane protoheme IX acetyltransferase: pta mutase: gpmA 2,3-bisphosphoglycerate- aldehydo-D- aldehydo-D- specific): nth diacylglycerol proline (ω = 0) biotinyl-5'- dehydratase: aroD dehydratase: aroD 3-oxo-C50:2-[acp] hydroxyC38:1-[acp] + fructose FrwB fructose 3-dehydroshikimate shikimate L-aspartate 4- acetolactate 2,3-dihydroxy- dehydrogenase: asd ferrochelatase: cysG 2-oxoglutarate galacturonate glucuronate phosphate 3- phosphate a [disulfide-bond Kdo - N-acetyl-muramoyl-(L- synthase: Z1549 glu succinate FMNH NAD(P) glyoxylate pyruvate a proteinogenic 5'-monophosphate phytenal acetate 1-phosphate methylideneamino]imidazole- asd synthase: hemC synthesis: hemY acetyl-CoA phosphate independent pyruvate 2 α kinase: Z1578 a 3-oxooctadecanoyl- pyridoxamine pyruvate 2 asp adenylate dehydrogenase: semialdehyde epimerase: isomerase a protein with γ N- -acetyl lysine + acetaldehyde acetate ADP-D-ribose synthase isovalerate 4-carboxamide protoporphyrin IX D-galacturonate D-glucuronate lipid II (meso GMP carrier protein] α β (palmitoleoyl) alanyl- -D-glutamyl- D-ala a single stranded NADPH an oxidized H [acp domain within 5'-phosphate amino acid gly shikimate 3-dehydroshikimate 3-dehydroshikimate siroheme acetyltransferase: phosphoglycerate D-glucarate UDP a disulfide bond a [DNA]-3'- , - uracil triphosphate methyl ester GMP aroE homoserine II, valine dehydratase: L-aspartate 4- L-aspartate 4-semialdehyde preuroporphyrinogen protoporphyrin IX isomerase: rpe A: rpiA RNA with reduced L- a 5'-phospho- 2'-deoxyguanosine -lipid IV L-lysyl-D-alanine) DNA-YedK flavodoxin 1-(5-phosphoribosyl)-5- an [amino-group eutD mutase: gpmM isomerase: uxaC diaminopimelate containing) unsaturated A a fatty acid synthase] dehydrogenase: dehydrogenase: semialdehyde cyclohexane- degradation I [DNA] thiazolidine linkage CDP FtsP YbdG shikimate shikimate insensitive, ilvD shikimate [(5-phosphoribosylamino) carrier protein]- ferrochelatase: hemH acetyl phosphate probable pyruvate uxaC cysteine residues aldehyde a phosphatidate predicted aroE ferrochelatase: hemH 1-carboxylate dehydrogenase: metL dehydrogenase: small 3-methyl-2- dehydrogenase: methylideneamino]imidazole-4- homoserine uroporphyrinogen- [+ 2 isozymes] 2-phospho-D-glycerate formate lyase activating D-tagaturonate transporter 4-hydroxy- C-terminal-γ- D-glucarate shikimate ydiB homoserine III synthase: hemD [+ 2 isozymes] D-fructuronate fructose fructose homoserine aroE subunit: ilvM oxobutanoate aroE carboxamide isomerase: hisA dehydrogenase: (L-glutamate 5- acetoacetyl-CoA acetate kinase: ackA enzyme 2: pflC tagaturonate complex dehydrogenase: tetrahydrodipicolinate dehydrogenase: metL protoheme (S)-lactate D-glucarate dehydrogenase: shikimate [+ 3 isozymes] shikimate metL semialdehyde-2- enolase: eno [+ 3 isozymes] D-mannonate α-D-ribose-1-(2-N- di-trans,octa-cis core oligosaccharide- di-trans,octa-cis 2-phospho-4-(cytidine 5'- a 5'-half-tRNA a [protein] N- [a protein chain 4-(cytidine 5'- D-myo-inositol of Fructose ydiB shikimate phosphoribulosylformimino- synthase: dapA homoserine uroporphyrinogen-III protoheme superpathway of glycolysis and the Entner-Doudoroff pathway 3-hydroxyacyl-CoA acetate kinase: purT reductase: dehydratase: α 3-oxo-(7Z)- uridine L-alanyl-L- hydrogen a protein thrA dehydrogenase: 2-isopropylmalate valine homoserine oxidoreductase: Reactive Blue 5 UDP- -D-glucose a long-chain fatty acyl- a CcmH- pyruvate a reduced c- nitrite a cis,cis-delta17,35- a cis-delta21-3- L-threo-3- a reduced β Skp (S)-2-aceto-2- dehydrogenase: yl)-L-glutamate uxaB gudD D-ribulose acetamidomethylphosphonate) SAM -undecaprenyl lipid A (E. coli -undecaprenyl a malonyl-[acp] diphospho)-2-C-methyl-D-erythritol a 3'-half-tRNA molecule with a PII protein terminal-formyl- asp O-ureido-L- elongation factor EF-P]- diphospho)-2-C- pro-interleukin-1 thr lys an octanoyl-[acp] a protein 2'-deoxyadenosine (2,3,4,5) with incorrect 2+ 2+ AICAR-phosphate dehydrogenase: thrA dehydrogenase: fadJ 5-dehydro-4- [acyl-carrier protein] CcmG disulfide tetradecenoyl-CoA type cytochrome 3-hydroxyC54:2-[acp] oxo-C40:1-[acp] glutamate phenylserine peroxide thioredoxin Zn Zn shikimate shikimate ydiB hydroxybutanoate synthase: leuA transaminase: ydiB dehydrogenase: acetate glycolate and uxuB 5-phosphate diphosphate K-12 core type phosphate a 2',3'-cyclic UTP L-methionine homoserine N-(β-L-lysyl)-L-lysine 34 methyl-D-erythritol tetrakisphosphate RodZ (2S,4S)-4-hydroxy-2,3,4,5- 5-phosphate molecule with 3-oxoacyl-[ACP] 3-oxoacyl-[ACP] 4-(cytidine 5'- putative threonine lysine 2,3- enoyl-[acyl- periplasmic 3'-monophosphate disulfide bonds Cd 2+ FieF Cd 2+ L-homoserine ilvE thrA D-glucopyranose 6-phosphate 3-hydroxyacyl-CoA acetyl-CoA formate glyoxylate D-altronate deoxy-D-glucarate uridine EF-P-Lys34 kinase I: aroK (R)-2,3-dihydroxy-3- tetrahydrodipicolinate with D-GlcNAc) a 5'-OH end phosphate end reductase: fabG reductase: fabG diphospho) protease: aminomutase: 2+ 2+ shikimate shikimate shikimate imidazole dehydrogenase: fadB D-mannonate α dye- 2-C-methyl-D- 3-ketoacyl-CoA pyruvate- hydroxylase: deaminase: carrier- serine Fe Fe + (2S)-2- degradation I -dehydro- nucleosidase: alanylglutamate shikimate methylpentanoate:NADP glycerol 4-hydroxy- L-homoserine an [amino-group carbon- UDP- putative beta- erythritol 2,4- thiol:disulfide nitrite [protein-PII] peptide putative beta- putative beta- -2-C-methyl- ybbK ilvA epmB protein] endoprotease kinase I: aroK homoserine isopropylmalate L-homoserine phosphoenolpyruvate β-deoxy-D decolorizing undecaprenyl- thiolase: fadA flavodoxin argininosuccinate rihC epmC dipeptidase: pepD phenylserine kinase: aroL shikimate oxidoreductase shikimate phosphate tetrahydrodipicolinate carrier protein]- (S)-3-hydroxybutanoyl-CoA phosphate acetaldehyde glycolate D-altronate glucose:undecaprenyl- ketoacyl-ACP cyclodiphosphate oxidoreductase putative reductase: uridylyltransferase: deformylase: ketoacyl-ACP ketoacyl-ACP a [protein chain elongation D-erythritol [+ 2 isozymes] amino acid reductase: DegP: degP D-myo- a protein CpxP val + phosphorous peroxidase: oxidoreductase: synthetase: argG aldolase: ltaE [+ 2 isozymes] shikimate kinase: thrB NADP -dependent D-mannonate -glucarate Degradation/Utilization/Assimilation - Other pyrophosphate acetyl-CoA C- [+ 2 isozymes] 2+ 2+ kinase (isomerizing): ilvC (2S)-2- kinase C-terminal-γ- acetyltransferase: pta dehydrogenase dehydratase: phosphate glucose- synthase: Z4866 synthase: ispF CcmG: ccmG tRNA nirC glnD def reductase: Z4865 reductase: Z4865 factor EF-P]-N-(β-lysyl) kinase: ispE mature pro- exporter: yddG fabI inositol (2,4,5) with correct Fe ZupT Fe kinase: aroL synthase: homoserine O- reductase: dapB hydrogencarbonate phosphoenolpyruvate pyruvate kinase: pykA aldolase: lyase: phnJ yfeX pyrophosphatase: acyltransferase: ydbK 2-phospho-4-(cytidine 2-oxobutanoate a peptide shikimate 3-phosphate isopropylmalate homoserine O- homoserine glucose-6-phosphate enoyl-CoA (acetylating): mhpF uxaA dehydratase: a cis,cis-delta17,35- a cis-delta21-3- 34 interleukin-1β a (2E)-oct- I: aroK (R)-2,3-dihydroxy- I: aroK hisF hisH (L-ornithyl) synthetase: ppsA pyruvate kinase: pykF phosphate 1-phosphate [+ 2 isozymes] ligase: -5-hydroxy-L-lysine 5'-diphospho)-2-C- (R)-β-lysine 2'-deoxyadenosine trisphosphate disulfide bonds RbbA O-phospho- hydro-lyase (2- succinyltransferase: succinyltransferase: kinase: thrB dehydrogenase: zwf hydratase: fadJ uxuA garL lpxT fadI shikimate 3-methylpentanoate (S)-2,3,4,5-tetrahydrodipicolinate carbamoyl -L-glutamate acetyltransferase: eutD [+ 2 isozymes] glyoxylate acrylonitrile 5-phospho-α- transferase: wcaJ ybeU 3-oxo-C54:2-[acp] hydroxyC40:1-[acp] uracil an oxidized H O 2-enoyl-[acp] shikimate 3-phosphate 3-phosphoshikimate 1- L-homoserine shikimate metA glucose-6-phosphate 3-[(4-amino-6-chloro- CMP a CcmG protein a CcmH protein an N-terminal L- canavaninosuccinate D-ribofuranose glu ala benzaldehyde methyl-D-erythritol 2 isopropylmaleate- D-erythro-1- metA phosphate enoyl-CoA tartronate degradation I acetoacetate 5'-deoxyadenosine N-methylacetamide 2,2'-disulfonyl 2-C-methyl-D-erythritol- an oxidized c- nitric oxide a uridylylated formate gly thioredoxin 2+ 2+ kinase: 2,3-dihydroxy-3- kinase: isomerase: pgi pyruvate D-ribose 1,2- met phthalate lipid A-core 1- with an internal with reduced acetyl-CoA CO a reduced methionyl-[protein] Mn Mn LdtB carboxyvinyltransferase: threonine forming): leuC leuD AICAR O-succinyl-L- tetrahydrodipicolinate hydratase: fadB 1,3,5-triazin-2-yl) di-trans,octa-cis- 2,4-cyclodiphosphate 2 type cytochrome PII protein MntH (imidazol-4- cys synthetase: glyoxylate semialdehyde degradation azobenzene flavodoxin Fe 2+ Fe 2+ 3-phosphoshikimate 1- aroL methylvalerate aroL cys acetaldehyde cyclic phosphate diphosphate α-D-glucopyranosyl- UMP a long-chain 3-oxoacyl-[acp] disulfide bridge cysteine residues acetyl-CoA (5Z)-dodecenoyl-CoA aroA synthase: homoserine succinylase: dapD O-phospho-L-homoserine acetyl phosphate carboligase: acrylonitrile (to acetyl CoA) amino]benzenesulfonate undecaprenyl phosphate a 2'-phospho- carboxyvinyltransferase: hydro-lyase: ilvD yl)-glycerol carB carA 6-phospho D-glucono-1,5-lactone crotonyl-CoA tartronate diphosphoundecaprenol 5-enolpyruvoyl- thrC shikimate 3- 2-isopropylmaleate shikimate 3- O-succinyl-L-homoserine probable pyruvate gcl [ligated tRNA] aroA 3-phosphate carbamoyl ethanol 2-dehydro- semialdehyde acetoacetate DmsD shikimate 3-phosphate phosphate (3S)-3-methyl-2- phosphate imidazoleglycerol- N-succinyl-2-amino-6-ketopimelate threonine L-ornithine formate lyase activating acetate kinase: ackA O-succinylhomoserine(thiol) 6-phosphogluconolactonase: dehydrogenase: adhP tartronate 3-deoxy-D- reductase: garR 2+ 2+ 5-enolpyruvoyl- thr oxopentanoate (2S)-2- phosphate Fe FeoB Fe 3-phosphoshikimate 1- 3-phosphoshikimate 1- phosphate synthase: thrC enzyme 2: pflC acetate kinase: purT chorismate isopropylmalate -lyase: metB N-succinyldiaminopimelate pgl ethanol semialdehyde gluconate acrylamide α shikimate 3-phosphate isoleucine dehydratase: hisB O-succinylhomoserine(thiol) [+ 3 isozymes] D-glycerate -D-ribose-1- a nascent peptidoglycan 10 UDP-4-amino- (1S,2R)-1- 1-palmitoyl- a 2'- α 32 2-C-methyl-D- L-ascorbate a ribonucleoside synthase: carboxyvinyltransferase: hydro-lyase (2- carboxyvinyltransferase: aminotransferase: argD F6P tartronate an N - a [DNA]-3'- + a 5'-phospho- an exoaminopeptidase S-methyl-5'- L-cysteine a cis,cis-delta21,39- a cis-delta11-3- -D-mannose a uridine a dipetide with an N- RNase II poly-A + (2E,6E)-farnesyl a decanoyl-[acyl- O-phospho- threonine transaminase: 3-(imidazol-4- -lyase: metB ornithine acetate dehydrogenase: adhE ketodeoxygluconokinase: acetoacetyl-CoA methylphosphonate (meso-DAP containing) β 1-cis-vaccenoyl-sn- a palmitoleoyl-[acp] NAD 3-chloro-D-alanine thiosulfate O-acetyl-L-serine sn-glycerol a palmitoyl-[acp] cys deoxyribonucleoside oxalate formyl-CoA GDP erythritol-2,4- FAD NADH H L-homoserine 2',3'-cyclic chorismate aroA aroA thr D-gluconate 6-phosphate putative SAM formyltetrahydrofolate 4-deoxy- -L- hydroxyl [DNA] thioglycolate ser C-(indol-3- thioadenosine [DNA] 3-hydroxyC58:2-[acp] oxo-C30:1-[acp] 1-phosphate in tRNA terminal L-aspartate substrate mRNA diphosphate a dodecanoyl-[acp] 6-phosphate 2'-deoxyguanosine aroC isopropylmaleate- N-succinyldiaminopimelate butanoyl-CoA semialdehyde kdgK glycerate glycerol-3-phosphate substrate desulfurase cyclodiphosphate carrier protein] L-ascorbate- L-tyrosine deaminase: 5-enolpyruvoyl- ilvE 5-enolpyruvoyl- yl)-2-oxopropyl L-cystathionine carbamoyltransferase: synthetase/ 5-phosphate arabinopyranose yl)glycerol 3-phosphate 5'-triphosphate 3-oxoacyl-[ACP] 3-oxoacyl-[ACP] tRNA Um32 1-hydroxy-2- homoserine farnesyl enoyl-[acyl- enoyl-[acyl- 3'-monophosphate phosphate chloride ClcA chloride synthase: forming): leuC leuD aminotransferase: serC 6-phosphofructokinase: acetyl-CoA formate ethanol reductase: glxR 2-kinase: chorismate ilvA shikimate 3- shikimate 3- phosphate argI phosphogluconate fructose-1,6- endolytic murein 3-phosphate reductase: fabG reductase: fabG methyltransferase: methyl-2-(E racemase: ygeA diphosphate carrier- 6-phosphate AsmA aroC L-cystathionine pfkA garK amidase: yjfC DNA formyl-CoA mannose-1-P FAD carrier- [+ 2 isozymes] phosphate ile (2R,3S)-3- histidinol-phosphate cystathionine dehydratase: edd bisphosphatase: fbp tartronate KDGP UDP-4-amino-4- S-sulfo-L- 5'-methylthioadenosine dipeptidase: exoribonuclease lactonase: gln phosphate N-succinyl-L,L-2,6-diaminopimelate 6-phosphofructokinase: putative carbon- transglycosylase: acyl-[acp]:1-acyl- 3-chloro-D-alanine acyl-[acp]:1-acyl- cysteine DNA transferase: putative beta- putative beta- trmJ )-butenyl 4- reductase: amino acid phosphatase: protein] protein] chorismate isopropylmalate aminotransferase: β [+ 3 isozymes] semialdehyde glycerate deoxy-L-arabinose repair metalloaminopeptidase: cysteine tryptophan nucleosidase: mtn guanosyltransferase: a 2'-O- pepE II: rnb ulaG (2Z)-2-aminobut- chorismate chorismate -lyase: metC cystathionine pfkB acetaldehyde phosphate synthetase/ phosphorous mltG sn-glycerol-3- dehydrochlorinase: sn-glycerol-3- desulfurase: polymerase: frc ketoacyl-ACP ketoacyl-ACP diphosphate fre exporter: yddG bacA reductase: reductase: 3-dehydro- chorismate chorismate L-citrulline reductase: garR 2-kinase: acetyl-CoA protein: ypdE synthase: synthase: manC 32 (2E,6E)-farnesyl a ribonucleoside chloride ClcB chloride 2-enoate synthase: 3-isopropylmalate synthase: hisC cystathionine succinyl- β KDGP butanoyl phosphate dehydrogenase acetyltransferase: pta formyltransferase: phosphate 2-O- dcyD phosphate 2-O- iscS dinB reductase: Z4865 reductase: Z4865 methyluridine synthase: ispG fabI fabI mutase: tyrA lyase: ubiC -lyase: metC 2-keto-3- amidase: ygiC lyase: phnJ radC trpB trpA (E)-4-hydroxy-3- D-homoserine L-gulonate 3'-phosphate tyr aroC dehydrogenase: β diaminopimelate β (acetylating): mhpF pyruvate decarboxylation to acetyl CoA I glxK arnA cysM a cis,cis-delta21,39- a cis-delta11-3- in tRNA phosphate a (2E)-dodec- a (2E)-dec- chorismate aroC L-histidinol -lyase: malY cystathionine -D-fructose 1,6-bisphosphate phosphate D-glycerate deoxygluconate a mature peptidoglycan a nascent peptidoglycan acyltransferase: plsC acyltransferase: RNase II methylbut-2-en- 6-phosphate 2'-deoxyguanosine chorismate [+ 2 isozymes] leuB desuccinylase: dapE argininosuccinate 2-phospho- acrylate [+ 2 isozymes] 3-oxo-C58:2-[acp] hydroxyC30:1-[acp] GDP-α-D- a proteinogenic 2-enoyl-[acp] 2-enoyl-[acp] lyase: ubiC phosphate β DHAP [+ 2 isozymes] acetyltransferase: eutD superpathway of acetate 5-phospho-α- with (L-alanyl-γ-D-glutamyl- (meso-DAP containing) plsC MTR an S-sulfanyl- formate oxalyl-CoA asp AMP substrate with 1-yl diphosphate FADH NAD + chorismate -lyase: malY a [pyruvate 6-phosphate a proteinogenic D-glyceraldehyde 2 PspB mutase: pheA chorismate synthetase: argG 2-keto-3- D-glycerate 5'-deoxyadenosine UDP-4-deoxy-4- S-carboxymethyl- adenine [DNA] mannose amino acid 2+ 2+ superpathway of L-homoserine 3-isopropylmalate L-homocysteine putative glycerate utilization and formation methane D-ribose 1,2- met meso-2,6-diaminopimeloyl- with GlcNAc terminus a peptide acetate ala [L-cysteine no poly-A tail Co CorA Co [+ 2 isozymes] histidinol- deoxygluconate dehydrogenase aldolase: eda a tetrahydrofolate formamido-β-L- 1-cis-vaccenoyl-2-palmitoleoyl- amino acid S-sulfo-L-cysteine 3-phosphate trp anthranilate 2-iminobutanoate and L-methionine biosynthesis dehydrogenase L,L-diaminopimelate L-arginino- aldolase: Z5687 2-kinase: cyclic phosphate D-cysteine chorismate chorismate phosphatase: L-homocysteine acetaldehyde E2 protein] N 6 pyruvate D-alanine) tetrapeptide AMP [DNA] NMN dipalmitoyl desulfurase] cobalamin- 6-phosphate triose-phosphate acetyl phosphate garK acetate arabinopyranose sn-glycerol-3-phosphate prephenate mutase: tyrA (decarboxylating) mutase: tyrA hisB succinate [+ 3 isozymes] butanoate -lipoyl-L-lysine D-glyceraldehyde acetyl-CoA anthranilate anthranilate methionine independent diaminopimelate aldolase: eda isomerase: tpiA pyruvate:[dihydrolipoyllysine- pyruvate phosphatidate chorismate asp : dmlA cobalamin- argininosuccinate ethanol lipoate glycerate 3-phosphate synthetase Ni 2+ Ni 2+ synthase chorismate synthase: homocysteine epimerase: dapF acetate kinase: ackA residue acetyltransferase]- acetate RcnA mutase: pheA (2S)-2-isopropyl- histidinol independent methionine lyase: argH dehydrogenase: adhP acetyltransferase 2-kinase: (AMP- Co 2+ Co 2+ anthranilate prephenate prephenate component I mutase: pheA metH transmethylase: amino acid acetate kinase: purT lipoyllysine 2- kinase: ackA NrfE aspartate 3-oxosuccinate homocysteine synthase: metH D-glyceraldehyde 3-phosphate 6 glxK forming): acs a 7,8-dihydro- an N 10 - a 3-methyl-branched a pyrimidine base RNase III mRNA all-trans- a pyrimidine a single- (S)-3-hydroxy-(11Z) a [protein]-α- a phosphorylated D-ribulose 3-dehydro- L-alanyl-D- D-myo- synthase dehydratase: dehydrogenase: (EC 4.1.3.27) histidinol ethanol N -(dihydrolipoyl) oxidoreductase: aceE an L-methionyl- glutathione methyl red a peptide with a a cis,cis-delta17,29- a cis-delta15-3- a cis-delta13-3- N 4 -acetylcytidine acetaldehyde pyruvate H O geranyl β-D-ribopyranose 2-oxobutanoate prephenate prephenate metE exporter: yddG acetate 8-oxoguanine MoO - processing S-sulfo-L-cysteine 1,4-dihydroxy- octaprenyl ribonucleotide 2 2 L-gulonate inositol (2,4,5) kinase: transmethylase: metE dehydrogenase: adhE lysine:NAD+ 2-phospho- Met formyltetrahydrofolate 2,3,4-saturated fatty acid lesion in DNA 2 GTP stranded RNA -octadecenoyl-CoA L-glutamate isocitrate 5-phosphate a hexanoyl-[acp] a protein glutamate component I pheA tyrA : trpE_2 dehydrogenase: arg Chemoautotrophic glyceraldehyde- acetate kinase: purT [initiator tRNA ] molybdopterin leader sequence dGMP 3-hydroxyC48:2-[acp] oxo-C34:1-[acp] oxo-C32:1-[acp] diphosphate D-ribose metL methionine in DNA molybdopterin substrate 2-naphthoate diphosphate 3-hydroxyacyl-CoA 3-oxoacyl-[ACP] 3-oxoacyl-[ACP] 3-oxoacyl-[ACP] chemotaxis protein dehydrogenase D-ribulose 5- geranyl 6-phosphate L-Ala-D/ trisphosphate (EC 4.1.3.27) acetolactate prephenate meso-diaminopimelate methionine Energy Metabolism oxidoreductase: lpda [pyruvate a [pyruvate D-glycerate citrate degradation isocitrate 3-keto-L- enoyl-[acyl- ethidium TehA ethidium [+ 2 isozymes] prephenate hisD synthase: 3-phosphate ethanol acetyl phosphate acetyl-CoA cofactor dGMP 5'-phosphate dehydrogenase: phosphate 1- putative pyranase: L-Glu [+ 2 isozymes] pyrimidine- reductase: fabG reductase: fabG reductase: fabG methyltransferase: 4 dehydrogenase diphosphate carrier- : trpE_2 3-phenyl-2- 3-(4-hydroxyphenyl) synthase dehydrogenase: dehydratase: synthase: metH L-arginine biosynthesis I (via L-ornithine) dehydrogenase: gapA dehydrogenase dehydrogenase short chain acyl-CoA bifunctional FMN dependent phosphohydrolase: N -acetylcytidine acetoin hydrogen:oxygen gulonate-6- protease: yhjS fucU N-(5-phosphoribosyl) 4-methyl-2- metH an acetyl-holo DNA- 10-formyltetrahydrofolate:L- reduced 1,4-dihydroxy- 5'-nucleotide fadB cheR dehydrogenase: phosphatase: epimerase: [+ 2 isozymes] oxopropanoate pyruvate II, valine tyrA pheA histidinal hydrogen E2 protein] N 6 E2 protein] N 6 -S- synthetase: fadK DNA ribonuclease NADH- putative leader phosphorylase: putative beta- putative beta- putative beta- amidohydrolase: synthesis: phosphatase: oxidoreductase: phosphate protein] L-aspartyl- oxopentanoate diaminopimelate Fatty Acid and Lipid Biosynthesis glyceraldehyde- fMet bis(molybdenum umpG a [protein]-L- yajO [+ 6 isozymes] D-ribose ycjG GhoT -anthranilate met oxidation citrate [citrate lyase acyl- formamidopyrimidine methionyl-tRNA N- glutaredoxin 2-naphthoate peptidase: hopD nucleosidase: 3-hydroxyacyl-CoA ketoacyl-ACP ketoacyl-ACP ketoacyl-ACP aceK nudI reductase: D-myo- insensitive, 3-(4- -dihydrolipoyl- acetyldihydrolipoyl- glycosylase: III: rnc azoreductase: pnp 5 yqfB poxB hyaC hyaB hyaA 1-deoxy-D- decarboxylase: N-(5-phosphoribosyl) phenylalanine tyrosine 4-phosphate leucine 3-phenyl-2- histidinal decarboxylase: lysA 3-phosphate lipoate carrier protein] fatty acyl-CoA cofactor) 1: grxA ppnN deoxyribonucleoside glutamate-O an isocitrate geranyl pyranase: L-alanyl-L- K + ChaA K + phosphoribosylanthranilate met I (aerobic) conversion of succinate to propanoate glycosylase: mutM formyltransferase: fmt nth octaprenyltransferase: azoR leader dehydrogenase: reductase: Z4865 reductase: Z4865 reductase: Z4865 xylulose 5- ulaD fabI a peptide inositol (2,5) -anthranilate transaminase: aminotransferase: small hydroxyphenyl) oxopropanoate dehydrogenase: glu dehydrogenase: L-lysine L-lysine synthetase: fadD synthase: mobA 5'-monophosphate -methyl-ester monophosphate rbsD glutamate isomerase: trpC transaminase: palmitate biosynthesis (type II fatty acid synthase) acetyltransferase: menA fadJ a cis,cis-delta17,29- a cis-delta15-3- a cis-delta13-3- dehydrogenase L-xylulose a (2E)-hex- bisphosphate aspC aspC subunit: ilvM pyruvate aspartate- palmitoleate (5Z)-dodecenoate cis-vaccenate phosphatidate biosynthesis (yeast) H phosphate peptidase: lepB phosphate hisD lys 2 gapC citrate-ACP RNase III phosphatase: yfbR a single- 3-oxo-(11Z)- cytidine 5-phosphate phosphoribosylanthranilate tyrosine semialdehyde ilvE phenylalanine aceF pyruvate fermentation a [DNA]- an N-formyl- a nucleoside 3-oxo-C48:2-[acp] hydroxyC34:1-[acp] hydroxyC32:1-[acp] acetate acetoin H O 2-enoyl-[acp] β-D-ribofuranose 1-(2- putative biosynthesis I (from succinyl-CoA acetyltransferase: pta a 5'-phospho- 7,8-dihydro- α β a pyrimidine base D-ribose 5- 2 [+ 2 isozymes] tyrosine [+ 3 isozymes] transaminase: biosynthesis I biosynthesis hydrogenase transferase: 4-oxo-2-pentenal a tetrahydrofolate a 3-methyl-branched 2,3,4- a 5'-phospho- a [DNA]-3'- , - a modified bis(guanylyl an mRNA fragment processing GSSG sulfite N,N-dimethyl-1,4- 2'-deoxyguanosine diphosphate stranded RNA octadecenoyl-CoA isomerase: trpC aminotransferase: dehydrogenase: leucine methylmalonyl- to acetate and lactate II nucleotide- L-methionyl- cys anthranilate phosphate dequalinium dequalinium aminotransferase: carboxyphenylamino) (S)-2-aceto-2- his tagatose-6- an acetoacetyl-[acp] (5Z)-dodec-5-enoate) 4 subunit: hyfG 13-DPG citE citD citF phosphate [DNA] 8-oxoguanine AMP diphosphate unsaturated aminotransferase: aspC DHAP CoA D-gluconate met saturated fatty acyl-CoA [DNA] nucleobase molybdopterin) product mRNA demethylmenaquinol-8 phenylenediamine ethidium 1-(2- -1-deoxy-D-ribulose aspC asd phosphate a (3R)-3- propionyl- 3'-phosphate [initiator tRNA ] a leader sequence a peptide ethidium MdfA AcrZ phe tyrB hydroxybutanoate [+ 2 isozymes] a (5Z)-dodec- a palmitoleoyl-[acp] A(H2) acetyltransferase: aldehyde cofactor carboxyphenylamino) 5-phosphate tyrB aldose/ hydroxydecanoyl-[acp] CoA:succinate mutase: scpA acetyl-CoA pyruvate degradation a drug a drug tyrosine L-aspartate 4- acetoacetyl-[acp] 5-enoyl-[acp] (3R)-3- 3-oxo-cis- phosphoglycerate a citryl-holo eutD (R)-2,3-dihydroxy-3- β CoA phosphate K + K + -1-deoxy-D-ribulose indole-3- aminotransferase: semialdehyde -alanine ketose reductase: fabG putative beta- glycerol-3- acetyl-CoA [citrate lyase acyl- tyr methylpentanoate:NADP + phe hydroxydecanoyl- vaccenoyl- kinase: pgk acetyltransferase: pta D-gluconate 5-phosphate glycerol leu biosynthesis III isomerase: ketoacyl-ACP transferase: tyrB putative beta- [acyl-carrier [acp] phosphate carrier protein] a ring-opened 7- UDP-N-acetyl-α-D-muramoyl- RNase E mRNA an apo-[c-type MoO - an α- iron(III)-[N-(2,3- N-acetyl-β- an [RNA]-3'- a [protein]- a protein-L- oxidoreductase homoserine scpC phosphate D-gluconate a 2-methyl branched 2 (2E,6E)-farnesyl a 6,7- (11Z,14Z,17Z)-3- a siderophore- d-biotin d + + indole-3- phosphate agaS ketoacyl-ACP synthase: dehydrogenase: 1-oleoyl-2- 3-phospho-D-glycerate (R)-methylmalonyl- (S)-lactate citryl-ACP a single stranded DNA 2-oxoglutarate 1-methyl-dAMP a heme(III)-bound a D-aminoacyl- hydroxylamine a cis,cis-delta13,25- a cis-delta17-3- (S)-ureidoglycolate K Kch K (isomerizing): ilvC dehydrogenase: superpathway of L-asparagine biosynthesis protein] synthase: fabF propanoyl-CoA kinase: gntK methylguanine L-alanyl-γ-D-glutamyl- processing cytochrome]-- molybdopterin deoxyadenosine thr dihydroxybenzoyl) protoheme a protein dihydropteridine neuraminate bound Fe(III) ribonucleoside- L-tyrosine 3'-GMP a palmitoyl-[acp] a protein methionine- -sulfoxide D-serine glycerol synthase: trpC tyr Z4866 an (11Z)-3-oxooctadec- lyso-glycerone CoA acetyltransferase: eutD D-alanyl-D-alanine 2,3,4-saturated fatty acid CcmE protein [tRNA] ATP diphosphate 3-hydroxyC44:2-[acp] oxo-C36:1-[acp] oxoicosatrienoyl-CoA asp N-acetylglutamate reductase: Z4865 dehydratase: fabZ gpsA Hydrogen lyase: citE D-gluconate in DNA meso-2,6-diaminopimelate substrate CcmH disulfide cofactor CTP in DNA -L-serine] complex dihydropteridine putative beta- 3'-phosphate phosphate (S)-S-oxide biotin FetB phosphate (R)-2,3-dihydroxy- metL 11-enoyl-[acp] acetyl phosphate 3-oxoacyl-[ACP] 3-oxoacyl-[ACP] RNA 3'- protein-tyrosine enoyl-[acyl- protein- D-serine synthase: argA [+ 2 isozymes] phosphate phosphoglyceromutase citD citF 6-phosphate ATP-dependent zinc serine (1S,2R)-1-C-(indol-3- a (3R)-3- a (7Z)-3-oxotetradec- 3-hydroxydecanoyl- Production reductase: fabG reductase: fabG reductase: nfsB N-acetyl-β- ketoacyl-ACP terminal 3'-nucleotidase: sulfoxide ammonia- synthase: trpC 3-methylpentanoate homoserine 2: gpmB phosphoglycerate Inorganic Nutrient Metabolism short chain acyl-CoA exodeoxyribonuclease 1-methyl-dAMP metalloendoprotease: ferric-chelate phosphatase: carrier- endoprotease: methionine- L-isoleucine biosynthesis III yl)glycerol 3-phosphate asp 7-enoyl-[acp] 3-oxo-cis- sn-glycerol heme O hydroxylamine dihydropteridine ureidoglycolate reductase: umpG reductase: K + Kup K + 2,3-dihydroxy-3- dehydrogenase: ammonia assimilation cycle III N-acetyl-L- hydroxybutanoyl-[acp] [acp] mutase: gpmA acetate kinase: ackA oxaloacetate formamidopyrimidine D-alanyl-D-alanine- demethylase: ribonuclease: molybdenum cofactor endonuclease D-aminoacyl- ferric-chelate putative beta- putative beta- neuraminate reductase: phosphate wzb protein] S-oxide lyase: (1S,2R)-1-C-(indol-3- β vaccenoyl- 3-phosphate hydrogen 2,3-bisphosphoglycerate- synthetase: fadK VII: xseA xseB holocytochrome threonylcarbamoyl- synthase: reductase: hcp hflK hflC ftsH reductase: hmp lyase: allA Z4865 degS bisC methylvalerate thrA -alanine glutamate putative beta- dehydrase: fabA cytidylyltransferase: tRNA reductase: ketoacyl-ACP ketoacyl-ACP lyase: nanA (3R,11Z,14Z,17Z)-3- nfeF an [RNA]-3'-cyclase: rtcA [+ 3 isozymes] reductase: reductase: dsdA yl)glycerol 3-phosphate (3R)-3- [acp] production V independent acetate kinase: purT superpathway of sulfate assimilation and cysteine biosynthesis DNA glycosylase: mutM adding enzyme: murF fatty acyl-CoA ssDNA-specific alkB rne c synthase: ccmF IV: nfo AMP synthase: tsaC cyoE a 5,6,7,8- indoleglycerol ketoacyl-ACP a (2E)-dec-2-enoyl-[acp] methylmalonyl- nitrate taurine degradation IV mocA deacylase: nfeF reductase: Z4865 reductase: Z4865 a peptide hydroxyicosatrienoyl- ribonucleoside-2',3'- a [protein]- fabI a peptide msrA biotin glu hydro-lyase: ilvD ammonium L-aspartate:L- thiosulfate synthetase: fadD exonuclease: recJ tetrahydropteridine guanosine pyruvate indoleglycerol phosphate L-aspartate:ammonia acetylglutamate hydroxybutanoyl- reductase: acyl-CoA:sn phosphoglycerate CoA a cis,cis-delta13,25- a cis-delta17-3- L-tyrosine a (2E)-hexadec- a [protein]-L- L-homoserine reductase: acetate reduction IV disproportionation dtd N-acetyl-β-D- CoA cyclophosphate + + MrdB putative (3S)-3-methyl-2- ligase (AMP- glutamine amido- [acyl-carrier fabG formate mutase: gpmM α K TrkH K phosphate aldolase: trpA kinase: argB trans-2- -glycerol-3- decarboxylase: 3-phospho-D-glycerate a [DNA]- 2,6-diamino-4- UDP-N-acetyl-α-D-muramoyl-L- RNase E a CcmE-[c-type a 5'- - A ammonium H O 3-oxo-C44:2-[acp] hydroxyC36:1-[acp] pyruvate glyoxylate urea 2+ 2-enoyl-[acp] methionine glutamate mutase oxopentanoate L-glutamate:NADP+ glu Z4865 (dissimilatory) IV (rhodanese) taurine a 5'-phospho- formaldehyde succinate cytidylyl a [DNA]-3'- (L-threonylcarbamoyl) N-(2,3- 2 mannosamine Fe a siderophore aldolase: trpA forming): asnB ligase (AMP- protein] scpB nucleotide- hydroxy-5-(N-methyl) 4-oxo-2-pentenal γ an mRNA fragment processing deoxyadenosine-5- 2+ ferroheme o ser homoserine O- 7 decenoyl-ACP putative beta- phosphate 1-O- α [DNA] alanyl- -D-glutamyl-meso-2,6- a 2-methyl branched 2,3,4- a ribonucleoside a single-stranded dAMP cytochrome--CcmH molybdenum hydroxyl adenylate Fe dihydroxybenzoyl) YaiW subumit: Z0895 isoleucine oxidoreductase forming): asnB N-acetylglutamyl- dehydratase: fabZ 3-oxo-cis-∆ - 2-phospho-D-glycerate nitrate -ketoglutarate- AMP EcnB succinyltransferase: glutamine asparagine isomerase: fabA ketoacyl-ACP acyltransferase: D-3-phosphoglycerate thiosulfate 3'-phosphate formamidopyrimidine diaminopimeloyl-D-alanyl-D-alanine saturated fatty acyl-CoA diphosphate oligodeoxyribonucleotide product mRNA disulfide] complex phosphate-[DNA] an uncharged indole ser indole 2-oxoglutarate(deaminating) phosphate tetradecenoyl- dependent taurine 5'-monophosphate cofactor (dioxo) a D-amino acid -L-serine amino acid transaminase: synthetase: asnA 3-hydroxyacyl- a reduced Macromolecule Modification dehydrogenase: serA nitrate tRNA + + metA : gltD gltB synthetase: reductase: plsB dioxygenase: tauD K KefB K exporter: yddG ilvE [acp] hydrogenase enolase: eno sulfate reductase glnA N-acetylglutamylphosphate [acp] a (3Z)-dec-3-enoyl-[acp] Z4865 putative thiosulfate 2-aminoacetaldehyde (2S, 3S)-3-methylaspartate O-succinyl-L- glutamate asn reductase: fabG 3-phosphooxypyruvate (cytochrome) RseC tryptophan tryptophan cys reductase: argC dehydratase: fabA a (3R,11Z)-3- 1-oleoyl-sn tRNA processing sulfurtransferase: ile homoserine dehydrogenase: asn a (3R,7Z)-3- putative 3- sulfate : napA napB synthase: trpB synthase: trpB N-acetyl-L- hydroxyoctadec- -glycerol 3- a [bis(guanylyl molybdopterin) a [TusA sulfur- galactosyl-(glucosyl) two reduced an N 3 -methyladenine a [ThiI sulfur- 6-deoxy-6-sulfo-D- a (1->4)- uridine 2552 an oxidized D-sedoheptulose 3-hydroxy-2,4- 5-dehydro- a protein-L- guanosine hydroxytetradec- phosphoenolpyruvate adenylyltransferase: sseA [bis-MGD cofactor UDP-α-D-glucose a heme(III)-bound H O an [oxidized pimeloyl-CoA maltopentaose a cis,cis-delta13,31-3- a cis,cis-delta11,23- maltose D-alanyl-D-alanine 2+ + + gdhA a (2E)-but-2-enoyl-[acp] oxoacyl-[ACP] 3-phosphoserine nitrite a [TusD]-L-cysteine H O diphosphate 2 α nitroaromatic dioxopentyl methionine- Fe K KefC K CsgE glutamate 5- 11-enoyl-[acp] phosphate cofactor chaperone]- carrier protein]-S- -(heptosyl) -Kdo - a CcmAB complex 2 cysteine residues in DNA ala carrier protein]- cys fructose 1-phosphate -D-glucan in 23S rRNA a malonyl-[acp] 1,7-bisphosphate mutated tRNA 4-deoxy-D- a protein 2',3'-cyclic MipA 7-enoyl-[acp] a polycistronic superpathway of N-acetylglucosamine, Amine and Polyamine Degradation cysD cysN aminotransferase: serC [+ 2 isozymes] chaperone]-bis-MGD 2 3 2 CcmCDE complex GTP DsbA protein] dITP hydroxy C50:2-[acp] 3-hydroxyC42:2-[acp] IMP L-proline biosynthesis O-succinylhomoserine(thiol) synthase: Z4863 3-hydroxy cis a reduced 4-aminobutanoate choline degradation I S-sulfanyl-L-cysteine sulfanyl-L-cysteine lipid A-bisphosphate in a protein L-cysteine 23S rRNA 2'-O maltose O- compound phosphate D-alanyl- glucuronate (R)-S-oxide non-heme monophosphate semialdehyde 3-hydroxy cis ∆ 7 acyl-CoA:1-acyl- phosphoenolpyruvate pyruvate kinase: pykA tRNA precursor N-acetylmannosamine and N- nitrite 3-oxoacyl-[ACP] 3-oxoacyl-[ACP] putative 3- 5-dehydro- protein- 5 deoxyinosine triphosphate inosine-5'-phosphate NAD(P)H Autoinducer- RNase BN D-alanine putative trp L-proline trp III (from L-ornithine) -lyase: metB crotonyl-[acyl- β-keto-cis-∆ - vaccenoyl- hydrogenase 3 degradation II reductase: fabG -ribose U2552 acetyltransferase: 4-deoxy-D- bacterial ammonium gln N-acetylornithine -tetradecenoyl- sn-glycerol-3- synthetase: ppsA pyruvate kinase: pykF acetylneuraminate degradation APS reductase: 3 methyl- maltodextrin 6-deoxy-6- reductase: fabG oxoacyl-[ACP] nitroreductase: sedoheptulose 2 degrading methionine- methyloxaloacetate biosynthesis I carrier-protein] dodecenoyl-[acp] [acp] O-phospho-L-serine thiocyanate sulfite TusA:TusD inorganic pyrophosphatase: rdgB methyltransferase: maa phosphohydrolase: ribonuclease: dipeptidase: protease: yhjS ferritin: SecA glutaminase: aminotransferase: [acp] phosphate 2-O- choline nirC lipopolysaccharide release of heme- GTPase: 8-amino-7- cysteine phosphorylase: putative beta- putative beta- synthase: bisphosphate protein: lsrG glucuronate S-oxide predicted (from L-glutamate) reductase: fabI hydrogenase ribonuclease: N-acetylneuraminate 4-aminobutanoate bis-MGD cofactor sulfurtransferase: pyrophosphatase: adenine DNA sulfofructose- nucleoside triphosphate 6-O-acetyl-α-D- yrfG nfsB rbn ddpX [+ 2 isozymes] ftnA L-ornithine glsB L-glutamate biosynthesis III argD synthase: fabB dehydratase: acyltransferase: pyruvate adenylyl-sulfate glucosyltransferase: bound CcmE: argK oxononanoate desulfurase: malP ketoacyl-ACP ketoacyl-ACP a 2'-O- rlmE Z4863 a hydroxylamino 3,4,4-trihydroxy-5- isomerase: reductase: ATP-driven L-cystathionine dehydratase: 4 subunit: hyfG rne N-acetylneuraminate 4-aminobutyrate chaperone: fdhD glycosylase: 1-phosphate pyrophosphohydrolase: [+ 3 isozymes] aldolase: fbaA a nucleoside 5'- [FeO(OH) fabZ kinase: cysC ammonium tusC tusB tusD ppa 2552 glucopyranosyl- + + Ag43 [+ 7 isozymes] [+ 2 isozymes] fabZ a (5Z)-3-oxododec- plsC phosphoserine waaJ ccmB ccmA [+ 7 isozymes] synthase: bioF iscS reductase: Z4865 reductase: Z4865 methyluridine [+ 2 isozymes] group-containing phosphooxypentan- D-ala 3-deoxy-D-kduI a peptide msrB 3'-GMP K transporter K NlpI glu a butanoyl-[acp] hydrogenase: lyase: nanA transaminase: tag aldolase: yihT mazG (1->4)-D-glucose monophosphate a [protein]-L- ] monomer 5-enoyl-[acp] 3-hydroxyacyl- bisoleoyl ribonuclease: N-acetyl-D- phosphatase: serB α-D- a cis,cis-delta13,31- a cis,cis-delta11,23- a (1->4)- in 23S rRNA a 3-oxotetradecanoyl- inosine compound 2-one glycero-2,5- complex cystathionine 2-oxoglutarate N-acetyl-L- hydrogencarbonate hycF hycD a tRNA precursor polynucleotide ethanolamine utilization gabT betaine aldehyde a [TusD sulfur- maltohexaose D-erythrose glutamate 5- superpathway of L-serine L-glutamate-5- a (2E,7Z)-tetradeca- rne mannosamine PAPS a [bis(guanylyl maltotetraose dIMP 3-oxo-C50:2-[acp] 3-oxo-C42:2-[acp] α-D-glucan [acp] methionine superpathway of L-aspartate 2-oxobutanoate β-lyase: metC L-glutamate:NADP+ ornithine β-ketoacyl-ACP [acp] phosphatidate with a 5' phosporylase: sulfo-bis(guanylyl a [TusA]-L-cysteine galactosyl-(glucosyl) UDP GDP + an intra- (8S)-8-amino-7- a [ThiI sulfur- glucopyranose DHAP hexodiulosonate of K+ kinase: proB and glycine biosynthesis I 2,7-dienoyl-[acp] putative beta- hycC hycG 4-aminobutyrate molybdopterin) cofactor carrier protein]-S- a heme(III)-bound H + phosphate H a [reduced an apurinic site coenzyme A 4-phosphate γ semialdehyde glu carbamoyl synthase: fabF dehydratase: extension and pnp N-acetylmannosamine betaine aldehyde ser molybdopterin) cofactor -(heptosyl) -Kdo - a CcmABCD complex phosphate protein disulfide 3-methyladenine ala carrier protein]- 1-phosphate 3-sulfolactaldehyde DHAP FtsK and L-asparagine biosynthesis -L-glutamyl cystathionine oxidoreductase ketoacyl-ACP hycB hycE phosphoadenosine dimethyl sulfanyl-L-cysteine 3 3 2 DsbA protein] oxononanoate acetylornithine phosphate ∆ 7 aminotransferase: chaperone]-L-cysteine CcmE protein within DNA 2+ Ni(2+) ABC 2+ acetolactate 5-phosphate β L-cysteine biosynthesis I (deaminating): gltD gltB [+ 4 isozymes] cis- - fabA a long 3' trailer [+ 2 isozymes] kinase: nanK ethanolamine dehydrogenase: phosphosulfate lipid A-bisphosphate S-sulfanyl- Ni Ni 3-phospho-D-glycerate -lyase: malY deacetylase: synthetase: reductase: Z4865 puuE sulfoxide transporter synthase II, tetradecenoyl- H N-acetyl-D- succinate betB reductase: cysH putative serine L-cysteine AcrZ glu glutamate-5- glutamate argE 3-oxo-cis-∆ 5 - a (2E,11Z)-octadeca- 2 a tRNA precursor ethanolamine ammonia- degradation LolB fumarate valine insensitive, D-3-phosphoglycerate L-homocysteine carB carA a 3-oxohexanoyl-[acp] [acp]:NAD+ mannosamine semialdehyde acetlyltransferase semialdehyde dehydrogenase: gdhA dodecenoyl-[acp] 2,11-dienoyl-[acp] with a 5' lyase: eutC eutB glycine betaine small subunit: ilvM dehydrogenase: serA (S)-1-pyrroline- ser carbamoyl oxidoreductase: 6-phosphate L-carnitine degradation I sulfite of prophage cyanate degradation dimethyl sulfoxide L-ornithine extension and a succinate a 1-long-chain di-trans,octa-cis α-D-Kdo-(2->4) 2/3-O-Ac-α-L- a [lipoyl-carrier 34 an apo-[c-type a [protein] adenosine dehydrogenase: 3-phosphooxypyruvate glu reductase: fabG cis-vaccen-2- a long-chain β an N-terminal N-monoacetylchitobiose Nα,Nε-diacetyl-lysyl- trimethylamine a cytidine 2-dehydro-3- sn-glycerol a nucleoside 3',5'- (2E,5Z)- 2-keto-D- glucose- 5-carboxylate L-selenocysteine biosynthesis I (bacteria) 3-oxoacyl-[ACP] fabI superpathway of fatty acid N-acetylmannosamine- CP-933T: Z2984 a [formate C acetyltransferase]-glycine GDP- -L-fucose an L-leucyl- L-carnitine a reduced fumarate a cis,cis-delta19,37-3- a cis,cis-delta9,21-3- 6 RNA an oligopeptide DHAP curcumin α aspartate aspartate [+ 3 isozymes] proA cobalamin- phosphate short 3' extension acetaldehyde semialdehyde a reduced flavodoxin SAM acyl-glycerone -undecaprenyl -α-D-Kdo-(2->6) Fuc-(1->3)-α- a tRNA precursor 6'-phosphate a tRNA precursor prenyl phosphate FMNH asp protein]-N -[(R) cytochrome] with (L-serine/L- a protein 2',3'-cyclic methyl - MreD putative serine enoyl-[acp] assimilatory fatty alcohol ATP L-lysyl-[protein] [tRNA Leu ] 2 D-alanyl-D-alanine N-oxide hydroxy-C56:2-[acp] hydroxyC40:2-[acp] in tRNA deoxy-D-gluconate 3-phosphate bisphosphate tetradecenoyl-CoA gluconate PtsH specific PTS (S)-2-aceto-2- pyrroline-5- methionine independent reductase: fabG a (7Z)-tetradec- a (3R,5Z)-3-hydroxydodec- biosynthesis initiation (E. coli) RNase BN 6-phosphate dehydrogenase serine diphosphate CTP TorC protein 3' -> 5' RNA 3-hydroxy-2,4- ∆ 3 ∆ 2 D-glucoside ammonia- transaminase: 3-phosphoserine reductase: fabI L-carnitine sulfite reductase CO carbonic 3-phosphate -lipid A (E. coli) D-Glc-PP-Und 3-oxoacyl-[ACP] 3-oxoacyl-[ACP] -dihydrolipoyl]- tRNA (cytidine- 2-keto-3-deoxy- acyl-CoA:sn a dislufide bridge 3',5'-nucleoside threonine) putative -cis- NADPH- 2-keto-D- monophosphate enzyme II L-glutamate-5- synthase: acetlyltransferase 5-enoyl-[acp] epimerase: nanE + 2 thiol:disulfide lyase: aspA aspC hydroxybutanoate carboxylate homocysteine ornithine putative beta- 7-enoyl-[acp] ribonuclease: (NADP ): gabD acetyltransferase: cysE dimethyl sulfide L-lysine protein N 6 - 2'-O)-ribose D-gluconate phosphate exonuclease: pentadione -trans- putative dependent gluconate aminotransferase: serC of prophage ser a tRNA sec RNase T N-acetyl-D- (NADPH): cysI cysJ anhydrase: cynT reductase: fabG reductase: fabG -glycerol-3- bisphosphate protein-serine/ protease: yhjS BhsA semialdehyde reductase: metH ketoacyl-ACP ∆ 5 acetyl-CoA rbn acetaldehyde ethanol monoacetylchitobiose- D-alanyl-D-alanine carnitine oxidoreductase: protease: yhjS Lpp (R)-2,3-dihydroxy-3- transmethylase: carbamoyltransferase: 3-hydroxy cis - a cis-vaccenoyl-[acp] probable pyruvate putative alkyl- Kdo -lipid A leucyl- flavin L-aspartate (dihydrolipoyl) methyltransferase: dehydrogenase: phosphate 1-O- phosphatase: tatD [+ 3 isozymes] 5-phosphate enoyl-CoA curcumin reductase: CP-933T: Z2984 selenide putative beta- exonuclease: glucosamine carnitine--CoA carbonic 2 fucosyltransferase: putative beta- putative beta- threonine + proC reductase: Z4865 dehydrogenase dehydrogenase: adhP succinate O-acetyl-L-serine CCA tRNA 6-phosphate endoribonuclease carboxypeptidase: monooxygenase: ccmG methylpentanoate:NADP metE argI dodecenoyl-[acp] RNase D hydrogen sulfide formate lyase activating dihydroxyacetonephosphate phosphotransferase: tRNA--protein prenyltransferase: oxidase: lysine:NAD+ trmL kduD acyltransferase: yciV [+ 2 isozymes] thiolase: lsrF isomerase: [+ 3 isozymes] reductase: ghrB mannose- O-phospho-L-serine serine ketoacyl-ACP rnt RNase 6-phosphate (acetylating): mhpF ligase: caiC anhydrase: can wcaE nucleotidyltransferase: cca hydrolase: chbF BN: rbn dacD yeaW yeaX ketoacyl-ACP ketoacyl-ACP a 2'-O- an apo-[c-type phosphatase: 3-hydroxy-2,4- asp oxidoreductase L-alanine methionine dehydratase: fabZ acetyl-CoA exonuclease: ethanol enzyme 2: pflC synthase: Z4084 transferase: aat ubiX nadB a [lipoyl-carrieroxidoreductase: lpd 3-deoxy-D-glycero- a nucleoside 5'- a nucleoside 5'- a peptide fadB curA PtsH specific PTS D-fructofuranose selenide, L-serine:tRNASec a (3R)-3- synthase: acetyl-CoA:ACP N-acetylglucosamine- lpxT reductase: Z4865 reductase: Z4865 methylcytidine 34 1-C16:0-α,ωplsB- cytochrome] pphB dioxopentyl (3E,5Z)- a peptide D-gluconate 3'-AMP MgrB (isomerizing): ilvC pro biosynthesis I acetyltransferase: carboxyltransferase: rnd RNase DPH: rph [+ 2 isozymes] dehydrogenase: adhE [+ 2 isozymes] protein]-N 6 -[(R 2,5-hexodiulosonate monophosphate monophosphate enzyme II synthase: water ligase (AMP- hydroxyhexanoyl-[acp] Z4866 a (2E,5Z)-dodeca- transacylase: fabH 6-phosphate O-acetylserine α-L-Fuc-(1->4) a cis,cis-delta19,37- a cis,cis-delta9,21- in tRNA dicarboxyl-2- with reduced L- [+ 2 isozymes] phosphate tetradeca-3,5- dihydrocurcumin L-aspartate:ammonia (S)-1-pyrroline- phosphoserine cysE asp L-citrulline accD accA Respiration respiration (anaerobic) exonuclease:polynucleotide carbamate hydrogencarbonate a [formate C acetyltransferase]- a 1-alkyl- a [protein] N-acetyl-D- L-malic )-lipoyl]-L-lysine (R)-2,3-dihydroxy- 3-methyl-2- metH dikinase: forming): serS [+ 2 isozymes] 3,5-dienoyl-[acp] deacetylase: nagA urea degradation II sulfhydrylase: cysM 5'-deoxyadenosine a long-chain α-D-Kdo-(2->4)-α- -2/3-O-Ac-α-L- GDP a tRNA D-glucosamine a single-stranded trimethylamine 2-iminosuccinate succinate 3-oxo-C56:2-[acp] 3-oxo-C40:2-[acp] lysophosphatidate cysteine residues a [protein] Ser/Thr dienoyl-CoA ligase (AMP- 5-carboxylate phosphatase: serB (3R)-3- rnd phosphorylase: a flavodoxin semiquinone met glycerone 3- di-trans,octa-cis- N-terminal L- a tRNA Leu glucosamine prenylated FMNH an oxidized trimethylamine glycin -2-yl radical 2 semialdehyde QseG 3-methylpentanoate selD 5 cis-vaccenate acetyl-CoA ethanol fatty acid α containing a mature tRNA Nα,Nε-diacetyl- OmpL forming): asnB oxobutanoatevaline O-acetyl-L-serine hydroxyhexanoyl- cis-∆ -dodecenoyl- pnp a tRNA precursor D-glucosamine (R)-carnitinyl-CoA O-acetylserine D-Kdo-(2->6)-lipid Fuc-(1->3)- - 6-phosphate oligoribonucleotide TorC protein mannose- pyrroline-5- met hydrogen sulfide a (9Z)-3-oxohexadec- an acetyl-[acp] crotonobetainyl- cyanase: cynS phosphate undecaprenyl phosphate 3' CCA end leucyl-L-lysine lysyl-D-alanine D-ala N-acetyl-D- 2,3-dihydroxy-3- an L-seryl- argininosuccinate [acyl-carrier [acp]:NAD+ malonyl-CoA 2-phospho-D-glycerate with a short 6-phosphate urea sulfhydrylase: cysK A 1-diphosphate D-Glc-PP-Und PtsH specific PTS asparagine carboxylate ser transaminase: selenophosphate 9-enoyl-[acp] phosphate γ-butyrobetainyl- CoA mannosamine methylvalerate ilvE [tRNA sec ] synthetase: argG protein] oxidoreductase: 3' extension UreD-UreF-UreG- enzyme II synthetase: asnA reductase: 9 a tRNA acetyltransferase: pta CoA:carnitine hydratase: caiD CheZ O-acetylserine 3-oxo-cis-∆ - [acyl-carrier-protein] S- hydro-lyase: ilvD proC dehydratase: fabZ fabI enolase: eno precursor with apourease_2: 5,10-methylenetetrahydrofolate:glycine val hexadecenoyl- phosphate CoA CO a 5'-deoxyribose- N 2 -succinyl- sulfhydrylase: cysM L-arginino- malonyltransferase: fabD RNase T ureA_2 ureB_2 cys 2 an N-terminal a precursor of trimethylamine 2-dehydro-3-deoxy- cytidine (S)-2- a UDP-sugar di-trans,octa-cis D-myo- asn (3S)-3-methyl-2- hydroxymethyltransferase: glyA selenocysteine 3-hydroxyacyl- a 5' extension α-D-glucosamine transferase: cyanate dethiobiotin a sulfurated an L-phenylalanyl- glutathione 2-hydroxyethyldisulfide [DNA] H O ATP O-succinyl-L- ATP H O a ribonucleoside a single γ-butyrobetaine a reduced a cis,cis-delta15,33-3- a (9Z)-3-oxooctacos- a ribonucleoside long chain octanoate an aromatic a nucleoside 5'- N,N'- [acp] exonuclease: acetyltransferase: eutD SAM 5-phosphate- 2 2 large subunit of L-rhamnonate L-glutamate 5- 3'-AMP -undecaprenyl D-cysteine inositol (2,5) O-acetylserine succinate a (5Z)-dodec-5-enoyl-[acp] arginyl-[protein] Phe hydroxyglutarate cys met β-D- NfrA LpoA oxopentanoate pro valine--pyruvate synthase: selA [acp] phosphoenolpyruvate RNase 6-phosphate caiB ureC_2 ureD_2 [sulfur carrier] [tRNA ] homoserine triphosphate stranded DNA TorY protein N-oxide hydroxy C52:2-[acp] 9-enoyl-[acp] 5'-monophosphate polyphosphate amino acid monophosphate PtsH diacetylchitobiose- sulfhydrylase: cysK reductase: fabG rnt γ-butyrobetainyl- crotonobetainyl- [DNA] hydrogenase 3 3-oxoacyl-[ACP] 3-oxoacyl-[ACP] semialdehyde 2-oxoglutarate adenosine 3'- diphosphate octanoul-ACP bisphosphate cellobiose isoleucine aminotransferase: argininosuccinate dehydratase: fabA a malonyl-[acp] PH: rph acetyl phosphate ureF_2 ureG_2 succinylglutamate UMP undecaprenyl D-cysteine aromatic- L-cysteine methionine L-asparaginase: gly glucosamine- CoA CoA cytidine reductase ((S)-2- polyphosphate specific PTS enzyme II an L- putative beta- RNase D γ-butyrobetaine 2-keto-3-deoxy- reductase: fabG reductase: fabG semialdehyde phosphate phosphatase: pyrophosphate synthetase: desulfhydrase, amino-acid desulfhydrase: sulfoxide ansA transaminase: ilvE avtA lyase: argH UreD-UreF-UreG- biotin phenylalanyl- 2-hydroxyethyldisulfide exodeoxyribonuclease ATPase: ychF ATP DNA nucleosidase: rihC DmsA selenocysteinyl- ketoacyl-ACP pyruvate kinase: pykA phosphoenolpyruvate exonuclease: 6-phosphate DNA-5'-terminal hydrogenase L-rhamnonate putative beta- putative beta- hydroxyglutarate- phosphohydrolase: umpH kinase: ppk aas reductase: a (2E)-hex-2-enoyl-[acp] acetate kinase: ackA apourease: reductase: yfcG I: sbcB RadD O-succinylhomoserine pyrophosphatase: monooxygenase: dehydrogenase: phosphatase: PLP-dependent: transaminase: cysK β cys sec deaminase: synthase: tRNA--protein primase: [+ 2 isozymes] forming): serA umpG -D- ala [tRNA ] reductase: putative 3-oxoacyl-acetoacetyl-[acp] pyruvate kinase: pykF carboxylase: ppc rnd deoxyribophosphodiesterase: ycaO 3 maturation yeaW yeaX aldolase: yfaU ketoacyl-ACP ketoacyl-ACP astD [+ 2 isozymes] bacA dcyD tyrB msrB PtsH AscF ile arg acetate kinase: purT ureC ureB ureA Carbohydrate Degradation 2-hydroxyethyldisulfide [+ 3 isozymes] ATPase: radD lyase: metB 2 long chain [+ 5 isozymes] asp Z4865 [ACP] synthase: Z4863synthase: fabF nagB bioB transferase: aat mutM dnaG protease: hycI N - 2-oxoglutarate an octanoyl-[acp] an aromatic L-methionine- a nucleoside cellobiose hexanoyl-[acyl- crotonobetainyl- ureD ureF ureG reductase: Z4865 reductase: Z4865 α a ribonucleoside di-trans,octa-cis[+ 2 isozymes] pyruvate pyruvate Ins(2)P YddB SlyB a (3R,9Z)-3- reductase: yghU a cis,cis-delta15,33- a cis-delta9-3- succinylglutamate an -D-aldose UMP adenosine polyphosphate 2-oxo-acid (R)-S-oxide carrier-protein] [+ 3 isozymes] [+ 3 isozymes] oxaloacetate acetate CoA ammonium D-ribofuranose -undecaprenyl hydroxyhexadec- pyruvate F6P a 2'- succinate 1-phosphate reductase: fabI reductase: caiA superpathway of glucose and xylose degradation an unsulfurated L-phenylalanyl-L- 4-hydroxy- + + a C terminal (S)-lactaldehyde pyruvate 3-oxo-C52:2-[acp] hydroxyC28:1-[acp] D-galactosamine and N- L-rhamnose degradation I glucose and glucose-1-phosphate degradation biotin 5'-deoxyadenosine Phe [DNA] ADP H AMP H ssDNA/pppN(pN) trimethylamine phosphate indole Mtr indole 9-enoyl-[acp] met a tRNA a 5'-phospho- deoxyribonucleoside phosphate 2-oxobutanoate succinate diphosphate a large subunit an oxidized trimethylamine Zn 2+ ZntB Zn 2+ malate queuosine [sulfur carrier] arginyl-[protein] 2-sulfanylethan- 2-pentenal- hybrid 32 amino- semialdehyde ∆ 9 D-glucopyranose acetyl-D-galactosamine GSSG [DNA] 5'-monophosphate n -1 TorY protein a hexanoyl-[acp] 3-hydroxy cis an acetoacetyl-[acp] pyruvate probable pyruvate dehydrogenase: mdh biosynthesis I (de novo) α-D- 1-ol 5-phosphate acid peptide of hydrogenase 3 an uncharged 6-phosphate degradation α-L-rhamnopyranose -hexadecenoyl- dehydrogenase: formate lyase [+ 23 isozymes] N-acetyl-D- glucopyranose β [acp] tRNA + YgiB Nucleoside and Nucleotide Biosynthesis -ketoacyl-ACP aceF aceE lpd activating preQ NADP -dependent 2+ 2+ NlpE biotin-carboxyl carrier 0 galactosamine L-rhamnose 1-phosphate Zn ZitB Zn dehydratase: (S)-malate 37 an N 1 - a Chi-site containing a RecA DNA a 6-sulfo-α- a peptide with a PepB 46 an oxidized a HypE hydrogenase LapB synthase: fabF enzyme 2: pflC 7-cyano-7- glucose-6- a purine base an adenine (L-threonylcarbamoyl) an N-terminal + (2R,3S)-3- a guanine (R)-2- D-glyceraldehyde a negatively poly-[(R)-3- protein assembly 6-phosphate mutarotase: an L-leucyl- glycerophosphoserine NADPH NAD maltohexaose a 9S rRNA H NAD + a cis,cis-delta11,29-3- a cis,cis-delta7,25-3- wound RNA thiamine a dipeptide glyoxal fabZ 2-oxoglutarate methyladenine double stranded recombination D-quinovosyl an N-terminal aminopeptidase 2 hybrid- maturation protein- ethylphosphate a protein [+ 4 isozymes] deazaguanine α lesion in DNA in tRNA adenylate arginyl-[protein] Leu isopropylmalate in tRNA hydroxyglutarate 3-phosphate supercoiled DNA hydroxybutanoate] superpathway of purine nucleotides de novo biosynthesis II acetyl-CoA [+ 3 isozymes] phosphate putative N- rhaM -D-glucose- [tRNA ] hydroxy C48:2-[acp] hydroxyC44:2-[acp] diphosphate GTP superpathway of pyrimidine de novo biosynthesis (E. coli) CMP a [biotin carboxyl- fumarase C: fumC in RNA DNA with a blunt end and repair protein diacylglycerol Xaa-L-proline substrate (2S)-2- 7 2-oxoglutarate glyceraldehyde- cluster protein putative DNA S-carboxamide putative glyoxalase superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis adenine and adenosine salvage I a (2E,9Z)-hexadeca- acyl-CoA reductase: queF dehydrogenase: acetylgalctosamine- 1-phosphate phosphoglucomutase: 3-oxoacyl-[ACP] 3-oxoacyl-[ACP] tRNA m G46 [HypE]-S- thiamin putative nonspecific putative carrier protein]-L-lysine [+ 5 isozymes] β NADH topoisomerase: chaperonin: III: yajL 2+ 2+ phosphorylation a 3-oxooctanoyl-[acp] preQ -L-rhamnopyranose 6 maltodextrin reductase: fabG reductase: fabG isopropylmalate methyltransferase: reductase ((R)-2- 3-phosphate alkaline dipeptidase: diguanylate Zn ZntA Zn 2,9-dienoyl-[acp] hydrolysis 1 zwf 6-phosphate phosphatase: pgm DNA- N -L- pyridine nucleotide oxidoreductase: carboxamide pyrophosphate membrane PRPP CTP biotin- citrate synthase: gltA formate N1- leucyl- glycerophosphoserine ribonuclease: hydrogenase hydro-lyase (2- hydroxyglutarate- dehydrogenase: yrdD Z3239 phosphatase cyclase: dgcZ glyoxalase CMP Secondary Metabolite Degradation 6-phospho deacetylase: Z4489 yihX formamidopyrimidine threonylcarbamoyladenine exodeoxyribonuclease transhydrogenase: sulfoquinovosidase: phosphorylase: proline aminopeptidase: putative beta- putative beta- trmB dehydratase: hydrolase: nudJ pepD pump Ag43 curli gln 3-oxoacyl-[ACP] palmitoleoyl- a 2,3,4-saturated fumarate tRNA-guanine L-rhamnose methyladenine tRNA--protein phosphodiesterase: ugpQ rne 4 subunit: hyfG isopropylmaleate- an N 7 - forming): serA gapC hcr [+ 2 isozymes] [+ 4 isozymes] III: elbB EcnA hydrogencarbonate adenosine cytidylate [acetyl-CoA- D-glucono- [+ 3 isozymes] glycosylase: mutM synthase: tsaB tsaD tsaE sthA malP aminopeptidase: ketoacyl-ACP ketoacyl-ACP a HypE hydrogenasehypE I: yhbX a proteinogenic [+ 4 isozymes] protein: ybhI poly-[(R)-3- reductase: fabG [acp]:NAD+ fatty acyl CoA D-galactosamine isomerase: glucokinase: V: recC recD recB transferase: aat yihQ pepB 46 a reduced hybrid- thiamine secretion amidophosphoribosyltransferase: purF adenosine acyl-CoA carboxylase] transglycosylase: tgt 1,5-lactone D-glucopyranose demethylase: pepP reductase: Z4865 reductase: Z4865 forming): leuC leuD methylguanine 2-oxoglutarate a relaxed DNA an unwound RNA ethanol hydroxybutanoate] glycolate kinase: cmk citrate formate fumarate reductase: anhydromuropeptides recycling I 6-phosphate rhaA glk 13-DPG maturation phosphate amino acid c-di-GMP a peptide Zn 2+ ABC CsgA and CsgA putative beta- oxidoreductase: ligase: birA a 7-aminomethyl-7- superpathway of hexitol degradation (bacteria) alkB a cis,cis-delta11,29- a cis,cis-delta7,25- (2S)-2- in tRNA cluster protein 2+ 2+ phosphorylase: ppnP CDP thioesterase: 6-phosphate 6 α-D- Zn Zn carbamoyl phosphate hydrogenlyase frdD frdC frdB frdA 34 6-phosphogluconolactonase: a [DNA]- an N -L- protein-S-cyanate transporter assembly 5-phospho-β- CDP ketoacyl-ACP fabI a [biotin carboxyl- deazaguanosine D-glucopyranose a 5'-phospho- a modified a double stranded DNA a [protein] sn-glycerol 6-sulfo-α-D- maltopentaose + isopropylmalate gly yciA citrate hydro- keto-L-rhamnulose 37 + a 5S rRNA an rRNA fragment NADH H 3-oxo-C48:2-[acp] 3-oxo-C44:2-[acp] adenosine CDP complex: hycE GlcNAc-1,6- pgl nucleotide- 4-oxo-2-pentenal AMP threonylcarbamoyladenine Leu ser NADH NADP glucopyranose a peptide with complex D-ribosylamine synthetase: carB carA reductase: Z4865 carrier protein]-N in tRNA [DNA] nucleobase with a RecA protein N-terminal L- a tRNA 3-phosphate a 1,2-diglyceride quinovose a proteinogenic a proteinogenic CDP reductase: phosphorylase: deoD acyl-CoA lyase: acnB hycB hycG hycC succinate anhMurNAc- galactitol glucose 1-phosphate an N-terminal a peptide 2'-deoxycytidine kinase: adk a palmitoleoyl-[acp] 6 34 D-gluconate 3'-phosphate in tRNA formaldehyde an adenine in RNA succinate leucyl-L-arginine amino acid OmpW -biotinyl-L-lysine tRNA preQ S- loaded 3' overhang amino acid LpoB vitamin diphosphate:oxidized nrdB nrdA adenine a (3R)-3- thioesterase: citrate hydro-lyase hycD hycF fdhF 1 L-Ala-γ-D-Glu- D-tagatofuranose dehydrogenase: L-proline cob(I) cob(I) phosphoribosylamine--glycine CDP adenosylmethionine 6-phosphate sucrose B ABC carbamoyl phosphate asp hydroxyoctanoyl-[acp] tesB (cis-aconitate- DAP-D-Ala 6-phosphate gcd sucrose sucrose 12 NrdH glutaredoxin-like ribonucleoside- kinase: ndk D-mannose permease inamide inamide ligase: purD a 2,3,4-saturated forming): acnA ribosyltransferase- D-sorbitol 6-phosphate 6-phosphogluconate transporter protein oxidoreductase: diphosphate tagatose-6- degradation 1 β β UDP adenine (3R)-3- fatty acid CO H isomerase: queA dehydrogenase, L-rhamnulofuranose D-glucono- an N - core oligosaccharide- iron(III)-enterobactin 3-hydroxybenzoyl- 3-O- -D- a (1->4)- a non-methylated 37 1-( -D a monocarboxylic 2-deoxy-D- a 2,3,4-saturated CTP a [biotin carboxyl- 2 2 1,6-anhydro-N- (R)-S- dCTP a guanine 5-nitro 2+ nrdF nrdE reductase: nrdF nrdE phosphate 34 a uridine in tRNA 2-oxoglutarate a 1-palmitoyl-2-acyl-sn glycerophosphoglycerol ATP 4'-phosphopantetheine H O α a tripeptide a cis,cis-delta7,19-3- an acyl-[acyl- an isocitrate (R)-malate AI-2 syringaldazine a [reduced Cu 34 galactitol 1-phosphate sorbitol-6- 1,5-lactone a 5,10- gly a uridine SAM methyladenine lipid A (E. coli 2 galactopyranosyl- -D-glucan ribosomal ribofuranosyl) a malonyl-[acp] glucose 6- aspartate phosphoribosyltransferase: apt hydroxyoctanoyl- carrier-protein dimer]- cis-aconitate 2-oxoglutarate decarboxylation to succinyl-CoA an epoxyqueuosine acetylmuramoyl- decarboxylating: gnd D-mannopyranose complex CoA lactoylglutathione dAMP in tRNA acid amide fatty acid benzisoxazole GAR 2'-deoxyuridine 5'- kinase: pfkB rhamnulokinase: -glycerol 3-phosphate dCTP hydroxyC38:2-[acp] carrier protein] dehydrogenase DsbD protein] + + formate palmitoleate superpathway of phospholipid biosynthesis I (bacteria) phosphate 2- methylenetetrahydrofolate in tRNA in DNA K-12 core type) D-arabinose protein L11 1 nicotinamide putative D-malate phosphate NADH Li NhaA Li carbamoyltransferase: dCDP UDP reductase: [acyl-carrier N 6 -biotinyl-L-lysine in tRNA L-alanine D-ribulose 6-phosphate 3-oxoacyl-[ACP] ribosomal tRNA m G37 putative beta- 2-deoxyglucose- acyl-ACP polyphenol thiol- Kemp RcsF fumarate DcuA fumarate diphosphate:oxidized AMP D-threo-isocitrate galactitol-1- dehydrogenase: D-tagatofuranose rhaB mannose-6- pyrophosphohydrolase: phosphate isocitrate dehydrogenase autoinducer- cupric CsgB pyrB pyrI nrdB nrdA protein] a [2-oxoglutarate maltodextrin dAMP reductase: fabG protein L11 methyltransferase: ribosylnicotinamide synthetase/ ketoacyl-ACP synthetase: oxidase: disulfide eliminase: phosphoribosylglycinamide acetyl-CoA biotin amidase: ampD phosphate 5- 5-phosphate 1,6-bisphosphate phosphate ferric 3-hydroxybenzoyl- hydroxyacylglutathione tripeptide nudI acyltransferase: dehydrogenase 6-phosphate 2 kinase: lsrK NrdH glutaredoxin-like dehydratase: fabZ hydro-lyase: acnB dehydrogenase epoxyqueuosine srlD L-rhamnulose tRNA 3-amino-3- N1- glycerophosphoglycerol pantetheine-phosphate kinase: nadR amidase: yjfC (decarboxylating) aas reductase: formyltransferase 2: purT CTP reductase: nrdDdCDP kinase: adk DHAP carboxyltransferase: carboxylase: 5-carboxymethylaminomethyluridine- enterobactin CoA galactoside- glucosidase: aminopeptidase: phosphohydrolase: putative beta- methyltransferase: trmD synthase: phosphatase: pgeF exchange: pdxI protein oxidoreductase: 6 reductase: queG dehydrogenase: 1-phosphate D-gluconate isomerase: carboxypropyltransferase: methyladenine adenylyltransferase: coaD hydrolase: gloB nucleoside triphosphate an N 1 - plsX kinase: aceK : dmlA (2S)-2-hydroxy- tetramethoxy ndh xanthine and xanthosine salvage 3-hydroxyacyl- D-threo-isocitrate E2 protein] N N-acetyl-β-D- L-alanyl-γ-D- D-glucitol-6- ribulose- ribose-5- tRNA synthase: mnmE mnmG phosphodiesterase: ugpQ arabinose malZ yfbR ketoacyl-ACP prmA a phosphorylated [+ 2 isozymes] Z4866 dsbD 2-cyano-4- dCDP kinase: ndk accD accA accC manA esterase: fes thioesterase: entH pepT a methylated 37 hxpB a 2,3,4-saturated asp asp nrdF nrdE hydro-lyase putative 34 gatD tapT demethylase: [+ 2 isozymes] pyrophosphohydrolase: methylguanine 2-deoxy- 3,4-dioxopentyl azobismethylene + FGAR N-carbamoyl-L-aspartate [acp] glycerol-3-phosphate a [carboxyl-carrier -lipoyl-L-lysine a queuosine glucosamine-1,6- glutamyl-meso-2,6- phosphate phosphate 3- phosphate tagatose-1,6- galactohydrolase: reductase: Z4865 NMN an acyl phosphate isocitrate a monocarboxylate pyruvate an [oxidized nitrophenol Cu YbgC succinate succinate F6P mazG ribosomal an acetoacetyl-[acp] fatty acyl-[acp] 6 (cis-aconitate- decarboxylase: keto-D-tagatose D-mannitol 1-phosphate bisphosphate rhamnulose- alkB in tRNA D-glucose phosphate quinine DsbD protein] DcuA dCTP dUDP UTP dehydratase: fabA dehydrogenase: gpsA protein dimer]-N - in tRNA anhydro-N-acetyl- diaminopimeloyl- dehydrogenase: epimerase: isomerase lacZ a (1->4)- 2'-deoxyadenosine a cis,cis-delta7,19- protein L11 dehydrogenase forming): acnA Z4047 6-phosphate D-xylose aldolase: 1-phosphate S-methyl-5'- a 3-[(3S)-3-amino- iron(III)-[N-(2,3- N-(2,3- glycerol sn-glycerol D-glucopyranose dCMP Skp (S)-malate (S)-malate phosphoribosylformylglycinamide xanthosine carboxybiotinyl-L-lysine dihydrolipoate β-D-muramate D-alanine Z5618 rpe A: rpiA a 5-carboxymethylaminomethyluridine 34 a hepta-acylated core 3'-dephospho-CoA α a proteinogenic 3-oxo-C38:2-[acp] dihydroorotase: pyrC 3-carboxypropyl]- a 1-lysophosphatidate dihydroxybenzoyl) dihydroxybenzoyl) 3-hydroxybenzoate (R)-lactate glutathione -D-glucan a dipeptide fumarate fumarate synthetase: purL sn-glycerol 3-phosphate dehydrogenase: lpd 2-oxoglutarate L,D- keto-D-fructose kbaZ kbaY aldolase: rhaD a 7,8-dihydrofolate thioadenosine oligosaccharide lipid 3-phosphate dCTP deaminase: dcd dUDP kinase: ndk UTP reductase: nrdD a (2E)-oct-2-enoyl-[acp] glcNAc-1,6- mannitol-1- xylose L-arabinose in tRNA uridine in tRNA an adenine in DNA formaldehyde succinate -L-serine] complex -L-serine β-D- amino acid xanthosine D-threo-isocitrate decarboxylase: carboxypeptidase: tagatose-1,6- A (E. coli K-12 type) D-arabinose fumarate DcuB fumarate anhMurNAcaminidase: phosphate 5- 6-phosphate isomerase: D-xylulose D-ribose 5- degradation I galactopyranose FGAM (S)-dihydroorotate phosphorylase: ppnP octanoyl-[acyl- sucA Pentose Phosphate Pathways ldcA bisphosphate melibiose degradation dUTP xanthine isocitrate nagZ D-tagatofuranose dehydrogenase: xylA 5-phosphate phosphate DHAP (S)-lactaldehyde YceO acyl-CoA:sn-glycerol- acyl-acp:sn-glycerol- a [2-oxoglutarate a [2-oxoglutarate L-alanyl-γ-D- aldolase: carrier-protein] dehydrogenase: icd 1,6-anhydro-N- 6-phosphate mtlD L-arabinopyranose 3-phosphate 1-O- 3-phosphate 1-O- peptidoglycan DNA combined with 2251 2498 2 RNase II a 1,2-diacyl- RNase E phosphoribosylformylglycinamide dihydroorotate dUTP diphosphatase: dut reductase: fabI dehydrogenase dehydrogenase glutamyl-meso- D-xylulose gatZ gatY L-arabinose a nascent peptidoglycan with (L- an aminated amino a DNA containing an RNase R degradation hydrogen (3E,5Z)-tetradeca- guanosine a cytidine N -succinyl- L-glyceraldehyde 6 a phosphate 4-nitrophenyl succinate succinate superpathway of xanthine pentose phosphate pathway (partial) acetyl-β-muramate transketolase: melibiose 34 cob(II)inamide ATP 2-oxobutanoate A(H2) a 2-lysophosphatidylcholine melibionate a cis,cis-delta5,23-3- N -(D-fructosyl) enterobactin a DNA segment a nucleoside an [oxidized isoguanine acyltransferase: plsB acyltransferase: plsB fatty acid biosynthesis 6 6 tagatose-6- a 5,10- a 2-thiouridine γ DAP-DAP ala exogenous DNA to form 13-DPG degradation sn-glycerol 3- degradation D-tartrate D-tartrate cyclo-ligase: purM dehydrogenase: pyrD [+ 2 isozymes] E2 protein] N E2 protein] N -S- diaminopimelate isomerase: gly alanyl- -D-glutamyl-meso-2,6- group donor apurinic/apyrimidinic site substrate RNA peroxide 3,5-dienoyl-CoA UDP-N-acetyl- in 23S rRNA in 23S rRNA L-ornithine 3-phosphate -L-lysine monoester diphosphate phosphate DcuB adenosine nucleotides phosphoribosyltransferase: gpt initiation III 2-oxoglutarate anhydro-N- phosphate tktB methylenetetrahydrofolate in tRNA crosslink a recombinational junction hydroxyC42:2-[acp] diphosphate substrate mRNA DsbD protein] PRPP an octanoyl-[acp] -dihydrolipoyl- succinyldihydrolipoyl- F6P putative D-glyceraldehyde araA diaminopimeloyl-D-alanine) tetrapeptide α-D-muramate 23S rRNA 2'-O 3-oxoacyl-[ACP] 23S rRNA 2'-O L-glyceraldehyde glyceraldehyde- substrate mRNA putative thiol- isoguanine (S)-malate (S)-malate orotate de novo biosynthesis I dUMP D-ribulose transketolase: succinylornithine diacylglycerol enterochelin recombinase: nucleoside AIR L-lysine L-lysine acetylmuramic kinase: pfkB xylulose DHAP D-arabinose degradation I α-galactosidase: melA resolvasome: -ribose G2251 reductase: fabG -ribose C2498 3-phosphate ribonuclease: succinate asp asp a 2-lysophosphatidate a 2-lysophosphatidate 5-phosphate 3-phosphate L-ribulose cobinamide 2-oxobutanoate endonuclease IV: nfo acyl-CoA α 3-phosphate exoribonuclease fructoselysine 3- pyrophosphate alkaline diphosphate disulfide deaminase: succinate β-ketoacyl-ACP acid kinase: 6-phosphofructokinase: kinase: tktA hydroperoxidase: -galactosidase: methyltransferase: methyltransferase: transaminase: astC esterase: fes pinE fumarate fumarate thymidylate adenine and adenosine salvage III XMP a malonyl-[acp] D-tagatofuranose peptidoglycan LD- UDP-N- ruvC ruvB ruvA putative beta- reductase: gpr dehydrogenase: II: rnb epimerase: frlC phosphatase: rne phosphatase exchange: codA FliL asp DauA asp 5-(carboxyamino) orotate IMP ribulose- fructose-1,6- 5-carboxymethylaminomethyluridine- adenosyltransferase: L,D- aminotransferase: apurinic/apyrimidinic RNase R: rnr thioesterase: melA 2 kinase: ndk asp synthase: thyA synthase: fabF malonyl-ACP anmK 1,6-bisphosphate pfkA Z4878 ribulokinase: katG endopeptidase: rlmB rlmM N -succinyl- N-(2,3- a DNA segment phosphoribosyltransferase: bisphosphatase: fbp D-sedoheptulose D-glyceraldehyde D-arabinopyranose tRNA synthase: mnmE mnmG btuR carboxypeptidase: ldtD avtA fadM acetylmuramate--L- resolution of recombinational 2-O- ketoacyl-ACP a 2-O- sn-glycerol gapC N 6 -(D-psicosyl) pgpB I: yhbX dsbD fumarate fumarate imidazole decarboxylase: phosphate 3- N-acetyl-D- araB D-galactopyranose D-glucopyranose endonuclease: xthA L-glutamate 5- D-glyceraldehyde a nucleoside 5'- dihydroxybenzoyl) in reverse a nucleoside xanthine 4-nitrophenol pyrimidine salvage II [+ 4 isozymes] acyl-CoA:1-acyl-sn- acyl-[acp]:1-acyl-sn- 6-phosphofructokinase: xylulokinase: mepA alanine ligase: murC junction formation 2251 reductase: Z4865 methylcytidine 2498 3-phosphate an mRNA fragment an alcohol a [reduced ribonucleotide pyrE dTMP dihydrolipoyltranssuccinylase: epimerase: muramate 6- [+ 3 isozymes] 7-phosphate 3-phosphate methylguanosine monophosphate -L-lysine a phosphatidate triphosphate glycerol-3-phosphate 2- glycerol-3-phosphate 2- fabB tagatose-1,6- pfkB xylB D-arabinose L-ribulose 5- α-D- of two intact strands a cis,cis-delta5,23- semialdehyde 3-phosphate -L-serine orientation DsbD protein] synthase: purK adenine sucB rpe phosphate sn-glycero-3- D-gluconate in 23S rRNA in 23S rRNA succinate succinate adenylosuccinate cytosine a 3-oxodecanoyl-[acp] O-acyltransferase: plsC O-acyltransferase: plsC an acetyl-[acp] bisphosphate β isomerase: fucI phosphate a nascent peptidoglycan with a deaminated a diribonucleotide a nucleoside 5'- A H O a carboxylate (3E,5Z)- galactopyranose 3-oxo-C42:2-[acp] dTMP kinase: tmk adenosine -D-fructose 1,6- D-xylulose a 5-carboxymethylaminomethyl- adenosylcobinamide (S)-2- a 5'-deoxyribose- 2 coenzyme A peptidoglycan peptidoglycan UDP-N-acetyl-α-D- synthetase: purA D-xylulose D-erythrose N-acetylmuramic DHAP transaldolase a 7,8-dihydrofolate triphosphate γ amino group donor a [DNA]-3'-hydroxyl monophosphate phosphocholine tetradecadienoate DcuC N5-CAIR orotidine 5'-phosphate phosphorylase: ppnP aldolase: bisphosphate 5-phosphate 2-thiouridine 34 in tRNA (L-alanyl- -D-glutamyl-meso- D-ala aminobutanoate 5-phosphate-[DNA] tetrapeptide, tripeptide, cytosine deaminase: codA acetoacetyl-[acp] 5-phosphate acid 6- A: talA L-ribulose-5- muramoyl-L-alanine YqjD dTDP pyrimidine 3-oxoacyl-[ACP] 4-phosphate kbaZ kbaY putative D-ribulose 2,6-diaminopimelate) tripeptide glycan chain 2 glycan chain 1 fumarate fumarate adenosine phosphate [+ 2 isozymes] phosphate 4- succinate succinate phosphoribosylaminoimidazole ribonucleosides salvage I uracil reductase: fabG synthase: fabF aldolase: DcuC orotidine-5'-phosphate adenylo-succinate dTDP kinase: ndk phosphorylase: deoD superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass etherase: murQ tagatose-1,6-triose- D-ribulokinase: epimerase: lactose degradation III fumarate fumarate carboxylase = AIR carboxylase, putative beta- [+ 3 isozymes] transketolase: transketolase: Z5687 decarboxylase: pyrF adenosine cytidine uracil N-acetyl-D- bisphosphatephosphate D-erythrose fucK araD catalytic subunit: purE dTDP kinase: adk ketoacyl-ACP tktB tktB a [ThiI sulfur- an intrastrand non- N,N'-diacetylchitobiose a [DNA]-nucleotide-3'- 3'-dephospho- a peptide with a cytidine 1402 RNase G an organic 6-deoxy-6- a uridine 34 adenylosuccinate F6P 7,8-dihydroneopterin a sulfurated maltose a cis,cis-delta9,27-3- 7 pyridoxine phosphoribosyltransferase: upp a phosphatidate an acetoacetyl-[acp] glucosamine aldolase:isomerase: [+ 3 isozymes] 4-phosphate L-ribulose-5- lactose an acyl-[acyl- a uracil in tRNA hydrogen cyanide adjacent cyclobutane a (3R)-3-hydroxyicosanoyl-[acp] ATP isethionate [DNA] m GTP arg a uridine in tRNA hydroxypyruvate cys histidinol degradation tellurite a signal peptide GSSG UMP dTTP reductase: Z4865 D-glucopyranose 6-phosphate transketolase: transketolase: a 1-lysophosphatidylethanolamine carrier protein]-S- 3'-triphosphate hν 6'-phosphate phosphoglycolaldehyde CoA an N-terminal thr in 16S rRNA hydroperoxide sulfo-D-fructose in tRNA 5'-phosphate lyase: purB cytidine cytidine 6-phosphate gatZ gatYtpiA D-ribulose 1-phosphate lactose carrier protein] [sulfur carrier] hydroxyC46:2-[acp] signal CAIR UMP phosphate 4- sulfanyl-L-cysteine thymidine dimer in DNA (3R)-3-hydroxyacyl- Xaa-L-proline type I site-specific 3-oxoacyl-[ACP] 16S rRNA 2'-O m 7 GTP tRNA- hydroxypyruvate histidinal/histidinol substrate mRNA thiol 6-deoxy-6- tRNA U34 tellurite glutathione adenosine deaminase: add deaminase: kinase: udk a (3R)-3- putative phosphatidate tktA tktA transketolase: threonine MreC UMP kinase: pyrH glucose-6-phosphate N-acetylglucosamine- epimerase: galactohydrolase: reductase: fabG -ribose C1402 arginine N- dihydrouridine reductase: ghrB cysteine dehydrogenase: ribonuclease: peroxidase: reductase: peptide FtsY AMP cytidiltransferase: Z2318 tktB chitin [acyl-carrier protein] dephospho- isethionate deoxyribonuclease: dehydrogenase: tdh pyrophosphatase: sulfofructose hydroxylase: reductase: phosphoribosylaminoimidazole- cdd hydroxydecanoyl-[acp] 6-phosphate D-glyceraldehyde D-galactose degradation I (Leloir pathway) ulaF lacZ 6-carboxy-5,6,7,8- putative thiosulfate 3'-phosphodiesterase: amylomaltase: succinyltransferase: synthase: dusA transaminase: bcp narI narH narG peptidase: isomerase: pgi D-glyceraldehyde D-ribulose- β-D- tRNA uridine 4- dehydratase: fabZ hsdM Z5948 Z5946 putative beta- methyltransferase: yceF hydroxypyruvate hisD rng kinase: yihV trhO gor succinocarboxamide CMP CDP-diglyceride 3-phosphate transketolase: 2-acylglycerophosphoethanolamine deoxyribodipyrimidine disaccharide CoA kinase: aminopeptidase: malQ monooxygenase: L-threonine 7 UDP (3R)-3- deacetylase: nagA tetrahydropterin sulfurtransferase: nfo a double stranded rsmI N - astA [+ 2 isozymes] reductase: ghrA aspC [+ 2 isozymes] 6-deoxy-6- a 5- [+ 3 isozymes] rseP adenylate 3-phosphate phosphate D-xylulose galactopyranose sulfurtransferase: thiI 3-hydroxyacyl-[acp] ketoacyl-ACP a 2'-O- 2 synthase: purC uridine synthetase: cdsA tktA acyltransferase: aas photolyase: phr deacetylase: chbG coaE pepA ssuD dehydrogenase: yiaY N -succinyl- 2-oxo-3- 34 inosine F6P D-glucosamine glyceraldehyde- β-D-galactopyranose synthase: queD sseA DNA with 5'- methylguanosine a 5,6-dihydrouridine his hydroxyuridine 0 glutathione pyridoxine kinase: adk hydroxydecanoyl- aldolase: fucA 5-phosphate dehydratase: fabA reductase: Z4865 methylcytidine 1402 D-glycerate an mRNA fragment an alcohol sulfo-D-fructose Te a peptide UDP kinase: ndk cyclopropane D-glyceraldehyde aminoacetone L-arginine in tRNA sulfanylpropanoate SAICAR uridine [acyl-carrier a CDP-diacylglycerol 6-phosphate 3-phosphate terminal phosphate a cis,cis-delta9,27- in 16S rRNA 5'-phosphate 1-phosphate in tRNA UDP kinase: adk UDP reductase: nrdB nrdA fatty acid (CFA) 6-phosphofructokinase: 3-phosphate galactose-1- N-monoacetylchitobiose a (2E)-icos-2-enoyl-[acp] a [DNA]-3'- glycolaldehyde D-glucopyranose maltotriose ADP kinase: udk protein] dehydrogenase: a [ThiI sulfur-carrier a 4-thiouracil in tRNA + a peptide with 3-oxo-C46:2-[acp] PpiD inosine phosphorylase: ppnP fructose-1,6- phosphoglucosamine epimerase: galM glycolaldehyde 6-carboxy-5,6,7,8- thiocyanate an unsulfurated a DNA with acetate phosphate ADP coenzyme A H glycolaldehyde sulfite EttA 5'-phosphoribosyl-4-(N- biosynthesis pfkA gapA DHAP fructose degradation a phosphatidylethanolamine acetaldehyde 6'-phosphate hydroxyl a proteinogenic gln inosine phosphorylase: deoD dehydratase: fabZ bisphosphatase: fbp mutase: glmM glyceraldehyde- protein]-L-cysteine tetrahydropterin triphosphate [sulfur carrier] nonadjacent an N-terminal UTP UMP CDP-diacylglycerol--glycerol- phosphatidylserine a [phospholipid] cis 6-phosphofructokinase: amino acid succinocarboxamide) ADP reductase: [+ 3 isozymes] glyceraldehyde- 3-phosphate α-D-galactopyranose glycolaldehyde L-proline 3-hydroxydecanoyl- synthase: pssA -olefinic fatty acid pfkB α-D-glucosamine β-D-fructofuranose -5-aminoimidazole dUDP nrdB nrdA 3-phosphate 3- cyclopropane 3-phosphate dehydrogenase: dehydrogenase: sucrose degradation I [acp] 1-phosphate 1-phosphate lyase: purB CTP synthetase: pyrG hypoxanthine phosphatidyltransferase: fatty acyl dehydrogenase: gapA aldA (sucrose phosphotransferase) 1-phosphofructokinase: 6 dehydrase: fabA β putative α α an (S-diacyl-sn- β α α α 527 3+ 3+ dUDP kinase: ndk pgsA DHAP -D-fructose 1,6-bisphosphate glucosamine- -Kdo-(2->4)- -Kdo- ADP-L-glycero- - -Kdo-(2->4)- a [TusE sulfur 1,N - N-acetyl-9-O- 4-(γ-L-glutamylamino) 5-phospho- - 1-(6-sulfo- - UTP a guanine a cytidine D-glyceraldehyde L-glyceraldehyde a supercoiled (2E,4Z)-deca- type-1 Fe AfuB Fe pyrimidine a phosphatidylserine phospholipid gapC fruK a phosphatidylethanolamine a phosphoglyceride a uridine 34 in tRNA glutathione bromoacetate glutathionylspermidine a cis,cis-delta5,17-3- (S)-lactaldehyde riboflavin a sugar phosphate an oligopeptide enol-oxaloacetate citrate a 23S rRNA cysteamine dADP glyceraldehyde- galactokinase β (2->6)-lipid IV (E. coli) glyceryl)-L-cysteinyl- D-manno-heptose α-Kdo-(2->6)- carrier protein]-S 2-oxoglutarate ethenoadenine a myristoyl-[acp] D-ribose 1,2- D-quinovosyl) MEP 32 transmembrane AICAR hypoxanthine 1-phosphate sucrose -D-fructose 1,6- A acetylneuraminate butanoate in 16S rRNA in tRNA 3-phosphate 3-phosphate duplex DNA 2,4-dienoyl-CoA RclC CTP phosphorylation a (2E)-dec-2-enoyl-[acp] synthase: cfa glycolate UTP hydroxyC36:2[acp] S-phosphate dUTP a [phospholipid] putative aldolase: Z5687 3-phosphate (EC 2.7.1.6).: wcaK [apolipoprotein] lipid IV (E. coli) -sulfanylcysteine in DNA cyclic phosphate glycerol 7 glyceraldehyde- flavin sugar sugar putative oxaloacetate aconitate 2,4-dienoyl- proteins phosphoribosyltransferase: hpt acetyltransferase: bisphosphate A putative beta-ketoacyl- 5-phospho-α-D-ribosyl pyrophosphatase: yhdE 1-deoxy-D-xylulose 3-oxoacyl-[ACP] 16S rRNA m G527 tRNA Cm32 (S)-lactaldehyde AICAR a phosphatidylglycerophosphate fatty acid containing triose-phosphate [+ 3 isozymes] 13-DPG dehydrogenase: galactokinase: galK 3-phosphate reductase: cysJ oligopeptidase: helicase: hydratase rhomboid dTMP dCMP glmU ACP synthase: Z4866 γ γ reductase: fabG methyltransferase: methyltransferase: reductase: yahK phosphatase: phosphatase: keto-enol- CoA an aromatic an aromatic dUTP diphosphatase: dut hypoxanthine decanoyl-[acyl- isomerase: tpiA Kdo2-lipid VI 6 bromoacetate N-acetyl-9-O- -glutamyl- - 1,2-cyclic phosphate nucleoside triphosphate 5-phosphate transformylase: dADP kinase: ndk dTMP dCMP cyclopropane gapC A ADP-heptose:Kdo 1,N - glutathionylspermidine dehydrogenase: riboflavin hxpA prlC ybiV Z5901 isomerase: 1: acnA reductase: protease: YifK [+ 2 isozymes] phosphoribosyltransferase: gpt N-acetyl-α-D- phosphoethanolamine apolipoprotein N- 2 tRNA-specific dehalogenase: putative beta-ketoacyl- acetylneuraminate aminobutyrate phosphodiesterase: reductoisomerase: dxr putative beta- rsmG trmJ [+ 3 isozymes] amino acid amino acid purH kinase: tmk kinase: cmk carrier-protein] phosphatidylglycerophosphatase: phosphoglycerate α α -lipid IV - ethenoadenine sulfoquinovosidase: pyrophosphohydrolase: 7 gapC glpG a phosphatidylethanolamine -D-galactose 1-phosphate UDP- -D-glucose G A 2-thiouridylase: amidase: gss 1-deoxy-D- an N - a 2'-O- reductase: fre [+ 2 isozymes] [+ 2 isozymes] [+ 9 isozymes] fumA AcnB: acnB fadH CDP reductase: fabI glucosamine kinase: pgk sucrose 6 7''-transferase: eptB acyltransferase: lnt gstB [acyl carrier protein] esterase: nanS hydrolase: puuD phnP yihQ mazG ketoacyl-ACP cleaved type-1 dUMP dTDP dCDP pgpB D-glyceraldehyde 3-phosphate 13-DPG heptosyltransferase: repair: alkB α-D-ribose 1,5- methylguanine 527 methylcytidine 32 (S)-propane-1,2-diol 3-phospho- a peptide a single (2E)-dec-2- an rRNA fragment cysteamine formate FocA formate FAICAR IMP 1-phosphate -phosphate mnmA synthase: Z1549 xylulose 5- reductase: Z4865 reduced riboflavin a sugar L-glyceraldehyde oxaloacetate D-threo-isocitrate transmembrane CDP reductase: nrdB nrdA phosphatidylglycerophosphatase: waaC bisphosphate UMP in 16S rRNA in tRNA D-glycerate stranded DNA enoyl-CoA dATP dTDP dCDP a decanoyl-[acyl-carrier protein] N-acetylglucosamine- 7-O-[2-aminoethoxy(hydroxy) an N-acyl-(S-diacyl- phosphate a cis,cis-delta5,17- proteins ribonucleoside-diphosphate thymidylate synthase: thyA superpathway of 5-aminoimidazole glyceraldehyde- 3-phospho-D-glycerate a 3-oxohexadecanoyl-[acp] putative IMP kinase: ndk kinase: adk pgpA phosphoglycerate a 1,2-diacyl-sn-glycerol a 1-lysophospholipid S-(acet-2-yl) glutathione spermidine N-acetylneuraminate 6-sulfo-α-D- 3-oxo-C36:2-[acp] 1-phosphate sucrose phosphoryl]-α-D-Kdo-(2->4) sn-glyceryl)-L- heptosyl- 34 succinate bromide acetate 4-aminobutanoate reductase: nrdF nrdE ribonucleotide biosynthesis 3-phosphate kinase: pgk a 2-thiouridine a [TusE sulfur carrier glyoxal an adenine in DNA -glutathione glu quinovose glycerol amino cyclohydrolase: dTDP dCDP β-ketoacyl-ACP uridyltransferase: phosphoglyceromutase hydrolase: -α-D-Kdo-(2->6)-lipid IV cysteinyl-[lipoprotein] ADP an aromatic an aromatic formate FocB formate dTMP a phosphatidylglycerol dehydrogenase: gapA A Kdo -lipid IV in tRNA protein]-L-cysteine acid/amine purH dCDP phosphoglycerate 3-phospho- fucose degradation 2 A amino acid amino acid kinase: adk kinase: ndk synthase: fabF glmU 2: gpmB Z3625 transport PRPP glyceraldehyde- mutase: gpmA D-glycerate dCDP kinase: adk dTMP kinase: tmk [+ 4 isozymes] UDP-N-acetyl- 2,3-bisphosphoglycerate- dTTP dCTP cardiolipin synthase: clsB cardiolipin synthase: clsC 3-phosphate β protein superpathway of β -D-glucose an E. coli osmoregulated a partially deacetylated poly-β- 37 molybdopterin an N-acetyl-β- 1207 966 a medium-chain D-myo-inositol IMP dCDP kinase: ndk amidophosphoribosyltransferase: purF α-D-glucosamine independent phosphoglyceromutase -L-fucopyranose β-D-fructofuranose an adenine a deoxyinosine a guanine a guanine D-erythro-7,8- β-D-fructofuranose α D-glucose 1- an organic N-acetyl-D- a single- a phosphate D-xylose XylFGH D-xylose dehydrogenase: gapC a phosphatidylethanolamine molybdate nitrite an alkylated DNA D-phenylhydantoin a CDP-diacylglycerol (S)-5-hydroxyisourate a [protein]-L-lysine (R)-lactaldehyde 2,3,4-saturated -D-ribose 1,5- prenol 2-keto-L-gulonate (1,2,3,4,5)- dTDP guanosine nucleotides β a 3-oxododecanoyl-[acp] phosphoglycerate 2: gpmB 6-phosphate periplasmic glucan (OPG) 1,6-N-acetyl-D-glucosamine I in tRNA adenine MEP a dodecanoyl-[acp] in DNA D-hexosaminide in 16S rRNA dihydroneopterin 1-phosphate phosphate hydroperoxide glucosamine stranded RNA 5-phospho- - UDP-N-acetylglucosamine CTP dGTP in 16S rRNA bisphosphate monoester a dipeptide DtpD a dipeptide dCTP de novo biosynthesis I L-fucose dinucleotide 2 2 peptidyl-lysine N- fatty acyl CoA alkyl 2,5-diketo- pentakisphosphate D-ribosylamine 13-DPG 1-carboxyvinyltransferase: mutase: gpmM 2,3-bisphosphoglycerate- D-fructokinase: putative beta-ketoacyl- 16S rRNA m G1207 16S rRNA m G966 (R)-lactaldehyde fructose-1- ribose 1,5- sugar N-acetyl-D- 3-oxoacyl-[ACP] mutarotase: fucU phenylhydantoinase: 5-hydroxyisourate acetyltransferase: dihydroneopterin acyl-CoA isopentenol dTDP kinase: ndk Ptd Gro Z3624 β 2 ACP synthase: Z4866 β phosphatase: phosphatase: hydroperoxide D-gluconate glucosamine 2 murA independent endo-poly- -1,6- tRNA m A37 -N- DNA-3- methyltransferase: nucleoside triphosphate methyltransferase: reductase: yahK bisphosphate phosphoribosylamine--glycine reductase: fabG phosphoethanolamine molybdopterin nitrite reductase - NADH deoxyribonuclease hyuA CDP-diacylglycerol hydrolase: hiuH yjaB epimerase: folB dehydrogenase: reductase: kinase: thiM reductase: inosine 5'- dTDP kinase: adk IMP phosphatidylglycerol biosynthesis I (plastidic) UDP-N-acetyl-α- 2-phospho-D-glycerate phosphoglycerate α D-glucosamine 2-C-methyl-D- putative beta-ketoacyl- acetylglucosaminidase: rsmC pyrophosphohydrolase: rsmD [+ 3 isozymes] yqaB phosphokinase: ybiV kinase: nagK phosphoglycerate -L-fucopyranose methyltransferase: methyladenine 2 2 fadE ZapA ligase: purD putative beta- F6P transferase: opgE molybdotransferase: dependent: nirB nirD erythritol 4-phosphate V: nfi diphosphatase: cdh an N - (S)-2-oxo-4- an N - [+ 3 isozymes] ahpF ahpC dkgB N-acetyl-D- a nucleoside YegT a nucleoside monophosphate D-glucosamine- mutase: gpmM hydrolase: pgaB [acyl carrier protein] nagZ mazG 6 D-threo-7,8- [+ 3 isozymes] phnN [+ 2 isozymes] D-myo-inositol kinase: pgk rlmN glycosylase: alkA N-carbamoyl-D- 1207 966 a [protein]-N - a medium-chain 2,5-didehydro- dTTP ketoacyl-ACP moeA nitrite reductase: nirC cytidylyltransferase: ispD methylguanine hydroxy-4-carboxy- methylguanine (R)-propane-1,2-diol prenyl phosphate glucosamine an rRNA fragment an alcohol dehydrogenase: inosine 5'- DHAP enolpyruvate enolase: eno 2-phospho- UDP-glucose:α- putative UDP- L-fucose synthase: Z1549 phenylglycine dihydroneopterin β-D-fructofuranose PRPP D-glucopyranose an alcohol (2,3,4,5) adenine and GAR reductase: Z4865 acetyl-L-lysine (2E)-2-enoyl-CoA D-gluconate 6-phosphate guaB monophosphate 3-phospho-D-glycerate isomerase: fucI β in 16S rRNA 5-ureidoimidazoline dGMP in 16S rRNA tetrakisphosphate glycerol-3-phosphate UDP-N- D-glycerate D-galactose- galactose 4- an E. coli osmoregulated a partially deacetylated a partially deacetylated a 2- MoO - a 3-oxotetradecanoyl-[acp] a 5'-phospho- a deoxyinosine- an N-acetyl- - a DNA containing CMP adenosine 2 an alkylated dehydrogenase: phosphoribosylglycinamide phosphoribosylglycinamide adenine salvage a 1,2-diacyl-sn-glycerol + 4-(cytidine 5'-diphospho) an alcohol a phosphatidate a (3R)-3- lipid IV biosynthesis (E. coli) dehydrogenase: gpsA acetylenolpyruvoylglucosamine 1-phosphate epimerase: Z3206 periplasmic glucan with poly-β-1,6-N-acetyl-D- poly-β-1,6-N-acetyl-D- 5'-deoxyadenosine methyladenine 37 AMP ammonium NAD H O [DNA] [DNA]-3'-hydroxyl D-hexosamine an apurinic/ salvage V A phosphoenolpyruvate enolase: L-fuculose met molybdopterin 2 nucleobase guaB formyltransferase 2: purT formyltransferase 1: purN hydroxydodecanoyl-[acp] phosphoglyceromutase reductase: murB uridylyltransferase: phosphotidylethanolamine substituent glucosamine (fragment 1) glucosamine (fragment 2) -2-C-methyl-D-erythritol sn-glycerol 3-phosphate phosphoglycerate eno UDP-glucose 4- trehalose degradation II (cytosolic) in tRNA cofactor apyrimidinic site WecH 2: gpmB galT (3R)-3- a (3R)-3- UDP-N-acetyl- pyruvate epimerase: galE L-fuculokinase: adenine XMP FGAR adenine mutase: gpmA phosphoenol α-D-glucopyranose 1-phosphate α XMP hydroxytetradecanoyl- UDP-N-acetyl- 2,3-bisphosphoglycerate- α-D-muramate kinase: pykA UDP- -D-galactose fucK adenosine hydroxydodecanoyl- acyl-acp:sn-glycerol- phosphoenolpyruvate α α α α [acp] α-D-glucosamine independent pyruvate , -trehalose -D-Kdo-(2->4)- -D- an [L-cysteine desulfurase]- an N-terminal a 5-carboxymethylaminomethyl- a [DNA]-nucleotide- a methyl-esterified a DNA-3'- a guanine 2445 adenine 1618 an [RNA]-3'- a guanine 745 uridine 746 succinate GDP-4-dehydro- α-D-mannose an adenosine 34 5-dehydro- [acyl-carrier protein] 3-phosphate 1-O- synthetase: ppsA pyruvate a phosphatidylethanolamine a [TusA]-L-cysteine an L-phenylalanyl- ammonium ATP hydrogencarbonate a β-D glucoside lactulose a primary alcohol H NADP + a ribonucleoside L-idarate phosphocholine phosphorylase: phosphoribosylformylglycinamide UDP-N- Kdo-(2->6)-lipid A (E. coli) 34 homogalacturonan deoxyribose- 2 ribonucleoside- ser L-kynurenine L-allo-threonine α L-dopa Arg2 xanthosine-5'- phosphoglycerate pyruvate phosphoglucomutase: L-fuculose 1-phosphate S-sulfanyl-L-cysteine L-lysyl-[protein] Phe 2-thiouridine in tRNA 3'-phosphoglycolate in 23S rRNA in 23S rRNA in 23S rRNA in 23S rRNA semialdehyde -D-rhamnose 1-phosphate in [tRNA ] D-gluconate ser xanthosine-5'- dehydratase: fabZ acyltransferase: plsB kinase: pykF [tRNA ] 3'-phosphate fucose ppnP synthetase: purL acetylmuramate:L- 5-phosphate alcohol 2 6 2',3'- 1 sugar tRNA 2,5-diketo- phosphate:L- phosphate:L- adenine adenine deaminase: adeD acyl-[acyl-carrier- mutase: gpmM kinase: pgm trehalase: treF 23S rRNA m G2445 23S rRNA m A1618 23S rRNA m G745 23S rRNA succinate serine L-idarate 3-hydroxyacyl- alanyl-γ-D- dehydrogenase: adhE 3-hydroxy acid aspartate 3-hydroxy acid synthetase: fcI 4,5-DOPA 34 adenosine glutamine phosphoribosyltransferase: apt protein]--UDP-N- cyclophosphate methyltransferase: 746 semialdehyde 3'-nucleotidase: phosphatase: adenosine D-gluconate PhoU glutamine a 2-lysophosphatidate pyruvate pykA trehalase, periplasmic: treA Kdo2-lipid A IscS:TusA 5-aminomethyl- lactulose putative methyltransferase: methyltransferase: RNA 2',3'-cyclic dehydrogenase pseudouridine aminotransferase: dioxygenase deaminase: epimerase: FGAM [acp] 2-phospho-D-glycerate glutamyl-meso- L-fuculose- phenylalanyl- putative kinase: yahI 3'-phosphodiesterase: alcohol hydrogenase umpG dehydrogenase GDP-L-fucose ybiV deaminase: reductase: amido- phosphorylase: amido- acetylglucosamine O- pyruvate D-glucopyranose 6-phosphate phosphoethanolamine sulfurtransferase: 2-thiouridine galactohydrolase: pectinesterase: rlmL rlmF phosphodiesterase: rlmA synthase: rluA reductase: yihU tdcG gudD phosphate putative carbamate 3'-phosphodiesterase: 2 6 1 YdfG: ydfG aspC YdfG: ydfG extradiol: ygiD deoD ligase (AMP- dehydratase: fabA acyl-[acp]:1-acyl-sn- diaminopimelate tRNA--protein xthA dehydrogenase: adhP 4 subunit: hyfG an N - an N - an N - 746 synthase: fcl tadA ghrB ligase (AMP- asp acyltransferase: lpxA lacZ ybhC a pseudouridine [+ 2 isozymes] 34 AMP hypoxanthine kinase: aldolase: fucA β-D-glucopyranose α-D-glucopyranose 7''-transferase: eptB tusA synthase: mnmC nfo 2445 1618 thpR 745 an inosine 2,5-didehydro- [+ 3 isozymes] adenosine forming): guaA phosphoribosylformylglycinamide glycerol-3-phosphate 2- enolase: eno ligase: mpl trehalose degradation I (low osmolarity) transferase: aat kinase (EC 2.7.2.2): arcC methylguanine methyladenine an [RNA]-3'- methylguanine 2-aminoacetaldehyde 4-hydroxybutanoate kynurenate a ribonucleoside aminoacetone GDP-β-L-fucose 4,5-seco-dopa D-glucarate choline forming): guaA an aldehyde in 23S rRNA D-mannose Arg2 cyclo-ligase: purM a (2E)-dodec-2-enoyl-[acp] O-acyltransferase: plsC pykF ribunucleoside- in [tRNA ] D-gluconate pyruvate UDP-3-O-[(3R)-3- UDP-N-acetyl- a non in 23S rRNA in 23S rRNA in 23S rRNA adenylosuccinate hypoxanthine 7-O-[2-aminoethoxy(hydroxy) D-glucopyranose β-D- a [DNA]-3'- adenosine hydroxymyristoyl]-N- pyruvate an [L-cysteine a [TusA sulfur-carrier protein]- L-phenylalanyl- a 5-(aminomethyl)-2- glucosylated D- D-fructofuranose a homogalacturonan + 2'-phosphate GMP GMP AIR α-D-muramoyl- α,α-trehalose 6-phosphate DHAP (S)-lactaldehyde phosphoryl]-α-D-Kdo-(2->4) a 1,2-diacyl-sn-glycerol glyoxylate galactopyranose 2-phosphoglycolate MeOH a [DNA]-3'- 2-deoxy-D-ribose NADPH H synthetase: purA phosphoribosyltransferase: hpt dodecanoyl-[acyl- α a phosphatidate phosphoenolpyruvate a tRNA Phe carbamoyl phosphate 34 hydroxyl LapA deaminase: acetyl- -D-glucosamine L-alanyl-γ-D- α desulfurase]-L-cysteine S-sulfanyl-L-cysteine L-lysyl-[protein] thiouridine in tRNA glucose acceptor hydroxyl 5-phosphate carrier-protein] UDP-3-O-acyl-N- - -D-Kdo-(2->6)-lipid A add hypoxanthine putative phosphatidate glutamyl-meso-2,6- guanylate reductase: fabI acetylglucosamine phosphoenolpyruvate pyruvate kinase: pykA D-lactate D-glucopyranose guanylate adenylo-succinate phosphoribosyltransferase: gpt cytidiltransferase: Z2318 diaminopimelate trehalose-6-phosphate kinase: gmk deacetylase: lpxC synthetase: ppsA pyruvate kinase: pykF dehydrogenase: kinase: gmk inosine superpathway of pyrimidine hydrolase: treC 34 an [L-cysteine a (7Z,10Z,13Z,16Z 1835 1402 1498 YhaV endonuclease a dodecanoyl-[acp] a 5,10- a 2-thiouridine 32 sn-glycero-3- a guanine a cytidine a uracil (5Z)- 3-methylbutanoyl- D-glucosamine D-mannitol L-ribulose 5- IMP UDP-3-O-(3- CDP-diglyceride ldhA glucokinase: glk a cytosine glutathione dehydroascorbate F6P maltose maltohexaose maltohexaose maltoheptaose (indol-3-yl)acetamide shikimate pantetheine DNA with lesion (R)-NADHX dodecyl sulfate adenylosuccinate nucleobases salvage (R)-4'- cys methylenetetrahydrofolate in tRNA desulfurase]-S- ,19Z)-3-oxodocosa- a 3-oxodocosanoyl-[acp] ala an acyl phosphate degradation O-phosphoethanolamine 6-phosphate 1-phosphate phosphate 3',5'-ADP GDP hydroxymyristoyl) synthetase: cdsA pyruvate (S)-lactate in tRNA phosphoethanolamine in 23S rRNA in 16S rRNA in 16S rRNA tetradecenoyl-CoA CoA GDP lyase: purB phosphopantothenate CTP sulfanyl-L-cysteine 7,10,13,16,19-pentaenoyl-[acp] putative synthetase/ 2 4 3 substrate mRNA Nucleotide L-ribulose-5- HdeD uracil purine deoxyribonucleosides salvage α glucokinase: glk 3-oxoacyl-[ACP] 3-oxoacyl-[ACP] 23S rRNA m G1835 16S rRNA m C1402 16S rRNA m U1498 shikimate acyl-CoA isovaleryl-CoA sugar mannitol-1- 3'(2'),5'- NADHX inosine - -D-glucosamine D-glucopyranose glutamate--pyruvate pantetheine uracil β-ketoacyl-ACP a CDP-diacylglycerol pyruvate (R)-lactate D-glucopyranose 6-phosphate D-glucopyranose 6-phosphate reductase: fabG maltodextrin amidase: yjfC reductase: fabG methyltransferase: methyltransferase: methyltransferase: acylphosphatase: dehydrogenase: dehydrogenase: dehydrogenase: ribonuclease: phosphatase: phosphatase: excision phosphate 3- bisphosphate epimerase: AMP kinase: gsk UDP-3-O-(3- 5-aminomethyluridine- 32 oxidized fructose-6- amylomaltase: maltohexaose aminotransferase: alaC GDP GDP dehydrogenase: tRNA cytosine 2- L-1-glycerophophorylethanolamine putative synthetase/ yccX kinase: coaA yhaV ybiV hxpB repair: uvrA epimerase: phosphoribosyltransferase: upp synthase: fabF hydroxymyristoyl) phosphopantothenoylcysteine tRNA synthase: glutaredoxin: phosphate putative beta- phosphorylase: putative beta- rlmG rsmH glutamate--pyruvate rsmE ydiB fadE aidB nucleotidase: nnr reductase: CDP-diacylglycerol--glycerol- aceF aceE lpd sulfurtransferase: phosphodiesterase: ugpQ malQ glucosidase: malZ amidase: ygiC an N 2 - an N 4 - an N 3 - uvrB uvrC ulaE adenylate UMP kinase: ndk 2'-deoxyguanosine 2'-deoxyadenosine [+ 4 isozymes] glucosamine N- synthetase: dfp ketoacyl-ACP malP ketoacyl-ACP (2E,5Z)- 3-methylcrotonyl- [+ 2 isozymes] [+ 3 isozymes] cysQ 3-phosphate 3- mnmE mnmG grxA aldolase: fsaB 1835 1402 aminotransferase: alaA 1498 3-dehydroshikimate 4'-phosphopantetheine ethanolamine DNA without L-xylulose (S)-NADHX dodecan-1-ol GDP IMP GDP nrdB nrdA superpathway of guanine and guanosine salvage laurate ttcA (indol-3-yl)acetate methylguanine methylcytidine methyluracil a carboxylate tetradecenoyl-CoA an mRNA fragment D-glucosamine D-mannitol kinase: adk acyltransferase: phosphatidyltransferase: acetyl-CoA a (3R,7Z,10Z,13reductase:Z,16Z Z4865 reductase: Z4865 pyruvate CoA lesion 5-phosphate AMP GDP reductase: UMP kinase: pyrH kinase: adk Amino Acid Degradation a (3R)-3- in 23S rRNA in 16S rRNA in 16S rRNA YfhM short chain lpxD pgsA L-glutamate degradation VII (to butanoate) (R)-4'- ,19Z)-3-hydroxydocosa- α-D- kinase: ndk nrdB nrdA a 3-oxotetradecanoyl-[acp] L-lysine degradation I L-threonine degradation I L-serine degradation L-asparagine a 5-(aminomethyl)-2- 32 an [L-cysteine sn-glycerol D-glyceraldehyde maltoheptaose D-glucopyranose D-glucopyranose maltopentaose maltohexaose ADP UDP-2-N,3-O-bis[(3R)- oxaloacetate phosphopantothenoyl- a 7,8-dihydrofolate a 2-thiocytosine ethanolamine L-ascorbate GSSG dihydroxyacetone glucopyranose hydroxydocosanoyl-[acp] UDP acyl-CoA degradation I 34 desulfurase]- 7,10,13,16,19-pentaenoyl-[acp] GDP dGDP thiouridine in tRNA in tRNA 3-phosphate 3-phosphate dGMP dAMP guanosine synthetase: fadK 3-hydroxytetradecanoyl]- a phosphatidylglycerophosphate CMP L-cysteine 1-phosphate kinase: adk 3-oxoacyl-[ACP] citrate synthase: gltA glu L-cysteine 2'-deoxyadenosine 5'- UDP kinase: ndk GTP α-D-glucosamine lys ser ADP reductase: fabG fatty acyl-CoA thr diphosphate:oxidized UDP kinase: adk dGDP UDP-2,3- phosphatidylglycerophosphatase: asn reductase: deoxyguanylate synthetase: fadD lysine serine 2'-deoxyguanosine 5'- NrdH glutaredoxin-like kinase: adk putative beta- malate putative threonine deaminase: ilvA Aromatic Compound Degradation an (S-diacyl-sn- 1518 1516 2030 18 2 a 3-dehydro- a 2'- UTP diacylglucosamine pgpB deaminase: L-asparaginase: an [HPr]- phosphoenol a [protein]- a DNA methyl hydrogen a dimer of adjacent a pyrimidine nucleoside adenine / a guanine adenine a guanosine 54 (7Z)- 2-methyl-1,4- N -succinyl- D-ribose 5- D-sorbitol 2+ thioredoxin nrdB nrdA kinase: gmk guanosine acetyl-CoA malate:quinone glutamate decarboxylase: cadA [+ 2 isozymes] a phosphatidylethanolamine quercetin menadiol hν maltoheptaose choline an adenine in DNA an mRNA a uracil in tRNA aminoacetone ppGpp Ap4A Ins(1,2,3,4,5,6)P diacetyl Cu diphosphate:oxidized protein oxidoreductase: ketoacyl-ACP dehydrogenase: mdh glyceryl)-L-cysteinyl- L-histidine pyruvate L-cysteine phosphotriester peroxide thymidines in DNA adenine 1519 in 16S rRNA a 3-oxodocosanoyl-[acp] in 16S rRNA in 23S rRNA in tRNA tetradecenoyl-CoA benzoquinone L-arginine phosphate 6-phosphate D-guloside deoxyribonucleoside 6 disulfide dGDP phosphorylase: lauroyl-CoA diphosphatase: lpxH phosphatidylglycerophosphatase: oxidoreductase: mqo lysine tdcG ansA NrdH glutaredoxin-like nrdF nrdE reductase: Z4865 [+ 23 isozymes] mutase L-valine degradation I (2Z)-2-aminobut-2-enoate [apolipoprotein] 16S rRNA m 6 putative 2 6 sequence-specific 5 sugar sorbitol-6- 3-dehydro- 3'-monophosphate dGDP CTP synthetase: pyrG kinase: ndk ppnP pgpA asp 3-phenylpropanoate and 3-(3- 2 3-oxoacyl-[ACP] 16S rRNA m G1516 23S rRNA m A2030 tRNA (Gm18) 2'-O- tRNA(m U54) D-aminopropanol acyl-CoA NAD(P)H:quinone ppGpp diadenosine diacetyl cupric guanosine lipid X malate synthase A: aceB decarboxylase: ldcC 2-aminoprop-[+ 3 isozymes] cinnamate and 3-hydroxycinnamate 6 N-succinylarginine D-guloside 4- protein oxidoreductase: dGDP dADP (S)-malate citrate subumit: hydroxyphenyl)propanoate degradation 4-hydroxyphenylacetate ribosylpyrimidine A1518,m A1519 adenine-specific reductase: fabG methyltransferase: methyltransferase: methyltransferase: endoribonuclease methyltransferase: dehydrogenase: dehydrogenase: oxidoreductase: phosphatase: phosphohydrolase: phosphatase: reductase: reductase: GTP guanosine a (3R)-3- cadaverine quercetin 2,3- phosphoenol methylphosphotriester- menadiol:hydrogen maltoheptaose 2 choline tetraphosphatase: nrdF nrdE CTP kinase: gsk a phosphatidylglycerol Z0895 2-enoate degradation to 2-hydroxypentadienoate degradation deoxyribodipyrimidine nucleosidase: rihB dimethyltransferase: methylase: yfcB GhoS: ghoS dihydrolase: astB ybiV hxpB epimerase: ATP dGTP hydroxytetradecanoyl-[acp] lipid A apolipoprotein N- dioxygenase: pyruvate:protein DNA-protein-cysteine S peroxide monooxygenase: putative beta- rsmJ rlmJ trmH trmA gldA fadE qorB nudG apaH ucpA rclA dADP phosphorylase: val glucosidase: malZ 2 6 ycjR guanine amino 3-phenylpropanoate acyltransferase: lnt photolyase: phr 6 rsmA 1518 [+ 3 isozymes] an N - an N - a 2'-O- [+ 2 isozymes] 54 2 [+ 2 isozymes] [+ 3 isozymes] D-myo-inositol dGDP disaccharide cadaverine (4-hydroxyphenyl) N -dimethyladenine ketoacyl-ACP a 5-methyluracil (R)-1- (2E,7Z)- methyl-1,4- N -succinyl- a 3-dehydro- + dGDP deoD yhhW phosphotransferase: ptsI methyltransferase: ada oxidoreductase: ccp yeaW yeaX 1516 2030 18 a 2'- dADP phosphoribosyltransferase: gpt (3R)-3- cinnamate 6 methylguanine methyladenine methylguanosine pGp ADP (1,2,3,4,5)- (S)-acetoin Cu EcnA kinase: adk synthase: lpxB citrate hydro-lyase: acnB acid aminotransferase: patA acetate /N 6 -dimethyladenine 1519 an N -methyladenine in DNA reductase: Z4865 an mRNA fragment in tRNA aminopropan-2-ol tetradecenoyl-CoA benzoquinol L-ornithine aldehydo-D-ribose D-sorbitol D-glucoside GTP kinase: adk ATP hydroxymyristoyl- 2-iminobutanoate 3-phenylpropionate a pyrimidine base deoxyribonucleoside kinase: ndk guanine exporter: valine L-arginine degradation III D-ribofuranose a (3R)-3- in 16S rRNA in 23S rRNA in tRNA pentakisphosphate dGDP lipid A disaccharide citrate hydro-lyase (cis- an N-acyl-(S-diacyl- an [HPr protein]- two adjacent maltohexaose in 16S rRNA reductase: dGDP dADP reductase: [acyl-carrier 5-aminopentanal transaminase: ilvE 2-iminopropanoate (arginine decarboxylase/ dioxygenase: hcaF 3-(3-hydroxyphenyl) a [protein]-S- D-glucopyranose hydroxydocosanoyl-[acp] kinase: ndk phosphoribosyltransferase: hpt (E. coli) fumarase C: fumC aconitate-forming): acnA yddG cinnamate a 1-lysophosphatidylethanolamine sn-glyceryl)-L- 2-protocatechuoylphloroglucinolcarboxylate CO π pyruvate [DNA] menadione H O glycolaldehyde trimethylamine nrdD kinase: ndk kinase: ndk nrdD GMP guanine protein] hcaE hcaC hcaD propanoate (3,4-dihydroxyphenyl) N -phospho- 2 thymidines in DNA dATP stearate biosynthesis agmatinase pathway) dioxygenase: cysteinyl-[lipoprotein] methyl-L-cysteine dehydratase: fabZ tetraacyldisaccharide [+ 5 isozymes] (2S, 3S)-3- 3-methyl-2-oxobutanoate acetate L-histidine II (bacteria and plants) fatty acid elongation -- saturated 5-aminopentanal 3-(5,6-dihydroxycyclohexa- hcaF hcaE dGTP 4'-kinase: lpxK fumarate cis-aconitate methylaspartate arg L-glutamine 3-(3- 3-hydroxyacyl- dehydrogenase: patD 2-oxobutanoate 1,3-dien-1-yl)propanoate hcaC hcaD 3-hydroxycinnamate YhjX degradation II hydroxyphenyl) 6 dGTP dATP [acp] D-threo-isocitrate putative arginine α-D-glucopyranosyl- an oxidized 6 (S)-3-hydroxy-(9Z) an N -L- a [lipoyl-carrier an N-terminal L- 2069 γ D-mannose a palmitoyl-[acp] lipid IV (E. coli) glyoxylate a [prolipoprotein]- β + an N -(1-hydroxy-2- a 23S rRNA a guanine -glutamyl- A an acetoacetyl-[acp] GDP- -L-fucose glutathione maltopentaose 37 (R)-lipoate 4-hydroxy- 2-keto-L-gulonate methylglyoxal hydro-lyase: acnB 5-aminopentanoate probable pyruvate pyruvate decarboxylase, 2,3-dihydroxy-2,3- propanoate 2-hydroxy-5- a phosphatidylglycerol H NAD a dodecanoyl-[acp] α-Kdo-(2->4)-α-Kdo- threonylcarbamoyladenine 1911/1915/1917 alanyl-[S18 protein trans-aconitate (S)-ureidoglycine 2-oxoglutaramate cis-vaccenoyl-CoA allantoate a quinone DHAP L-tartrate galactarate oxalyl-CoA ATP heme b dehydratase: fabA β-ketoacyl-ACP methylaspartate (2E)-3-(5,6- L-cysteine diphosphoundecaprenol 2 ferredoxin [iron- oxopropyl)-[protein]-L-lysine -hexadecenoyl-CoA protein]-L-lysine uridine in 23S rRNA L-putrescine 6-phosphate hydroxylase: L-threonine Carbohydrate Biosynthesis D-threo-isocitrate formate lyase activating biosynthetic: speA gln dihydrophenylpropionate dihydroxycyclohexa- carboxymethylmuconate sulfur] cluster (2->6)-lipid IV (E. coli) 3-hydroxyacyl-CoA in tRNA 23S rRNA of 30S ribosome] 7 sugar sugar 2-keto-L- glyoxalase: synthase: fabF ammonia- isobutanoyl-CoA A 6 6 ribosomal-protein- 23S rRNA m G2069 trans-aconitate 2- (S)-ureidoglycine acyl-CoA allantoate FMN dependent L-tartrate galactarate oxalyl-CoA adenylate heme d 5-aminovalerate tRNA m t A37 1911/ γ 2-oxoglutaramate a (2E)-tetradec-2-enoyl-[acp] hydro-lyase (cis- lyase: Z0892 enzyme 2: pflC arginine L-glutamate:NADP+ dehydrogenase: hcaB mhpA 1,3-dien-1-yl) 3-hydroxy- semialdehyde dehydrogenase: fadB pseudouridine -glutamylputrescine phosphatase: phosphatase: gulonate hchA [+ 4 isozymes] aminotransferase: puuE fucosyltransferase: γ putative lipoate- S18-alanine N- methyltransferase: methyltransferase: 4-hydroxythreonine aminohydrolase: dehydrogenase: amidohydrolase: NADH:quinone dehydrogenase: dehydratase: decarboxylase: cyclase: synthase: phosphatidylglycerol--prolipoprotein glutathione-specific - protein deglycase: yajL maltopentaose methyltransferase: 1915/1917 oxidase: puuB amidase: yafV reductase: gluconeogenesis I a 3-oxooctadecanoyl-[acp] aconitate-forming): acnA [+ 3 isozymes] decarboxylase, oxidoreductase prop-2-enoate trans- wcaI hydrogenase 3-hydroxyacyl-CoA acetyltransferase: rlmL tam kinase: thrB allE fadE allC reductase,: azoR ybiV dmlA garD ybiV oxc glyoxalase cyaA katE trehalose biosynthesis II enterobacterial common antigen biosynthesis UDP-N-acetyl-D- myristoyl-[acyl- mesaconate 5-aminovalerate lauroyl glutamylcyclotransferase: glucosidase: malZ trmO protein ligase 7 γ NlpI sucrose biosynthesis I (from photosynthesis) isocitrate lyase: aceA degradative: adiA (transaminating) cinnamate diacylglyceryl transferase: lgt 4 subunit: hyfG [+ 2 isozymes] dehydrogenase: fadJ an N 6 -methyl- synthase: rluD rimI an N - 4-( -L- (E)-3- [+ 2 isozymes] [+ 2 isozymes] ghrB III: yhbO 2,3-DHP acyltransferase: lpxL chaC A: Z5988 1911/ an N-terminal N-acetyl- 4-phosphooxy- (2E,11Z)- 2-hydroxy-3- 5-dehydro-4- glucosamine biosynthesis I carrier-protein] succinate D-threo-isocitrate transaminase: gabT propanoyl-CoA agmatine a pseudouridine methylguanine 2069 (methoxycarbonyl) (S)-ureidoglycolate 2-oxoglutarate (S)-ureidoglycine a semiquinone formyl-CoA cyclic-AMP heme d 3-oxoacyl-[ACP] : gltD gltB cis-3-(2- hydroxylase: 3-oxo-(9Z)-hexadecenoyl-CoA threonylcarbamoyladenosine L-alanyl-[S18 protein glutamylamino) octadecenoyl-CoA dihydroxyacetone oxosuccinate deoxy-D-glucarate D-mannose L-idonate (R)-lactate (S)-malate D-glucopyranose α-D-glucopyranose reductase: fabI a 3-oxoacyl-[acp] L-tryptophan 5-carboxymethyl-2- 1915/1917 in 23S rRNA L-threonine 3-phospho- ADP-α-D-glucose reductase: fabG isocitrate glutarate semialdehyde methylacrylyl-CoA glu 2,3-dihydroxyphenylpropionate carboxyethenyl) mhpA α-L-fucosyl-(1->3)- 37 in tRNA in 23S rRNA butanal pent-2-enedioate 6-phosphate 1-phosphate D-glucopyranose phosphate degradation II hydroxymuconate a [prolipoprotein]- a reduced of 30S ribosome] D-glycerate dehydrogenase: icd agmatinase: β GDP + α α D-glucopyranose maltotetraose a [lipoyl-carrier protein]- 6-phosphate trehalose biosynthesis III putative beta- succinyl-CoA (via pyruvate) 1,2-dioxygenase: mhpB -3,5- S-1,2-diacyl-sn- sn-glycerol 1-phosphate -D-glucopyranosyl- NADH H -Kdo-(2->4)- -Kdo-(2-> 5-oxo-L-proline L-cysteinylglycine (R)-lactate a [protein]-L-lysine glucose-6- a myristoyl-[acp] propionyltransferase: pta speB ferredoxin [iron- 6 phosphoglycerate dTDP-glucose glutarate-semialdehyde cyclohexadiene- diphosphoundecaprenol 6)-(lauroyl)-lipid IV (E. coli) N -[(R)-lipoyl]-L-lysine ketoacyl-ACP putative beta- synthetase: sucD sucC (S)-citramalate glyceryl-L-cysteine sulfur] cluster A phosphate dehydrogenase: sad (2Z,4E)-2-hydroxy-6- kinase: pgk pyrophosphorylase: α-D-glucose reductase: Z4865 ketoacyl-ACP trp 1,2-diol TorS UDP-N-acetyl- isomerase: pgi α β-ketoacyl-ACP propanoyl phosphate putrescine oxonona-2,4-diene-1,9-dioate α rffH 6-phosphate GDP- -D-glucose reductase: Z4865 glutarate-semialdehyde (S)-3-hydroxy- dehydrogenase: (3E,5R)-5-carboxy-2- malate α,α-trehalose -D-glucosamine F6P synthase: fabF a (3R)-3- tryptophanase: an N-terminal L- dehydrogenase: gabD 2-hydroxy-6- hcaB N-acetyl-D- UDP-N-acetyl- core oligosaccharide-lipid a 1-palmitoyl-2-acyl- glucosyl-(heptosyl) - UDP-α-D-glucuronate 6-(glutathion-S-yl)-2- a dimer of adjacent 2'- a [protein]-N 6 - (S)-3-hydroxy-(7Z) a [DNA]- an insertion sequence a uridine 2604 (Z)-3- D-glyceraldehyde D-glucose 6- 2-phospho- malate 13-DPG UDP-N- dTDP-α-D-glucose [+ 4 isozymes] 3-oxoacyl-[acyl- isobutanoyl-CoA propionate kinase: ackA tnaA catechol oxohept-3-enedioate 3 glutathione hν ammonium NAD(P) + H O a phosphatidylglycerol a [protein]-L-histidine propan-1-ol N-ethylmaleimide cyclic-AMP hydroxypyruvate methylglyoxal butanoyl-CoA 8-oxo-dGTP NMN D-xylose nitric oxide Fe 2+ dehydrogenase: 6-phosphate hydroxyoctadecanoyl-[acp] ketonona-2,4- α-D-glucosamine DMAPP nucleotide- 2 alanyl-[S5 protein malate dehydrogenase, putative beta- succinyl-CoA 2-oxoglutarate 2-aminoprop- glucosamine A (E. coli K-12 core type) phosphatidylglycerol Kdo -lipid A-phosphate methylhydroquinone deoxycytidines in DNA monoubiquitinyl-L-lysine -hexadecenoyl-CoA element IS30 in 23S rRNA peroxyaminoacrylate 3-phosphate phosphate D-glycerate mdh acetylglucosamine L-glutamine--D- carrier-protein] glutarate propionate kinase: tdcD degradation to 2 3-hydroxyacyl-CoA of 30S ribosome] putative protein-histidine alcohol aldehyde trehalose-6- di-trans,octa-cis- UDP-N-acetyl- dTDP-glucose 4,6- (3R)-3- ketoacyl-ACP 2-enoate dienedioate dimethylallyl diphosphate 3'-phosphate lipid ribosomal-protein- 23S rRNA aminoacrylate cAMP sugar acyl-CoA 8-oxo-dGTP sugar NMN nitric oxide dehydrogenase: NAD-requiring: glyceraldehyde- 2-epimerase: wecB fructose-6- a 3-oxohexadecanoyl-[acp] reductase: fabG pyruvate β-ketoadipate 3'-phosphomonoesterase: N-ethylmaleimide hydroxypyruvate methylglyoxal reductase: ferroxidase: [+ 23 isozymes] undecaprenyl phosphate hydrolase: mhpC dehydrogenase: fadB pyrophosphatase: nudF transposase pros-kinase: cpxA dehydrogenase: adhP 2604 maeB maeA 3-phosphate phosphate α-D-glucosamine dehydratase: rffG hydroxyacyl-[acyl- phosphatidylglycerol synthase: Z4866 S-glutathionyl- nfo kinase: S5-alanine N- pseudouridine peracid phosphodiesterase: phosphatase: dehydrogenase: diphosphatase: phosphatase: amidohydrolase: dioxygenase: UDP-N-acetyl-α- phosphate α,α-trehalose propanoate N-acetylglucosaminyltransferase: (partial): Z2561 reductase: nemA isomerase: hyi reductase: ydjG yahK bfr YohD phosphatase: dTDP-4-dehydro-6- carrier protein] biosynthesis II (non-plastidic) [+ 4 isozymes] (2Z)-2-hydroxypenta- catechol (4Z)-2-oxohept- deoxyribodipyrimidine deubiquitinase: 3-hydroxyacyl-CoA dimethylallyl diphosphate nitrite yegS acetyltransferase: protein-histidine alcohol synthase: rluF reductase: rutC cpdA ybiV fadE mutT ybiV pncC hmp [+ 22 isozymes] dehydrogenase: D-mannosamine aminotransferase: 6-phosphate 3-oxoacyl-[ACP] a 2,3,4-saturated a (3R)-3-hydroxyacyl- (S)-3-hydroxy-isobutanoate L-alanine pgaD pgaC hydroquinone 3'-phosphomonoesterase: UDP-N-acetylglucosamine--undecaprenyl- α photolyase: phr elaD dehydrogenase: fadJ reductase: nirC [+ 13 isozymes] pros-kinase: cusS dehydrogenase: adhE 2604 [+ 3 isozymes] gapA otsB deoxy- -D-glucopyranose dehydratase: fabZ 2,4-dienoate 4-enedioate pyrophosphatase: nudJ an N-terminal N-acetyl-rimJ π a pseudouridine (Z)-3- tartronate [+ 2 isozymes] [+ 2 isozymes] glmS reductase: fabG fatty acyl-[acp] [acyl-carrier protein] 2-oxoglutarate degradation I reductase: yqjG xthA an insertion sequence IS30 a [protein]-N - N-ethylsuccinimide AMP hydroxyacetone crotonyl-CoA 8-oxo-dGMP NaMN nitrate Fe 3+ D-glycerate phosphate N- UDP-N-acetyl-D- trehalose-6- DHAP 3-oxo-(7Z)-hexadecenoyl-CoA a [DNA]-3'- a phosphatidylglycerophosphate 1-propanal xylitol α α dTDP-4-dehydro- 3-hydroxyacyl- (S)-2-hydroxyglutarate 2-iminopropanoate 2-oxopent- prenyl phosphate L-alanyl-[S5 protein in 23S rRNA aminoacrylate semialdehyde D-glyceraldehyde D-glucose glyceraldehyde- , -trehalose mannosamine D-glucosamine phosphate putative beta- 3-hydroxyacyl- dehydrogenase: a reduced β hydroxyl with integrated transposon phospho-L-histidine acetylglucosaminephosphotransferase: rfe 6-deoxy- [acp] glycerol-3-phosphate 4-enoate cis,cis-muconate 2,3-dihydroxy- poly- -1,6- UDP a hepta-acylated core glucosyl-(heptosyl) - of 30S ribosome] oxaloacetate 3-phosphate dehydrogenase: 6-phosphate phosphatase: ketoacyl-ACP [acp] lpd sucB sucA acetyl-CoA ferredoxin [iron- ala a 1-lysophosphatidylglycerol 3 UDP two adjacent 2'- a [ubiquitin] C- D-glucose dehydratase: fabA dehydrogenase: gpsA L-2-hydroxyglutarate L-citrulline degradation hydratase: mhpD trans-cinnamate N-acetyl-D- oligosaccharide lipid glucosyluronate-Kdo toluquinol GSSG a [protein]-L-lysine nitrite dehydrogenase: N-acetyl-α-D-glucosaminyl- wecC phosphoglucosamine otsB reductase: Z4865 dehydratase: fabA sulfur] cluster (S)-methylmalonate- alanine (4S)-4-hydroxy-2- 2 deoxycytidines in DNA terminal glycine CvpA transaminase: sn-glycerol 3-phosphate dehydrogenase: lhgD (S)-4-hydroxy- 2,3- glucosamine A (E. coli K-12 type) -lipid A-phosphate pyruvate gapC diphospho-ditrans,octacis UDP-N-acetyl-α-D- mutase: glmM a (3R)-3- (3R)-3- hydrogenase- semialdehyde racemase: alr oxoheptanedioate phosphoenol wecE α,α-trehalose a (2E)-octadec-2-enoyl-[acp] 2-oxopentanoate dihydroxycinnamate D-glyceraldehyde -undecaprenol mannosaminuronate α hydroxyhexadecanoyl-[acp] hydroxyacyl-[acyl- 4: hyfC hyfB L-citrulline pyruvate [+ 4 isozymes] pyruvate DHAP dTDP-4-amino-4,6- -D-glucosamine acyl-CoA:sn-glycerol- 2-oxoglutarate dioxygenase: mhpB 3 β α γ D-ala 4-hydroxy-2- core oligosaccharide-lipid core oligosaccharide-lipid an N - ADP-L-glycero- - heptosyl- (S)-3-hydroxy-(5Z) (2S)-2-hydroxy- -D-ribose-1- a 2'- 4-( -L- 955/2504/ 2605 55 a (1->4)- 3-phosphate enoyl-[acyl- 3-phosphate 1-O- carrier protein] hyfG hyfI ornithine (+)-muconolactone a 1-palmitoyl-2-acyl- a 1-palmitoyl-2-acyl- kojibiose a nucleoside uridine S-(hydroxymethyl) uridine a uridine α-ribazole a double 3-phospho- carboxykinase phosphoenolpyruvate UDP-N-acetyl-D- dideoxy-α-D-galactose 1-phosphate (3R)-3- acetoacetyl-CoA oxovalerate (2Z,4E,7E)-2- 2-oxoglutarate methylcytosine D-manno-heptose Kdo -lipid A a (3R)-3-hydroxydocosanoyl-[acp] 3,4-dioxopentyl methylphosphonate- deoxyribonucleoside glutamylamino) thiosulfate spermidine (S)-ureidoglycolate oleoyl-CoA an aldehyde putrescine pyrazinamide 8-oxo-dGDP L-tartrate riboflavin α dehydratase: fabZ A (E. coli K-12 core type) A (E. coli K-12 core type) 2 -tetradecenoyl-CoA 2580 in 23S rRNA glutathione in 23S rRNA in tRNA stranded DNA -D-glucan D-glycerate carrier-protein] acyltransferase: plsB hyfH hyfF carbamoyltransferase: hydroxy-6-oxonona- phosphatidylethanolamine phosphatidylserine triphosphate 5'-phosphate (ATP): pck synthetase: ppsA mannosaminuronic dTDP-fucosamine glucosamine- hydroxypalmitoyl- aldolase: mhpE in DNA 3-hydroxyacyl-CoA phosphate 5-triphosphate 5'-monophosphate butanal 23S rRNA putative thiosulfate S-(hydroxymethyl) 8 putative 3-hydroxyacyl-CoA hyfE hyfD hyfA argI D-alanine:quinone succinate semialdehyde (3R)-3-hydroxyacyl- α-D-ribose-1- 23S rRNA spermidine N - ureidoglycolate acyl-CoA tRNA aldehyde putrescine 8-oxo-dGDP α L(+)-tartrate riboflavin α reductase: fabI 2,4,7-triene-1,9-dioate (4S)-4-hydroxy-5- nucleoside triphosphate deoxyribonucleoside γ-glutamyl-γ- 955/ -ribazole-5'-P -amylase: acetyltransferase: 1-phosphate [acyl-carrier a 2,3,4-saturated enoyl-[acyl- a trans-2-enoyl- (S)-3-amino-2- carbamoyl dehydrogenase: fadJ pseudouridine sulfurtransferase: sseA 2605 55 pyrazinamidase: gyrase: CadC aldolase: acid transferase: rffM a 2-lysophosphatidate dehydrogenase: hydrogencarbonate oxidoreductase ADP-heptose--LPS kojibiose [acyl-carrier protein] methylphosphonate- glutathione pseudouridine acetyltransferase: dehydrogenase: dehydrogenase: pseudouridine dehydrogenase: aminotransferase: diphosphatase: dehydratase: reductase: acetyltransferase: protein] carrier-protein] phosphate acetaldehyde phosphonooxypentane- pyrophosphohydrolase: 5'-monophosphate aminobutyraldehyde pncA phosphatase: gyrB gyrA amyA Z5687 wecD fatty acyl-[acp] [acyl-carrier protein] H methylpropanoate succinate N3- dehydratase: fabZ 3-hydroxyacyl-CoA 2504/2580 thiosulfate dehydrogenase: phosphoenolpyruvate a stearoyl-[acp] fadJ 2 (deaminating) (4,5-dihydro- 2-hydroxy-6- heptosyltransferase: phosphorylase: mazG 5-triphosphate synthase: rluB speG allD fadE synthase: truB paoB paoA paoC patA mutT cobC ttdB ttdA fre β-D-ManNAcA-(1->4)-α-D- dTDP-4-acetamido-4,6- glmU dehydratase: fabZ acyl-CoA:1-acyl-sn- reductase: fabI methylcytosine 2,3-dione isomerase: lsrG phosphatase: yfbR dehydrogenase: puuC synthase: rluC frmA a (1->4)- [+ 3 isozymes] putative : dadA acetaldehyde 5-oxofuran- semialdehyde waaF ycjT 3-hydroxyacyl-[acp] dehydrogenase: fadB 3-hydroxy-2,4- α-D-ribose-1-diphosphatase: phnM 4-(γ-L- sulfurtransferase: glpE a pseudouridine 2605 N 8 - N-carbamoyl- (2E,9Z)- a pseudouridine 55 pyrazine-2- a negatively GlcNAc-PP-undecaprenol α N-acetyl-α-D- 3-hydroxyacyl-CoA oxononatrienedioate a nucleoside 5'- a 2'- a pseudouridine 955/ a carboxylate 1-pyrroline 8-oxo-dGMP α oxaloacetate reduced riboflavin α D-glycerate dideoxy- -D-galactose 3-hydroxyacyl- glycerol-3-phosphate 2- kinase: L-threonine dehydrogenase demethylase: alkB 3-oxo-(5Z)-tetradecenoyl-CoA glutamylamino) sulfite S-formylglutathione -ribazole -D-glucan enolase: eno dehydrogenase: dehydrogenase 2-yl)-acetate hydrolase: mhpC dehydratase: fabA dioxopentyl monophosphate methylphosphonate deoxyribonucleoside in 23S rRNA acetylspermidine 2-oxoglycine octadecenoyl-CoA in tRNA carboxylate supercoiled DNA β glucosamine [acp] O-acyltransferase: plsC degradation II pyruvate + 2504/2580 in 23S rRNA -D-fructose 1,6- 2,3,4-saturated yahI (acetylating) (NADP ): gabD a hepta-acylated core a hepta-acylated core (heptosyl) - β phosphate 5-phosphate butanoate TDP-N-acetylfucosamine:lipid II 1-phosphate fadB 2 -D-glucopyranose a (2E)-docos-2-enoyl-[acp] bisphosphate dehydratase: fabA a 1-lysophosphatidylethanolamine oligosaccharide lipid a 1-lysophosphatidylserine oligosaccharide lipid ADP D-glucopyranose YghB N-acetylfucosaminyltransferase: a phosphatidate fatty acyl- (S)-3- [+ 2 isozymes] : mhpF (2Z)-2-hydroxypenta- a cytosine in DNA formaldehyde succinate Kdo -lipid A 1-phosphate 2-phospho-D-glycerate ADP-L-glycero-β-D-manno N-acetylglucosamine- fumarate succinate 2 fructose-1,6- stearate [acp]:NAD+ hydroxybutanoyl- L-proline thr [+ 2 isozymes] 2,4-dienoate A (E. coli K-12 type) A (E. coli K-12 type) wecF 1-phosphate a (2E)-hexadec-2-enoyl-[acp] carbamate threonine bisphosphatase: fbp -heptose biosynthesis putative phosphatidate oxidoreductase: CoA degradation I 3-oxoadipate phosphoglyceromutase uridyltransferase: short chain dehydrogenase: [+ 3 isozymes] (enterobacterial common D-sedoheptulose cytidiltransferase: Z2318 fabI acetyl-CoA β β α 1 2: gpmB glmU palmitoyl-[acyl- enoyl-CoA ADP-L-glycero- - glucosyl-(heptosyl) - ADP-L-glycero- - -D-Kdo-(2->4) an N - (S)-3-hydroxy-(7Z) a 5-(aminomethyl)-2- (Z)-3- a cytidine 34 in S-(hydroxymethyl) a uracil 747 a uridine 516 a uridine 65 3-β-hydroxyandrost- 3-methyl-2- 2,3- acyl-CoA tdh 2 lipid IV (E. coli) 1,2-dipalmitoyl- isoprimeverose long chain 2,3- D-glucopyranose L-glutamate α 2-oxoglutarate a 2-lysophosphatidylethanolamine A c-di-GMP spermidine 1,3-propanediol acetaldehyde DHAP an aryl sulfate D-tartrate (S)-NADHX glutathione antigen monomer)- 7-phosphate carrier-protein] CDP-diglyceride hydratase: pro D-serine D-manno-heptose Kdo -lipid A-phosphate D-manno-heptose - -D-Kdo-(2->6) ethyladenine -tetradecenoyl-CoA 34 DMAPP met 2,3-bisphosphoglycerate- D-sedoheptulose UDP-N-acetyl- synthetase: fadK 2 phosphatidylserine polyphosphate thiouridine in tRNA ureidoacrylate [elongator tRNA ] glutathione in 23S rRNA in 16S rRNA in tRNA 5-en-17-one 3-sulfate oxobutanoate dihydroxybenzoate F6P undecaprenyl diphosphate synthetase: cdsA glycine cleavage L-threonine degradation IX (via diaminopropanoate PhoQ independent α-D-glucosamine reductase: fabI fadJ degradation -lipid A (E. coli) in DNA 3-hydroxyacyl-CoA c-di-GMP 5-methylaminomethyl- peroxyureidoacrylate/ tRNA Met cytidine S-(hydroxymethyl) 23S rRNA m 5 U747 spermidine N 1 - 1,3-propanediol 16S rRNA tRNA acetaldehyde putative arylsulfatase: D-tartrate (S)-NADHX colanic acid building blocks biosynthesis 7-phosphate fatty acyl-CoA dehydrogenase: 4-aminobutanoate) 2,3- dimethylallyl- arylsulfatase: methylglyoxal lipid III enoyl-CoA CO dehydrogenase: fadB phosphodiesterase: 2-thiouridine-forming glutathione 516 65 phosphoglycerate glucose-6- isomerase: gmhA a CDP-diacylglycerol 2 lipopolysaccharide core diphosphate:NAD(P)+ ureidoacrylate acetyltransferase: methyltransferase: acetyltransferase: dehydrogenase: pseudouridine pseudouridine dehydrogenase: decarboxylase: aslA dehydratase: dehydratase: D-glycero-D- synthetase: fadD a [glycine- (S)-1-pyrroline- yiaY ADP-heptose:Kdo -lipid 1-ethyladenine isoprimeverose exopolyphosphatase: ppx pdeR methyltransferase: diaminopropionate dehydrogenase: aslA synthase: mgsA mutase: gpmM flippase: wzxE a palmitoyl-[acp] fatty acid biosynthesis hydratase: D-serine L-2-amino-3- 2 3-hydroxyacyl-CoA amidohydrolase: rutB tmcA rlmC speG yqhD synthase: rsuA synthase: truC aldB Z4047 [+ 5 isozymes] fumB nnr phosphate CMP-3-deoxy-D-manno- manno-heptose cleavage complex 5-carboxylate glu heptosyltransferase: A heptosyltransferase: α-xylosidase: yicI ammonia-lyase: ygeX oxidoreductase: ispH D-glucopyranose 6-phosphate (enterobacterial common CDP-diacylglycerol--glycerol- initiation II fadB oxobutanoate demethylase: dehydrogenase: fadJ [+ 4 isozymes] mnmC (E)-4-hydroxy-3- 4 34 frmA 747 1 65 isomerase: stearoyl-CoA H protein] N 6 -[(R D-serine glutamate waaQ a 5-[(methylamino) (Z)-3- an N -acetylcytidine a 5-methyluracil N - a 16S rRNA a pseudouridine 3-β-hydroxyandrost- keto-D-fructose 3-phospho-D-glycerate octulosonate biosynthesis 7-phosphate glycine waaC alkB long chain 5'-phosphoguanylyl(3'->5') 3-hydroxypropanal acetate methylglyoxal isobutanal a phenol oxaloacetate NADH 2-carboxymuconate GSSG pgi antigen monomer)- heptose 7- 3-phosphate 3- 3-oxo-(7Z)-tetradecenoyl-CoA methyl]-2- pyruvate methylbut-2-en- aminoacrylate in [elongator tRNA met ] S-formylglutathione in 23S rRNA acetylspermidine pseudouridine 516 in tRNA 5-en-17-one crotonyl-CoA )-lipoyl]-L-lysine decarboxylase: ammonia- 2-amino-3- decarboxylase polyphosphate guanosine undecaprenyl diphosphate phosphatidyltransferase: acetyl-CoA 34 1-yl diphosphate glucose-6-phosphate phosphoglucomutase: D-ribulose 5-phosphate phosphate lyase: ketobutyrate A: gadA glucosyl-(heptosyl) - heptosyl- 2-palmitoyl-sn-glycero- α thiouridine in tRNA YggT phosphoglycerate D-glucopyranose H-Gcv-protein- gcvP L-glutamine 3 sn-glycero-3- lipid IV D-glucopyranose -D-xylopyranose pgsA acetyl-CoA:ACP ADP ADP a carboxylate B 6-phosphate isomerase: pgi pgm D-arabinose kinase: hldE dsdA CoA ligase: kbl Fatty Acid and Lipid Degradation Kdo -lipid A-phosphate Kdo -lipid A acetaldehyde an adenine in DNA succinate 3-phosphoserine kinase: pgk β (dihydrolipoyl) L-glutamate-5- degradation I 2-aminoprop- glutamate 2 2 phosphoethanolamine 5-phosphate D-glycero- -D- palmitate transacylase: fabH phosphoglucomutase: a phosphatidylglycerophosphate lysine:NAD+ semialdehyde 2-enoate decarboxylase isomerase: kdsD manno-heptose an acetyl-[acp] gly 13-DPG F6P α-D-glucopyranose 1-phosphate short chain oxidoreductase: lpd γ B: gadB fatty acid β-oxidation I (generic) pgm 1,7-bisphosphate a [glycine- L-glutamate - gln 3 phospholipases 32 α α α 1915 1939 38- 13 D-arabinose acyl-CoA butanoyl-CoA a [glycine-cleavage 4-aminobutanoate a 2-methylthiocytosine an N - -D-Gal-(1->3)- -L-Fuc- -L-fucosyl-(1->3)- (S)-3-hydroxy-(9Z) a pseudouridine a uracil a double 2,6- a uridine (7Z)- an aliphatic a uridine a 1,2-diacyl- an aliphatic glycerol 1- uridine 2'3'-cyclic cytidine α-D- D-glycero- phosphatidylglycerophosphatase: acetoacetyl-[acp] cleavage complex semialdehyde glutaminase: cellulose a phosphatidylethanolamine 2-oxoglutarate 2-oxoglutarate a 1-lysophosphatidylethanolamine uroporphyrinogen-III 3-oxopropanoate a cytosine in DNA glycolaldehyde a quinone 8-oxo-GDP (S)-NADPHX an mRNA mannose-6- UTP--glucose- 5-phosphate synthetase: fadK complex H protein] N 6 - a (3Z)-alk-3- methylcytosine (1->4)-2/3-O-Ac-α-L-Fuc- β-D-glucopyranosyl- -octadecenoyl-CoA 13-DPG IPP α ω α ω monophosphate 2',3'-cyclic IgaA glyceraldehyde- β pgpB 6 glsB in tRNA in 23S rRNA in 23S rRNA stranded DNA dimethoxyphenol 40 in tRNA hexadecenoyl-CoA , -diamine in tRNA sn-glycerol , -diamine phosphate glucopyranose phosphate -D-manno- synthase: fabF H protein] N - dehydrogenase: α 1-phosphate isomerase: gutQ aminomethyldihydrolipoyl- enoyl-CoA a 1-phosphatidyl-1D-myo- in RNA (1->3)- -D-Glc-PP-Undgalactosyl-(1->3)-L-fucosyl- diphosphoundecaprenol 3-hydroxyacyl-CoA uroporphyrinogen-III C- malonic semialdehyde 23S rRNA m 3 Ψ1915 23S rRNA m 5 U1939 recombination- DNA-cytosine tRNA diamine N- tRNA quinone diacylglycerol diamine 8-oxo-GDP (S)-NADPHX monophosphate 3-phosphate 1-phosphate aldehydo-D-arabinose heptose-1,7- fatty acyl-CoA phosphatidylglycerophosphatase: dihydrolipoyl- putA [+ 7 isozymes] 2-iminopropanoate a 1,2-diacyl-sn-glycerol α-L-fucosyl-(1->3)- isopentenyl- acyl-CoA glycolaldehyde glycerol-3- isomerase: manA uridylyltransferase: [+ 3 isozymes] inositol 4,5-bisphosphate dehydrogenase: fadJ methyltransferase: cysG reductase: ydfG phosphoglyceromutase 38- 13 L-lysine ∆ 3 2 (1->4)-O-acetyl-L-fucosyl- methyltransferase: methyltransferase: promoting methyltransferase: pseudouridine acetyltransferase: pseudouridine oxidoreductase: kinase: dgkA transaminase: diphosphatase: dehydratase: dehydrogenase: 5-phosphate bisphosphate 7- synthetase: fadD pgpA L-lysine glu -cis-∆ celulose β-D-glucopyranosyl- diphosphate:NAD(P)+ dehydrogenase: reductase: yqhD phosphatase: UTP--glucose- galU 2-methylthiocytosine N3- β 3-hydroxyacyl-CoA uroporphyrinogen malonic semialdehyde 2: gpmB gapA D-mannopyranose 6-phosphate phosphatase: butanoyl glu -trans- phosphoethanolamine (1->3)- -D-glucopyranosyl- diphosphoundecaprenol rlmH oxidoreductase: ispH rlmD nuclease: rpnA dcm 40 synthase: truA fadE speG synthase: truD qor [+ 2 isozymes] patA mutT nnr hxpA 1-phosphate an acetoacetyl-[acp] dethiomethylase: alkB methylcytosine an N 3 - α palmitoyl-CoA a phosphatidylglycerol diphosphoundecaprenol dehydrogenase: fadB III methylase: hemX reductase: rutE (E)-4-hydroxy-3- a 5-methyluracil 1939 a 5-methylcytosine 3,3',5,5'- a pseudouridine 38- (2E,7Z)- an aliphatic N- a pseudouridine 13 an aliphatic ω- 3'-UMP glyceraldehyde- UDP- -D-glucose gmhB phosphate enoyl-CoA transferase: bcsG O-acetyltransferase: wcaF 1915 2,3-diphospho- ethylene glycol GTP Ffh GTP uridylyltransferase: a phosphatidylcholine a phosphatidate demethylase: alkB 2/3-O-Ac-α-L-Fuc- 3-hydroxypropanoate methylpseudouridine methylbut-2-en- a 5'-phosphooligonucleotide a semiquinone a phosphatidate 8-oxo-GMP NADPH glycerol an mRNA fragment 3'-cmp phosphomannomutase: D-glycero-β-D- 2-O-Ac-α-D-Gal-(1->3)-acetyltransferase:α- wcaB 3-oxo-(9Z)-octadecenoyl-CoA precorrin-2 D-glycerate in 23S rRNA in DNA tetramethoxydiphenoquinone 40 in tRNA hexadecenoyl-CoA acetyl-diamine in tRNA aminoaldehyde triose- 3-phosphate galU aminomethyltransferase: isomerase: (1->3)-α-D-Glc-PP-Und in 23S rRNA cpsG D-arabinofuranose manno-heptose pyruvate 1-yl diphosphate phosphate dehydrogenase: gcvT fadB a 1,2-diacyl- phosphoethanolamine a 2-thiocytosine 32 sn-glycero-3- L-Fuc-(1->4)-2/3-O-Ac-α-L- putative UDP- UDP-glucose 6- glycogen biosynthesis I (from ADP-D-Glucose) formaldehyde succinate isomerase: UDP-α-D-glucose phosphomannomutase: 5-phosphate 1-phosphate cellulose formaldehyde a cytosine in RNA succinate a carboxylate Fuc-(1->3)-α-D-Glc-PP-Und gapC galactose 4- dehydrogenase: ugd putative dodecenoyl- sn-glycerol in tRNA phosphoethanolamine putative tpiA cpsG 3-deoxy-D-manno heptose 1-phosphate a phosphatidylcholine a 2-lysophosphatidylcholine D-glyceraldehyde epimerase: Z3206 D-glucopyranose butanoate aminomethyltransferase: CoA D- DHAP -octulosonate adenyltransferase: citrate citrate citrate 3-phosphate α UDP-α-D-glucuronate 6-phosphate Z1548 isomerase: -D-mannose 1-phosphate UDP-glucose 4- 8-phosphate permease hldE 3-hydroxyacyl- (heptosyl) - (S)-3-hydroxy-(5Z) D-gluconate 32 D-sedoheptulose 2'-deoxyuridine 3'- fadJ 2 α a single an N-hydroxy- a uridine 7-carboxy-7- D-altropyranose epimerase: galE synthase: kdsA ADP-D-glycero-β- phosphoglucomutase: glycerophosphoglycerol a 1-lysophosphatidylethanolamine a double stranded DNA a phosphatidylethanolamine Kdo -lipid A UDP- -D-glucose D-glucopyranose maltopentaose glutathione 2-hydroxy-dATP 4-guanidinobutyramide 4-nitrobenzaldehyde 5-hydroxy-CTP dihydrocurcumin 2-phosphoglycolate putrescine palmitoleoyl-CoA L-quinate ethylene glycol pyridoxine 8-oxo-GTP D-glucosamine nigerose (R)-NADPHX monophosphate GDP-D- trehalose mannose-1-phosphate CoA a phosphatidylcholine a 1-lysophosphatidylcholine 2 stranded DNA -dodecenoyl-CoA arylamine 6-phosphate in tRNA 7-phosphate deazaguanine D-manno-heptose pgm fatty a (2E)-2- succinate succinate perosamine guanylyltransferase: epimerase: single stranded 3-hydroxyacyl-CoA S-adenosyl-L- oxidized nucleoside putative synthetase/ 4-nitrobenzaldehyde putative N- 5-hydroxy-CTP NADPH-dependent diamine N- acyl-CoA quinate tRNA sedoheptulose- 7-cyano-7- pyridoxine 4- 8-oxo-GTP- nigerose NADPHX biosynthesis V UDP-α-D-galactose KDO-8P α-D- acyl-CoA enoyl-CoA enoyl-CoA phosphoglycolate 6-phosphogluconate glycolaldehyde glucosamine CitT putative biosynthesis cpsB ADP-L-glycero-D- fadB lipopolysaccharide endodeoxyribonuclease: dehydrogenase: fadB methionine:glutathione triphosphate amidase: yjfC reductase: dkgB hydroxyarylamine O- diphosphohydrolase: dihydrocurcumin acetyltransferase: dehydrogenase: dehydrogenase: pseudouridine 32 7-phosphate deazaguanine dehydrogenase: diphosphatase: hydrolase: epimerase: glucopyranose synthetase: hydratase: amylomaltase: phosphatase: gph phosphatase: yieH reductase: fucO kinase: glk aldolase: GDP-α-D- a glycogen mannoheptose 6- 5' to 3' exonuclease: polA 3-hydroxyacyl-CoA pyrophosphohydrolase: putative synthetase/ acetyltransferase: kinase: pfkA citrate citrate α fadB 3-hydroxybutyryl- glucosyltransferase: recC recD recB methyltransferase: cheR [+ 4 isozymes] nudG reductase: curA speG fadE ydiB synthase: rluA synthase: queC pdxI mutT ygjK nnr F GDP- -D-mannose trehalose biosynthesis I 3-deoxy-D-manno 1-phosphate fadD a phosphatidylcholine a 1,2-diacyl-sn-glycerol malQ mannose epimerase: rfaD Aldehyde Degradation DNA exonuclease: recE dehydrogenase: fadJ nudG amidase: ygiC Z2250 32 D-sedoheptulose D-glucosamine 2'-deoxyuridine Z5687 sucrose 6 CoA a 2,3,4- waaG 4-nitrobenzyl D-gluconate (2E,9Z)- a pseudouridine glycolaldehyde D-glucopyranose keto-D-psicose GDP- -octulosonate ADP-L-glycero-β- glucose-1-phosphate short chain enoyl-CoA a 5'-phosphooligonucleotide S-methylglutathione an N- 5-hydroxy-CMP tetrahydrocurcumin glycolate N-acetylputrescine 3-dehydroquinate preQ pyridoxal 8-oxo-GMP (S)-NADPHX FtsN [+ 3 isozymes] -phosphate GDP-mannose 4,6- a 2,3,4-saturated epimerase: fadJ saturated (3R)-3- 3-oxo-(5Z)-dodecenoyl-CoA 2-hydroxy-dAMP 4-guanidinobutanoate alcohol hexadecenoyl-CoA in tRNA 1,7-bisphosphate 0 6-phosphate mannose 4,6- D-glucopyranose 8-phosphate adenylyltransferase: acyl-CoA hydratase: acetoxyarylamine a maltodextrin UDP-α-D-glucose D-manno-heptose methylglyoxal L-lactaldehyde fatty acid acyl-CoA hydroxyacyl-CoA dehydratase: dehydratase: gmd 6-phosphate phosphatase: glgC fadJ sn-glycero-3- glucosyl-(heptosyl) UDP maltose maltotetraose degradation III degradation (aerobic) L-lactaldehyde synthetase: dehydrogenase: a lysophosphatidylglycerol a 5'-phosphomononucleotide a single stranded DNA a 2-lysophosphatidylethanolamine a fatty acid gmd GDP-mannose 4,6- kdsC a 2,3,4- -Kdo -lipid A a (1->4)- degradation fadK fadE triacylglycerol phosphoethanolamine 2 2 dehydratase: gmd α ADP-α-D-glucose a 2,3,4-saturated β β GDP- trehalose-6- -D-glucan (anaerobic) saturated (3S)-3- fatty acid -oxidation degradation -D-fructose 1,6- sucrose α-Kdo methylglyoxal (S)-lactaldehyde fatty acyl CoA 3-hydroxyacyl-CoA mannose 4,6- α phosphate glycogen hydroxyacyl-CoA III (unsaturated, bisphosphate GDP-4-dehydro- -D-rhamnose methylglyoxal lactaldehyde α α α-D-ribose 1- 1407 967 35 5-fluorouridine 5'- a maltooligosyl- (S)-lactaldehyde dehydrogenase: a triacyl-sn -D-Kdo-(2->4)- -D- a 1-palmitoyl-2-acyl-sn- 3-(3,4-dihydroxyphenyl) a cytosine 2,3-dihydroxypropane a cytosine a double β (3R)-3,4- a uridine uracil uridine YbiO dehydratase: synthase: otsA 3-deoxy-manno synthase: dehydrogenase: odd number) a peptidoglycan a phosphatidylethanolamine D-glucopyranose maltohexaose 3-hydroxypropanal 11-deoxycorticosterone hydroquinone 4-aminobutanal tellurite spermine a -D-galactoside D-glyceraldehyde L-galactonate isobutanal estrone 3-sulfate an aldehyde xylan D-ribofuranose cellulose fructose-1,6- trehalose PRPP biosynthesis reductase: gpr L-1,2-propanediol fadB -glycerol Kdo-(2->6)-lipid A (E. coli) (acetamidomethylphosphonate) pyruvate in 16S rRNA 1-sulfonate in 16S rRNA stranded DNA dihydroxybutanal in tRNA monophosphate gmd fucose synthetase: fcI -octulosonate glgA a (3Z)-alk-3- glycero-3-phosphocholine uracil [+ 3 isozymes] aldA oxidoreductase: putative 5-triphosphate γ-aminobutyraldehyde 5 5 galactoside O- aldehyde Tyr 5-fluorouridine L-galactonate xylan α- uridine bisphosphatase: fbp GDP-4-dehydro- α,α-trehalose acetyl-CoA C- 3-hydroxyacyl-CoA α-D-ribose-1-(2-N- hydroquinone:hydrogen 16S rRNA m C1407 16S rRNA m C967 tellurite diamine N- D-3,4- tRNA isobutyraldehyde aldehyde oxygenase: GDP-L-fucose D-ribose 5- cytidylyltransferase: a (1->4)- (S)-lactate coenzyme A enoyl-CoA∆ 3 2 3-hydroxypropionaldehyde 11-deoxycorticosterone hydroxyphenyllactate 3-sulfolactaldehyde endonuclease arylsulfatase: ribokinase: α-D-rhamnose hydroxyacetone fucO -cis-∆ lipase: yhjY dehydrogenase: patD acetyltransferase: dehydrogenase: 35 5'-nucleotidase: oxidoreductase: xylosidase: kinase: udk [+ 3 isozymes] synthase: fcl 6-phosphate α-D-glucan (S)-propane- acyltransferase: dehydrogenase: a 1,2-diacyl- putative lysozyme R of acetamidomethylphosphonate) peroxide methyltransferase: methyltransferase: methyltransferase: acetyltransferase: dihydroxybutanal pseudouridine reductase: ybbO reductase: ahr rutA rbsK cellulose phosphate kdsB -trans- amylomaltase: dehydrogenase: puuC reductase: kduD dehydrogenase: hcxB aminobutyraldehyde reductase: yihU I: endA lacA paoB paoA paoC yjjG lgoD aslA yicI perosamine ribose-phosphate L-1,2-propanediol L-lactate 1,2-diol fadI fadJ sn-glycerol prophage CP-933R: Z2371 -5-triphosphate oxidoreductase: ccp rsmF rsmB tehB speG reductase: yqhD synthase: rluF [+ 2 isozymes] [+ 3 isozymes] F6P biosynthesis GDP-4-dehydro-6- trehalose-6- 1,4-α- malQ a 6-acetyl-β- (Z)-3- UMP D-serine synthetase: α,α-trehalose diphosphokinase: prs CMP-Kdo enoyl-CoA α-D-ribose-1-(2-Ndiphosphatase:- phnM 4-pregnen- (R)-3-(3,4- dehydrogenase: puuC a 5-methylcytosine 1407 a 5-methylcytosine 967 a pseudouridine 35 α D-ribofuranose D-serine D-serine deoxy-β-L-galactose dehydrogenase: dehydrogenase: a 2,3,4-saturated 3-ketoacyl- a 2,3,4-saturated lysozyme: rrrD 3-sulfolactaldehyde 1 D-glycerate 1,3,4-butanetriol 5-fluorouridine D-tagaturonate -D-xylopyranose a cellodextrin permease phosphate glucan isomerase: 3-hydroxypropanoate 1,4-benzoquinone 4-aminobutanoate methanetelluronate a 5'-phosphooligonucleotide N -acetylspermine D-galactoside isobutanol estrone an alcohol ureidoacrylate 5-phosphate glucose-6- per cellulose PRPP gldA lldD fatty acyl CoA CoA 3-oxoacyl-CoA acetamidomethylphosphonate) 20,21-diol-3-one dihydroxyphenyl)lactate in 16S rRNA in 16S rRNA in tRNA fucose synthetase: fcI phosphatase: branching fadB hepta-acylated Kdo cellulose thiolase: a N-acetylmuramoyl-pentapeptide- 2 5-phosphate phosphate α GDP-L-fucose otsB enzyme: (S)-propane- a 1-lysophosphatidylcholine maltopentaose maltose GDP- -D- synthase: pyruvate dodecenoyl- N-acetyl-D-glucosamine lipid A (E. coli) a 1-lysophosphatidylethanolamine a fatty acid isomerase: pgi synthase: fcl glgB 1,2-diol fadA a 2-acylglycerol diphosphoundecaprenol L-glutamine perosamine α α CoA D- D-glucopyranose bcsB bcsA , -trehalose gln ABC gln cellulose GDP-β-L-fucose a glycogen isomerase: 6-phosphate 6 transporter fadJ a mature peptidoglycan an N -L- 1962 UDP-4-amino-4-deoxy- D-ribulose 6-sulfo-D- a 3-dehydro- thymine aldehydo- cytidine N-acetyl-α- (n) phosphatidylglycerolphosphate a [protein]-L- a 5,10- a 5-(carboxymethoxy) (5Z,8Z,11Z,14Z,17Z)-3- a 5' triphospho- a cytosine a 5' diphospho- 3'-cmp (5Z)- β UMP a (2E)-2- glycerol a phosphatidylethanolamine 37 cadaverine cholate β coproporphyrinogen III 5,6-dihydrouracil galactitol D-gluconate a β-lactam -L-lyxopyranose (meso-DAP containing) threonylcarbamoyladenine β-isoaspartate methenyltetrahydrofolate uridine 34 in tRNA oxodocosapentaenoyl-CoA [mRNA] in 23S rRNA -L-arabinopyranose 5-phosphate [mRNA] dodecenoyl-CoA quinovose D-glucoside D-mannose neuraminate enoyl-CoA (1-oleoyl, 2-palmitoyl) UDP-4-amino-4- thymine pyrimidine 5'- acetyl-CoA glycerol in tRNA 5 5 α cytidine 3'-phosphate aldehyde D-glucoside 3- D-gluconate 5- β L-lyxose mannose cytidine leucine / L- phosphatidylglycerophosphatase: 5,10- tRNA cmo U34 putative beta- RNA 23S rRNA m C1962 7- -hydroxysteroid probable RNA dihydropyrimidine acyl-CoA sulfoquinovose oxygenase: -lactamase: nucleotidase: tRNA L-isoaspartate protein aminopropylcadaverine deoxy-L-arabinose porphyrinogen phosphohydrolase: reductase: yahK dehydrogenase: dehydrogenase: isomerase: isomerase: kinase: udk Aminoacyl-tRNA Charging tRNA charging peptidoglycan lytic pgpA methenyltetrahydrofolate methyltransferase: ketoacyl-ACP pyrophosphohydrolase: methyltransferase: dehydrogenase: phosphoribulokinase: phosphohydrolase: dehydrogenase: dehydrogenase: isomerase: yihS rutA ampC phe phenylalanine phe threonylcarbamoyladenosine carboxylmethyltransferase: pcm synthase: speE aminotransferase: peroxidase: yfeX umpG yjjG phosphatidylglycerol exotransglycosylase: mltA phosphatidylglycerophosphatase: hydrolase: glyA cmoM reductase: Z4865 rppH rlmI hdhA prkB rppH preA preT [+ 3 isozymes] fadE ycjS kduD [+ 2 isozymes] rhaA yihS ABC transporter dehydratase: tcdA β arnB (Z)-2- [+ 2 isozymes] CMP β synthase: clsB 6 a protein L- - 1962 cytidine 6-deoxy-6- N-acetyl- - [+ 2 isozymes] pgpB a cyclic N -L- a (6S)-5- a 5-(methoxycarbonylmethoxy) (3R,5Z,8Z,11Z,14Z,17Z)-3- a 5'-phospho- a 5-methylcytosine 3α,12α-dihydroxy-7- UDP-β-L-threo- D-ribulose-1,5- a 5'-phospho- uracil D-galactopyranose (2E,5Z)- a D-glucoside 5-dehydro- a substituted L-xylulose keto-D-fructose phe Phe 1-oleoyl-2-palmitoyl- isoaspartate aminopropylcadaverine coproporphyrin III methylureidoacrylate uridine neuraminate a tRNA threonylcarbamoyladenosine formyltetrahydrofolate uridine 34 in tRNA hydroxydocosapentaenoyl-CoA [mRNA] in 23S rRNA oxo-5β-cholan-24-oate pentapyranos-4-ulose bisphosphate [mRNA] dodecenoyl-CoA sulfo-D-fructose D-gluconate β-amino acid L-valine phosphatidylglycerol α-methyl ester val val a mature peptidoglycan GlcNAc-1,6-anhMurNAc- 37 in tRNA exporter Lys ethanolamine a phosphatidylglycerol (n) lys a tRNA (meso-DAP containing) L-Ala-γ-D-Glu-DAP-D-Ala phenylalanyl-tRNA ser a tRNA ser synthetase (pheST) a tRNA Ala ala arg a tRNA Arg asn tRNA Asn tRNA asp asp gly a tRNA Gly cys a tRNA Cys gln a tRNA Gln glu a tRNA glu his a tRNA His ile a tRNA Ile leu a tRNA Leu elongator tRNA Met met initiator tRNA Met met pro a tRNA Pro thr a tRNA Thr trp a tRNA Trp tyr a tRNA Tyr val a tRNA Val branched chain lysine--tRNA operon leader UDP-α-D-galactose α-L-Fuc-(1->4)-2/3-O-Ac-α-L- a 5-carboxymethylaminomethyluridine 34 a 5-(methoxycarbonylmethoxy) (R)-4'- a double β-D-glucopyranose (Z)-2- a [release factor]- glucosyl-(heptosyl) - glucosyl-(heptosyl) dTTP UDP-α-D-glucuronate uridine 2457 dCMP dUMP 5,6- 2'-deoxyuridine CMP 2'-deoxycytidine thymidine 3-phosphooxypyruvate demethylmenaquinol-8 3 L-arabinitol glycerol L-rhamnonate an aldose a D-guloside α-lactose 3'-UMP 2'CMP amino acid / ligase: lysU peptide: pheM Fuc-(1->3)-α-D-Glc-PP-Und Leu 34 phosphopantothenoyl- -Kdo -lipid A dihydrothymine 3'-monophosphate L-serine:tRNASer in tRNA uridine in tRNA stranded DNA 1-phosphate methylureidoacrylate L-glutamine Kdo -lipid A-phosphate 2 2 UDP-glucuronate in 23S rRNA dCMP dUMP leu leu 2 dTTP dihydropyrimidine pyrimidine 5'- phenylalanine alanine--tRNA arginine--tRNA asparagine--tRNA aspartate--tRNA glycine--tRNA cysteine--tRNA glutamine--tRNA glutamate--tRNA histidine--tRNA isoleucine--tRNA leucine--tRNA lysine--tRNA methionine--tRNA methionine--tRNA phenylalanine--tRNA proline--tRNA ligase (AMP- threonine--tRNA tryptophan--tRNA tyrosine--tRNA valine--tRNA tRNA (5- tRNA (5- L-cysteine peroxyureidoacrylate/ protein-(glutamine-N 5 lipopolysaccharide lipopolysaccharide 23S rRNA aldehyde aldehyde L-rhamnonate aldehyde D-guloside 3- deoxyuridine thymidine β-phosphoglucomutase: pyrophosphohydrolase: dehydrogenase: phosphohydrolase: phosphohydrolase: β-galactosidase: 3'-nucleotidase: nucleotidase: 3-phosphohydroxypyruvate exodeoxyribonuclease demethylmenaquinone 2457 dehydrogenase: kinase: tdk ABC transporter ligase: alaS ligase: argS ligase: asnS ligase: aspS ligase: glyQ glyS ligase: cysS ligase: glnS ligase: gltX ligase: hisS ligase: ileS ligase: leuS ligase: lysS ligase: metG ligase: metG ligase: pheS pheT ligase: proS forming): serS ligase: thrS ligase: trpS ligase: tyrS ligase: valS galactosyltransferase: carboxymethylaminomethyluridine) methoxycarbonylmethoxyuridine) 4'-phosphopantothenoylcysteine ureidoacrylate ) methyltransferase: core heptose core heptose arnA pseudouridine yfbR reductase: yahK reductase: yahK dehydratase: dehydrogenase: dehydrogenase: umpG kinase: tdk phosphatase: nudL V: recC recD recB methyltransferase: ubiE ycjU nudI yfbR preA preT lacZ yjjG wcaC -ribose methyltransferase: trmL -ribose methyltransferase: trmL decarboxylase: dfp amidohydrolase: rutB prmC (II) kinase: waaY (I) kinase: waaP β synthase: rluE [+ 3 isozymes] [+ 3 isozymes] rhmD paoB paoA paoC ycjQ [+ 2 isozymes] UDP- -L-threo- 2'-deoxycytidine 2'-deoxyuridine dUMP [+ 2 isozymes] dTMP leucine / L- β-D-glucose 5 glucosyl-(heptosyl) -Kdo glucosyl-(heptosyl) - 2457 thymine 2-dehydro-3-deoxy- a 3-dehydro- uridine 2'-deoxycytidine cytidine a 5-carboxymethylaminomethyl- a 5-(methoxycarbonylmethoxy) (Z)-2- a [release factor]-N 3 2 2 pentapyranos-4-ulose a pseudouridine L-arabinopyranose L-glyceraldehyde an aldonate allolactose Ala Arg Asn asp Gly Cys Gln Glu His Ile Leu Lys Met Met Phe Pro ser Thr Trp Tyr Val hydroxypyruvate a 5'-phosphooligonucleotide menaquinol-8 dTMP cytidine leu phenylalanine leu an L-alanyl-[tRNA ] an L-arginyl-[tRNA ] an L-asparaginyl-[tRNA ] an L-aspartyl-[tRNA ] a glycyl-[tRNA ] an L-cysteinyl-[tRNA ] an L-glutaminyl-[tRNA ] an L-glutamyl-[tRNA ] an L-histidyl-[tRNA ] an L-isoleucyl-[tRNA ] an L-leucyl-[tRNA ] an L-lysyl-[tRNA ] an L-methionyl-[elongator tRNA ] an L-methionyl-[initiator tRNA ] an L-phenylalanyl-[tRNA ] an L-prolyl-[tRNA ] an L-seryl-[tRNA ] an L-threonyl-[tRNA ] an L-tryptophanyl-[tRNA ] an L-tyrosyl-[tRNA ] an L-valyl-[tRNA ] 34 Leu 34 4'-phosphopantetheine 6-phosphate -lipid A-bisphosphate Kdo -lipid A-phosphate L-rhamnonate D-guloside α-D-Gal-(1->3)-α-L-Fuc-(1->4)-2/3-O UDP 2'-O-methyluridine in tRNA -2'-O-methyluridine in tRNA methylaminoacrylate -methyl-L-glutamine 2 in 23S rRNA ABC transporter -Ac-α-L-Fuc-(1->3)-α-D-Glc-PP-Und D-selenomethionine 1,6- a ferric L-alanyl-γ-D- val N-acetyl-DL-methionine iron(III)- histidine N-acetyl-D- α,α- N,N'- 3-O-β-D-galactopyranosyl-D-arabinose an aliphatic anhydro- D-cycloserine his ABC his hydroxamate M-antigen glutamyl-meso- phe L-methionine S-oxide L-arabinose nalidixate pyruvate molybdate enterobactin D-fructose N-acetyl-α-D- hydrophilic val val N-acetyl-β- muramate 6- (S)-2-hydroxybutanoate (2R,4S)-2-methyl-2,3,3,4- cadaverine 4-aminobutanoate β-alanine L-tartrate Li + an [HPr]- an [HPr]- deoxycholate a lyso-cardiolipin trehalose 6- diacetylchitobiose deoxycholate glycolate 1-(β-D D-glycerate D-glycerate an ion an ion an ion melibionate a hexose complex α-D-galactofuranose cefoperazone sulfonate diaminopimelate ile [+ 2 more] L-arabinose phe ser putrescine molybdate molybdate + complex an antibiotic an aromatic a dipeptide transporter a D- 1-phosphate D-ribopyranose D-glucuronate a C4-dicarboxylate monomer galactosamine solute < α-L- GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala leu met muramate phosphate glycolate phe tyr carbonylcyanide m-chlorophenylhydrazone deoxycholate methyl-β-D- tetrahydroxytetrahydrofuran ser lys lys a quaternary ammonium compound pro glu glu pro D-serine a peptide ala cis-vaccenoyl-CoA cis-vaccenoyl-CoA trp trp trp ser acetate methyl-β-D-galactoside L-histidine L-histidine tetraphenylphosphonium a lysophosphatidylglycerol 3-(3-hydroxyphenyl)propanoate asn phosphate 6'-phosphate L-galactose K methyl-α-D-galactopyranoside acetate α-L- a long-chain ribofuranosyl) N 6 -(D-psicosyl)-L-lysine 6-sulfo-D- D-glucarate D-glucarate an organosulfur compound an organosulfur compound an organosulfur compound lactulose phosphate β-D-galactofuranose ammonium met L-arabinose L-homoserine cadaverine 5-aminopentanoate tyr propanoate 2-oxoglutarate 4-aminobutanoate an amino (S)-lactate D-xylose pyruvate thr putrescine putrescine putrescine succinate D-galactopyranose D-galactopyranose melibiose melibiose melibiose D-gluconate D-gluconate D-gluconate a tripeptide a tripeptide a tripeptide cyanate amino acid a dipeptide a dipeptide a dipeptide a nucleoside a nucleoside orotate undecaprenyl ala cytosine β β leu lys deoxycholate a drug (2R,4S)-2-methyl-2,3,3,4- pro antibiotic a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA succinate 2-nitroimidazole norfloxacin non-specific non-specific non-specific 3-hydroxycinnamate a drug fatty acid N 6 -(D-fructosyl)-L-lysine a short-chain carboxylate a short-chain carboxylate a short-chain carboxylate α-lactose a lipopolysaccharide glucoronoside D-galacturonate fosmidomycin 1-phosphate phosphinate 900 Da chloramphenicol arabinopyranose N-acetyl- -D-glucosamine-1,6-anhydro-N-acetyl- -D-muramate leu ile (R)-lactate L-arabinose thr galactoside acid [+ 2 more] melibiose a drug a 1-lysophosphatidylethanolamine D-arabinose melibionate tellurite rhamnopyranose nicotinamide quinovose galactarate galactarate α-lactose diphosphate ile carbonylcyanide m-chlorophenylhydrazone tetrahydroxytetrahydrofuran a drug a drug ion/solute ion/solute ion/solute cholate [+ 27 more] [+ 27 more] [+ 27 more] partial high- iron(III) putative aliphatic murein branched chain L-methionine/ predicted sulfate/ ferric putative fructose- N-acetylmuramic N-acetylmuramic affinity L- arabinose multidrug tripartite Autoinducer- putrescine mannose- mannose- thiosulfate/ molybdate trehalose- N,N'- dipeptide hexosephosphate hydroxamate ribose ABC galactofuranose ABC sulfonate tripeptide amino acid / D-methionine transporter thiosulfate enterobactin antibiotic UidB specific PTS ExuT Fsr DctA WzxC AlaE AgaV FocA OmpG MdtL AraJ AmtB CodB AmpG LeuE BrnQ YjeH LysO acid-specific acid-specific LldP PheP arabinose YdeA AraE ABC RhtA CadB GabP AroP TyrP PutP efflux pump efflux pump MglBAC KgtP EmrD GabP YddG LldP TqsA 2 ABC XylE SdaC LysP CadB PPIII PutP GltS GadC BtsT ProP CycA SbmA CycA TdcC PotE FadK FadD PlaP PuuP ABC Mtr AroP TnaB SstT SatP TtdT GalP MglBAC LacY MelB MelB MelB GntP GntT specific PTS specific PTS GntU sulfate ABC ABC NimT MdtK Bcr MscS MscK MscL LplT MhpT AnsP specific PTS diacetylchitobiose- FucP MdtM MelB DtpA DtpC DtpB ActP RhaT CynX FadL PnuC FrlA YihO GudP GarP YbaT ABC OmpF PhoE OmpC LacY SetB DtpA DtpC DtpB Tsx NupG MsbA transport ABC transporter ABC transporter exporter ABC ABC phenylalanine ABC complex of ABC ABC efflux enzyme II PTS enzyme II PTS enzyme II transport transporter EmrAB-TolC EmrKY-TolC transporter transporter enzyme II enzyme II transporter transporter enzyme II specific PTS enzyme II transporter transporter YbhFSR transporter transporter ABC transporter transporter GALACTITOL transporter transporter protein system a D- D-glucuronate N-acetyl-α-D- hydrophilic α-L- GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala val (S)-2-hydroxybutanoate methyl-β-D- a quaternary ammonium compound a peptide D-cycloserine cis-vaccenate cis-vaccenate acetate methyl-β-D-galactoside a lyso-cardiolipin 3-(3-hydroxyphenyl)propanoate L-galactose methyl-α-D-galactopyranoside glycolate α-L- a long-chain 1-(β-D N 6 -(D-psicosyl)-L-lysine 6-sulfo-D- D-glycerate D-glycerate 3-O-β-D-galactopyranosyl-D-arabinose a hexose a C4-dicarboxylate α-D-galactofuranose cytosine L-arabinose phe D-xylose ser D-galactopyranose D-galactopyranose melibiose melibiose D-gluconate D-gluconate D-gluconate an aromatic M-antigen ammonium β β val cadaverine 5-aminopentanoate propanoate 2-oxoglutarate 4-aminobutanoate (S)-lactate pyruvate β putrescine putrescine putrescine deoxycholate α α deoxycholate a tripeptide a tripeptide a tripeptide cyanate 6 an ion an ion an ion a dipeptide a dipeptide a dipeptide a nucleoside a nucleoside a lipopolysaccharide glucoronoside D-ribopyranose D-galacturonate orotate β galactosamine solute < arabinopyranose N-acetyl- -D-glucosamine-1,6-anhydro-N-acetyl- -D-muramate leu 1,6- N-acetyl-D- glycolate phe L-arabinose tyr galactoside a drug (2R,4S)-2-methyl-2,3,3,4- (2R,4S)-2-methyl-2,3,3,4- ser lys pro pro glu pro D-serine antibiotic -alanine a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid trp trp trp ser succinate melibiose melibiose 2-deoxy- 2-nitroimidazole non-specific non-specific non-specific a lysophosphatidylglycerol 3-hydroxycinnamate asn , - N,N'- D-arabinose melibionate acetate rhamnopyranose fatty acid ribofuranosyl) N -(D-fructosyl)-L-lysine quinovose D-glucarate D-glucarate melibionate α-lactose fosmidomycin -D-galactofuranose phosphinate chloramphenicol γ-D- met L-arabinose L-homoserine an amino thr succinate D-mannopyranose a drug + iron(III)- amino acid phosphate a ferric D-fructose monomer ala 900 Da an aliphatic L-alanyl- ile met val lys muramate (R)-lactate D-selenomethionine tyr nalidixate carbonylcyanide m-chlorophenylhydrazone tetrahydroxytetrahydrofuran lys glu putrescine D-glucose molybdate molybdate a drug tetraphenylphosphonium ion/solute ion/solute ion/solute a 1-lysophosphatidylethanolamine trehalose diacetylchitobiose K tellurite nicotinamide galactarate galactarate a dipeptide an organosulfur compound an organosulfur compound an organosulfur compound lactulose leu anhydro- thr acid tetrahydroxytetrahydrofuran galactitol ala molybdate hydroxamate glutamyl-meso- phe N-acetyl-DL-methionine L-arabinose deoxycholate 4-aminobutanoate L-tartrate Li + enterobactin undecaprenyl cefoperazone sulfonate leu N-acetyl-β- carbonylcyanide m-chlorophenylhydrazone cadaverine [+ 2 more] norfloxacin a drug an antibiotic a short-chain carboxylate a short-chain carboxylate a short-chain carboxylate α-lactose complex diphosphate diaminopimelate ile L-methionine S-oxide complex ile muramate deoxycholate a drug cholate [+ 27 more] [+ 27 more] [+ 27 more] [+ 2 more] Copyright © 2014, SRI International. All Rights Reserved. This diagram was automatically generated by SRI International Pathway Tools version 25.0, authors S. Paley and P.D. Karp.