Genomewide and Enzymatic Analysis Reveals Efficient D-Galacturonic
RESEARCH ARTICLE Molecular Biology and Physiology Genomewide and Enzymatic Analysis Reveals Efficient D-Galacturonic Acid Metabolism in the Basidiomycete Yeast Rhodosporidium toruloides Ryan J. Protzko,a,b Christina A. Hach,c Samuel T. Coradetti,b,d Magdalena A. Hackhofer,c Sonja Magosch,c Nils Thieme,c Gina M. Geiselman,b,d Adam P. Arkin,b,d,f Jeffrey M. Skerker,b,d,f John E. Dueber,b,e,f J. Philipp Benzc aDepartment of Molecular and Cell Biology, University of California, Berkeley, California, USA bEnergy Biosciences Institute, Berkeley, California, USA cHolzforschung München, TUM School of Life Sciences Weihenstephan, Technische Universität München, Freising, Germany dEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA eBiological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA fDepartment of Bioengineering, University of California, Berkeley, California, USA ABSTRACT Biorefining of renewable feedstocks is one of the most promising routes to replace fossil-based products. Since many common fermentation hosts, such as Saccharomyces cerevisiae, are naturally unable to convert many component plant cell wall polysaccharides, the identification of organisms with broad catabolism capabilities represents an opportunity to expand the range of substrates used in fer- mentation biorefinery approaches. The red basidiomycete yeast Rhodosporidium to- ruloides is a promising and robust host for lipid- and terpene-derived chemicals. Pre- vious studies demonstrated assimilation of a range of substrates, from C5/C6 sugars to aromatic molecules similar to lignin monomers. In the current study, we analyzed the potential of R. toruloides to assimilate D-galacturonic acid, a major sugar in many pectin-rich agricultural waste streams, including sugar beet pulp and citrus peels.
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