Carbohydrates
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Genomewide and Enzymatic Analysis Reveals Efficient D-Galacturonic
RESEARCH ARTICLE Molecular Biology and Physiology Genomewide and Enzymatic Analysis Reveals Efficient D-Galacturonic Acid Metabolism in the Basidiomycete Yeast Rhodosporidium toruloides Ryan J. Protzko,a,b Christina A. Hach,c Samuel T. Coradetti,b,d Magdalena A. Hackhofer,c Sonja Magosch,c Nils Thieme,c Gina M. Geiselman,b,d Adam P. Arkin,b,d,f Jeffrey M. Skerker,b,d,f John E. Dueber,b,e,f J. Philipp Benzc aDepartment of Molecular and Cell Biology, University of California, Berkeley, California, USA bEnergy Biosciences Institute, Berkeley, California, USA cHolzforschung München, TUM School of Life Sciences Weihenstephan, Technische Universität München, Freising, Germany dEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA eBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA fDepartment of Bioengineering, University of California, Berkeley, California, USA ABSTRACT Biorefining of renewable feedstocks is one of the most promising routes to replace fossil-based products. Since many common fermentation hosts, such as Saccharomyces cerevisiae, are naturally unable to convert many component plant cell wall polysaccharides, the identification of organisms with broad catabolism capabilities represents an opportunity to expand the range of substrates used in fer- mentation biorefinery approaches. The red basidiomycete yeast Rhodosporidium to- ruloides is a promising and robust host for lipid- and terpene-derived chemicals. Pre- vious studies demonstrated assimilation of a range of substrates, from C5/C6 sugars to aromatic molecules similar to lignin monomers. In the current study, we analyzed the potential of R. toruloides to assimilate D-galacturonic acid, a major sugar in many pectin-rich agricultural waste streams, including sugar beet pulp and citrus peels. -
Xylooligosaccharides Production, Quantification, and Characterization
19 Xylooligosaccharides Production, Quantification, and Characterization in Context of Lignocellulosic Biomass Pretreatment Qing Qing1, Hongjia Li2,3,4,Ã, Rajeev Kumar2,4 and Charles E. Wyman2,3,4 1 Pharmaceutical Engineering & Life Science, Changzhou University, Changzhou, China 2 Center for Environmental Research and Technology, University of California, Riverside, USA 3 Department of Chemical and Environmental Engineering, University of California, Riverside, USA 4 BioEnergy Science Center, Oak Ridge, USA 19.1 Introduction 19.1.1 Definition of Oligosaccharides Oligosaccharides, also termed sugar oligomers, refer to short-chain polymers of monosaccharide units con- nected by a and/or b glycosidic bonds. In structure, oligosaccharides represent a class of carbohydrates between polysaccharides and monosaccharides, but the range of degree of polymerization (DP, chain length) spanned by oligosaccharides has not been consistently defined. For example, the Medical Subject Headings (MeSH) database of the US National Library of Medicine defines oligosaccharides as carbohy- drates consisting of 2–10 monosaccharide units; in other literature, sugar polymers with DPs of up to 30–40 have been included as oligosaccharides [1–3]. ÃPresent address: DuPont Industrial Biosciences, Palo Alto, USA Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals, First Edition. Edited by Charles E. Wyman. Ó 2013 John Wiley & Sons, Ltd. Published 2013 by John Wiley & Sons, Ltd. 392 Aqueous Pretreatment of Plant Biomass for -
Ii- Carbohydrates of Biological Importance
Carbohydrates of Biological Importance 9 II- CARBOHYDRATES OF BIOLOGICAL IMPORTANCE ILOs: By the end of the course, the student should be able to: 1. Define carbohydrates and list their classification. 2. Recognize the structure and functions of monosaccharides. 3. Identify the various chemical and physical properties that distinguish monosaccharides. 4. List the important monosaccharides and their derivatives and point out their importance. 5. List the important disaccharides, recognize their structure and mention their importance. 6. Define glycosides and mention biologically important examples. 7. State examples of homopolysaccharides and describe their structure and functions. 8. Classify glycosaminoglycans, mention their constituents and their biological importance. 9. Define proteoglycans and point out their functions. 10. Differentiate between glycoproteins and proteoglycans. CONTENTS: I. Chemical Nature of Carbohydrates II. Biomedical importance of Carbohydrates III. Monosaccharides - Classification - Forms of Isomerism of monosaccharides. - Importance of monosaccharides. - Monosaccharides derivatives. IV. Disaccharides - Reducing disaccharides. - Non- Reducing disaccharides V. Oligosaccarides. VI. Polysaccarides - Homopolysaccharides - Heteropolysaccharides - Carbohydrates of Biological Importance 10 CARBOHYDRATES OF BIOLOGICAL IMPORTANCE Chemical Nature of Carbohydrates Carbohydrates are polyhydroxyalcohols with an aldehyde or keto group. They are represented with general formulae Cn(H2O)n and hence called hydrates of carbons. -
Biochemistry Introductory Lecture Dr
Biochemistry Introductory lecture Dr. Munaf S. Daoud Carbohydrates (CHO) Definition: Aldehyde or Ketone derivatives of the higher polyhydric alcohols or compounds which yield these derivatives on hydrolysis. Classification: (mono, di, oligo, poly) saccharide. Monosaccharides: Can be classified as trioses, tetroses, pentoses, hexoses and heptoses depending upon the number of carbon atoms, and as aldoses or ketoses, depending upon whether they have an aldehyde or ketone group. Aldehyde (-CHO) Aldoses Ketone (-C=O) Ketoses Polysaccharides (glycans): Homopolysaccharides (homoglycans): e.g. starch, glycogen, inulin, cellulose, dextrins, dextrans. Heteropolysaccharides (heteroglycans): e.g. mucopolysaccharides (MPS) or glycosaminoglycans. Function of CHO: 1) Chief source of energy (immediate and stored energy). 2) Constituent of compound lipids and conjugated protein. 3) Structural element like cellulose. 4) Drugs like cardiac glycosides and antibodies. 5) Lactating mammary gland (Lactose in milk). 6) Synthesis of other substances like fatty acids, cholesterol, amino acids…etc. by their degradation products. 7) Constituent of mucopolysaccharides. 1 1) Stereo-isomerism Stereo-isomers: D-form, L-form 2) Optical isomers (optical activity) Enantiomers: dextrorotatory (d or + sign) Levorotatory (l or – sign) Racemic (d l) 3) Cyclic structures or open chain 4) Anomers and Anomeric carbon OH on carbon number 1, if below the plane then its -form, if above the plane then -form. Mutarotation: the changes of the initial optical rotation that takes place -
Carbohydrates
CARBOHYDRATES By: Dr. MohammedAzim Bagban MI 201 Assistant Professor, Unit-1 C. U. SHAH Institute of Science LECTURE OUTLINE The Importance of carbohydrates. The Definition of Carbohydrates. The Classification of Carbohydrates. The Difference between various Isomers.. CARBOHYDRATE: IMPORTANCE Most Abundant Class of Biomolecules. An Important Macronutrient. Performs important physiological functions in the body. Associated with Pathological Conditions (Diabetes Mellitus, Lactose Intolerance). DEFINING CARBOHYDRATES Carbohydrates or Saccharides (Greek Sakcharon meaning "Sugar") Organic compounds composed of Carbon, Hydrogen and oxygen. Many Carbohydrates also contain Nitrogen and other elements. Carbohydrates derive their name from a Misleading Concept 'Hydrates of Carbon’ Hydrogen and Oxygen in Carbohydrates were found to be present in the same proportion as in water. (2:1).(E.g. Glucose C6H12O6 or C6 (H2O)6). It is due to this fact that compounds derived their name “Carbon Hydrate”. GLUCOSE H-C=O H-C-OH OH-C-H H-C-OH H-C-OH CH2OH This term is not a perfect derivation as many carbohydrates do not have the same proportion as water. Example: DEOXYRIBOSE (C5H10O4) H-C=O H-C-H H-C-OH H-C-OH CH2OH CHEMICAL DEFINITION OF CARBOHYDRATES Polyhydroxyl: Having more than one hydroxyl group. (-OH) Functional Group: It is a specific group of atoms or bonds which are part of a larger hydrocarbon chain.(Provide a specific chemical behaviour). For carbohydrates, the functional group is the carbonyl group which may be either Aldehyde -
Engineering Saccharomyces Cerevisiae for Co-Utilization of D
ARTICLE DOI: 10.1038/s41467-018-07589-w OPEN Engineering Saccharomyces cerevisiae for co- utilization of D-galacturonic acid and D-glucose from citrus peel waste Ryan J. Protzko1, Luke N. Latimer2, Ze Martinho3, Elise de Reus4, Tanja Seibert5,6, J. Philipp Benz 5 & John E. Dueber 3,7 1234567890():,; Pectin-rich biomasses, such as citrus peel and sugar beet pulp, hold promise as inexpensive feedstocks for microbial fermentations as enzymatic hydrolysis of their component poly- saccharides can be accomplished inexpensively to yield high concentrations of fermentable sugars and D-galacturonic acid (D-galUA). In this study, we tackle a number of challenges associated with engineering a microbial strain to convert pectin-rich hydrolysates into commodity and specialty chemicals. First, we engineer D-galUA utilization into yeast, Sac- charomyces cerevisiae. Second, we identify that the mechanism of D-galUA uptake into yeast is mediated by hexose transporters and that consumption of D-galUA is inhibited by D-glucose. Third, we enable co-utilization of D-galUA and D-glucose by identifying and expressing a heterologous transporter, GatA, from Aspergillus niger. Last, we demonstrate the use of this transporter for production of the platform chemical, meso-galactaric acid, directly from industrial Navel orange peel waste. 1 Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA. 2 Department of Chemistry, University of California, Berkeley, CA 94720, USA. 3 Department of Bioengineering, University of California, Berkeley, CA 94720, USA. 4 Department of Biotechnology and Biomedicine, Technical University of Denmark, 2800 Kgs Lyngby, Denmark. 5 Holzforschung München, TUM School of Life Sciences Weihenstephan, Technische Universität München, Freising, Germany. -
Sugars and Polysaccharides Monosaccharides Polysaccharides
Sugars and Polysaccharides Monosaccharides Polysaccharides Glycoproteins Monosaccharides (simple sugars) Classification monosaccharides are classified according to the chemical nature of the carbonyl group and # of C atoms aldose - aldehyde ketose - ketone triose - 3 tetrose - 4 pentose - 5 hexose - 6 heptose - 7 D-sugars same absolute configuration as D-glyceraldehyde based on asymmetric center farthest removed from carbonyl group Monosaccharides Configuration and conformation Hemiacetals and hemiketals - result of alcohols reacting with aldehydes and ketones Fischer projections Haworth projections pyranose (pyran) furanose (furan) anomers - anomeric carbon α configuration - OH group at anomeric carbon is on opposite side of sugar ring from the CH2OH group on the chiral center β configuration - OH group at anomeric carbon is on same side of sugar ring as the CH2OH group on the chiral center mutarotation - interconverts α and β forms boat and chair - axial and equatorial group interactions determine free energy of molecule Monosaccharides Sugar derivatives Chemistry of monosaccharides is largely that of their hydroxy and carbonyl groups Anomeric hydroxyl group condenses with alcohol to form α- and β-glycosides Polysaccharides held together by glycosidic bonds between monosaccharide units Reducing sugars have anomeric carbons that are not involved in glycosidic bonds Aldonic acid - oxidation of aldehyde group to carboxylic acid (i.e., gluconic acid) Uronic acids - oxidation of primary alcohol group to carboxylic acid (i.e., glucuronic acid) -
The Carbohydrates
Title The Carbohydrates [C(H2O)]n Emil Hermann Fischer (1852-1919) F-R Convention The Fischer-Rosanoff Convention CHO CHO CHO H OH H OH C2-OH H OH H OH C3-OH H OH H OH C4-OH H OH H OH C5-OH CH2OH CH2OH C6-CH2OH Fischer Projections Rosanoff Modification D/L Series Fischer-Rosanoff D- and L-Series OH on the right of the highest OH on the left of the highest numbered chiral carbon = D-series. numbered chiral carbon = L-series. D-Aldohexoses The D-Aldohexoses C5 8 right C3 2 right 2 left 2 right 2 left C4 4 right 4 left C2 right left right left right left right left Allose Glucose Gulose Galactose Altrose Mannose Idose Talose All altruists gladly make gum in gallon tanks [L. Fieser] Rxn of Aldoses Reactions of Aldoses CHO =N-NHPh CHO HO OH 3 equiv. PhNHNH2 =N-NHPh 3 equiv. PhNHNH2 OH OH OH OH OH HNO3 OH HNO3 OH OH OH osazone NaBH4 NaBH4 CH2OH CH2OH CH2OH Br2/H2O + PhNH2 + NH3 Br2/H2O CO2H CH2OH CO2H CO2H CH2OH CO2H OH OH OH HO HO HO OH OH OH OH OH OH OH OH OH OH OH OH OH OH OH OH OH OH CH2OH CH2OH CO2H CO2H CH2OH CH2OH aldonic acid alditol aldaric acid aldaric acid alditol aldonic acid achiral achiral Osazones More on Osazones CHO CH2OH CHO O Ca(OH)2 OH Ca(OH)2 HO HO HO HO OH OH OH (Lobry de Bruyn- OH OH Alberda van Eckenstein OH rearrangement, 1895) CH2OH CH2OH CH2OH D-glucose D-fructose D-mannose 1 equiv. -
Peer-Review Article
PEER-REVIEWED ARTICLE bioresources.com SIMULTANEOUS SEPARATION AND QUANTITATIVE DETERMINATION OF MONOSACCHARIDES, URONIC ACIDS, AND ALDONIC ACIDS BY HIGH PERFORMANCE ANION- EXCHANGE CHROMATOGRAPHY COUPLED WITH PULSED AMPEROMETRIC DETECTION IN CORN STOVER PREHYDROLYSATES Xing Wang,a,b Yong Xu,a,b,c,* Li Fan,a,b Qiang Yong,a,b and Shiyuan Yu a,b A method for simultaneous separation and quantitative determination of arabinose, galactose, glucose, xylose, xylonic acid, gluconic acid, galacturonic acid, and glucuronic acid was developed by using high performance anion-exchange chromatography coupled with pulsed amperometric detection (HPAEC-PAD). The separation was performed on a CarboPacTM PA-10 column (250 mm × 2 mm) with a various gradient elution of NaOH-NaOAc solution as the mobile phase. The calibration curves showed good linearity (R2 ≥ 0.9993) for the monosaccharides, uronic acids, and aldonic acids in the range of 0.1 to 12.5 mg/L. The detection limits (LODs) and the quantification limits (LOQs) were 4.91 to 18.75 μg/L and 16.36 to 62.50 μg/L, respectively. Relative standard deviations (RSDs) of the retention times and peak areas for the seven consecutive determinations of an unknown amount of mixture were 0.15% to 0.44% and 0.22% to 2.31%, respectively. The established method was used to separate and determine four monosaccharides, two uronic acids, and two aldonic acids in the prehydrolysate from dilute acid steam-exploded corn stover within 21 min. The spiked recoveries of monosaccharides, uronic acids, and aldonic acids ranged from 91.25% to 108.81%, with RSDs (n=3) of 0.04% ~ 6.07%. -
CARBOHYDRATES STRUCTURE and CLASSIFICATION • Term Carbohydrate Is Derived from the French: HYDRATE DE CARBONE • Compounds Composed of C, H, and O
CARBOHYDRATES STRUCTURE AND CLASSIFICATION • Term carbohydrate is derived from the French: HYDRATE DE CARBONE • compounds composed of C, H, and O • (CH2O)n when n = 5 then C5H10O5 • not all carbohydrates have this empirical formula: deoxysugars, aminosugars • carbohydrates are the most abundant compounds found in nature (cellulose: 100 billion tons annually) CARBOHYDRATES Polyhydroxy aldehydes or ketones, or substances that yield these compounds on hydrolysis Aldehyde O H group Both can be C CH2OH written Keto C H O or H- C - OH 3 6 3 C O group (CH2O)3 CH2OH CH2OH Glyceraldehyde Dihydroxyacetone Carbohydrate with an aldehyde group: Aldose Carbohydrate with a ketone group: Ketose Empirical formula of many simpler carbohydrates: (CH2O)n (hence the name hydrate of carbon) Characteristic • Most carbohydrates are found naturally in bound form rather than as simple sugars • Polysaccharides (starch, cellulose, inulin, gums) • Glycoproteins and proteoglycans (hormones, blood group substances, antibodies) • Glycolipids (cerebrosides, gangliosides) • Glycosides • Mucopolysaccharides (hyaluronic acid) • Nucleic acids Function • A storage form of energy in the body. • Cell surface recognition receptors (by other cells, hormones, viruses) • Cell surface antigens, e.g. blood groups. • Gastric glycoprotein (mucin) contains more than 60% carbohydrate. • A structural component of many organisms: a) cell walls of bacteria b) exoskeleton of insects c) cellulose of plants. • intermediates in the biosynthesis of other basic biochemical entities (fats and -
Metabolism of Pectic Substances by Rumen Bacteria Russell Pressey Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1962 Metabolism of pectic substances by rumen bacteria Russell Pressey Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Biochemistry Commons Recommended Citation Pressey, Russell, "Metabolism of pectic substances by rumen bacteria " (1962). Retrospective Theses and Dissertations. 2316. https://lib.dr.iastate.edu/rtd/2316 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. This dissertation has been 63—2994 microfilmed exactly as received PRESSE Y, Russell, 1935- METABOLISM OF PECTIC SUBSTANCES BY RUMEN BACTERIA. Iowa State University of Science and Technology Ph.D., 1962 Chemistry, biological University Microfilms, Inc., Ann Arbor, Michigan METABOLISM OF PECTIC SUBSTANCES BY RUMEN BACTERIA by Russell Pressey A Dissertation Submitted to the Graduate Faculty in Partial Fulfillment of The Requirements for the Degree of DOCTOR OF PHILOSOPHY Major Subject: Biochemistry Approv ed: Signature was redacted for privacy. In Charge of Major Work Signature was redacted for privacy. Head of Major Department Signature was redacted for privacy. De te College Iowa State University -
DISSERTATION Presented in Partial Eulfillment of the Requirements For
ÎHTRATED AMD BENZYLATED .ALIXDÎHC ACIDS AMD IKEIR USE IN SYNTHESES DISSERTATION Presented in Partial Eulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State Universi ty B y ADEX ROSENTHAL, D.Sc., B.Ed. , M.Sc, The Ohio State University 19 52 Approved hy: Adviser 1 TABLE OF CONTENTS PART I Page I. OBJECTIVE..................................... 1 II. HISTORICAL.................................... 2 A . General.................................. 2 B. AldonicAcids and Their Lactones........ 3 C. Preparation of D-Gluconic and D- Galactonic Acids........................ 7 1, Commercial Preparation of D-Glu conic Acid by Fermentation Methods............. 7 2, Preparation of D-Galactonic Acid... 10 3, Chemical and Electrolytic Methods of Preparing Aldonic Acids........ 11 D . Preparation of Aldonamides.............. 14- E. Preparation of Sugar Nitrates 15 1. General............... 15 2. Nitration of Carbohydrates with Nitrogen Pentoxide.............. 18 (a) Nitrogen Pentoxide......,,..,, IS (b) Use of Nitrogen Pentoxide as a Nitrating Agent.......... 19 F . Fully 0—Esterifled Aldonic Acids....... 21 G. Reaction of Diazomethane with Sugar Acids....... 24. 1. Diazomethane..................... 24- 2. Action of Diazomethane on Aldonic Acids....................... 27 S81010 11 TABLE OF CONTENTS (cont.) Page H, Stabilizers of Nitrated Carbohydrates.. 27 I, Stability Tests of Nitrated Carbohydrates............................ 30 J. Double-Base Powders and Films........ 32 III. EXPERIMENTAL................................. 34 A. Synthesis of Methyl D-Galactonate Pentanitrate ....... 34 1. Preparation of D-Galactonamide 34 2. Attempted Nitration of D-Galac- tonamide with Nitric-Sulfuric Acids...... 35 3. Attempted Nitration of D-Galac— tonamide with Nitric-Acetic Acids,. 35 4. Preparation of Nitrogen Pentoxide,. 36 5. Synthesis of D—Galactonamide 0-Pentanitrate...... 3B 6. Synthesis of D-Galactonic Acid.,.., Pentanitrate..