U 1. Uracil. 2. Uridine. 3. Enzyme Unit. 4. Uranium. 5. Uniformly Labeled. Ul

Total Page:16

File Type:pdf, Size:1020Kb

U 1. Uracil. 2. Uridine. 3. Enzyme Unit. 4. Uranium. 5. Uniformly Labeled. Ul U U 1. Uracil. 2. Uridine. 3. Enzyme unit. 4. UEP Unit evolutionary period. Uranium. 5. Uniformly labeled. UFA Unesterified fatty acids. Ul One of a group of small nuclear UIBC Unsaturated iron-binding capacity. ribonucleoproteins (snRNP) that function in ultimate carcinogen The form of a carcinogen the splicing of nuclear pre-mRNA. Ul con- in which it ultimately reacts with cellular mac- sists of several polypeptides and an RNA romolecules; the reactive intermediate formed molecule (165 nucleotides) that contains a from a carcinogen that is inacitve per se. The segment that is complementary to the accep- ultimate carcinogen is believed to be a form tor and donor junctions of introns. Other that contains an electrophilic center (such as a members of the group that have been iden- carbonium ion, free radical, epoxide, or metal tified include U2, U4, U5, and U6. cation) that attacks electron-rich centers in Ubbelohde viscometer A capillary-type visco- proteins and nucleic acids. meter that permits the measurements of vis- ultimate precision See method of ultimate pre- cosity as a function of concentration, since the cision. solution can be diluted directly in the visco- ultra- 1. Prefix meaning excessive. 2. Prefix meter. meaning beyond the range of. ubiquinol Reduced coenzyme Q; CoQH2. ultracentrifugation Centrifugation, performed ubiquinol: cytochrome C oxidoreductase Com- in an ultracentrifuge, in which high centrifugal plex III. forces are used. ubiquinone Coenzyme Q. ultracentrifuge A high-speed centrifuge cap- ubiquitin A small, heat-stable, nonenzymatic able of generating speeds of approximately polypeptide of 76 amino acids that is widely 60,000 rpm and centrifugal forces of approx- distributed (as its name implies) in eukaryotic imately 500,000 x g. cells. ATP hydrolysis drives a reaction where- ultracryotomy The preparation of thin sections by ubiquitin becomes covalently linked, via its from frozen tissue specimens. carboxyl group, to the amino group of lysine ultrafiltration The filtration of a solution in proteins that are substrates for proteolysis. through a filter or a membrane that will retain It is believed that the attachment of ubiquitin macromolecules. marks a given protein for rapid intracellular ultramicrotome A microtome for cutting very degradation; it may serve to tag damaged or thin sections of tissues, about 0.05 to 0.10 jim abnormal proteins. Ubiquitin is also involved in thickness, for electron microscopic ex- in histone modification and appears to be part amination. of certain receptor sites on lymphocyte sur- ultrasonic Of, or pertaining to, ultrasound. faces. ultrasonication The exposure of material to ubiquitination The covalent linking of ubi- ultrasound; used for the rupture of cells and quitin to a protein. the denaturation of proteins. ubiquitous RNA A class of RNA molecules ultrasound Sound waves that have frequencies that form part of the small nuclear RNA greater than those of audible sound; refers complement and that have wide occurrence. particularly to sound waves that have frequen- Ribosomal 5S RNA and transfer RNAs are cies of 500,000 cps or higher. examples. ultrastructure The fine structure of tissues, UDP 1. Uridine diphosphate. 2. Uridine-5'- cells, and subcellular particles beyond that re- diphosphate. vealed by the light microscope. UDPG Uridine diphosphate glucose; see UDP- ultraviolet dichroism The dichroism produced glucose. when ultraviolet light is absorbed by oriented UDP-GaI Uridine diphosphate galactose, samples such as nucleic acid preparations. UDP-GIc Uridine diphosphate glucose; see ultraviolet microscope A microscope that util- UDP-glucose. izes ultraviolet light for illumination of the UDP-glucose Uridine diphosphate glucose; a specimen and for image formation. It has nucleoside diphosphate sugar that serves as twice the resolving power of an ordinary light the donor of a glucose residue in the biosyn- microscope and may be used for estimating thesis of glycogen. Abbr UDPG; UDP-GIc. the amount of nucleic acid in a sample. ultraviolet optics ABSORPTION OPTICAL SYSTEM. uncompensated acidosis An acidosis in which ultraviolet spectrum That part of the electro- the blood pH falls due to insufficient com- magnetic spectrum that covers the wavelength pensatory mechanisms. range of about 1.3 x 10~6 to 4 x 10~5 cm and uncompensated alkalosis An alkalosis in which that includes photons which are emitted or the blood pH rises due to insufficient com- absorbed during electronic transitions; radia- pensatory mechanisms. tion of the shorter wavelengths is known as uncompetitive inhibition The inhibition of the far ultraviolet, and that of the longer wave- activity of an enzyme that is characterized by lengths is known as near ultraviolet. Abbr a decrease in the maximum velocity compared UV spectrum. to that of the uninhibited reaction and by a umber codon The codon UGA; one of the reciprocal plot (I/velocity versus I/substrate three termination codons. Aka opal codon. concentration) which is parallel to that of the umber mutation A mutation in which a codon uninhibited reaction. See also degree of in- is mutated to the umber codon, thereby caus- hibition. ing the premature termination of the synthesis uncompetitive inhibitor An inhibitor that binds of a polypeptide chain. to the enzyme-substrate complex but does not UMP 1. Uridine monophosphate (uridylic bind to the free enzyme. acid). 2. Uridine-5'-monophosphate (5'- uncoupler Uncoupling agent. uridylic acid). uncoupling 1. The separation of the two pro- unbalanced growth The growth of cells cesses that constitute oxidative phosphoryla- such that not all of the cellular components tion such that ATP synthesis is dissociated increase by the same factor and, hence, the fromt he electron transport system at one or overall composition of the cells does not re- more of the phosphorylation sites. As a result main constant. A given increase in the con- of uncoupling, ATP synthesis is inhibited but centration of protein, DNA, RNA, lipid, or electron transport and respiration are allowed some other macromolecule is not coincident to proceed and may even be stimulated. 2. with the same increase in the mass and num- The decreased sensitivity of target cells to sti- ber of cells. mulation by a ligand that is due to the fact uncertainty principle The principle, enunciated that specific receptors, while still present, are by Heisenberg, that it is impossible to know unable to activate a particular enzyme. The simultaneously, with absolute precision, both two processes of ligand binding to a receptor the position and the speed of a small particle, and enzyme activation by the ligand-receptor such as an electron. Specifically, the product complex have been separated. See also desen- of the uncertainty in position Ax and the un- sitization (3). certainty in momentum Ap can be no smaller uncoupling agent An inhibitor that brings than Planck's constant h. Thus, AJC-Ap ^ h. about the uncoupling of ATP synthesis from Depending on the precise definition of Ax and the electron transport system at one or more Ap, the right side of this expression can be /t, of the phosphorylation sites. /i/2ir, or /i/4ir. Aka Heisenberg uncertainty undecaprenol A long-chain lipid, containing 11 principle. isoprene units, that serves as a carrier (in the uncharged polar amino acid A polar amino form of undecaprenol phosphate) of carbohy- acid that carries no charge in the intracellular drates in the biosynthesis of peptidoglycan in pH range of about 6 to 7. bacteria. See also glycosylation. uncharged tRNA A transfer RNA molecule undecaprenol phosphate See undecaprenol. that does not have an amino acid covalently undernutrition Malnutrition resulting from the linked to it. consumption of inadequate amounts of food uncoating The removal of the protein coat so that one or more of the essential nutrients from a virus that occurs extracellularly in the are lacking in the diet. Aka undernourish- case of bacterial viruses and, apparently, in- ment. tracellularly in the case of animal viruses. underwinding Negative supercoiling; see super- uncoating enzyme An enzyme that functions in helix. the removal of the protein coat from a virus. uneconomic species An undesirable species; the uncoded amino acid An amino acid, such as species that is eliminated by another, desir- hydroxyproline or hydroxylysine, for which no able, species through the use of chemicals. codon exists. Such an amino acid is derived by uni- 1. Referring to one kinetically important enzymatic modification of the parent amino substrate and/or product of a reaction; thus a acid (e.g., proline or lysine) after the parent uni bi reaction is a reaction with one substrate amino acid has become incorporated into a and two products. 2. Prefix meaning one. polypeptide chain in response to its codon. unidirectional replication DNA replication that proceeds in one direction; one replicating fork unit membrane hypothesis The hypothesis that moving in a given direction, as in the rolling the structure of biological membranes can circle model. be described in terms of a unit membrane, uniformitarianism See doctrine of uniformitar- about 90 A thick. The unit membrane is con- ianism. sidered to be a bilayer of polar lipids, such uniformly labeled Designating a compound as phospholipids, surrounded on both sides that is labeled in all of the positions in the by protein. The lipids are arranged with their molecule in a statistically uniform or nearly nonpolar portions inward and their polar por- uniform manner; generally refers to 14C- tions outward where they are coated with labeled compounds. Sym U. protein molecules that are in their beta con- unifunctional feedback A feedback mechanism figuration. Aka Danielli-Davson-Robertson that affords control in only one direction so model; Robertson model. See also Danielli- that the input of a system is affected by either Davson model; fluid mosaic model. an increase or a decrease of the output; a unit mitochondrion hypothesis A controversial system in which the pH will be adjusted if it idea, proposed by some biologists, according rises above the normal value is an example.
Recommended publications
  • 35 Disorders of Purine and Pyrimidine Metabolism
    35 Disorders of Purine and Pyrimidine Metabolism Georges van den Berghe, M.- Françoise Vincent, Sandrine Marie 35.1 Inborn Errors of Purine Metabolism – 435 35.1.1 Phosphoribosyl Pyrophosphate Synthetase Superactivity – 435 35.1.2 Adenylosuccinase Deficiency – 436 35.1.3 AICA-Ribosiduria – 437 35.1.4 Muscle AMP Deaminase Deficiency – 437 35.1.5 Adenosine Deaminase Deficiency – 438 35.1.6 Adenosine Deaminase Superactivity – 439 35.1.7 Purine Nucleoside Phosphorylase Deficiency – 440 35.1.8 Xanthine Oxidase Deficiency – 440 35.1.9 Hypoxanthine-Guanine Phosphoribosyltransferase Deficiency – 441 35.1.10 Adenine Phosphoribosyltransferase Deficiency – 442 35.1.11 Deoxyguanosine Kinase Deficiency – 442 35.2 Inborn Errors of Pyrimidine Metabolism – 445 35.2.1 UMP Synthase Deficiency (Hereditary Orotic Aciduria) – 445 35.2.2 Dihydropyrimidine Dehydrogenase Deficiency – 445 35.2.3 Dihydropyrimidinase Deficiency – 446 35.2.4 Ureidopropionase Deficiency – 446 35.2.5 Pyrimidine 5’-Nucleotidase Deficiency – 446 35.2.6 Cytosolic 5’-Nucleotidase Superactivity – 447 35.2.7 Thymidine Phosphorylase Deficiency – 447 35.2.8 Thymidine Kinase Deficiency – 447 References – 447 434 Chapter 35 · Disorders of Purine and Pyrimidine Metabolism Purine Metabolism Purine nucleotides are essential cellular constituents 4 The catabolic pathway starts from GMP, IMP and which intervene in energy transfer, metabolic regula- AMP, and produces uric acid, a poorly soluble tion, and synthesis of DNA and RNA. Purine metabo- compound, which tends to crystallize once its lism can be divided into three pathways: plasma concentration surpasses 6.5–7 mg/dl (0.38– 4 The biosynthetic pathway, often termed de novo, 0.47 mmol/l). starts with the formation of phosphoribosyl pyro- 4 The salvage pathway utilizes the purine bases, gua- phosphate (PRPP) and leads to the synthesis of nine, hypoxanthine and adenine, which are pro- inosine monophosphate (IMP).
    [Show full text]
  • The Nutrition and Food Web Archive Medical Terminology Book
    The Nutrition and Food Web Archive Medical Terminology Book www.nafwa.
    [Show full text]
  • Utilisation Des Cellules Souches Pluripotentes Pour Le Criblage À Haut Débit De Molécules Thérapeutiques
    Utilisation des cellules souches pluripotentes pour le criblage à haut débit de molécules thérapeutiques dans la maladie de Lesch-Nyhan : 2019SACLE011 NNT Thèse de doctorat de l'Université Paris-Saclay, préparée à l’Université d’Evry Val-d’Essonne École doctorale n°569 Innovation thérapeutique : du fondamental à l’appliqué (ITFA) Spécialité de doctorat: Immunologie Thèse présentée et soutenue à Corbeil-Essonnes, le 01 juillet 2019, par Valentin Ruillier Composition du Jury : Dr. Olivier Goureau Institut de la Vision, Université Sorbonne, Paris Président Pr. Odile Boespflug-Tanguy Université Paris Diderot, Hôpital Robert Debré, Paris Rapporteur Dr. Amélie Piton IGBMC, Hôpitaux Universitaires de Strasbourg Rapporteur Dr. Terence Beghyn APTEEUS, Lille Examinateur Pr. Christelle Monville UEVE/INSERM U861, I-STEM, Corbeil-Essonnes Directeur de thèse Dr. Alexandra Benchoua CECS, I-STEM, Corbeil-Essonnes Co-Encadrant Résumé - Abstract Mots clés : Maladie de Lesch-Nyhan, cellules souches pluripotentes, iPSC, criblage à haut débit, HGPRT, purines Résumé : Les mutations affectant la fonction identifier, par une approche de criblage à haut d’enzymes impliquées dans le cycle des purines débit, de nouvelles molécules chimiques capables sont responsables d’une multitude de syndromes de corriger ces défauts. Plus de 3000 molécules pédiatriques, caractérisés par des atteintes ont été testées et 6 composés, tous dérivés de neurologiques et comportementales. A ce jour, l’adénosine, ont pu être identifiés comme aucune stratégie thérapeutique n’a été compensant le métabolisme par un mécanisme réellement efficace pour contrôler ces d’action indépendant de l’HGPRT. De manière symptômes. La maladie de Lesch-Nyhan (MLN), intéressante, un des composés, la S- associée à la perte de fonction de l’enzyme de adenosylmethionine (SAM) a par le passé déjà recyclage HGPRT, constitue un bon modèle démontré des effets bénéfiques sur les d’étude.
    [Show full text]
  • Reconstituted IMPDH Polymers Accommodate Both Catalytically Active and Inactive Conformations
    M BoC | BRIEF REPORT Reconstituted IMPDH polymers accommodate both catalytically active and inactive conformations Sajitha A. Anthonya,†, Anika L. Burrellb,†, Matthew C. Johnsonb, Krisna C. Duong-Lya, Yin-Ming Kuoa, Jacqueline C. Simoneta, Peter Michenerc, Andrew Andrewsa, Justin M. Kollmanb,†,*, and Jeffrey R. Petersona,†,* aCancer Biology Program, Fox Chase Cancer Center, Philadelphia, PA 19111; bDepartment of Biochemistry, University of Washington, Seattle, WA 98195; cDepartment of Biochemistry & Molecular Biology, Drexel University College of Medicine, Philadelphia, PA 19102 ABSTRACT Several metabolic enzymes undergo reversible polymerization into macromo- Monitoring Editor lecular assemblies. The function of these assemblies is often unclear, but in some cases they Diane Barber regulate enzyme activity and metabolic homeostasis. The guanine nucleotide biosynthetic University of California, San Francisco enzyme inosine monophosphate dehydrogenase (IMPDH) forms octamers that polymerize into helical chains. In mammalian cells, IMPDH filaments can associate into micron-length Received: Apr 25, 2017 assemblies. Polymerization and enzyme activity are regulated in part by binding of purine Revised: Aug 2, 2017 nucleotides to an allosteric regulatory domain. ATP promotes octamer polymerization, Accepted: Aug 4, 2017 whereas guanosine triphosphate (GTP) promotes a compact, inactive conformation whose ability to polymerize is unknown. Also unclear is whether polymerization directly alters IMPDH catalytic activity. To address this, we identified point mutants of human IMPDH2 that either prevent or promote polymerization. Unexpectedly, we found that polymerized and nonassembled forms of recombinant IMPDH have comparable catalytic activity, substrate affinity, and GTP sensitivity and validated this finding in cells. Electron microscopy revealed that substrates and allosteric nucleotides shift the equilibrium between active and inactive conformations in both the octamer and the filament.
    [Show full text]
  • A Comparative Study of Purinoceptors in Some Invertebrates and Vertebrates
    A COMPARATIVE STUDY OF PURINOCEPTORS IN SOME INVERTEBRATES AND VERTEBRATES by Gillian Elizabeth Knight G.l.Biol Department Of Anatomy and Centre for Neuroscience, University College London, Gower Street, London WCIE 6BT Thesis submitted for the degree of Doctor of Philosophy University of London ProQuest Number: 10017490 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. uest. ProQuest 10017490 Published by ProQuest LLC(2016). Copyright of the Dissertation is held by the Author. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. Microform Edition © ProQuest LLC. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 ABSTRACT The main objective of this thesis has been to identify and characterise responses to purine compounds in a variety of invertebrates and lower vertebrates, and to examine whether they act on receptors that resemble the purinoceptor subtypes established in mammals. Tissues were chosen largely from the gastrointestinal or cardiovascular systems. In mammalian systems adenosine and adenosine 5 ’-triphosphate (ATP) activate separate classes of purinoceptors; this also appears to be true for tissues in most invertebrate groups, but there are exceptions, for instance the hearts of the snail Helix aspeTsa, and slug Avion atev, and the snail rectum all possess purinoceptors that do not appear to distinguish the purine nucleosides from nucleotides.
    [Show full text]
  • Small Elevations of Glucose Concentration Redirect and Amplify the Synthesis of Guanosine 5'-Triphosphate in Rat Islets
    Small elevations of glucose concentration redirect and amplify the synthesis of guanosine 5'-triphosphate in rat islets. S A Metz, … , M E Rabaglia, A Kowluru J Clin Invest. 1993;92(2):872-882. https://doi.org/10.1172/JCI116662. Research Article Recent studies suggest a permissive requirement for guanosine 5'-triphosphate (GTP) in insulin release, based on the use of GTP synthesis inhibitors (such as myocophenolic acid) acting at inosine monophosphate (IMP) dehydrogenase; herein, we examine the glucose dependency of GTP synthesis. Mycophenolic acid inhibited insulin secretion equally well after islet culture at 7.8 or 11.1 mM glucose (51% inhibition) but its effect was dramatically attenuated when provided at < or = 6.4 mM glucose (13% inhibition; P < 0.001). These observations were explicable by a stimulation of islet GTP synthesis derived from IMP since, at high glucose: (a) total GTP content was augmented; (b) a greater decrement in GTP (1.75 vs. 1.05 pmol/islet) was induced by mycophenolic acid; and (c) a smaller "pool" of residual GTP persisted after drug treatment. Glucose also accelerated GTP synthesis from exogenous guanine ("salvage" pathway) and increased content of a pyrimidine, uridine 5'-triphosphate (UTP), suggesting that glucose augments production of a common regulatory intermediate (probably 5-phosphoribosyl-1-pyrophosphate). Pathway-specific radiolabeling studies confirmed that glucose tripled both salvage and de novo synthesis of nucleotides. We conclude that steep changes in the biosynthesis of cytosolic pools of GTP occur at modest changes in glucose concentrations, a finding which may have relevance to the adaptive (patho) physiologic responses of islets to changes in ambient glucose levels.
    [Show full text]
  • Variations in Bacterial Adenosine Triphosphate Values Due to Genus and Environmental Conditions
    VARIATIONS IN BACTERIAL ADENOSINE TRIPHOSPHATE VALUES DUE TO GENUS AND ENVIRONMENTAL CONDITIONS by Ruann Knox Hampson Thesis submitted to the Faculty of the Virginia Polytechnic Institute and State University in partial fulfillment of the requirements for the degree of Master of Science in Food Science and Technology APPROVED: M. D. Pierson, Chairman J. K. Palmer A. A. Yousten December, 1986 Blacksburg, Virginia VARIATIONS IN BACTERIAL ADENOSINE TRIPOSPHATE VALUES DUE TO GENUS AND ENVIRONMENTAL CONDITIONS by Ruann Knox Hampson Committee Chairman: Merle D. Pierson Food Science and Technology (ABSTRACT) Variations in ATP content in three ground beef spoilage bacteria, Lactobacillus brevis, Lactobacillus jensenii, and Pseudomonas sp. were investigated using the bioluminescence (luciferin-luciferase) assay. Environmental factors (temperature, atmosphere, pH, aeration, and phase of growth), as well as differences among genera and species, were studied in relation to their effect on cellular ATP. Variations for each of the environmental factors and bacteria were shown statistically to be significantly different at the 0.05 level. The mean ATP/cell for each of the bacteria was 2.71 fg/cell (1..:_ brevis), 2.20 fg/cell (1..:_ jensenii), and 1.36 fg/cell (Pseudomonas sp.). For all three bacteria, ATP/cell was lower and more stable throughout the culture's growth cycle at 3°c or in N2 . In general, ATP/cell increases from a lowest value in lag phase to a highest value in stationary phase. The effect of sonication on ATP/cell was tested for each bacterium at one set of factors. Sonication studies showed that L. brevis cells were clumping, especially in aged cultures.
    [Show full text]
  • Nucleotide Metabolism Pathway: the Achilles' Heel for Bacterial Pathogens
    REVIEW ARTICLES Nucleotide metabolism pathway: the achilles’ heel for bacterial pathogens Sujata Kumari1,2,* and Prajna Tripathi1,3 1National Institute of Immunology, New Delhi 110 067, India 2Present address: Department of Zoology, Magadh Mahila College, Patna University, Patna 800 001, India 3Present address: Institute of Molecular Medicine, Jamia Hamdard, New Delhi 110 062, India de novo pathway, the nucleotides are synthesized from Pathogens exploit their host to extract nutrients for their survival. They occupy a diverse range of host simple precursor molecules. In the salvage pathway, the niches during infection which offer variable nutrients preformed nucleobases or nucleosides which are present accessibility. To cause a successful infection a patho- in the cell or transported from external environmental gen must be able to acquire these nutrients from the milieu to the cell are utilized to form nucleotides. host as well as be able to synthesize the nutrients on its own, if required. Nucleotides are the essential me- tabolite for a pathogen and also affect the pathophysi- Purine biosynthesis pathway ology of infection. This article focuses on the role of nucleotide metabolism of pathogens during infection The purine biosynthesis pathway is universally conserved in a host. Nucleotide metabolism and disease pathoge- in living organisms (Figure 1). As an example, we here nesis are closely related in various pathogens. Nucleo- present the pathway derived from well-studied Gram- tides, purines and pyrimidines, are biosynthesized by positive bacteria Lactococcus lactis. In the de novo the de novo and salvage pathways. Whether the patho- pathway the purine nucleotides are synthesized from sim- gen will employ the de novo or salvage pathway dur- ple molecules such as phosphoribosyl pyrophosphate ing infection is dependent on various factors, like (PRPP), amino acids, CO2 and NH3 by a series of enzy- availability of nucleotides, energy condition and pres- matic reactions.
    [Show full text]
  • Purine and Pyrimidine Biosynthesis
    Biosynthesis of Purine & Pyrimidi ne Introduction Biosynthesis is a multi-step, enzyme-catalyzed process where substrates are converted into more complex products in living organisms. In biosynthesis, simple compounds are modified, converted into other compounds, or joined together to form macromolecules. This process often consists of metabolic pathways. The purines are built upon a pre-existing ribose 5- phosphate. Liver is the major site for purine nucleotide synthesis. Erythrocytes, polymorphonuclear leukocytes & brain cannot produce purines. Pathways • There are Two pathways for the synthesis of nucleotides: 1. De-novo synthesis: Biochemical pathway where nucleotides are synthesized from new simple precursor molecules 2. Salvage pathway: Used to recover bases and nucleotides formed during the degradation of RNA and DNA. Step involved in purine biosynthesis (Adenine & Guanine) • Ribose-5-phosphate, of carbohydrate metabolism is the starting material for purine nucleotide synthesis. • It reacts with ATP to form phosphoribosyl pyrophosphate (PRPP). • Glutamine transfers its amide nitrogen to PRPP to replace pyrophosphate & produce 5- phosphoribosylamine. Catalysed by PRPP glutamyl amidotransferase. • This reaction is the committed. • Phosphoribosylamine reacts with glycine in the presence of ATP to form glycinamide ribosyl 5- phosphate or glycinamide ribotide (GAR).Catalyzed by synthetase. • N10-Formyl tetrahydrofolate donates the formyl group & the product formed is formylglycinamide ribosyl 5-phosphate. Catalyzed by formyltransferase. • Glutamine transfers the second amido amino group to produce formylglycinamidine ribosyl 5- phosphate. Catalyzed by synthetase. • The imidazole ring of the purine is closed in an ATP dependent reaction to yield 5- aminoimidazole ribosyl 5-phosphate. Catalyzed by synthetase. • Incorporation of CO2 (carboxylation) occurs to yield aminoimidazole carboxylate ribosyl 5- phosphate.
    [Show full text]
  • Etude Des Mécanismes Pathogéniques De La Maladie De Lesch-Nyhan En Relation Avec Le Système Dopaminergique Chez Un Organisme
    Etude des mécanismes pathogéniques de la maladie de Lesch-Nyhan en relation avec le système dopaminergique chez un organisme modèle, Drosophila melanogaster Celine Petitgas To cite this version: Celine Petitgas. Etude des mécanismes pathogéniques de la maladie de Lesch-Nyhan en relation avec le système dopaminergique chez un organisme modèle, Drosophila melanogaster. Neurosciences [q-bio.NC]. Université Paris sciences et lettres, 2019. Français. NNT : 2019PSLET049. tel-03275312 HAL Id: tel-03275312 https://pastel.archives-ouvertes.fr/tel-03275312 Submitted on 1 Jul 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. i Remerciements « Tout seul on va plus vite, ensemble on va plus loin » disait un proverbe africain. En effet, ces travaux de thèse n’auraient jamais été réalisés sans la collaboration et le soutien d’un certain nombre de personnes qui ont contribué, de près ou de loin, à l’aboutissement de ce projet, et que je me dois de remercier chaleureusement. J’aimerais tout d’abord adresser mes sincères remerciements à mon directeur de thèse, le Dr. Serge Birman, pour avoir accepté de superviser mon travail durant ces quatre années. Ce projet n’aurait jamais vu le jour sans votre implication à la fin de mon Master, et j’en suis pleinement reconnaissante.
    [Show full text]
  • Probing the Base Stacking Contributions During
    PROBING THE BASE STACKING CONTRIBUTIONS DURING TRANSLESION DNA SYNTHESIS by BABHO DEVADOSS Submitted in partial fulfillment of the requirements For the degree of Doctor of Philosophy Thesis Adviser: Dr. Irene Lee Department of Chemistry CASE WESTERN RESERVE UNIVERSITY January, 2009 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of _____________________________________________________ candidate for the ______________________degree *. (signed)_______________________________________________ (chair of the committee) ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ (date) _______________________ *We also certify that written approval has been obtained for any proprietary material contained therein. ii TABLE OF CONTENTS Title Page…………………………………………………………………………………..i Committee Sign-off Sheet………………………………………………………………...ii Table of Contents…………………………………………………………………………iii List of Tables…………………………………………………………………………….vii List of Figures…………………………………………………………………….………ix Acknowledgements…………………………………………………………….………..xiv List of Abbreviations…………………………………………………………….………xv Abstract………………………………………………………………………………….xix CHAPTER 1 Introduction…………………………………………………………………1 1.1 The Chemistry and Biology of DNA…………………………………………2 1.2 DNA Synthesis……………………………………………………………….6 1.3 Structural Features of DNA Polymerases…………………………………...11
    [Show full text]
  • 190323111.Pdf
    Characterization of polymers of nucleotide biosynthetic enzymes By Sajitha Anthony April, 2017 A dissertation presented to the faculty of Drexel University College of Medicine in partial fulfillment for the requirements for the degree of Doctor of Philosophy in Molecular and Cellular Biology and Genetics i ii ACKNOWLEDGEMENTS First and foremost, I would like to thank my mentor Dr. Jeffrey Peterson for all of his support and guidance throughout the five years that I have been in his lab. He has truly inspired me with his tremendous enthusiasm for science and his constant encouragement. He has changed, for the better, the way I approach and see science. I could not have asked for a better mentor. Secondly, I would like to thank my committee members for all of their great ideas and their never-ending support. I thank them for answering all of my questions so patiently and always listening to what I had to say. After every meeting I’ve had with them, I always felt encouraged and confident. I would also like to thank my collaborators over at the University of Washington—Justin Kollman, Anika Burrell, and Matthew Johnson. It has been such a pleasure working with them. The journey of discovery that we took together has been very exciting. This was my first collaboration, and they have made it such a memorable and positive experience. iii I would like to thank my lab members, in particular Alex for being an awesome cubemate, colleague, and friend. He has been the sounding board for so many of my project’s ideas over the years and has given such knowledgeable input.
    [Show full text]