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2019 ASEAN-FEN 9Th International Fisheries Symposium BOOK of ABSTRACTS
2019 ASEAN-FEN 9th International Fisheries Symposium BOOK OF ABSTRACTS A New Horizon in Fisheries and Aquaculture Through Education, Research and Innovation 18-21 November 2019 Seri Pacific Hotel Kuala Lumpur Malaysia Contents Oral Session Location… .................................................................... 1 Poster Session ...................................................................................... 2 Special Session… ................................................................................ 3 Special Session 1: ....................................................................... 4 Special Session 2: ..................................................................... 10 Special Session 3: ..................................................................... 16 Oral Presentation… ......................................................................... 26 Session 1: Fisheries Biology and Resource Management 1 ………………………………………………………………….…...27 Session 2: Fisheries Biology and Resource Management 2 …………………………………………………………...........….…62 Session 3: Nutrition and Feed........................................................ 107 Session 4: Aquatic Animal Health ................................................ 146 Session 5: Fisheries Socio-economies, Gender, Extension and Education… ..................................................................................... 196 Session 6: Information Technology and Engineering .................. 213 Session 7: Postharvest, Fish Products and Food Safety… ......... 219 Session -
Respiratory Disorders of Fish
This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/copyright Author's personal copy Disorders of the Respiratory System in Pet and Ornamental Fish a, b Helen E. Roberts, DVM *, Stephen A. Smith, DVM, PhD KEYWORDS Pet fish Ornamental fish Branchitis Gill Wet mount cytology Hypoxia Respiratory disorders Pathology Living in an aquatic environment where oxygen is in less supply and harder to extract than in a terrestrial one, fish have developed a respiratory system that is much more efficient than terrestrial vertebrates. The gills of fish are a unique organ system and serve several functions including respiration, osmoregulation, excretion of nitroge- nous wastes, and acid-base regulation.1 The gills are the primary site of oxygen exchange in fish and are in intimate contact with the aquatic environment. In most cases, the separation between the water and the tissues of the fish is only a few cell layers thick. Gills are a common target for assault by infectious and noninfectious disease processes.2 Nonlethal diagnostic biopsy of the gills can identify pathologic changes, provide samples for bacterial culture/identification/sensitivity testing, aid in fungal element identification, provide samples for viral testing, and provide parasitic organisms for identification.3–6 This diagnostic test is so important that it should be included as part of every diagnostic workup performed on a fish. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Detection and Identification of Fish Pathogens: What Is the Future?
The Israeli Journal of Aquaculture – Bamidgeh 60(4), 2008, 213-229. 213 Detection and Identification of Fish Pathogens: What is the Future? A Review I. Frans1,2†, B. Lievens1,2*†, C. Heusdens1,2 and K.A. Willems1,2 1 Scientia Terrae Research Institute, B-2860 Sint-Katelijne-Waver, Belgium 2 Research Group Process Microbial Ecology and Management, Department Microbial and Molecular Systems, Katholieke Universiteit Leuven Association, De Nayer Campus, B-2860 Sint-Katelijne-Waver, Belgium, and Leuven Food Science and Nutrition Research Centre (LfoRCe), Katholieke Universiteit Leuven, B-3001 Heverlee-Leuven, Belgium (Received 1.8.08, Accepted 20.8.08) Key words: biosecurity, diagnosis, DNA array, multiplexing, real-time PCR Abstract Fish diseases pose a universal threat to the ornamental fish industry, aquaculture, and public health. They can be caused by many organisms, including bacteria, fungi, viruses, and protozoa. The lack of rapid, accurate, and reliable means of detecting and identifying fish pathogens is one of the main limitations in fish pathogen diagnosis and disease management and has triggered the search for alternative diagnostic techniques. In this regard, the advent of molecular biology, especially polymerase chain reaction (PCR), provides alternative means for detecting and iden- tifying fish pathogens. Many techniques have been developed, each requiring its own protocol, equipment, and expertise. A major challenge at the moment is the development of multiplex assays that allow accurate detection, identification, and quantification of multiple pathogens in a single assay, even if they belong to different superkingdoms. In this review, recent advances in molecular fish pathogen diagnosis are discussed with an emphasis on nucleic acid-based detec- tion and identification techniques. -
Table S5. the Information of the Bacteria Annotated in the Soil Community at Species Level
Table S5. The information of the bacteria annotated in the soil community at species level No. Phylum Class Order Family Genus Species The number of contigs Abundance(%) 1 Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus 1749 5.145782459 2 Bacteroidetes Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sedentarius 1538 4.52499338 3 Gemmatimonadetes Gemmatimonadetes Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonesis 1020 3.000970902 4 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas indica 797 2.344876284 5 Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus piscium 542 1.594633558 6 Actinobacteria Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei 471 1.385742446 7 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas taxi 430 1.265115184 8 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii 388 1.141545794 9 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. FARSPH 298 0.876754244 10 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sorangium cellulosum 260 0.764953367 11 Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae Sorangium Sphingomonas sp. Cra20 260 0.764953367 12 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas panacis 252 0.741416341 -
AQUATIC SCIENCES and ENGINEERING
AQUATIC SCIENCES and ENGINEERING VOLUME: 33 ISSUE: 3 2018 EISSN 2602-473X AQUATIC SCIENCES and ENGINEERING OWNER OF JOURNAL INTERNATIONAL EDITORIAL BOARD İstanbul University Faculty of Aquatic Sciences Prof. Genario Belmonte University of Salento, Italy EDITOR IN CHIEF Prof. Carsten Harms Prof. Devrim Memiş Applied University Bremerhaven, Germany İstanbul University Faculty of Aquatic Sciences, Turkey Prof. Konstantinos Kormas University of Thessaly, Greece DEAN Prof. Sergi Sabater Prof. Dr. Meriç Albay Institute of Aquatic Ecology, Spain Prof. Maya Petrova Stoyneva-Gaertner CO EDITOR IN CHIEF Sofia University “St Kliment Ohridski”, Bulgaria Prof. Özkan Özden Prof. Nuray Erkan İstanbul University Faculty of Aquatic Sciences, Turkey İstanbul University Faculty of Aquatic Sciences, Turkey LANGUAGE EDITOR Prof. Reyhan Akçaalan İstanbul University Faculty of Aquatic Sciences, Turkey Joanne Bates Department of Foreign Languages, İstanbul University, Prof. Saadet Karakulak İstanbul, Turkey İstanbul University Faculty of Aquatic Sciences, Turkey Prof. Sühendan Mol Tokay İstanbul University Faculty of Aquatic Sciences, Turkey Assoc. Prof. Lukas Kalous Czech University of Life Sciences, Czech Dr. Klaus Kohlmann Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Germany Dr. Piero Addis University of Cagliari, Italy Dr. Nico Salmaso Research and Innovation Centre, Italy Dr. Petra Viser University of Amsterdam, Netherlands Publisher Copyright © 2018 İstanbul University Press Journal Adress: İstanbul University Faculty Aquatic Sciences, Ordu Caddesi No:8 34134 Laleli Fatih/İstanbul Turkey E-mail: [email protected] for submussion instructions, subcription and all other information visit http://dergipark.gov.tr/tjas Publication Services Publisher Publication Coordinators Graphics Department İbrahim KARA Betül ÇİMEN Ünal ÖZER Özlem ÇAKMAK Neslihan YAMAN Publication Director Ali ŞAHİN Okan AYDOĞAN Deniz DURAN Merve SAĞLAMER Finance and Administration İrem DELİÇAY Contact Zeynep YAKIŞIRER Elif İLKKURŞUN Address: Büyükdere Cad. -
Assessing Disease Impacts of Hatcheries on Downstream Salmonids in the Willamette River Basin, Oregon
AN ABSTRACT OF THE THESIS OF Michelle Jakaitis for the degree of Master of Science in Microbiology presented on November 4th, 2014. Title: Assessing Disease Impacts of Hatcheries on Downstream Salmonids in the Willamette River Basin, Oregon. Abstract approved: ____________________________________________________________ Jerri L. Bartholomew Hatcheries are often perceived as a source of pathogen amplification, potentially increasing disease risk to free-ranging populations; at the same time, free-ranging fishes may introduce pathogens into hatcheries through untreated water sources. Many pathogens exist naturally within the environment (with the exception of introduced pathogens) and the presence of a pathogen does not guarantee infection or disease (Naish, Taylor III, Levin, Quinn, Winton, Huppert & Hilborn 2007). Infections can be acute, chronic, or asymptomatic, fish may die, recover, or become carriers (Naish et al. 2007), and pathogens may be shed from any of these stages (Scottish Executive 2002). Most salmon and trout hatcheries along the Willamette River Basin, Oregon, USA, utilize an untreated river water supply for their rearing ponds and release this water, untreated, back into the river. This creates a potential for waterborne pathogens present in free-ranging hosts to be transmitted through the water supply to hatchery populations. Moreover, any hatchery epizootic can amplify pathogens and release these into the water, which could have a direct impact on free- ranging populations exposed to those pathogens in hatchery effluent. The goal of this thesis was to assess transmission of the pathogens Flavobacterium columnare, F. psychrophilum, Aeromonas salmonicida, Renibacterium salmonicida, and Infectious Hematopoietic Necrosis Virus (IHNV), at selected hatcheries in the Willamette River Basin. To accomplish this, I considered historical data and hatchery-specific and pathogen-specific factors involved in transmission and disease. -
Disease of Aquatic Organisms 80:241
DISEASES OF AQUATIC ORGANISMS Vol. 80: 241–258, 2008 Published August 7 Dis Aquat Org COMBINED AUTHOR AND TITLE INDEX (Volumes 71 to 80, 2006–2008) A (2006) Persistence of Piscirickettsia salmonis and detection of serum antibodies to the bacterium in white seabass Atrac- Aarflot L, see Olsen AB et al. (2006) 72:9–17 toscion nobilis following experimental exposure. 73:131–139 Abreu PC, see Eiras JC et al. (2007) 77:255–258 Arunrut N, see Kiatpathomchai W et al. (2007) 79:183–190 Acevedo C, see Silva-Rubio A et al. (2007) 79:27–35 Arzul I, see Carrasco N et al. (2007) 79:65–73 Adams A, see McGurk C et al. (2006) 73:159–169 Arzul I, see Corbeil S et al. (2006) 71:75–80 Adkison MA, see Arkush KD et al. (2006) 73:131–139 Arzul I, see Corbeil S et al. (2006) 71:81–85 Aeby GS, see Work TM et al. (2007) 78:255–264 Ashton KJ, see Kriger KM et al. (2006) 71:149–154 Aguirre WE, see Félix F et al. (2006) 75:259–264 Ashton KJ, see Kriger KM et al. (2006) 73:257–260 Aguirre-Macedo L, see Gullian-Klanian M et al. (2007) 79: Atkinson SD, see Bartholomew JL et al. (2007) 78:137–146 237–247 Aubard G, see Quillet E et al. (2007) 76:7–16 Aiken HM, see Hayward CJ et al. (2007) 79:57–63 Audemard C, Carnegie RB, Burreson EM (2008) Shellfish tis- Aishima N, see Maeno Y et al. (2006) 71:169–173 sues evaluated for Perkinsus spp. -
Health Monitoring for Your Zebrafish Colonies
Discover better insight Health Monitoring for your zebrafish colonies The clear choice for a comprehensive health monitoring program. BioResearch Your partner in discovery Contents Introduction . 3 Edwardsiella ictaluri. 4 Flavobacterium columnare . 5 Ichthyophthirius multifiliis. 6 Infectious spleen and kidney necrosis virus (ISKNV) . 7 Mycobacterium abscessus . 8 Mycobacterium chelonae . .9 Mycobacterium fortuitum. 10 Mycobacterium haemophilum. 11 Mycobacterium marinum. 12 Mycobacterium peregrinum . 13 Piscinoodinium pillulare . 14 Pleistophora hyphessobryconis . 15 Pseudocapillaria tomentosa . 16 Pseudoloma neurophilia . 17 Profiles. 18 Specimen preparation and shipping . 20 Additional resources . 21 Introduction A growing number of researchers are choosing zebrafish as models for biomedical research because of the advantages zebrafish offer over other animal models for certain studies. First, their small size and ease of breeding make zebrafish relatively inexpensive to maintain, which allows researchers to perform experiments using zebrafish that would be cost prohibitive using larger animal models. Secondly, embryos are transparent, which allows easy visualization of cell and organ development and permits experimental manipulations involving DNA or mRNA injection, cell labeling and transplantation. Zebrafish are now commonly employed as models in a diverse range of bioresearch fields, such as immunology, infectious disease, cardiac and vascular disease research, chemical and drug toxicity studies, reproductive biology and cancer research to name a few. As with other vertebrate models used in research, undetected infections can alter, confound or invalidate experimental results. Therefore, it is important to develop and utilize a health monitoring program to detect infectious agents that may affect the animal and the research outcomes. IDEXX BioResearch has developed sensitive molecular diagnostic assays to improve health monitoring for zebrafish colonies. -
Identification of the Sole Resources of the Gambia
Identification of the Sole Resources of The Gambia Gambia-Senegal Sustainable Fisheries Program (Ba Nafaa) December 2011 This publication is available electronically on the Coastal Resources Center’s website at http://www.crc.uri.edu. For more information contact: Coastal Resources Center, University of Rhode Island, Narragansett Bay Campus, South Ferry Road, Narragansett, Rhode Island 02882, USA. Tel: 401) 874-6224; Fax: 401) 789-4670; Email: [email protected] The BaNafaa project is implemented by the Coastal Resources Center of the University of Rhode Island and the World Wide Fund for Nature-West Africa Marine Ecoregion (WWF-WAMER) in partnership with the Department of Fisheries and the Ministry of Fisheries, Water Resources and National Assembly Matters. Citation: Coastal Resources Center, 2011. Identification of the Sole Resources of The Gambia. Coastal Resources Center, University of Rhode Island, pp.11 Disclaimer: This report was made possible by the generous support of the American people through the United States Agency for International Development (USAID). The contents are the responsibility of the authors and do not necessarily reflect the views of USAID or the United States Government. Cooperative Agreement # 624-A-00-09- 00033-00. Cover Photo: Coastal Resources Center/URI Fisheries Center Photo Credit: Coastal Resources Center/URI Fisheries Center 2 The Sole Resources Proper identification of the species is critical for resource management. There are four major families of flatfish with representative species found in the Gambian nearshore waters: Soleidae, Cynoglossidae, Psettododae and Paralichthyidae. The species below have been confirmed through literature review, and through discussions with local fishermen, processors and the Gambian Department of Fisheries. -
Freeze-Drying of Flavobacterium Columnare, Flavobacterium Psychrophilum and Flexibacter Maritimus
DISEASES OF AQUATIC ORGANISMS Published October 17 P- Dis Aquat Org 1 - - NOTE Freeze-drying of Flavobacterium columnare, Flavobacterium psychrophilum and Flexibacter maritimus B. Desolme, J.-F. Bernardet* Equipe de Pathologie lnfectieuse et Irnrnunite des Poissons. Unite de Virologie et Immunologic Moleculaires. Cenlre de Recherches INRA. F-78352 Jouy-en-Josas Cedex. France ABSTRACT: Freeze-drying of bacteria requires the use of a laboratories studying these bacterial species, as well as cryoprotective agent. Skim milk, polyvinylpyrrolidone, dex- the culture collections, maintain numerous bacterial tran, sodiuln glutamate, sucrose, horse or calf serum are all strains using different preservation methods. For long- routinely used. The effects of 7 suspending media, each con- taining 1 of these cryoprotective additives, were studied on 3 term preservation, suspension in casitone 1% at strains each of 3 fish pathogenic gliding bacteria (Flavobac- -80°C, ultra-freezing in liquid nitrogen (-196"C), and terium columnare, Flavobacterium psychrophilum and Flex- freeze-drying are currently employed. The freeze- ibacter marjtimus). The viability of preserved bacteria was drying technique is often preferred because of its con- evaluated by colony enumerat~onon Anacker and Ordal venience for the storage and shipping of samples. The medium (Fa. columnare and Fa. psychrophilum) and on Difco marine medium 2216E (Fx.maritjmus), 48 and 72 h after inoc- efficiency of this long-term preservation procedure ulation. The data show the 3 bacterial species to be optimally depends, among other parameters, on the suspending preserved in suspending media containing D~fcoBacto Bru- method and on the cryoprotective agent included in cella Broth (2/3) supplemented with either horse or foetal calf the suspending medi.um which must be adapted to the serum (1/3). -
FAMILY Soleidae Bonaparte, 1833
FAMILY Soleidae Bonaparte, 1833 - true soles [=Soleini, Synapturiniae (Synapturinae), Brachirinae, Heteromycterina, Pardachirinae, Aseraggodinae, Aseraggodinae] Notes: Soleini Bonaparte 1833: Fasc. 4, puntata 22 [ref. 516] (subfamily) Solea Synapturniae [Synapturinae] Jordan & Starks, 1906:227 [ref. 2532] (subfamily) Synaptura [von Bonde 1922:21 [ref. 520] also used Synapturniae; stem corrected to Synaptur- by Jordan 1923a:170 [ref. 2421], confirmed by Chabanaud 1927:2 [ref. 782] and by Lindberg 1971:204 [ref. 27211]; senior objective synonym of Brachirinae Ogilby, 1916] Brachirinae Ogilby, 1916:136 [ref. 3297] (subfamily) Brachirus Swainson [junior objective synonym of Synapturinae Jordan & Starks, 1906, invalid, Article 61.3.2] Heteromycterina Chabanaud, 1930a:5, 20 [ref. 784] (section) Heteromycteris Pardachirinae Chabanaud, 1937:36 [ref. 793] (subfamily) Pardachirus Aseraggodinae Ochiai, 1959:154 [ref. 32996] (subfamily) Aseraggodus [unavailable publication] Aseraggodinae Ochiai, 1963:20 [ref. 7982] (subfamily) Aseraggodus GENUS Achiroides Bleeker, 1851 - true soles [=Achiroides Bleeker [P.], 1851:262, Eurypleura Kaup [J. J.], 1858:100] Notes: [ref. 325]. Masc. Plagusia melanorhynchus Bleeker, 1851. Type by monotypy. Apparently appeared first as Achiroïdes melanorhynchus Blkr. = Plagusia melanorhynchus Blkr." Species described earlier in same journal as P. melanorhynchus (also spelled melanorhijnchus). Diagnosis provided in Bleeker 1851:404 [ref. 6831] in same journal with second species leucorhynchos added. •Valid as Achiroides Bleeker, 1851 -- (Kottelat 1989:20 [ref. 13605], Roberts 1989:183 [ref. 6439], Munroe 2001:3880 [ref. 26314], Kottelat 2013:463 [ref. 32989]). Current status: Valid as Achiroides Bleeker, 1851. Soleidae. (Eurypleura) [ref. 2578]. Fem. Plagusia melanorhynchus Bleeker, 1851. Type by being a replacement name. Unneeded substitute for Achiroides Bleeker, 1851. •Objective synonym of Achiroides Bleeker, 1851 -- (Kottelat 2013:463 [ref.