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ESTUDIO DE LA MICOBIOTA ENDOFÍTICA ASOCIADA a LAS GRAMÍNEAS Dactylis Glomerata, Holcus Lanatus, Ammophila Arenaria Y Elymus Farctus
UNIVERSIDAD DE SALAMANCA FACULTAD DE BIOLOGÍA DEPARTAMENTO DE MICROBIOLOGÍA Y GENÉTICA ESTUDIO DE LA MICOBIOTA ENDOFÍTICA ASOCIADA A LAS GRAMÍNEAS Dactylis glomerata, Holcus lanatus, Ammophila arenaria y Elymus farctus Mª Salud Sánchez Márquez 2009 DR. ÍÑIGO ZABALGOGEAZCOA GONZÁLEZ, CIENTÍFICO TITULAR DEL CONSEJO SUPERIOR DE INVESTIGACIONES CIENTÍFICAS (CSIC), EN EL INSTITUTO DE RECURSOS NATURALES Y AGROBIOLOGÍA DE SALAMANCA, CERTIFICA Que la memoria titulada “ESTUDIO DE LA MICOBIOTA ENDOFÍTICA ASOCIADA A LAS GRAMÍNEAS Dactylis glomerata, Holcus lanatus, Ammophila arenaria y Elymus farctus”, presentada por Dña. Mª Salud Sánchez Márquez para optar al grado de Doctora en Ciencias Biológicas por la Universidad de Salamanca, ha sido realizada bajo mi dirección, en el Departamento de Estrés Abiótico del Instituto de Recursos Naturales y Agrobiología de Salamanca del Consejo Superior de Investigaciones Científicas (CSIC). Y para autorizar su presentación y evaluación por el tribunal correspondiente, expide y firma el presente certificado en Salamanca, a 20 de febrero de 2009. Fdo. Dr. Iñigo Zabalgogeazcoa González ÍNDICE Página 1. INTRODUCCIÓN ……………………………………………………………….. 7 1.1. Aspectos históricos de la investigación sobre hongos endofíticos …………... 10 1.2. Epichloë y Neotyphodium, los hongos endofíticos sistémicos de gramíneas .. 12 1.2.1. Ciclos de vida de Epichloë y Neotyphodium ………………………... 13 1.2.2. Efectos beneficiosos de Epichloë y Neotyphodium …………………. 16 1.2.3. Efectos perjudiciales de los endofitos en el ganado …………………. 18 1.3. Hongos endofíticos no Epichloë …………………………………………….. 19 1.3.1. Abundancia y diversidad taxonómica ………………………………... 20 1.3.2. Especificidad de tejidos ………………………………………………. 21 1.3.3. Especificidad por el hospedador ……………………………………… 22 1.3.4. Transmisión …………………………………………………………... 23 1.3.5. Tipos de interacción planta-hongo endofítico ………………………… 24 1.3.6. -
Who's Related to Whom?
149 Who’s related to whom? Recent results from molecular systematic studies Elizabeth A Kellogg Similarities among model systems can lead to generalizations systematist’s question-why are there so many different about plants, but understanding the differences requires kinds of organisms? Studies of the evolution of develop- systematic data. Molecular phylogenetic analyses produce ment demand that the investigator go beyond the model results similar to traditional classifications in the grasses system and learn the pattern of variation in its relatives (Poaceae), and relationships among the cereal crops [3*]. This requires a reasonable assessment of the relatives’ are quite clear. Chloroplast-based phylogenies for the identity. Solanaceae show that tomato is best considered as a species of Solarium, closely related to potatoes. Traditional Knowledge of plant relationships has increased rapidly classifications in the Brassicaceae are misleading with in the past decade, reflecting partly the development regard to true phylogenetic relationships and data are only of molecular systematics. It has been known for some now beginning to clarify the situation. Molecular data are time that plant classifications do not reflect phylogeny also being used to revise our view of relationships among accurately, even though both phylogeny and classification flowering plant families. Phylogenetic data are critical for are hierarchical. The hierarchy of classification was interpreting hypotheses of the evolution of development. imposed in the late 18th century, well before ideas of descent with modification (evolution) were prevalent [4]. These pre-evolutionary groups were then re-interpreted in Address an evolutionary context, and were assumed to be products Harvard University Herbaria, 22 Divinity Avenue Cambridge, MA of evolution, rather than man-made artefacts. -
Evolutionary Consequences of Dioecy in Angiosperms: the Effects of Breeding System on Speciation and Extinction Rates
EVOLUTIONARY CONSEQUENCES OF DIOECY IN ANGIOSPERMS: THE EFFECTS OF BREEDING SYSTEM ON SPECIATION AND EXTINCTION RATES by JANA C. HEILBUTH B.Sc, Simon Fraser University, 1996 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES (Department of Zoology) We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA July 2001 © Jana Heilbuth, 2001 Wednesday, April 25, 2001 UBC Special Collections - Thesis Authorisation Form Page: 1 In presenting this thesis in partial fulfilment of the requirements for an advanced degree at the University of British Columbia, I agree that the Library shall make it freely available for reference and study. I further agree that permission for extensive copying of this thesis for scholarly purposes may be granted by the head of my department or by his or her representatives. It is understood that copying or publication of this thesis for financial gain shall not be allowed without my written permission. The University of British Columbia Vancouver, Canada http://www.library.ubc.ca/spcoll/thesauth.html ABSTRACT Dioecy, the breeding system with male and female function on separate individuals, may affect the ability of a lineage to avoid extinction or speciate. Dioecy is a rare breeding system among the angiosperms (approximately 6% of all flowering plants) while hermaphroditism (having male and female function present within each flower) is predominant. Dioecious angiosperms may be rare because the transitions to dioecy have been recent or because dioecious angiosperms experience decreased diversification rates (speciation minus extinction) compared to plants with other breeding systems. -
Nutritional Value, Mineral Composition, Secondary Metabolites, and Antioxidant Activity of Some Wild Geophyte Sedges and Grasses
plants Article Nutritional Value, Mineral Composition, Secondary Metabolites, and Antioxidant Activity of Some Wild Geophyte Sedges and Grasses Saud L. Al-Rowaily 1, Ahmed M. Abd-ElGawad 1,2,* , Suliman M. Alghanem 3, Wafa’a A. Al-Taisan 4 and Yasser A. El-Amier 2 1 Plant Production Department, College of Food & Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh 11451, Saudi Arabia; [email protected] 2 Department of Botany, Faculty of Science, Mansoura University, Mansoura 35516, Egypt; [email protected] 3 Biology Department, Faculty of Science, Tabuk University, Tabuk 71491, Saudi Arabia; [email protected] 4 Department of Biology, College of Science, Imam Abdulrahman Bin Faisal University, P.O. Box 1982, Dammam 31441, Saudi Arabia; [email protected] * Correspondence: [email protected] or [email protected]; Tel.: +20-1003438980 or +966-562680864 Received: 11 November 2019; Accepted: 2 December 2019; Published: 4 December 2019 Abstract: Geophytes are plants with underground storage organs including bulbs, corms, tubers, and rhizomes, often physiologically active and able to survive during harsh environmental conditions. This study is conducted to assess the nutritive value, mineral composition, bioactive metabolites, and antioxidant activity of five wild geophytes (Cyperus capitatus, C. conglomeratus, Elymus farctus, Lasiurus scindicus, and Panicum turgidum) collected from the Nile Delta coast and inland desert. The proximate composition including dry matter, moisture content, ash content, fiber, fat, protein, sucrose, and glucose were determined. Also, total carbohydrates, total digestible nutrients (TDN), and nutritive values were calculated. Macro- and micro-minerals were also determined in the studied geophytes. -
Large Trees, Supertrees and the Grass Phylogeny
LARGE TREES, SUPERTREES AND THE GRASS PHYLOGENY Thesis submitted to the University of Dublin, Trinity College for the Degree of Doctor of Philosophy (Ph.D.) by Nicolas Salamin Department of Botany University of Dublin, Trinity College 2002 Research conducted under the supervision of Dr. Trevor R. Hodkinson Department of Botany, University of Dublin, Trinity College Dr. Vincent Savolainen Jodrell Laboratory, Molecular Systematics Section, Royal Botanic Gardens, Kew, London DECLARATION I thereby certify that this thesis has not been submitted as an exercise for a degree at any other University. This thesis contains research based on my own work, except where otherwise stated. I grant full permission to the Library of Trinity College to lend or copy this thesis upon request. SIGNED: ACKNOWLEDGMENTS I wish to thank Trevor Hodkinson and Vincent Savolainen for all the encouragement they gave me during the last three years. They provided very useful advice on scientific papers, presentation lectures and all aspects of the supervision of this thesis. It has been a great experience to work in Ireland, and I am especially grateful to Trevor for the warm welcome and all the help he gave me, at work or outside work, since the beginning of this Ph.D. in the Botany Department. I will always remember his patience and kindness to me at this time. I am also grateful to Vincent for his help and warm welcome during the different periods of time I stayed in London, but especially for all he did for me since my B.Sc. at the University of Lausanne. I wish also to thank Prof. -
A Survey of the Elymus L. S. L. Species Complex (Triticeae, Poaceae) in Italy: Taxa and Nothotaxa, New Combinations and Identification Key
Natural History Sciences. Atti Soc. it. Sci. nat. Museo civ. Stor. nat. Milano, 5 (2): 57-64, 2018 DOI: 10.4081/nhs.2018.392 A survey of the Elymus L. s. l. species complex (Triticeae, Poaceae) in Italy: taxa and nothotaxa, new combinations and identification key Enrico Banfi Abstract - Elymus s. l. is a critical topic on which only a little INTRODUCTION light has begun to be made regarding phylogenetic reticulation, Elymus L. s. l. is one of the most debated topic among genome evolution and consistency of genera. In Italy, Elymus s. l. officially includes ten species (nine native, one alien) and some genera within the tribe Triticeae (Poaceae), with represen- well-established and widespread hybrids generally not treated as tatives spread all over the world. It has been the subject little or nothing is known of them. In this paper fourteen species of basic studies (Löve A., 1984; Dewey, 1984) that have (with two subspecies) and six hybrids are taken into account and opened important horizons not only in the field of agroge- the following seven new combinations are proposed: Thinopyrum netic research, but also and especially on systematics and acutum (DC.) Banfi, Thinopyrum corsicum (Hack.) Banfi, Thi- taxonomy. However, the still rather coarse knowledge of nopyrum intermedium (Host) Barkworth & Dewey subsp. pouzolzii (Godr.) Banfi, Thinopyrum obtusiflorum (DC.) Banfi, Thinopyrum the genomes and the lack of a satisfactory interpretation ×duvalii (Loret) Banfi, ×Thinoelymus drucei (Stace) Banfi, ×Thi- of their role in the highly reticulate phylogeny of Triticeae noelymus mucronatus (Opiz) Banfi. Some observations are pro- for a long time discouraged taxonomists to clarify species vided for each subject and a key to species, subspecies and hybrids relationships within Elymus s. -
Phylogeny of Elymus Ststhh Allotetraploids Based on Three Nuclear Genes
Reticulate Evolutionary History of a Complex Group of Grasses: Phylogeny of Elymus StStHH Allotetraploids Based on Three Nuclear Genes Roberta J. Mason-Gamer*, Melissa M. Burns¤a, Marianna Naum¤b Department of Biological Sciences, The University of Illinois at Chicago, Chicago, Illinois, United States of America Abstract Background: Elymus (Poaceae) is a large genus of polyploid species in the wheat tribe Triticeae. It is polyphyletic, exhibiting many distinct allopolyploid genome combinations, and its history might be further complicated by introgression and lineage sorting. We focus on a subset of Elymus species with a tetraploid genome complement derived from Pseudoroegneria (genome St) and Hordeum (H). We confirm the species’ allopolyploidy, identify possible genome donors, and pinpoint instances of apparent introgression or incomplete lineage sorting. Methodology/Principal Findings: We sequenced portions of three unlinked nuclear genes—phosphoenolpyruvate carboxylase, b-amylase, and granule-bound starch synthase I—from 27 individuals, representing 14 Eurasian and North American StStHH Elymus species. Elymus sequences were combined with existing data from monogenomic representatives of the tribe, and gene trees were estimated separately for each data set using maximum likelihood. Trees were examined for evidence of allopolyploidy and additional reticulate patterns. All trees confirm the StStHH genome configuration of the Elymus species. They suggest that the StStHH group originated in North America, and do not support separate North American and European origins. Our results point to North American Pseudoroegneria and Hordeum species as potential genome donors to Elymus. Diploid P. spicata is a prospective St-genome donor, though conflict among trees involving P. spicata and the Eurasian P. -
Poaceae: Chloridoideae)
Peterson, P.M., K. Romaschenko, and Y. Herrera Arrieta. 2017. Four new subtribes: Allolepiinae, Jouveinae, Kaliniinae, and Sohnsiinae in the Cynodonteae (Poaceae: Chloridoideae). Phytoneuron 2017-44: 1–9. Published 18 July 2017. ISSN 2153 733 FOUR NEW SUBTRIBES: ALLOLEPIINAE, JOUVEINAE, KALINIINAE, AND SOHNSIINAE IN THE CYNODONTEAE (POACEAE: CHLORIDOIDEAE) PAUL M. PETERSON and KONSTANTIN ROMASCHENKO Department of Botany National Museum of Natural History Smithsonian Institution Washington, DC 20013-7012 [email protected] YOLANDA HERRERA ARRIETA Instituto Politécnico Nacional CIIDIR Unidad Durango-COFAA Durango, C.P. 34220, MÉXICO ABSTRACT Allolepis, Jouvea, Kalina , and Sohnsia are small (only Jouvea contains two species), often overlooked genera that are morphologically and genetically isolated within the tribe Cynodonteae. We present a molecular phylogeny using sequence data from seven plastid markers ( ccsA, ndhA intron, ndhF, rpl32-trnL, rpoC2, rps16-trnK , and rps16 intron) and the nuclear ribosomal internal transcribed spacer regions (ITS 1 & 2). Since Allolepis, Jouvea, Kalinia, and Sohnsia do not align within any of the 21 existing Cynodonteae subtribes, we describe Allolepiinae , Jouveinae , Kaliniinae , and Sohnsiinae as new. In addition, we provide descriptions, habitat, distribution, and comments for each subtribe. Allolepis texana (Vasey) Scribn., Jouvea pilosa (J. Presl) Scribn, J. straminea E. Fourn., and Sohnsia filifolia (E. Fourn.) Airy Shaw are dioecious, caespitose grasses, whereas Kalinia obtusiflora (E. Fourn.) H.L. Bell & Columbus has 4–8 mm wide, sharp-pointed rhizomes and perfect florets. Historically, these western hemisphere grasses were placed in other genera, i.e., Brizopyrum (Presl, 1830; Fournier 1886) , Calamochloa (Fournier 1877), Distichlis (Lamson-Scribner 1899), Eragrostis (Lamson-Scribner 1897) , Poa (Kunth 1833; Vasey 1890b), and Rhachidospermum (Vasey 1890a), until recently being aligned within the Cynodonteae (Columbus 2007; Peterson et al. -
Coastal Wetlunds of the Noytherrn Gua of Califurnia
AQUATIC CONSERVATION:MARINE AND FRESHWATERECOSYSTEMS Aquatic Conseru:Mar. Freshv. Ecosyst. l6: 5 28 (2006) Publishedonline in Wiley InterScience (www.interscience.wiley.com).DOI: 10.1002/aqc.68l Coastal wetlundsof the noytherrnGuA of Califurnia: inventory flnd conservutionstatus EDWARD P. GLENNO'*, PAMELA L. NAGLERU, RICHARD C. BRUSCAb and OSVEL HINOJOSA-HUERTA' " EnvironntentalResearch Laborator!-,2601 East Airport Drive, Tucson,AZ 85706, USA bAritora Sonora Desert Museum,2021 North Kinney RoacJ,Tucson, AZ 85743,USA 'Pronatura lVoroeste,Ave. Jalisco 903, Colonia Sonora, San Luis Rio Colorado, Sonora 83440. Meric'o ABSTRACT 1. Above 28"N, the coastlineof the northern Gulf of California is indented at frequent intervals by negative or inverseestuaries that are saltier at their backs than at their mouths due to the lack of freshwater inflow. These 'esteros'total over l32,ogo ha in area and encompassmangrove marshes below 29"N and saltgrass(Drsrichlis palmeri) marshes north of 29"N. An additional 6000 ha of freshwaterand brackish wetlandsare found in the Colorado River delta where fresh water entersthe intertidal zone. 2. The mangrove marshesin the Gulf of California have been afforded some degreeof protected statusin Mexico, but the northern saltgrassesteros do not have priority conservationstatus and are increasinglybecoming developmenttargets for resorts,vacation homes and aquaculture sites. 3. We conducted an inventory of the marshesusing aerial photography and satelliteimages, and evaluatedthe extent and type of developmenton eachmarsh. We reviewedthe availableliterature on the marshesto document their vegetationtypes and ecologicalfunctions in the adjacentmarine and terrestrial ecosystems. 4. Over 95"h of the mangrove marshes have been developed for shrimp farming. However, the larms are built adjacent to, rather than in, the marshes, and the mangrove stands are still mostly intact. -
Historical Review and Prospect of Taxonomy of Tribe Triticeae Dumortier (Poaceae)
Breeding Science 59: 513–518 (2009) Review Historical review and prospect of taxonomy of tribe Triticeae Dumortier (Poaceae) Chi Yen* and Jun Liang Yang Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan, The People’s Republic of China The tribe Triticeae is a taxon in the Poaceae that includes several important cereal crops and forage grasses. All its species, including those that are not used for cereals or forage, are potential sources of genes for crop and forage improvement so they all have high economic value. Taxonomic treatments, including those of the Triticeae, are the basis for identification. They are often designed to reflect phylogenetic relationships and provide a guide for germplasm utilization. Traditional taxonomic treatments of the Triticeae were based on comparative morphology and geography. Morphological characters are phenotypes of an organism, resulting from interactions between or among dominant genes and environmental factors. Morphology cannot reflect recessive inheritance. Similar environmental conditions may result in morphological convergence in distantly related taxa and different environmental conditions in morphological divergence of closely related taxa. Con- sequently, traditional morphological taxonomy may result in misclassification. Cytogenetic and/or molecular genomic analysis may reveal such mistakes. On the basis of recent genomic investigations of the Triticeae, we have recognized 30 genera in this tribe. The taxonomic changes and genomic constitution of these genera are presented in this paper. Key Words: Triticeae, genera, genomic constitution, phylogenetic relationships. Introduction Linnaeus (1753) later named them Aegilops ovata and Ae. triuncialis, respectively. These names are, however, al- The tribe Triticeae is a taxon in the Poaceae that includes ways attributed to Linnaeus because, ever since acceptance several important cereal crops and forage grasses. -
Grass Flowers: an Untapped Resource for Floral Evo-Devo
Journal of Systematics JSE and Evolution doi: 10.1111/jse.12251 Review Grass flowers: An untapped resource for floral evo-devo Amanda Schrager-Lavelle1, Harry Klein1, Amanda Fisher2, and Madelaine Bartlett1* 1Biology Department, University of Massachusetts, Amherst, MA 01003, USA 2Biological Sciences Department, California State University, Long Beach, CA 90840, USA *Author for correspondence. E-mail: [email protected] Received 14 February 2017; Accepted 27 March 2017; Article first published online xx Month 2017 Abstract The abrupt origin and rapid diversification of the flowering plants presents what Darwin called “an abominable mystery”. Floral diversification was a key factor in the rise of the flowering plants, but the molecular underpinnings of floral diversity remain mysterious. To understand the molecular biology underlying floral morphological evolution, genetic model systems are essential for rigorously testing gene function and gene interactions. Most model plants are eudicots, while in the monocots genetic models are almost entirely restricted to the grass family. Likely because grass flowers are diminutive and specialized for wind pollination, grasses have not been a major focus in floral evo-devo research. However, while grass flowers do not exhibit any of the raucous morphological diversification characteristic of the orchids, there is abundant floral variation in the family. Here, we discuss grass flower diversity, and review what is known about the developmental genetics of this diversity. In particular, we focus on three aspects of grass flower evolution: (1) the evolution of a novel organ identity—the lodicule; (2) lemma awns and their diversity; and (3) the convergent evolution of sexual differentiation. The combination of morphological diversity in the grass family at large and genetic models spread across the family provides a powerful framework for attaining deep understanding of the molecular genetics of floral evolution. -
El Salvador Grasses: an Updated Catalogue and Nomenclator
Menjívar Cruz, J.E., R.M. Baldini, G. Davidse, and P.M. Peterson. 2021. El Salvador grasses: An updated catalogue and nomenclator. Phytoneuron 2021-22: 1–131. Published 20 April 2021. ISSN 2153 733 EL SALVADOR GRASSES: AN UPDATED CATALOGUE AND NOMENCLATOR JENNY ELIZABETH MENJÍVAR CRUZ Museo de Historia Natural de El Salvador Ministerio de Cultura de El Salvador San Salvador, El Salvador [email protected] RICCARDO M. BALDINI Centro Studi Erbario Tropicale Dipartimento di Biologia Università di Firenze Florence, Italy [email protected] GERRIT DAVIDSE Research Department Missouri Botanical Garden St. Louis, Missouri 63110 [email protected] PAUL M. PETERSON Department of Botany National Museum of Natural History Smithsonian Institution Washington, D.C. 20013-7012 [email protected] ABSTRACT An updated catalogue and nomenclator of the grasses in the Poaceae family is presented for El Salvador. The work is based on bibliographic and herbarium research and on recent collecting trips carried out by the first author in El Salvador between 2014−2017. The catalogue reports 371 species, 10 infraspecific names, and 381 total taxa. Herbarium vouchers, bibliographic reports, and distributions within El Salvador are reported for each accepted taxon. Synonyms are included in the list and these are all directed to the accepted name. A new combination, Rugoloa pilosa var. lancifolia (Griseb.) Baldini & Menjívar, comb. nov., is provided. RESUMEN Se presenta un catálogo y nomenclador actualizado de la familia Poaceae para El Salvador. El trabajo se basa en investigaciones bibliográficas de herbario, y en viajes de recolección recientes realizados por el primer autor en El Salvador entre 2014−2017.