U 1. Uracil. 2. Uridine. 3. Enzyme Unit. 4. Uranium. 5. Uniformly Labeled. Ul
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35 Disorders of Purine and Pyrimidine Metabolism
35 Disorders of Purine and Pyrimidine Metabolism Georges van den Berghe, M.- Françoise Vincent, Sandrine Marie 35.1 Inborn Errors of Purine Metabolism – 435 35.1.1 Phosphoribosyl Pyrophosphate Synthetase Superactivity – 435 35.1.2 Adenylosuccinase Deficiency – 436 35.1.3 AICA-Ribosiduria – 437 35.1.4 Muscle AMP Deaminase Deficiency – 437 35.1.5 Adenosine Deaminase Deficiency – 438 35.1.6 Adenosine Deaminase Superactivity – 439 35.1.7 Purine Nucleoside Phosphorylase Deficiency – 440 35.1.8 Xanthine Oxidase Deficiency – 440 35.1.9 Hypoxanthine-Guanine Phosphoribosyltransferase Deficiency – 441 35.1.10 Adenine Phosphoribosyltransferase Deficiency – 442 35.1.11 Deoxyguanosine Kinase Deficiency – 442 35.2 Inborn Errors of Pyrimidine Metabolism – 445 35.2.1 UMP Synthase Deficiency (Hereditary Orotic Aciduria) – 445 35.2.2 Dihydropyrimidine Dehydrogenase Deficiency – 445 35.2.3 Dihydropyrimidinase Deficiency – 446 35.2.4 Ureidopropionase Deficiency – 446 35.2.5 Pyrimidine 5’-Nucleotidase Deficiency – 446 35.2.6 Cytosolic 5’-Nucleotidase Superactivity – 447 35.2.7 Thymidine Phosphorylase Deficiency – 447 35.2.8 Thymidine Kinase Deficiency – 447 References – 447 434 Chapter 35 · Disorders of Purine and Pyrimidine Metabolism Purine Metabolism Purine nucleotides are essential cellular constituents 4 The catabolic pathway starts from GMP, IMP and which intervene in energy transfer, metabolic regula- AMP, and produces uric acid, a poorly soluble tion, and synthesis of DNA and RNA. Purine metabo- compound, which tends to crystallize once its lism can be divided into three pathways: plasma concentration surpasses 6.5–7 mg/dl (0.38– 4 The biosynthetic pathway, often termed de novo, 0.47 mmol/l). starts with the formation of phosphoribosyl pyro- 4 The salvage pathway utilizes the purine bases, gua- phosphate (PRPP) and leads to the synthesis of nine, hypoxanthine and adenine, which are pro- inosine monophosphate (IMP). -
The Nutrition and Food Web Archive Medical Terminology Book
The Nutrition and Food Web Archive Medical Terminology Book www.nafwa. -
Utilisation Des Cellules Souches Pluripotentes Pour Le Criblage À Haut Débit De Molécules Thérapeutiques
Utilisation des cellules souches pluripotentes pour le criblage à haut débit de molécules thérapeutiques dans la maladie de Lesch-Nyhan : 2019SACLE011 NNT Thèse de doctorat de l'Université Paris-Saclay, préparée à l’Université d’Evry Val-d’Essonne École doctorale n°569 Innovation thérapeutique : du fondamental à l’appliqué (ITFA) Spécialité de doctorat: Immunologie Thèse présentée et soutenue à Corbeil-Essonnes, le 01 juillet 2019, par Valentin Ruillier Composition du Jury : Dr. Olivier Goureau Institut de la Vision, Université Sorbonne, Paris Président Pr. Odile Boespflug-Tanguy Université Paris Diderot, Hôpital Robert Debré, Paris Rapporteur Dr. Amélie Piton IGBMC, Hôpitaux Universitaires de Strasbourg Rapporteur Dr. Terence Beghyn APTEEUS, Lille Examinateur Pr. Christelle Monville UEVE/INSERM U861, I-STEM, Corbeil-Essonnes Directeur de thèse Dr. Alexandra Benchoua CECS, I-STEM, Corbeil-Essonnes Co-Encadrant Résumé - Abstract Mots clés : Maladie de Lesch-Nyhan, cellules souches pluripotentes, iPSC, criblage à haut débit, HGPRT, purines Résumé : Les mutations affectant la fonction identifier, par une approche de criblage à haut d’enzymes impliquées dans le cycle des purines débit, de nouvelles molécules chimiques capables sont responsables d’une multitude de syndromes de corriger ces défauts. Plus de 3000 molécules pédiatriques, caractérisés par des atteintes ont été testées et 6 composés, tous dérivés de neurologiques et comportementales. A ce jour, l’adénosine, ont pu être identifiés comme aucune stratégie thérapeutique n’a été compensant le métabolisme par un mécanisme réellement efficace pour contrôler ces d’action indépendant de l’HGPRT. De manière symptômes. La maladie de Lesch-Nyhan (MLN), intéressante, un des composés, la S- associée à la perte de fonction de l’enzyme de adenosylmethionine (SAM) a par le passé déjà recyclage HGPRT, constitue un bon modèle démontré des effets bénéfiques sur les d’étude. -
Reconstituted IMPDH Polymers Accommodate Both Catalytically Active and Inactive Conformations
M BoC | BRIEF REPORT Reconstituted IMPDH polymers accommodate both catalytically active and inactive conformations Sajitha A. Anthonya,†, Anika L. Burrellb,†, Matthew C. Johnsonb, Krisna C. Duong-Lya, Yin-Ming Kuoa, Jacqueline C. Simoneta, Peter Michenerc, Andrew Andrewsa, Justin M. Kollmanb,†,*, and Jeffrey R. Petersona,†,* aCancer Biology Program, Fox Chase Cancer Center, Philadelphia, PA 19111; bDepartment of Biochemistry, University of Washington, Seattle, WA 98195; cDepartment of Biochemistry & Molecular Biology, Drexel University College of Medicine, Philadelphia, PA 19102 ABSTRACT Several metabolic enzymes undergo reversible polymerization into macromo- Monitoring Editor lecular assemblies. The function of these assemblies is often unclear, but in some cases they Diane Barber regulate enzyme activity and metabolic homeostasis. The guanine nucleotide biosynthetic University of California, San Francisco enzyme inosine monophosphate dehydrogenase (IMPDH) forms octamers that polymerize into helical chains. In mammalian cells, IMPDH filaments can associate into micron-length Received: Apr 25, 2017 assemblies. Polymerization and enzyme activity are regulated in part by binding of purine Revised: Aug 2, 2017 nucleotides to an allosteric regulatory domain. ATP promotes octamer polymerization, Accepted: Aug 4, 2017 whereas guanosine triphosphate (GTP) promotes a compact, inactive conformation whose ability to polymerize is unknown. Also unclear is whether polymerization directly alters IMPDH catalytic activity. To address this, we identified point mutants of human IMPDH2 that either prevent or promote polymerization. Unexpectedly, we found that polymerized and nonassembled forms of recombinant IMPDH have comparable catalytic activity, substrate affinity, and GTP sensitivity and validated this finding in cells. Electron microscopy revealed that substrates and allosteric nucleotides shift the equilibrium between active and inactive conformations in both the octamer and the filament. -
A Comparative Study of Purinoceptors in Some Invertebrates and Vertebrates
A COMPARATIVE STUDY OF PURINOCEPTORS IN SOME INVERTEBRATES AND VERTEBRATES by Gillian Elizabeth Knight G.l.Biol Department Of Anatomy and Centre for Neuroscience, University College London, Gower Street, London WCIE 6BT Thesis submitted for the degree of Doctor of Philosophy University of London ProQuest Number: 10017490 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. uest. ProQuest 10017490 Published by ProQuest LLC(2016). Copyright of the Dissertation is held by the Author. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. Microform Edition © ProQuest LLC. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 ABSTRACT The main objective of this thesis has been to identify and characterise responses to purine compounds in a variety of invertebrates and lower vertebrates, and to examine whether they act on receptors that resemble the purinoceptor subtypes established in mammals. Tissues were chosen largely from the gastrointestinal or cardiovascular systems. In mammalian systems adenosine and adenosine 5 ’-triphosphate (ATP) activate separate classes of purinoceptors; this also appears to be true for tissues in most invertebrate groups, but there are exceptions, for instance the hearts of the snail Helix aspeTsa, and slug Avion atev, and the snail rectum all possess purinoceptors that do not appear to distinguish the purine nucleosides from nucleotides. -
Small Elevations of Glucose Concentration Redirect and Amplify the Synthesis of Guanosine 5'-Triphosphate in Rat Islets
Small elevations of glucose concentration redirect and amplify the synthesis of guanosine 5'-triphosphate in rat islets. S A Metz, … , M E Rabaglia, A Kowluru J Clin Invest. 1993;92(2):872-882. https://doi.org/10.1172/JCI116662. Research Article Recent studies suggest a permissive requirement for guanosine 5'-triphosphate (GTP) in insulin release, based on the use of GTP synthesis inhibitors (such as myocophenolic acid) acting at inosine monophosphate (IMP) dehydrogenase; herein, we examine the glucose dependency of GTP synthesis. Mycophenolic acid inhibited insulin secretion equally well after islet culture at 7.8 or 11.1 mM glucose (51% inhibition) but its effect was dramatically attenuated when provided at < or = 6.4 mM glucose (13% inhibition; P < 0.001). These observations were explicable by a stimulation of islet GTP synthesis derived from IMP since, at high glucose: (a) total GTP content was augmented; (b) a greater decrement in GTP (1.75 vs. 1.05 pmol/islet) was induced by mycophenolic acid; and (c) a smaller "pool" of residual GTP persisted after drug treatment. Glucose also accelerated GTP synthesis from exogenous guanine ("salvage" pathway) and increased content of a pyrimidine, uridine 5'-triphosphate (UTP), suggesting that glucose augments production of a common regulatory intermediate (probably 5-phosphoribosyl-1-pyrophosphate). Pathway-specific radiolabeling studies confirmed that glucose tripled both salvage and de novo synthesis of nucleotides. We conclude that steep changes in the biosynthesis of cytosolic pools of GTP occur at modest changes in glucose concentrations, a finding which may have relevance to the adaptive (patho) physiologic responses of islets to changes in ambient glucose levels. -
Variations in Bacterial Adenosine Triphosphate Values Due to Genus and Environmental Conditions
VARIATIONS IN BACTERIAL ADENOSINE TRIPHOSPHATE VALUES DUE TO GENUS AND ENVIRONMENTAL CONDITIONS by Ruann Knox Hampson Thesis submitted to the Faculty of the Virginia Polytechnic Institute and State University in partial fulfillment of the requirements for the degree of Master of Science in Food Science and Technology APPROVED: M. D. Pierson, Chairman J. K. Palmer A. A. Yousten December, 1986 Blacksburg, Virginia VARIATIONS IN BACTERIAL ADENOSINE TRIPOSPHATE VALUES DUE TO GENUS AND ENVIRONMENTAL CONDITIONS by Ruann Knox Hampson Committee Chairman: Merle D. Pierson Food Science and Technology (ABSTRACT) Variations in ATP content in three ground beef spoilage bacteria, Lactobacillus brevis, Lactobacillus jensenii, and Pseudomonas sp. were investigated using the bioluminescence (luciferin-luciferase) assay. Environmental factors (temperature, atmosphere, pH, aeration, and phase of growth), as well as differences among genera and species, were studied in relation to their effect on cellular ATP. Variations for each of the environmental factors and bacteria were shown statistically to be significantly different at the 0.05 level. The mean ATP/cell for each of the bacteria was 2.71 fg/cell (1..:_ brevis), 2.20 fg/cell (1..:_ jensenii), and 1.36 fg/cell (Pseudomonas sp.). For all three bacteria, ATP/cell was lower and more stable throughout the culture's growth cycle at 3°c or in N2 . In general, ATP/cell increases from a lowest value in lag phase to a highest value in stationary phase. The effect of sonication on ATP/cell was tested for each bacterium at one set of factors. Sonication studies showed that L. brevis cells were clumping, especially in aged cultures. -
Nucleotide Metabolism Pathway: the Achilles' Heel for Bacterial Pathogens
REVIEW ARTICLES Nucleotide metabolism pathway: the achilles’ heel for bacterial pathogens Sujata Kumari1,2,* and Prajna Tripathi1,3 1National Institute of Immunology, New Delhi 110 067, India 2Present address: Department of Zoology, Magadh Mahila College, Patna University, Patna 800 001, India 3Present address: Institute of Molecular Medicine, Jamia Hamdard, New Delhi 110 062, India de novo pathway, the nucleotides are synthesized from Pathogens exploit their host to extract nutrients for their survival. They occupy a diverse range of host simple precursor molecules. In the salvage pathway, the niches during infection which offer variable nutrients preformed nucleobases or nucleosides which are present accessibility. To cause a successful infection a patho- in the cell or transported from external environmental gen must be able to acquire these nutrients from the milieu to the cell are utilized to form nucleotides. host as well as be able to synthesize the nutrients on its own, if required. Nucleotides are the essential me- tabolite for a pathogen and also affect the pathophysi- Purine biosynthesis pathway ology of infection. This article focuses on the role of nucleotide metabolism of pathogens during infection The purine biosynthesis pathway is universally conserved in a host. Nucleotide metabolism and disease pathoge- in living organisms (Figure 1). As an example, we here nesis are closely related in various pathogens. Nucleo- present the pathway derived from well-studied Gram- tides, purines and pyrimidines, are biosynthesized by positive bacteria Lactococcus lactis. In the de novo the de novo and salvage pathways. Whether the patho- pathway the purine nucleotides are synthesized from sim- gen will employ the de novo or salvage pathway dur- ple molecules such as phosphoribosyl pyrophosphate ing infection is dependent on various factors, like (PRPP), amino acids, CO2 and NH3 by a series of enzy- availability of nucleotides, energy condition and pres- matic reactions. -
Purine and Pyrimidine Biosynthesis
Biosynthesis of Purine & Pyrimidi ne Introduction Biosynthesis is a multi-step, enzyme-catalyzed process where substrates are converted into more complex products in living organisms. In biosynthesis, simple compounds are modified, converted into other compounds, or joined together to form macromolecules. This process often consists of metabolic pathways. The purines are built upon a pre-existing ribose 5- phosphate. Liver is the major site for purine nucleotide synthesis. Erythrocytes, polymorphonuclear leukocytes & brain cannot produce purines. Pathways • There are Two pathways for the synthesis of nucleotides: 1. De-novo synthesis: Biochemical pathway where nucleotides are synthesized from new simple precursor molecules 2. Salvage pathway: Used to recover bases and nucleotides formed during the degradation of RNA and DNA. Step involved in purine biosynthesis (Adenine & Guanine) • Ribose-5-phosphate, of carbohydrate metabolism is the starting material for purine nucleotide synthesis. • It reacts with ATP to form phosphoribosyl pyrophosphate (PRPP). • Glutamine transfers its amide nitrogen to PRPP to replace pyrophosphate & produce 5- phosphoribosylamine. Catalysed by PRPP glutamyl amidotransferase. • This reaction is the committed. • Phosphoribosylamine reacts with glycine in the presence of ATP to form glycinamide ribosyl 5- phosphate or glycinamide ribotide (GAR).Catalyzed by synthetase. • N10-Formyl tetrahydrofolate donates the formyl group & the product formed is formylglycinamide ribosyl 5-phosphate. Catalyzed by formyltransferase. • Glutamine transfers the second amido amino group to produce formylglycinamidine ribosyl 5- phosphate. Catalyzed by synthetase. • The imidazole ring of the purine is closed in an ATP dependent reaction to yield 5- aminoimidazole ribosyl 5-phosphate. Catalyzed by synthetase. • Incorporation of CO2 (carboxylation) occurs to yield aminoimidazole carboxylate ribosyl 5- phosphate. -
Etude Des Mécanismes Pathogéniques De La Maladie De Lesch-Nyhan En Relation Avec Le Système Dopaminergique Chez Un Organisme
Etude des mécanismes pathogéniques de la maladie de Lesch-Nyhan en relation avec le système dopaminergique chez un organisme modèle, Drosophila melanogaster Celine Petitgas To cite this version: Celine Petitgas. Etude des mécanismes pathogéniques de la maladie de Lesch-Nyhan en relation avec le système dopaminergique chez un organisme modèle, Drosophila melanogaster. Neurosciences [q-bio.NC]. Université Paris sciences et lettres, 2019. Français. NNT : 2019PSLET049. tel-03275312 HAL Id: tel-03275312 https://pastel.archives-ouvertes.fr/tel-03275312 Submitted on 1 Jul 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. i Remerciements « Tout seul on va plus vite, ensemble on va plus loin » disait un proverbe africain. En effet, ces travaux de thèse n’auraient jamais été réalisés sans la collaboration et le soutien d’un certain nombre de personnes qui ont contribué, de près ou de loin, à l’aboutissement de ce projet, et que je me dois de remercier chaleureusement. J’aimerais tout d’abord adresser mes sincères remerciements à mon directeur de thèse, le Dr. Serge Birman, pour avoir accepté de superviser mon travail durant ces quatre années. Ce projet n’aurait jamais vu le jour sans votre implication à la fin de mon Master, et j’en suis pleinement reconnaissante. -
Probing the Base Stacking Contributions During
PROBING THE BASE STACKING CONTRIBUTIONS DURING TRANSLESION DNA SYNTHESIS by BABHO DEVADOSS Submitted in partial fulfillment of the requirements For the degree of Doctor of Philosophy Thesis Adviser: Dr. Irene Lee Department of Chemistry CASE WESTERN RESERVE UNIVERSITY January, 2009 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of _____________________________________________________ candidate for the ______________________degree *. (signed)_______________________________________________ (chair of the committee) ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ (date) _______________________ *We also certify that written approval has been obtained for any proprietary material contained therein. ii TABLE OF CONTENTS Title Page…………………………………………………………………………………..i Committee Sign-off Sheet………………………………………………………………...ii Table of Contents…………………………………………………………………………iii List of Tables…………………………………………………………………………….vii List of Figures…………………………………………………………………….………ix Acknowledgements…………………………………………………………….………..xiv List of Abbreviations…………………………………………………………….………xv Abstract………………………………………………………………………………….xix CHAPTER 1 Introduction…………………………………………………………………1 1.1 The Chemistry and Biology of DNA…………………………………………2 1.2 DNA Synthesis……………………………………………………………….6 1.3 Structural Features of DNA Polymerases…………………………………...11 -
190323111.Pdf
Characterization of polymers of nucleotide biosynthetic enzymes By Sajitha Anthony April, 2017 A dissertation presented to the faculty of Drexel University College of Medicine in partial fulfillment for the requirements for the degree of Doctor of Philosophy in Molecular and Cellular Biology and Genetics i ii ACKNOWLEDGEMENTS First and foremost, I would like to thank my mentor Dr. Jeffrey Peterson for all of his support and guidance throughout the five years that I have been in his lab. He has truly inspired me with his tremendous enthusiasm for science and his constant encouragement. He has changed, for the better, the way I approach and see science. I could not have asked for a better mentor. Secondly, I would like to thank my committee members for all of their great ideas and their never-ending support. I thank them for answering all of my questions so patiently and always listening to what I had to say. After every meeting I’ve had with them, I always felt encouraged and confident. I would also like to thank my collaborators over at the University of Washington—Justin Kollman, Anika Burrell, and Matthew Johnson. It has been such a pleasure working with them. The journey of discovery that we took together has been very exciting. This was my first collaboration, and they have made it such a memorable and positive experience. iii I would like to thank my lab members, in particular Alex for being an awesome cubemate, colleague, and friend. He has been the sounding board for so many of my project’s ideas over the years and has given such knowledgeable input.