Evolutionary Ecology of Fish Venom: Adaptations and Consequences of Evolving a Venom System
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Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011
August 2012 Indo-Pacific Division Indonesia Report No 6/12 Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011 Report Compiled By: Purwanto, Muhajir, Joanne Wilson, Rizya Ardiwijaya, and Sangeeta Mangubhai August 2012 Indo-Pacific Division Indonesia Report No 6/12 Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011 Report Compiled By: Purwanto, Muhajir, Joanne Wilson, Rizya Ardiwijaya, and Sangeeta Mangubhai Published by: TheNatureConservancy,Indo-PacificDivision Purwanto:TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia.Email: [email protected] Muhajir: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia.Email: [email protected] JoanneWilson: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia. RizyaArdiwijaya:TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur, Bali,Indonesia.Email: [email protected] SangeetaMangubhai: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2, Sanur,Bali,Indonesia.Email: [email protected] Suggested Citation: Purwanto,Muhajir,Wilson,J.,Ardiwijaya,R.,Mangubhai,S.2012.CoralReefMonitoringinKofiau andBooIslandsMarineProtectedArea,RajaAmpat,WestPapua.2009-2011.TheNature Conservancy,Indo-PacificDivision,Indonesia.ReportN,6/12.50pp. © 2012012012201 222 The Nature Conservancy AllRightsReserved.Reproductionforanypurposeisprohibitedwithoutpriorpermission. AllmapsdesignedandcreatedbyMuhajir. CoverPhoto: -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Mimicry and Defense
3/24/2015 Professor Donald McFarlane Mimicry and Defense Protective Strategies Camouflage (“Cryptic coloration”) Diverse Coloration Diversion Structures Startle Structures 2 1 3/24/2015 Camouflage (“Cryptic coloration”) Minimize 3d shape, e.g. flatfish Halibut (Hippoglossus hippoglossus) 3 4 2 3/24/2015 Counter‐Shading 5 Disruptive Coloration 6 3 3/24/2015 Polymorphism – Cepeae snails 7 Polymorphism – Oophaga granuliferus 8 4 3/24/2015 Polymorphism – 9 Polymorphism – Oophaga Geographic locations of study populations and their color patterns. (A) Map of the pacific coast of Colombia showing the three study localities: in blue Oophaga histrionica, in orange O. lehmanni, and in green the pHYB population. (B) Examples of color patterns of individuals from the pHYB population (1–4) and the pattern from a hybrid between Oophaga histrionica and O. lehmanni bred in the laboratory (H) 10 5 3/24/2015 Diversion Structures 11 Startle Structures 12 6 3/24/2015 Warning Coloration (Aposematic coloration) Advertise organism as distasteful, toxic or venomous Problem: Predators must learn by attacking prey; predator learning is costly to prey. Therefore strong selective pressure to STANDARDIZE on a few colors/patterns. This is MULLERIAN MIMICRY. Most common is yellow/black, or red/yellow/black 13 Warning Coloration (Aposematic coloration) Bumblebee (Bombus Black and yellow mangrove snake (Boiga sp.) Sand Wasp (bembix oculata) dendrophila) Yellow‐banded poison dart frog (Dendrobates leucomelas Fire salamander ( Salamandra salamandra) 14 7 3/24/2015 Warning Coloration (Aposematic coloration) coral snakes (Micrurus sp.) ~ 50 species in two families, all venomous 15 Batesian Mimicry 1862 –Henry Walter Bates; “A Naturalist on the River Amazons” 16 8 3/24/2015 Batesian Mimicry Batesian mimics “cheat” –they lack toxins, venom, etc. -
Cybernetic Camouflage on Human Recipient - Visual Illusion INTERFACE
Recent Researches in Circuits, Systems, Electronics, Control & Signal Processing Cybernetic Camouflage on Human Recipient - Visual Illusion INTERFACE JIŘÍ F. URBÁNEK, JIŘÍ BARTA, JOZEF HERETÍK, JOSEF NAVRÁTIL and JAROSLAV PRŮCHA* Department of Civil Protection, Dpt of External Relations*, University of Defence, Kounicova 65, 662 10 Brno, CZECH REPUBLIC [email protected]; http://www.unob.cz Abstract: - Perceptive interface between a human recipient (observer) and visible object can be created by complicated components, domains, actors, agents and mediators. A permeability of this interfece is necessary in an environment of colaborative actors at both sides of the interface. Worse permeability or even impermeability of the interface can be asked between antagonistic enemies. Generally, a lot of various interfaces have “smash / fuzzy/ defocusing” contours but their exact definition is helpful for active and passive protection of living objects in the nature. But, the interfaces between potential enemies ask a merge of camouflage systems & processes implementing on special created interface. So, this interface needs a nature / human made camouflage mediator. This mediator must operationally mediate virtual image in real time/ space/ environment. Cybernetic camouflage implementing virtual image operating in visible range of electromagnetic vave spectrum uses data projectors for projection of image on screen interface. From above fundamental principles are created platforms of cybernetic camouflage of Czech University of Defence R&D Grant solution of National Defence Research. It deals grant Project with acronym ADAPTIV - Draft and assertion new adaptive technology for simulation and camouflage in operational environment armed forces of Czech Republic and for infrastructure protection. The resources and “how to” of this Grant asks a finding of new approaches of problems solution, especially in military environment. -
Predatory Behavior of Jumping Spiders
Annual Reviews www.annualreviews.org/aronline Annu Rev. Entomol. 19%. 41:287-308 Copyrighl8 1996 by Annual Reviews Inc. All rights reserved PREDATORY BEHAVIOR OF JUMPING SPIDERS R. R. Jackson and S. D. Pollard Department of Zoology, University of Canterbury, Christchurch, New Zealand KEY WORDS: salticids, salticid eyes, Portia, predatory versatility, aggressive mimicry ABSTRACT Salticids, the largest family of spiders, have unique eyes, acute vision, and elaborate vision-mediated predatory behavior, which is more pronounced than in any other spider group. Diverse predatory strategies have evolved, including araneophagy,aggressive mimicry, myrmicophagy ,and prey-specific preycatch- ing behavior. Salticids are also distinctive for development of behavioral flexi- bility, including conditional predatory strategies, the use of trial-and-error to solve predatory problems, and the undertaking of detours to reach prey. Predatory behavior of araneophagic salticids has undergone local adaptation to local prey, and there is evidence of predator-prey coevolution. Trade-offs between mating and predatory strategies appear to be important in ant-mimicking and araneo- phagic species. INTRODUCTION With over 4000 described species (1 l), jumping spiders (Salticidae) compose by Fordham University on 04/13/13. For personal use only. the largest family of spiders. They are characterized as cursorial, diurnal predators with excellent eyesight. Although spider eyes usually lack the struc- tural complexity required for acute vision, salticids have unique, complex eyes with resolution abilities without known parallels in animals of comparable size Annu. Rev. Entomol. 1996.41:287-308. Downloaded from www.annualreviews.org (98). Salticids are the end-product of an evolutionary process in which a small silk-producing animal with a simple nervous system acquires acute vision, resulting in a diverse array of complex predatory strategies. -
Fishes of Terengganu East Coast of Malay Peninsula, Malaysia Ii Iii
i Fishes of Terengganu East coast of Malay Peninsula, Malaysia ii iii Edited by Mizuki Matsunuma, Hiroyuki Motomura, Keiichi Matsuura, Noor Azhar M. Shazili and Mohd Azmi Ambak Photographed by Masatoshi Meguro and Mizuki Matsunuma iv Copy Right © 2011 by the National Museum of Nature and Science, Universiti Malaysia Terengganu and Kagoshima University Museum All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means without prior written permission from the publisher. Copyrights of the specimen photographs are held by the Kagoshima Uni- versity Museum. For bibliographic purposes this book should be cited as follows: Matsunuma, M., H. Motomura, K. Matsuura, N. A. M. Shazili and M. A. Ambak (eds.). 2011 (Nov.). Fishes of Terengganu – east coast of Malay Peninsula, Malaysia. National Museum of Nature and Science, Universiti Malaysia Terengganu and Kagoshima University Museum, ix + 251 pages. ISBN 978-4-87803-036-9 Corresponding editor: Hiroyuki Motomura (e-mail: [email protected]) v Preface Tropical seas in Southeast Asian countries are well known for their rich fish diversity found in various environments such as beautiful coral reefs, mud flats, sandy beaches, mangroves, and estuaries around river mouths. The South China Sea is a major water body containing a large and diverse fish fauna. However, many areas of the South China Sea, particularly in Malaysia and Vietnam, have been poorly studied in terms of fish taxonomy and diversity. Local fish scientists and students have frequently faced difficulty when try- ing to identify fishes in their home countries. During the International Training Program of the Japan Society for Promotion of Science (ITP of JSPS), two graduate students of Kagoshima University, Mr. -
Arachnologische Mitteilungen
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Arachnologische Mitteilungen Jahr/Year: 2012 Band/Volume: 43 Autor(en)/Author(s): Chiarle Alberto, Kovarik Frantisek, Levi Lisa, Gavetti Elena Artikel/Article: The scorpion collections (Arachnida, Scorpiones) held in the Museo Regionale di Scienze Naturali of Turin (Italy) 17-23 2 © Biodiversity Heritage Library, http://www.biodiversitylibrary.org/; Arachnologische Mitteilungen 43: 17-23 Nuremberg, July 2012 The scorpion collections (Arachnida, Scorpiones) held in the Museo Regionale di Scienze Naturali of Turin (Italy) Alberto Chiarle, Frantisek Kovarik, Lisa Levi & Elena Gavetti doi;10.5431/aramit4307 Abstract: Data and considerations about the history and contents of the scorpion collection housed in the Museo Regionale di Scienze Naturali of Turin (MRSN) are reported. Information on type material and important historical specimens are provided, as well as biographical notes about the major zoologists of the museum. Key words: Borelli, MZUT, MRSN, scorpiology,Turin collection history In 1978 the public administration of the Regione the museum collections were neglected. Specimens in Piemonte founded the ‘Museo Regionale di Scienze ethanol suffered and exchanges, loans and systematic Naturali’ (MRSN) in Turin. Since 1980, the zoologi- studies on specimens were interrupted. In 1968, under cal treasures kept by the Zoological Museum of the Professor Umberto Parenti’s guidance and thanks to Turin University (MZUT) have been entrusted to the the curators, the MZUT was reorganized. MRSN. The MZUT is one of the oldest and most Since 1980 a large number of transfers have taken important Italian university museums. It was founded place involving all the collections. -
Mimicry - Ecology - Oxford Bibliographies 12/13/12 7:29 PM
Mimicry - Ecology - Oxford Bibliographies 12/13/12 7:29 PM Mimicry David W. Kikuchi, David W. Pfennig Introduction Among nature’s most exquisite adaptations are examples in which natural selection has favored a species (the mimic) to resemble a second, often unrelated species (the model) because it confuses a third species (the receiver). For example, the individual members of a nontoxic species that happen to resemble a toxic species may dupe any predators by behaving as if they are also dangerous and should therefore be avoided. In this way, adaptive resemblances can evolve via natural selection. When this phenomenon—dubbed “mimicry”—was first outlined by Henry Walter Bates in the middle of the 19th century, its intuitive appeal was so great that Charles Darwin immediately seized upon it as one of the finest examples of evolution by means of natural selection. Even today, mimicry is often used as a prime example in textbooks and in the popular press as a superlative example of natural selection’s efficacy. Moreover, mimicry remains an active area of research, and studies of mimicry have helped illuminate such diverse topics as how novel, complex traits arise; how new species form; and how animals make complex decisions. General Overviews Since Henry Walter Bates first published his theories of mimicry in 1862 (see Bates 1862, cited under Historical Background), there have been periodic reviews of our knowledge in the subject area. Cott 1940 was mainly concerned with animal coloration. Subsequent reviews, such as Edmunds 1974 and Ruxton, et al. 2004, have focused on types of mimicry associated with defense from predators. -
Reglamento De Pesca De Puerto Rico
Gobierno de Puerto Rico DEPARTAMENTO DE RECURSOS NATURALES Y AMBIENTALES PO Box 366147, San Juan, PR 00936 NUEVO REGLAMENTO DE PESCA DE PUERTO RICO Gobierno de Puerto Rico DEPARTAMENTO DE RECURSOS NATURALES Y AMBIENTALES PO Box 366147, San Juan, PR 00936 Nuevo Reglamento de Pesca de Puerto Rico CAPÍTULO I - DISPOSICIONES GENERALES ARTÍCULO 1 - TÍTULO Este Reglamento se conocerá como "Nuevo Reglamento de Pesca de Puerto Rico". ARTÍCULO 2 - AUTORIDAD Y BASE LEGAL Este Reglamento se adopta y promulga de conformidad con los poderes conferidos al Secretario del Departamento de Recursos Naturales y Ambientales por el Artículo 5 de la Ley Número 278 del 29 de noviembre de 1998 según enmendada, conocida como la “Ley de Pesquerías de Puerto Rico”; el Artículo 5 de la Ley Número 115 del 6 de septiembre de 1997, conocida como la “Ley para la Promoción y el Desarrollo de la Pesca Deportiva y Recreacional de Puerto Rico”; la Ley Número 46 del 18 de junio de 1965, conocida como la “Ley de Pirañas, Prohibición y Penas; la Ley Núm. 57 de 10 de marzo de 2000, conocida como “Para designar como reserva marina, media milla de las aguas territoriales marítimas alrededor de la Isla Desecheo”; la Ley Número 17 de 8 de enero de 2004, conocida como “Ley de la Reserva Marina Tres Palmas de Rincón”; y el Artículo 5 de la Ley Número 23 del 20 de junio de 1972, según enmendada, conocida como la Ley Orgánica del Departamento de Recursos Naturales y Ambientales. ARTÍCULO 3 - DECLARACIÓN DE PROPÓSITOS El propósito de este Reglamento es administrar las pesquerías dentro de las aguas jurisdiccionales del Gobierno de Puerto Rico. -
Coral Injuries Caused by Spirobranchus Opercula with and Without Epibiotic Turf Algae at Curaçao
Marine Biology (2019) 166:60 https://doi.org/10.1007/s00227-019-3504-6 SHORT NOTE Coral injuries caused by Spirobranchus opercula with and without epibiotic turf algae at Curaçao Bert W. Hoeksema1,2 · Dagmar Wels1 · Roeland J. van der Schoot1 · Harry A. ten Hove1 Received: 11 January 2019 / Accepted: 26 March 2019 © The Author(s) 2019 Abstract Reef-dwelling Christmas tree worms (Spirobranchus spp.) are common coral associates. Their calcareous tubes are usually embedded in the coral skeleton and can be closed by an operculum. Tubes not overgrown by coral tissue either remain bare or become covered by algae. Despite their widespread distribution, high abundance and striking appearance, little is known about the impact of these worms on their hosts. We quantifed visible coral damage caused by Spirobranchus in Curaçao (Southern Caribbean) and found that 62.6% of worm opercula (n = 1323) caused abrasions and tissue loss in their hosts. Filamentous turf algae, known to be potentially harmful to corals, covered 76.9% of the opercula. Examination of the six most frequently inhabited host species showed a variation in the damage percentages, although this was independent of the presence of epibiotic algae on 78.4% of all opercula. Since injured corals are more susceptible to diseases, the overall nega- tive impact of Spirobranchus worms on their hosts may be more severe than previously assumed. Introduction and Nishihira 1996), even if the host becomes overgrown by sponges and octocorals, which in turn can act as replacement Coral-dwelling tubeworms of the genus Spirobranchus hosts (Hoeksema et al. 2015, 2016; García-Hernández and (Polychaeta: Serpulidae), known popularly as Christmas Hoeksema 2017). -
Venom Evolution Widespread in Fishes: a Phylogenetic Road Map for the Bioprospecting of Piscine Venoms
Journal of Heredity 2006:97(3):206–217 ª The American Genetic Association. 2006. All rights reserved. doi:10.1093/jhered/esj034 For permissions, please email: [email protected]. Advance Access publication June 1, 2006 Venom Evolution Widespread in Fishes: A Phylogenetic Road Map for the Bioprospecting of Piscine Venoms WILLIAM LEO SMITH AND WARD C. WHEELER From the Department of Ecology, Evolution, and Environmental Biology, Columbia University, 1200 Amsterdam Avenue, New York, NY 10027 (Leo Smith); Division of Vertebrate Zoology (Ichthyology), American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024-5192 (Leo Smith); and Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024-5192 (Wheeler). Address correspondence to W. L. Smith at the address above, or e-mail: [email protected]. Abstract Knowledge of evolutionary relationships or phylogeny allows for effective predictions about the unstudied characteristics of species. These include the presence and biological activity of an organism’s venoms. To date, most venom bioprospecting has focused on snakes, resulting in six stroke and cancer treatment drugs that are nearing U.S. Food and Drug Administration review. Fishes, however, with thousands of venoms, represent an untapped resource of natural products. The first step in- volved in the efficient bioprospecting of these compounds is a phylogeny of venomous fishes. Here, we show the results of such an analysis and provide the first explicit suborder-level phylogeny for spiny-rayed fishes. The results, based on ;1.1 million aligned base pairs, suggest that, in contrast to previous estimates of 200 venomous fishes, .1,200 fishes in 12 clades should be presumed venomous. -
Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Summer 2016 Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes Christi Linardich Old Dominion University, [email protected] Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Biodiversity Commons, Biology Commons, Environmental Health and Protection Commons, and the Marine Biology Commons Recommended Citation Linardich, Christi. "Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes" (2016). Master of Science (MS), Thesis, Biological Sciences, Old Dominion University, DOI: 10.25777/hydh-jp82 https://digitalcommons.odu.edu/biology_etds/13 This Thesis is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES by Christi Linardich B.A. December 2006, Florida Gulf Coast University A Thesis Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE BIOLOGY OLD DOMINION UNIVERSITY August 2016 Approved by: Kent E. Carpenter (Advisor) Beth Polidoro (Member) Holly Gaff (Member) ABSTRACT HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES Christi Linardich Old Dominion University, 2016 Advisor: Dr. Kent E. Carpenter Understanding the status of species is important for allocation of resources to redress biodiversity loss.