UC Davis UC Davis Previously Published Works Title Genomics clarifies taxonomic boundaries in a difficult species complex. Permalink https://escholarship.org/uc/item/2925c2j0 Journal PloS one, 12(12) ISSN 1932-6203 Authors Baumsteiger, Jason Moyle, Peter B Aguilar, Andres et al. Publication Date 2017 DOI 10.1371/journal.pone.0189417 Peer reviewed eScholarship.org Powered by the California Digital Library University of California RESEARCH ARTICLE Genomics clarifies taxonomic boundaries in a difficult species complex Jason Baumsteiger1,2*, Peter B. Moyle1,3, Andres Aguilar4, Sean M. O'Rourke2, Michael R. Miller1,2* 1 Center for Watershed Sciences, University of California, Davis, United States of America, 2 Department of Animal Sciences, University of California, Davis, United States of America, 3 Department of Wildlife, Fisheries, and Conservation Biology, University of California, Davis, United States of America, 4 Department of Biological Sciences, California State University, Los Angeles, United States of America *
[email protected] (JB);
[email protected] (MM) a1111111111 a1111111111 Abstract a1111111111 a1111111111 Efforts to taxonomically delineate species are often confounded with conflicting information a1111111111 and subjective interpretation. Advances in genomic methods have resulted in a new approach to taxonomic identification that stands to greatly reduce much of this conflict. This approach is ideal for species complexes, where divergence times are recent (evolutionarily) and lineages less well defined. The California Roach/Hitch fish species complex is an excel- OPEN ACCESS lent example, experiencing a convoluted geologic history, diverse habitats, conflicting spe- Citation: Baumsteiger J, Moyle PB, Aguilar A, cies designations and potential admixture between species. Here we use this fish complex O'Rourke SM, Miller MR (2017) Genomics clarifies to illustrate how genomics can be used to better clarify and assign taxonomic categories.