Fish Species Currently Or Historically Present in Streams of the Napa River Basin
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LONGFIN SMELT Spirinchus Thaleichthys USFWS: None CDFG: Threatened
LSA ASSOCIATES, INC. PUBLIC DRAFT SOLANO HCP JULY 2012 SOLANO COUNTY WATER AGENCY NATURAL COMMUNITY AND SPECIES ACCOUNTS LONGFIN SMELT Spirinchus thaleichthys USFWS: None CDFG: Threatened Species Account Status and Description. The longfin smelt is listed as a threatened species by the California Fish and Game Commission. Abundance of the longfin smelt has reached record lows in the San Francisco-Delta population, and the species may already be extinct in some northern California estuarine populations, resulting in an overall threat of extinction to the species within California (Federal Register 2008). The longfin smelt was also proposed for federal listing, but on April 8, 2009 the USFWS determined that the San Francisco Bay Estuary population does not qualify for listing as a distinct population segment under federal regulations. Further assessment of the entire population is being conducted, however, and future listing may be considered. Photo courtesy of California Department of Fish and Game Longfin smelt, once mature, are slim, silver fish in the family Osmeridae (true smelts). Moyle (2002) describes the species as being 90-110 mm (standard length) at maturity, with a translucent silver appearance along the sides of the body, and an olive to iridescent pinkish hue on the back. Mature males are often darker than females, with enlarged and stiffened dorsal and anal fins, a dilated lateral line region, and breeding tubercles on paired fins and scares. Longfin smelt can be distinguished from other California smelt by their long pectoral fins (which reach or nearly reach the bases of the pelvic fins), incomplete lateral line, weak or absent striations on the opercular bones, low number of scales in the lateral line (54-65) and long maxillary bones (which in adults extent just short of the posterior margin of the eye). -
Draft Genome of the Korean Smelt Hypomesus Nipponensis and Its Transcriptomic
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.26.437215; this version posted March 28, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 2 3 Draft Genome of the Korean smelt Hypomesus nipponensis and its transcriptomic 4 responses to heat stress in the liver and muscle 5 Biao Xuan1,2, Jongbin Park1,2, Sukjung Choi2, Inhwan You1,2, Bo-Hye Nam3, Eun Soo 6 Noh3, Eun Mi Kim3, Mi-Young Song4, Younhee Shin5, Ji-Hyeon Jeon5,6 and Eun Bae 7 Kim1,2,# 8 1 Department of Applied Animal Science, College of Animal Life Sciences, Kangwon National 9 University, Chuncheon 24341, Kangwon-do, Republic of Korea 10 2 Laboratory of Microbial Genomics and Big Data, College of Animal Life Sciences, Kangwon 11 National University, Chuncheon 24341, Kangwon-do, Republic of Korea 12 3 Biotechnology Research Division, National Institute of Fisheries Science, Busan 46083, Korea 13 4 Inland Fisheries Research Institute, National Institute of Fisheries Science, Gapyeong 12453, 14 Korea 15 5 Research and Development Center, Insilicogen Inc, Yongin 16954, Republic of Korea 16 6 Department of Biological Science, Sungkyunkwan University, Suwon 16419, Korea 17 18 # Corresponding author 19 Mailing address: Department of Applied Animal Science, College of Animal Life Sciences, 20 Kangwon National University, Chuncheon 200-701, Republic of Korea. 21 Tel: +82-33-250-8642 22 Fax: +82-33-259-5574 23 E-mail: [email protected] 24 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.26.437215; this version posted March 28, 2021. -
Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Marine Fish Culture
FAU Institutional Repository http://purl.fcla.edu/fau/fauir This paper was submitted by the faculty of FAU’s Harbor Branch Oceanographic Institute. Notice: © 1998 Kluwer. This manuscript is an author version with the final publication available and may be cited as: Tucker, J. W., Jr. (1998). Marine fish culture. Boston: Kluwer Academic Publishers. MARINE FISH CULTURE by John W. Tucker, Jr., Ph.D. Harbor Branch Oceanographic Institution and Florida Institute of Technology, Melbourne KLUWER ACADEMIC PUBLISHERS Boston I Dordrecht I London Distributors for North, Central and South America: Kluwer Academic Publishers I 01 Philip Drive Assinippi Park Norwell, Massachusetts 02061 USA Telephone (781) 871-6600 Fax (781) 871-6528 E-Mail <[email protected]> Distributors for all other countries: Kluwer Academic Publishers Group Distribution Centre Post Office Box 322 3300 AH Dordrecht, THE NETHERLANDS Telephone 31 78 6392 392 Fax 31 78 6546 474 E-Mail <[email protected]> '' Electronic Services <http://www.wkap.nl> Library of Congress Cataloging-in-Publication Data Tucker, John W., 1948- Marine fish culture I by John W. Tucker, Jr. p. em. Includes bibliographical references (p. ) and index. ISBN 0-412-07151-7 (alk. paper) 1. Marine fishes. 2. Fish-culture. I. Title. SH163.T835 1998 639.3'2--dc21 98-42062 CIP Copyright © 1998 by Kluwer Academic Publishers All rights reserved. No part of this publication may be reproduced, stored in a retrieval system or transmitted in any form or by any means, mechanical, photo copying, recording, or otherwise, without the prior written permission of the publisher, Kluwer Academic Publishers, I 0 I Philip Drive, Assinippi Park, Norwell, Massachusetts 02061 Printed on acid-free paper. -
CALIFORNIA FISH and GAME ' CONSERVATION of WILDLIFE THROUGH EDUCATION'
REPRINT FROM CALIFORNIA FISH and GAME ' CONSERVATION OF WILDLIFE THROUGH EDUCATION' . VOLUME 50 APRIL 1964 NUMBER 2 ANNUAL ABUNDANCE OF YOUNG STRIPED BASS, ROCCUS SAXATILIS, IN THE SACRAMENTO- SAN JOAQUIN DELTA, CALIFORNIA' HAROLD K. CHADWICK Inland Fisheries Branch California Department of Fish and Game INTRODUCTION A reliable index of striped bass spawning success would serve two important management purposes. First, it would enable us to determine if recruitment is directly related to spawning success. If it is, we could predict important changes in the fishery three years in advance. Second, it would give insight into environmental factors responsible for good and poor year-classes. Besides increasing our understanding of the bass population, this knowledge might be used to improve recruit- ment by modifying water development plans in the Sacramento-San Joaquin Delta under the State Water Resources Development System. Fyke net samples provided the earliest information on young bass distribution (Hatton, 1940). They were not promising for estimating abundance, and subsequent sampling of eggs and larvae with plankton nets also had important limitations (Calhoun and Woodhull, 1948; Cal- houn, Woodhull, and Johnson, 1950). An exploratory survey with tow nets in the early summer of 1947 (Calhoun and Woodhull, 1948) found bass about an inch long dis- tributed throughout the lower Sacramento-San Joaquin River system except in the Sacramento River above Isleton. This suggested the best index of spawning success would be the abundance of bass about an inch long, measured by tow netting. In 1948 and 1949 extensive tow net surveys were made to measure the relative abundance of young bass in the Delta between Rio Vista and Pittsburg (Erkkila et al., 1950). -
Endangered Species
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES Tables STEPHEN T. ROSS University of California Press Berkeley Los Angeles London © 2013 by The Regents of the University of California ISBN 978-0-520-24945-5 uucp-ross-book-color.indbcp-ross-book-color.indb 1 44/5/13/5/13 88:34:34 AAMM uucp-ross-book-color.indbcp-ross-book-color.indb 2 44/5/13/5/13 88:34:34 AAMM TABLE 1.1 Families Composing 95% of North American Freshwater Fish Species Ranked by the Number of Native Species Number Cumulative Family of species percent Cyprinidae 297 28 Percidae 186 45 Catostomidae 71 51 Poeciliidae 69 58 Ictaluridae 46 62 Goodeidae 45 66 Atherinopsidae 39 70 Salmonidae 38 74 Cyprinodontidae 35 77 Fundulidae 34 80 Centrarchidae 31 83 Cottidae 30 86 Petromyzontidae 21 88 Cichlidae 16 89 Clupeidae 10 90 Eleotridae 10 91 Acipenseridae 8 92 Osmeridae 6 92 Elassomatidae 6 93 Gobiidae 6 93 Amblyopsidae 6 94 Pimelodidae 6 94 Gasterosteidae 5 95 source: Compiled primarily from Mayden (1992), Nelson et al. (2004), and Miller and Norris (2005). uucp-ross-book-color.indbcp-ross-book-color.indb 3 44/5/13/5/13 88:34:34 AAMM TABLE 3.1 Biogeographic Relationships of Species from a Sample of Fishes from the Ouachita River, Arkansas, at the Confl uence with the Little Missouri River (Ross, pers. observ.) Origin/ Pre- Pleistocene Taxa distribution Source Highland Stoneroller, Campostoma spadiceum 2 Mayden 1987a; Blum et al. 2008; Cashner et al. 2010 Blacktail Shiner, Cyprinella venusta 3 Mayden 1987a Steelcolor Shiner, Cyprinella whipplei 1 Mayden 1987a Redfi n Shiner, Lythrurus umbratilis 4 Mayden 1987a Bigeye Shiner, Notropis boops 1 Wiley and Mayden 1985; Mayden 1987a Bullhead Minnow, Pimephales vigilax 4 Mayden 1987a Mountain Madtom, Noturus eleutherus 2a Mayden 1985, 1987a Creole Darter, Etheostoma collettei 2a Mayden 1985 Orangebelly Darter, Etheostoma radiosum 2a Page 1983; Mayden 1985, 1987a Speckled Darter, Etheostoma stigmaeum 3 Page 1983; Simon 1997 Redspot Darter, Etheostoma artesiae 3 Mayden 1985; Piller et al. -
Drought and the Delta – a “Deep Dive” Into Impacts
DroughtDrought andand thethe DeltaDelta – A “Deep Dive” into Impacts – Sponsored by Drought and the Delta – A “Deep Dive” into Impacts CONTENTS Introduction: The Sacramento-San Joaquin Delta and Drought ................................3 Resource Management .....................................................................................................................................9 Case Study: Contra Costa Water District Operations ..........................................................12 Ecosystem Effects ................................................................................................................................................14 Cast Study: The Importance of Floodplains ................................................................................20 Water Quality ..........................................................................................................................................................21 Agriculture ................................................................................................................................................................26 Case Study: McCormack Sheep and Grain ....................................................................................29 Policy ..............................................................................................................................................................................31 “Drought and the Delta” Presenters: • “Drought and the Delta” Jay Lund, Director, Center for Watershed Sciences, -
Molecular Systematics of Western North American Cyprinids (Cypriniformes: Cyprinidae)
Zootaxa 3586: 281–303 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2012 · Magnolia Press Article ISSN 1175-5334 (online edition) urn:lsid:zoobank.org:pub:0EFA9728-D4BB-467E-A0E0-0DA89E7E30AD Molecular systematics of western North American cyprinids (Cypriniformes: Cyprinidae) SUSANA SCHÖNHUTH 1, DENNIS K. SHIOZAWA 2, THOMAS E. DOWLING 3 & RICHARD L. MAYDEN 1 1 Department of Biology, Saint Louis University, 3507 Laclede Avenue, St. Louis, MO 63103, USA. E-mail S.S: [email protected] ; E-mail RLM: [email protected] 2 Department of Biology and Curator of Fishes, Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602, USA. E-mail: [email protected] 3 School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA. E-mail: [email protected] Abstract The phylogenetic or evolutionary relationships of species of Cypriniformes, as well as their classification, is in a era of flux. For the first time ever, the Order, and constituent Families are being examined for relationships within a phylogenetic context. Relevant findings as to sister-group relationships are largely being inferred from analyses of both mitochondrial and nuclear DNA sequences. Like the vast majority of Cypriniformes, due to an overall lack of any phylogenetic investigation of these fishes since Hennig’s transformation of the discipline, changes in hypotheses of relationships and a natural classification of the species should not be of surprise to anyone. Basically, for most taxa no properly supported phylogenetic hypothesis has ever been done; and this includes relationships with reasonable taxon and character sampling of even families and subfamilies. -
PREHISTORIC FORAGING PATTERNS at CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA a Thesis Presented to the Faculty of the Department Of
PREHISTORIC FORAGING PATTERNS AT CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA A Thesis Presented to the Faculty of the Department of Anthropology California State University, Sacramento Submitted in partial satisfaction of the requirements for the degree of MASTER OF ARTS in Anthropology by Justin Blake Cairns SUMMER 2016 © 2016 Justin Blake Cairns ALL RIGHTS RESERVED ii PREHISTORIC FORAGING PATTERNS AT CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA A Thesis by Justin Blake Cairns Approved by: ________________________________, Committee Chair Mark E. Basgall, Ph.D. ________________________________, Second Reader Jacob L. Fisher, Ph.D. ____________________________ Date iii Student: Justin Blake Cairns I certify that this student has met the requirements for format contained in the University format manual, and that this thesis is suitable for shelving in the Library and credit is to be awarded for the thesis. __________________________________, Graduate Coordinator _______________ Jacob Fisher, Ph.D. Date Department of Anthropology iv Abstract of PREHISTORIC FORAGING PATTERNS AT CA-SAC-47 SACRAMENTO COUNTY, CALIFORNIA by Justin Blake Cairns Subsistence studies conducted on regional archaeological deposits indicate that in the Sacramento Delta, as in the rest of the Central Valley, there is a decrease in foraging efficiency during the Late Period. A recently excavated site, CA-SAC-47, provides direct evidence of subsistence strategies in the form of faunal and plant remains. This faunal assemblage is compared to direct evidence of subsistence from Delta sites SAC-42, SAC-43, SAC-65, SAC-145, and SAC-329. The results and implications of this direct evidence are used to address site variability and resource selectivity. ___________________________________, Committee Chair Mark E. -
Public Sediment / Unlock Alameda Creek
PUBLIC SEDIMENT / UNLOCK ALAMEDA CREEK WWW.RESILIENTBAYAREA.ORG ◄ BAYLANDS = LIVING INFRA STR CTY\, E' j(II( ........ • 400 +-' -L C Based on preliminary 0 analysis by SFfl. A more , detailed analysis is beinq E TIDAL MARSH conducted as part of -l/) the Healthy Watersheds l/) ro Resilient Aaylands E project (hwrb.sfei.org) +-' C QJ E "'O MUDFLAT QJ V1 SAC-SJ DELTA 0 1 Sediment supply was estimated by 'Sediment demand was estimated multiplying the current average using a mudflat soil bulK density of annual c;ediment load valuec; from 1.5 q c;ediment/rm c;oil (Brew and McKee et al. (in prep) by the number Williams :?010), a tidal marsh soil of years between 201 r and2100. bulK density ot 0.4 g sed1m ent / cm 3 c;oil (Callaway et al. :?010), and baywide mudflat and marsh area circa 2009 (BAARI vl). BAYLANDS TODAY BAYLANDS 2100 WITH 3' SLR LOW SEDIMENT SUPPLY BAYLANDS 2100 WITH 7' SLR LOW SEDIMENT SUPPLY WE MUST LOOK UPSTREAM TRIBUTARIES FEED THE BAY SONOMA CREEK NAPA RIVER PETALUMA CREEK WALNUT CREEK ALAMEDA CREEK COYOTE CREEK GUADALUPE CREEK ALAMEDA CREEK SEDIMENTSHED ALAMEDA CREEK ALAMEDA CREEK WATERSHED - 660 SQMI OAKLAND ALAMEDA CREEK WATERSHED SAN FRANCISCO SAN JOSE THE CREEK BUILT AN ALLUVIAL FAN AND FED THE BAY ALAMEDA CREEK SOUTH BAY NILES CONE ALLUVIAL FAN HIGH SEDIMENT FEEDS MARSHES TIDAL WETLANDS IT HAS BEEN LOCKED IN PLACE OVER TIME LIVERMORE PLEASANTON SUNOL UNION CITY NILES SAN MATEO BRIDGE EDEN LANDING FREMONT NEWARK LOW SEDIMENT CARGILL SALT PONDS DUMBARTON BRIDGE SEDIMENT FLOWS ARE HIGHLY MODIFIED SEDIMENT IS STUCK IN CHANNEL IMPOUNDED BY DAMS UPSTREAM REDUCED SUPPLY TO THE BAY AND VULNERABILITIES ARE EXACERBATED BY CLIMATE CHANGE EROSION SUBSIDENCE SEA LEVEL RISE THE FLOOD CONTROL CHANNEL SAN MATEO BRIDGE UNION CITY NILES RUBBER DAMS BART WEIR EDEN LANDING PONDS HEAD OF TIDE FREMONT 880 NEWARK TIDAL EXTENT FLUVIAL EXTENT DUMBARTON BRIDGE. -
LATE MIOCENE FISHES of the CACHE VALLEY MEMBER, SALT LAKE FORMATION, UTAH and IDAHO By
LATE MIOCENE FISHES OF THE CACHE VALLEY MEMBER, SALT LAKE FORMATION, UTAH AND IDAHO by PATRICK H. MCCLELLAN AND GERALD R. SMITH MISCELLANEOUS PUBLICATIONS MUSEUM OF ZOOLOGY, UNIVERSITY OF MICHIGAN, 208 Ann Arbor, December 17, 2020 ISSN 0076-8405 P U B L I C A T I O N S O F T H E MUSEUM OF ZOOLOGY, UNIVERSITY OF MICHIGAN NO. 208 GERALD SMITH, Editor The publications of the Museum of Zoology, The University of Michigan, consist primarily of two series—the Miscellaneous Publications and the Occasional Papers. Both series were founded by Dr. Bryant Walker, Mr. Bradshaw H. Swales, and Dr. W. W. Newcomb. Occasionally the Museum publishes contributions outside of these series. Beginning in 1990 these are titled Special Publications and Circulars and each is sequentially numbered. All submitted manuscripts to any of the Museum’s publications receive external peer review. The Occasional Papers, begun in 1913, serve as a medium for original studies based principally upon the collections in the Museum. They are issued separately. When a sufficient number of pages has been printed to make a volume, a title page, table of contents, and an index are supplied to libraries and individuals on the mailing list for the series. The Miscellaneous Publications, initiated in 1916, include monographic studies, papers on field and museum techniques, and other contributions not within the scope of the Occasional Papers, and are published separately. Each number has a title page and, when necessary, a table of contents. A complete list of publications on Mammals, Birds, Reptiles and Amphibians, Fishes, I nsects, Mollusks, and other topics is available.