Grass Flowers: an Untapped Resource for Floral Evo-Devo
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GENETICS, GENOMICS and BREEDING of FORAGE CROPS Genetics, Genomics and Breeding of Crop Plants
Genetics, Genomics and Breeding of Genetics, Genomics and Breeding of About the Series Genetics, Genomics and Breeding of AboutAbout the the Series Series SeriesSeries on on BasicBasic and and advanced advanced concepts, concepts, strategies, strategies, tools tools and and achievements achievements of of Series on Basicgenetics, and advanced genomics concepts, and breeding strategies, of crops tools haveand beenachievements comprehensively of Genetics,Genetics, Genomics Genomics and and Breeding Breeding of of Crop Crop Plants Plants genetics,genetics, genomics genomics and and breeding breeding of ofcrops crops have have been been comprehensively comprehensively Genetics, Genomics and Breeding of Crop Plants deliberateddeliberated in in30 30volumes volumes each each dedicated dedicated to toan an individual individual crop crop or orcrop crop Series Editor deliberatedgroup. in 30 volumes each dedicated to an individual crop or crop Series Series Editor Editor group.group. Chittaranjan Chittaranjan Kole, Kole, Vice-Chancellor, Vice-Chancellor, BC BC Agricultural Agricultural University, University, India India The series editor and one of the editors of this volume, Prof. Chittaranjan Chittaranjan Kole, Vice-Chancellor, BC Agricultural University, India TheThe series series editor editor and and one one of theof the editors editors of thisof this volume, volume, Prof. Prof. Chittaranjan Chittaranjan Kole,Kole, is globallyis globally renowned renowned for for his his pioneering pioneering contributions contributions in inteaching teaching and and Kole,research is globally for renowned nearly three for decades his pioneering on plant contributions genetics, genomics, in teaching breeding and and researchresearch for for nearly nearly three three decades decades on onplant plant genetics, genetics, genomics, genomics, breeding breeding and and biotechnology.biotechnology. -
Poaceae: Bambusoideae) Christopher Dean Tyrrell Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 2008 Systematics of the neotropical woody bamboo genus Rhipidocladum (Poaceae: Bambusoideae) Christopher Dean Tyrrell Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Botany Commons Recommended Citation Tyrrell, Christopher Dean, "Systematics of the neotropical woody bamboo genus Rhipidocladum (Poaceae: Bambusoideae)" (2008). Retrospective Theses and Dissertations. 15419. https://lib.dr.iastate.edu/rtd/15419 This Thesis is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Systematics of the neotropical woody bamboo genus Rhipidocladum (Poaceae: Bambusoideae) by Christopher Dean Tyrrell A thesis submitted to the graduate faculty in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Major: Ecology and Evolutionary Biology Program of Study Committee: Lynn G. Clark, Major Professor Dennis V. Lavrov Robert S. Wallace Iowa State University Ames, Iowa 2008 Copyright © Christopher Dean Tyrrell, 2008. All rights reserved. 1457571 1457571 2008 ii In memory of Thomas D. Tyrrell Festum Asinorum iii TABLE OF CONTENTS ABSTRACT iv CHAPTER 1. GENERAL INTRODUCTION 1 Background and Significance 1 Research Objectives 5 Thesis Organization 6 Literature Cited 6 CHAPTER 2. PHYLOGENY OF THE BAMBOO SUBTRIBE 9 ARTHROSTYLIDIINAE WITH EMPHASIS ON RHIPIDOCLADUM Abstract 9 Introduction 10 Methods and Materials 13 Results 19 Discussion 25 Taxonomic Treatment 26 Literature Cited 31 CHAPTER 3. -
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae) Yun-Jie Zhang1,2,3., Peng-Fei Ma1,2,3., De-Zhu Li1,2* 1 Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 2 Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 3 Graduate University of Chinese Academy of Sciences, Beijing, People’s Republic of China Abstract Background: Bambusoideae is the only subfamily that contains woody members in the grass family, Poaceae. In phylogenetic analyses, Bambusoideae, Pooideae and Ehrhartoideae formed the BEP clade, yet the internal relationships of this clade are controversial. The distinctive life history (infrequent flowering and predominance of asexual reproduction) of woody bamboos makes them an interesting but taxonomically difficult group. Phylogenetic analyses based on large DNA fragments could only provide a moderate resolution of woody bamboo relationships, although a robust phylogenetic tree is needed to elucidate their evolutionary history. Phylogenomics is an alternative choice for resolving difficult phylogenies. Methodology/Principal Findings: Here we present the complete nucleotide sequences of six woody bamboo chloroplast (cp) genomes using Illumina sequencing. These genomes are similar to those of other grasses and rather conservative in evolution. We constructed a phylogeny of Poaceae from 24 complete cp genomes including 21 grass species. Within the BEP clade, we found strong support for a sister relationship between Bambusoideae and Pooideae. In a substantial improvement over prior studies, all six nodes within Bambusoideae were supported with $0.95 posterior probability from Bayesian inference and 5/6 nodes resolved with 100% bootstrap support in maximum parsimony and maximum likelihood analyses. -
Major Vegetation Types of the Soutpansberg Conservancy and the Blouberg Nature Reserve, South Africa
Original Research MAJOR VEGETATION TYPES OF THE SOUTPANSBERG CONSERVANCY AND THE BLOUBERG NATURE RESERVE, SOUTH AFRICA THEO H.C. MOSTERT GEORGE J. BREDENKAMP HANNES L. KLOPPER CORNIE VERWEy 1African Vegetation and Plant Diversity Research Centre Department of Botany University of Pretoria South Africa RACHEL E. MOSTERT Directorate Nature Conservation Gauteng Department of Agriculture Conservation and Environment South Africa NORBERT HAHN1 Correspondence to: Theo Mostert e-mail: [email protected] Postal Address: African Vegetation and Plant Diversity Research Centre, Department of Botany, University of Pretoria, Pretoria, 0002 ABSTRACT The Major Megetation Types (MVT) and plant communities of the Soutpansberg Centre of Endemism are described in detail, with special reference to the Soutpansberg Conservancy and the Blouberg Nature Reserve. Phytosociological data from 442 sample plots were ordinated using a DEtrended CORrespondence ANAlysis (DECORANA) and classified using TWo-Way INdicator SPecies ANalysis (TWINSPAN). The resulting classification was further refined with table-sorting procedures based on the Braun–Blanquet floristic–sociological approach of vegetation classification using MEGATAB. Eight MVT’s were identified and described asEragrostis lehmanniana var. lehmanniana–Sclerocarya birrea subsp. caffra Blouberg Northern Plains Bushveld, Euclea divinorum–Acacia tortilis Blouberg Southern Plains Bushveld, Englerophytum magalismontanum–Combretum molle Blouberg Mountain Bushveld, Adansonia digitata–Acacia nigrescens Soutpansberg -
Phylogeny and Subfamilial Classification of the Grasses (Poaceae) Author(S): Grass Phylogeny Working Group, Nigel P
Phylogeny and Subfamilial Classification of the Grasses (Poaceae) Author(s): Grass Phylogeny Working Group, Nigel P. Barker, Lynn G. Clark, Jerrold I. Davis, Melvin R. Duvall, Gerald F. Guala, Catherine Hsiao, Elizabeth A. Kellogg, H. Peter Linder Source: Annals of the Missouri Botanical Garden, Vol. 88, No. 3 (Summer, 2001), pp. 373-457 Published by: Missouri Botanical Garden Press Stable URL: http://www.jstor.org/stable/3298585 Accessed: 06/10/2008 11:05 Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/page/info/about/policies/terms.jsp. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/action/showPublisher?publisherCode=mobot. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. JSTOR is a not-for-profit organization founded in 1995 to build trusted digital archives for scholarship. We work with the scholarly community to preserve their work and the materials they rely upon, and to build a common research platform that promotes the discovery and use of these resources. For more information about JSTOR, please contact [email protected]. -
Ovular Features of African Arundinoid Grasses
I I OVULAR I FEATURES OF AFRICAN ARUNDINOID GRASSES I G.A. Verboom .I I ABSTRACT I Pre-fertilisational ovules of 34 species in 12 genera of African arundinoid grasses were examined, and found to possess a number of peculiar features. Most I strikingly, haustoria! synergids, reported earlier by Philipson (1977) and Philipson and Connor (1984) for a number of Australasian and South American arundinoids ~I were found in ·at least 19 African taxa. This character, and an expanded micropyle, are used to recognise a monophyletic danthonioid group, that includes species of I Chaetobromus, Conaderia, Karroochloa, Merxmuellera, Pentameris, Pentaschistis, Pseudopentameris, Schismus, Tribolium and Urochlaena, as well as Chionochloa, I Danthonia, Erythanthera, Lamprothyrsus, Pyrrhanthera, Rytidosperma and Sieglingia. The full extent of this group remains indeterminate, however, since I several smaller arundinoid genera remain embryologically unstudied. Significantly, the genera Centropodia, Dregeochloa, Arundo and Phragmites do not appear to I belong in this group, despite their present association with its members. I University of Cape Town I I I I.- I I I The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgement of the source. The thesis is to be used for private study or non- commercial research purposes only. Published by the University of Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University of Cape Town I I INTRODUCTION I ,I Most recent classifications of the Poaceae treat the family as comprising five major subfamilies, the Panicoideae, the Pooideae, the Bambusoideae, the Chloridoideae, I and the Arundinoideae (e.g. -
Morphological, Anatomical, and Taxonomic Studies in Anomochloa and Streptochaeta (Poaceae: Bambusoideae)
SMITHSONIAN CONTRIBUTIONS TO BOTANY NUMBER 68 Morphological, Anatomical, and Taxonomic Studies in Anomochloa and Streptochaeta (Poaceae: Bambusoideae) Emmet J. Judziewicz and Thomas R. Soderstrom SMITHSONIAN INSTITUTION PRESS Washington, D.C. 1989 ABSTRACT Judziewicz, Emmet J., and Thomas R. Soderstrom. Morphological, Anatomical, and Taxonomic Studies in Anomochloa and Streptochaeta (Poaceae: Bambusoideae). Smithsonian Contributions to Botany, number 68,52 pages, 24 figures, 1 table, 1989.-Although resembling the core group of the bambusoid grasses in many features of leaf anatomy, the Neotropical rainforest grass genera Anomochloa and Streptochaeta share characters that are unusual in the subfamily: lack of ligules, exceptionally long microhairs with an unusual morphology, a distinctive leaf blade midrib structure, and 5-nerved coleoptiles. Both genera also possess inflorescences that are difficult to interpret in conventional agrostological terms. Anomochloa is monotypic, and A. marantoidea, described in 1851 by Adolphe Brongniart from cultivated material of uncertain provenance, was rediscovered in 1976 in the wet forests of coastal Bahia, Brazil. The inflorescence terminates in a spikelet and bears along its rachis several scorpioid cyme-like partial inflorescences. Each axis of a partial inflorescence is subtended by a keeled bract and bears as its first appendages two tiny, unvascularized bracteoles attached at slightly different levels. The spikelets are composed of an axis that bears two bracts and terminates in a flower. The lower, chlorophyllous, deciduous spikelet bract is separated from the coriaceous, persistent, corniculate upper bract by a cylindrical, indurate internode. The flower consists of a low membrane surmounted by a dense ring of brown cilia (perigonate annulus) surrounding the andrecium of four stamens, and an ovary bearing a single hispid stigma. -
GENOME EVOLUTION in MONOCOTS a Dissertation
GENOME EVOLUTION IN MONOCOTS A Dissertation Presented to The Faculty of the Graduate School At the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy By Kate L. Hertweck Dr. J. Chris Pires, Dissertation Advisor JULY 2011 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation entitled GENOME EVOLUTION IN MONOCOTS Presented by Kate L. Hertweck A candidate for the degree of Doctor of Philosophy And hereby certify that, in their opinion, it is worthy of acceptance. Dr. J. Chris Pires Dr. Lori Eggert Dr. Candace Galen Dr. Rose‐Marie Muzika ACKNOWLEDGEMENTS I am indebted to many people for their assistance during the course of my graduate education. I would not have derived such a keen understanding of the learning process without the tutelage of Dr. Sandi Abell. Members of the Pires lab provided prolific support in improving lab techniques, computational analysis, greenhouse maintenance, and writing support. Team Monocot, including Dr. Mike Kinney, Dr. Roxi Steele, and Erica Wheeler were particularly helpful, but other lab members working on Brassicaceae (Dr. Zhiyong Xiong, Dr. Maqsood Rehman, Pat Edger, Tatiana Arias, Dustin Mayfield) all provided vital support as well. I am also grateful for the support of a high school student, Cady Anderson, and an undergraduate, Tori Docktor, for their assistance in laboratory procedures. Many people, scientist and otherwise, helped with field collections: Dr. Travis Columbus, Hester Bell, Doug and Judy McGoon, Julie Ketner, Katy Klymus, and William Alexander. Many thanks to Barb Sonderman for taking care of my greenhouse collection of many odd plants brought back from the field. -
Poaceae: Pooideae) Based on Plastid and Nuclear DNA Sequences
d i v e r s i t y , p h y l o g e n y , a n d e v o l u t i o n i n t h e monocotyledons e d i t e d b y s e b e r g , p e t e r s e n , b a r f o d & d a v i s a a r h u s u n i v e r s i t y p r e s s , d e n m a r k , 2 0 1 0 Phylogenetics of Stipeae (Poaceae: Pooideae) Based on Plastid and Nuclear DNA Sequences Konstantin Romaschenko,1 Paul M. Peterson,2 Robert J. Soreng,2 Núria Garcia-Jacas,3 and Alfonso Susanna3 1M. G. Kholodny Institute of Botany, Tereshchenkovska 2, 01601 Kiev, Ukraine 2Smithsonian Institution, Department of Botany MRC-166, National Museum of Natural History, P.O. Box 37012, Washington, District of Columbia 20013-7012 USA. 3Laboratory of Molecular Systematics, Botanic Institute of Barcelona (CSIC-ICUB), Pg. del Migdia, s.n., E08038 Barcelona, Spain Author for correspondence ([email protected]) Abstract—The Stipeae tribe is a group of 400−600 grass species of worldwide distribution that are currently placed in 21 genera. The ‘needlegrasses’ are char- acterized by having single-flowered spikelets and stout, terminally-awned lem- mas. We conducted a molecular phylogenetic study of the Stipeae (including all genera except Anemanthele) using a total of 94 species (nine species were used as outgroups) based on five plastid DNA regions (trnK-5’matK, matK, trnHGUG-psbA, trnL5’-trnF, and ndhF) and a single nuclear DNA region (ITS). -
Phylogenetic Analyses Reveal the Shady History of C4 Grasses Erika J
Phylogenetic analyses reveal the shady history of C4 grasses Erika J. Edwardsa,1 and Stephen A. Smithb aDepartment of Ecology and Evolutionary Biology, Brown University, Providence, RI 02912; and bNational Evolutionary Synthesis Center, Durham, NC 27705 Edited by Michael J. Donoghue, Yale University, New Haven, CT, and approved December 31, 2009 (received for review August 24, 2009) Grasslands cover more than 20% of the Earth's terrestrial surface, has provided a strong selection pressure for C4 evolution in and their rise to dominance is one of the most dramatic events of eudicots (4). Grasses have long been viewed as an interesting biome evolution in Earth history. Grasses possess two main photo- exception to this pattern (9). Significant positive correlations synthetic pathways: the C3 pathway that is typical of most plants between C4 grass abundance and growing season temperature and a specialized C4 pathway that minimizes photorespiration and have been documented at both continental and regional scales thus increases photosynthetic performance in high-temperature (10–13); C4 grasses dominate tropical grasslands and savannas and/or low-CO2 environments. C4 grasses dominate tropical and but are virtually absent from cool-temperate grasslands and subtropical grasslands and savannas, and C3 grasses dominate the steppes. Furthermore, both experimental measurements of world's cooler temperate grassland regions. This striking pattern photosynthetic light use efficiency (termed “quantum yield”), has been attributed to C4 physiology, with the implication that the and predictions of leaf models of C3 and C4 photosynthesis evolution of the pathway enabled C4 grasses to persist in warmer provide strong evidence that C4 grasses outperform C3 grasses at climates than their C3 relatives. -
Viruses Virus Diseases Poaceae(Gramineae)
Viruses and virus diseases of Poaceae (Gramineae) Viruses The Poaceae are one of the most important plant families in terms of the number of species, worldwide distribution, ecosystems and as ingredients of human and animal food. It is not surprising that they support many parasites including and more than 100 severely pathogenic virus species, of which new ones are being virus diseases regularly described. This book results from the contributions of 150 well-known specialists and presents of for the first time an in-depth look at all the viruses (including the retrotransposons) Poaceae(Gramineae) infesting one plant family. Ta xonomic and agronomic descriptions of the Poaceae are presented, followed by data on molecular and biological characteristics of the viruses and descriptions up to species level. Virus diseases of field grasses (barley, maize, rice, rye, sorghum, sugarcane, triticale and wheats), forage, ornamental, aromatic, wild and lawn Gramineae are largely described and illustrated (32 colour plates). A detailed index Sciences de la vie e) of viruses and taxonomic lists will help readers in their search for information. Foreworded by Marc Van Regenmortel, this book is essential for anyone with an interest in plant pathology especially plant virology, entomology, breeding minea and forecasting. Agronomists will also find this book invaluable. ra The book was coordinated by Hervé Lapierre, previously a researcher at the Institut H. Lapierre, P.-A. Signoret, editors National de la Recherche Agronomique (Versailles-France) and Pierre A. Signoret emeritus eae (G professor and formerly head of the plant pathology department at Ecole Nationale Supérieure ac Agronomique (Montpellier-France). Both have worked from the late 1960’s on virus diseases Po of Poaceae . -
Jan Dvorak (As Quickly Written Down by a Person with Poor Hearing…Me)
1/22/2018 The Impact of Polyploidy on Genome Evolution in Poales and Other Monocots “I don’t have to emphasize that gene duplications are the fabric of evolution in plants.” -Jan Dvorak (as quickly written down by a person with poor hearing…me) Michael R. McKain The University of Alabama @mrmckain @mrmckain Poales Diversity Grass genomes: the choose your own adventure of genome evolution • ~22,800 species • ~11,088 species in Poaceae • Transposons (McClintock, Wessler) • GC content bias (Carels and Bernardi 2000) • Three WGD events 0 0 4 0 0 • rho (Peterson et al. 2004) 3 y c n 0 e 0 u 2 q e r F • 0 sigma (Tang et al. 2010) 0 1 • tau (Tang et al. 2010, Jiao et al. 2014) 0 %GC Givnish et al. 2010 @mrmckain Schnable et al., 2009 Zeroing in on WGD placement Banana genome Pineapple genome How has ancient polyploidy altered the genomic landscape in grasses and other Poales? D’Hont et al. 2012 Ming, VanBuren et al. 2015 Recovered sigma after grass divergence from commelinids Recovered sigma after grass+pineapple divergence from commelinids @mrmckain @mrmckain 1 1/22/2018 Phylotranscriptomic approach Coalescence-based Phylogeny of 234 Single-copy genes • Sampling 27 transcriptomes and 7 genomes • Phylogeny consistent with previous • Representation for all families (except Thurniaceae) in nuclear gene results Poales • Conflicting topology with • RNA from young leaf or apical meristem, a combination of chloroplast genome tree: Moncot Tree of Life and 1KP • Ecdeiocolea/Joinvillea sister instead of • General steps: a grade • Trinity assembly • Typha