Spiroplasma Spp.: a Plant, Arthropod, Animal and Human Pathogen
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Spiroplasma Arp Sequences: Relationships
SPIROPLASMA ARP SEQUENCES: RELATIONSHIPS WITH EXTRACHROMOSOMAL ELEMENTS By BHARAT DILIP JOSHI Bachelor of Science University of Pune, India 1995 Master of Science University of Pune, India 1997 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY July, 2006 SPIROPLASMA ARP SEQUENCES: RELATIONSHIPS WITH EXTRACHROMOSOMAL ELEMENTS Dissertation Approved: Dr. Ulrich K. Melcher Dissertation Adviser Dr. Andrew J. Mort Dr. Robert L. Matts Dr. Richard C. Essenberg ________________________________________________ Dr. Jacqueline Fletcher Dr. A. Gordon Emslie Dean of the Graduate College ii TABLE OF CONTENTS Chapter Page I. LITERATURE REVIEW ............................................................................... 1 Background ........................................................................................... 1 Economic Importance............................................................................ 1 Classification ......................................................................................... 2 Transmission in Nature ......................................................................... 3 Molecular Mollicute-host Interactions .................................................. 4 Molecular Spiroplasma-host Interactions ............................................. 4 Mollicute Extrachromosomal DNAs .................................................... 7 Objectives of the Present Study ........................................................... -
White Satin Moth
Utah Plant Pest UTAH PESTS Diagnostic Laboratory USU Extension Spring 2018 / QUARTERLY Vol. XII NEWSLETTER IN THIS ISSUE Is Biochar Worth it for Utah’s Vegetable Producers? Is Biochar worth it for Utah’s Vegetable Producers? p. 01 USU Extension Biochar Study p. 03 The Mystery of the Notched Leaves p. 04 New Codling Moth Biofix- Setting Model p. 06 Invasive Pest Spotlight: White Biochar is made by burning biomass at very high temperatures with low oxygen. The final Satin Moth p. 08 product is high in carbon and is used as a soil amendment. Spider Mites Like it Hot with Biochar has been shown to have long- What are the Potential Neonics term benefits for the environment, in terms Advantages in Agriculture? p. 09 of sequestering carbon in the soil. But for 5 Vegetable Insect Pests of intensive agricultural production, the short Most biochars have low nitrogen Utah and When to Watch answer to this question is that biochar is concentrations and thus any inherent for Them not quite ready for wide-scale adoption. fertilizer value is minimal and temporary. p. 11 Some factors that need to be considered in The recommendation is that biochar is Worker Protection Standard applying biochar to the soil are initial soil applied to the soil just once, acting as a Training Requirements health, the source and production method conditioner, and that nutrient amendments for Growers of the char, and the variable or unknown should also be applied yearly (if needed). p. 12 application rates. In some cases, crop yield Some research studies have found the may be marginally increased, but this benefit following benefits of a one-time biochar IPM in the News p. -
1 Appendix 3. Gulf Islands Taxonomy Report
Appendix 3. Gulf Islands Taxonomy Report Class Order Family Genus Species Arachnida Araneae Agelenidae Agelenopsis Agelenopsis utahana Eratigena Eratigena agrestis Amaurobiidae Callobius Callobius pictus Callobius severus Antrodiaetidae Antrodiaetus Antrodiaetus pacificus Anyphaenidae Anyphaena Anyphaena aperta Anyphaena pacifica Araneidae Araneus Araneus diadematus Clubionidae Clubiona Clubiona lutescens Clubiona pacifica Clubiona pallidula Cybaeidae Cybaeus Cybaeus reticulatus Cybaeus signifer Cybaeus tetricus Dictynidae Emblyna Emblyna peragrata Gnaphosidae Sergiolus Sergiolus columbianus Zelotes Zelotes fratris Linyphiidae Agyneta Agyneta darrelli Agyneta fillmorana Agyneta protrudens Bathyphantes Bathyphantes brevipes Bathyphantes keeni 1 Centromerita Centromerita bicolor Ceratinops Ceratinops latus Entelecara Entelecara acuminata Erigone Erigone aletris Erigone arctica Erigone cristatopalpus Frederickus Frederickus coylei Grammonota Grammonota kincaidi Linyphantes Linyphantes nehalem Linyphantes nigrescens Linyphantes pacificus Linyphantes pualla Linyphantes victoria Mermessus Mermessus trilobatus Microlinyphia Microlinyphia dana Neriene Neriene digna Neriene litigiosa Oedothorax Oedothorax alascensis Pityohyphantes Pityohyphantes alticeps Pocadicnemis Pocadicnemis pumila Poeciloneta Poeciloneta fructuosa Saaristoa Saaristoa sammamish Scotinotylus Scotinotylus sp. 5GAB Semljicola Semljicola sp. 1GAB Sisicottus Spirembolus Spirembolus abnormis Spirembolus mundus Tachygyna Tachygyna ursina Tachygyna vancouverana Tapinocyba Tapinocyba -
Molecular Systematics of Noctuoidea (Insecta, Lepidoptera)
TURUN YLIOPISTON JULKAISUJA ANNALES UNIVERSITATIS TURKUENSIS SARJA - SER. AII OSA - TOM. 268 BIOLOGICA - GEOGRAPHICA - GEOLOGICA MOLECULAR SYSTEMATICS OF NOCTUOIDEA (INSECTA, LEPIDOPTERA) REZA ZAHIRI TURUN YLIOPISTO UNIVERSITY OF TURKU Turku 2012 From the Laboratory of Genetics, Division of Genetics and Physiology, Department of Biology, University of Turku, FIN-20012, Finland Supervised by: Docent Niklas Wahlberg University of Turku Finland Co-advised by: Ph.D. J. Donald Lafontaine Canadian National Collection of Insects, Arachnids and Nematodes Canada Ph.D. Ian J. Kitching Natural History Museum U.K. Ph.D. Jeremy D. Holloway Natural History Museum U.K. Reviewed by: Professor Charles Mitter University of Maryland U.S.A. Dr. Tommi Nyman University of Eastern Finland Finland Examined by: Dr. Erik J. van Nieukerken Netherlands Centre for Biodiversity Naturalis, Leiden The Netherlands Cover image: phylogenetic tree of Noctuoidea ISBN 978-951-29-5014-0 (PRINT) ISBN 978-951-29-5015-7 (PDF) ISSN 0082-6979 Painosalama Oy – Turku, Finland 2012 To Maryam, my mother and father MOLECULAR SYSTEMATICS OF NOCTUOIDEA (INSECTA, LEPIDOPTERA) Reza Zahiri This thesis is based on the following original research contributions, which are referred to in the text by their Roman numerals: I Zahiri, R, Kitching, IJ, Lafontaine, JD, Mutanen, M, Kaila, L, Holloway, JD & Wahlberg, N (2011) A new molecular phylogeny offers hope for a stable family-level classification of the Noctuoidea (Lepidoptera). Zoologica Scripta, 40, 158–173 II Zahiri, R, Holloway, JD, Kitching, IJ, Lafontaine, JD, Mutanen, M & Wahlberg, N (2012) Molecular phylogenetics of Erebidae (Lepidoptera, Noctuoidea). Systematic Entomology, 37,102–124 III Zaspel, JM, Zahiri, R, Hoy, MA, Janzen, D, Weller, SJ & Wahlberg, N (2012) A molecular phylogenetic analysis of the vampire moths and their fruit-piercing relatives (Lepidoptera: Erebidae: Calpinae). -
2983 Spiroplasmas: Evolutionary Relationships and Biodiversity Laura B. Regassa 1 and Gail E. Gasparich 2
[Frontiers in Bioscience 11, 2983-3002, September 1, 2006] Spiroplasmas: evolutionary relationships and biodiversity Laura B. Regassa 1 and Gail E. Gasparich 2 1 Department of Biology, Georgia Southern University, PO Box 8042, Statesboro, GA 30460 and 2 Department of Biological Sciences, Towson University, 8000 York Road, Towson, MD 21252 TABLE OF CONTENTS 1. Abstract 2. Introduction 3. Spiroplasma Systematics 3.1. Taxonomy 3.1.1. Spiroplasma species concept 3.1.2. Current requirements for classification of Spiroplasma species 3.1.3. Polyphasic taxonomy 3.2. Molecular Phylogeny 3.2.1. Evolutionary relationship of spiroplasmas to other Eubacteria 3.2.2. Evolutionary relationships within the genus Spiroplasma 3.2.2.1. The Ixodetis clade 3.2.2.2. The Citri-Chrysopicola-Mirum clade 3.2.2.3. The Apis clade 3.2.2.4. The Mycoides-Entomoplasmataceae clade 3.2.3. Comparative genomics 4. Biodiversity 4.1. Host Range and Interactions 4.1.1. Insect pathogens 4.1.2. Plant pathogens 4.1.3. Higher order invertebrate pathogens 4.1.4. Vertebrate pathogenicity 4.2. Host Specificity 4.3. Biogeography 5. Perspectives 6. Acknowledgments 7. References 1. ABSTRACT Spiroplasmas are wall-less descendants of Gram- 34 groups based on cross-reactivity of surface antigens. positive bacteria that maintain some of the smallest Three of the serogroups contain closely related strain genomes known for self-replicating organisms. These complexes that are further divided into subgroups. helical, motile prokaryotes exploit numerous habitats, but Phylogenetic reconstructions based on 16S rDNA are most often found in association with insects. Co- sequence strongly support the closely related evolution with their insect hosts may account for the highly serogroups. -
Some Biological Features of Mollicutes
Revista Latinoamericana de Microbiología Volumen Número Abril-Junio Volume 44 Number 2 April-June 2002 Artículo: Some biological features of Mollicutes Derechos reservados, Copyright © 2002: Asociación Mexicana de Microbiología, AC Otras secciones de Others sections in este sitio: this web site: ☞ Índice de este número ☞ Contents of this number ☞ Más revistas ☞ More journals ☞ Búsqueda ☞ Search edigraphic.com MICROBIOLOGÍA ORIGINAL ARTICLE Some biological features of Mollicutes Revista Latinoamericana de Vol. 44, No. 2 José Antonio Rivera-Tapia,* María Lilia Cedillo-Ramírez* & Constantino Gil Juárez* April - June. 2002 pp. 53 - 57 ABSTRACT. Mycoplasmas are a bacterial group that is classified RESUMEN. Los Micoplasmas son un grupo de bacterias que perte- in the Mollicute class which includes Mycoplasmas, Spiroplasmas necen a la clase Mollicutes, la cual comprende a los Micoplasmas, and Acholeplasmas. One hundred and seventy six species have been Spiroplasmas y Acholeplasmas. Se han descrito 176 especies y se described in this group. Mycoplasmas are the smallest self living caracterizan por ser los procariontes más pequeños de vida libre que prokaryotes, they do not have a bacterial wall, their genomic size existen, carecen de pared celular, el tamaño de su genoma oscila en- ranges from 577 to 2220 bpk, they are nutritional exigent so it is tre 577 y 2220 kpb, son exigentes desde el punto de vista nutricional hard to culture them, but the development of molecular biology y por lo tanto difíciles de cultivar, por lo que el desarrollo de técni- techniques has let us detect more mycoplasmas in different hosts. cas de biología molecular ha permitido su detección en un mayor Mycoplasmas have been associated to acute and chronic diseases número de hospederos. -
Lepidoptera: Erebidae) and Phylogenetic Relationships Within Noctuoidea
The complete mitochondrial genome of Dysgonia stuposa (Lepidoptera: Erebidae) and phylogenetic relationships within Noctuoidea Yuxuan Sun*, Yeshu Zhu*, Chen Chen, Qunshan Zhu, Qianqian Zhu, Yanyue Zhou, Xiaojun Zhou, Peijun Zhu, Jun Li and Haijun Zhang College of Life Sciences, Huaibei Normal University, Huaibei, Anhui, China * These authors contributed equally to this work. ABSTRACT To determine the Dysgonia stuposa mitochondrial genome (mitogenome) structure and to clarify its phylogenetic position, the entire mitogenome of D. stuposa was sequenced and annotated. The D. stuposa mitogenome is 15,721 bp in size and contains 37 genes (protein-coding genes, transfer RNA genes, ribosomal RNA genes) usually found in lepidopteran mitogenomes. The newly sequenced mitogenome contained some common features reported in other Erebidae species, e.g., an A+T biased nucleotide composition and a non-canonical start codon for cox1 (CGA). Like other insect mitogenomes, the D. stuposa mitogenome had a conserved sequence `ATACTAA' in an intergenic spacer between trnS2 and nad1, and a motif `ATAGA' followed by a 20 bp poly-T stretch in the A+T rich region. Phylogenetic analyses supported D. stuposa as part of the Erebidae family and reconfirmed the monophyly of the subfamilies Arctiinae, Catocalinae and Lymantriinae within Erebidae. Subjects Entomology, Genomics, Taxonomy Keywords Phylogenetic relationship, D. stuposa, Mitochondrial genome, Noctuoidea Submitted 26 July 2019 Accepted 21 February 2020 Published 16 March 2020 INTRODUCTION Corresponding authors Dysgonia stuposa (Lepidoptera: Erebidae) is an important pest species, and it has a wide Jun Li, [email protected] Haijun Zhang, [email protected] distribution throughout the southern and eastern parts of Asia. -
Phylogenetic Analysis of Spiroplasmas from Three Freshwater Crustaceans (Eriocheir Sinensis, Procambarus Clarkia and Penaeus Vannamei) in China
Journal of Invertebrate Pathology 99 (2008) 57–65 Contents lists available at ScienceDirect Journal of Invertebrate Pathology journal homepage: www.elsevier.com/locate/yjipa Phylogenetic analysis of Spiroplasmas from three freshwater crustaceans (Eriocheir sinensis, Procambarus clarkia and Penaeus vannamei) in China Keran Bi, Hua Huang, Wei Gu, Junhai Wang, Wen Wang * Jiangsu Key Laboratory for Biodiversity & Biotechnology, College of Life Sciences, Nanjing Normal University, 1 Wenyuan Road, Nanjing 210046, China article info abstract Article history: Disease epizootics in freshwater culture crustaceans (crab, crayfish and shrimp) gained high attention Received 19 December 2007 recently in China, due to intensive developments of freshwater aquacultures. Spiroplasma was identified Accepted 18 June 2008 as a lethal pathogen of the above three freshwater crustaceans in previous studies. Further characteriza- Available online 24 June 2008 tion of these freshwater crustacean Spiroplasma strains were analyzed in the current study. Phylogenetic position was investigated by analysis of partial nucleotide sequences of 16S ribosomal RNA (rRNA), gyrB Keywords: and rpoB genes, together with complete sequencing of 23S rRNA gene and 16S–23S rRNA intergenetic Crustacean spacer regions (ISRs). Phylogenetic analysis of these sequences showed that the above-mentioned three 16S rRNA freshwater crustacean Spiroplasma strains were identical and had a close relationship with Spiroplasma 23S rRNA 16S–23S rRNA intergenetic spacer regions mirum. Furthermore, the genomic size, serological studies and experimental infection characteristics con- (ISRs) firmed that three freshwater crustacean Spiroplasma strains are a single species other than traditional S. gyrB mirum. Therefore, these data suggest that a single species of Spiroplasma infects all three investigated rpoB freshwater crustaceans in China, and is a potential candidate for a new species within the Spiroplasma Genomic size genus. -
Serological Classification of Spiroplasmas: Current Status
THE YALE JOURNAL OF BIOLOGY AND MEDICINE 56 (1983), 453-459- Serological Classification of Spiroplasmas: Current Status R.F. WHITCOMB, Ph.D.,a T.B. CLARK, Ph.D.,a J.G. TULLY, Ph.D.,b T.A. CHEN, Ph.D.,c AND J.M. BOVI2, Ph.D.d aPlant Protection Institute, USDA, Beltsville, Maryland; bErederick Cancer Center, NIH, Frederick, Maryland; cDepartment of Plant Pathology, Rutgers University, New Brunswick, New Jersey; dLaboratoire de Biologie Cellulaire et Moleculaire, INRA, Pont-de-la Maye, France Received January 4, 1983 Data concerning serological classification of spiroplasmas are in good agreement, but slightly different numerical designations have been given to existing groups. It is proposed that a stan- dardized system be adopted based on information developed mainly by the IRPCM working team on spiroplasmas. The type species (Spiroplasma citri) should be redeflned to include only the agent of citrus stubborn disease (subgroup 1-1). Six other subgroups, including three pro- posed by Bove et al. in this volume (1-5, 1-6, and 1-7), are members of the Group I complex. Because subgroups 1-1, 1-2, and 1-3 (1) show significant reciprocal differences in DNA-DNA homology and two-dimensional electrophoretic protein profiles, (2) occupy exclusive habitats, (3) are each associated with important diseases, and (4) consist of clusters of very similar or identical strains, it is suggested that Latin binomials could be assigned to subgroups I-2 and 1-3. It is proposed that those criteria could serve as general guidelines for consideration of subgroups for species status in the class Mollicutes. -
Lepidoptera: Erebidae: Lymantriinae) of Potential Concern to the NAPPO Region
NAPPO Science and Technology Document ST 07. Risks Associated with the Introduction of Exotic Tussock Moth Species (Lepidoptera: Erebidae: Lymantriinae) of Potential Concern to the NAPPO Region Prepared by the NAPPO Lymantriid Expert Group Dave Holden, (CFIA), Thierry Poiré (CFIA), Glenn Fowler (APHIS-PPQ), Gericke Cook (APHIS- VS), Daniel Bravo (SENASICA), Norma Patricia Miranda (SEMARNAT), María Eugenia Guerrero (SEMARNAT), Eduardo Jiménez Quiroz (SEMARNAT), Gustavo Hernández (SEMARNAT), Clemente de Jesús García Ávila (SENASICA) and Oscar Trejo (SEMARNAT). The Secretariat of the North American Plant Protection Organization (NAPPO) 1730 Varsity Drive, Suite 145 Raleigh, NC 27606-5202 United States of America Virtual approval of NAPPO Products Given the current travel restrictions brought about by the COVID-19 pandemic, the NAPPO Management Team unanimously endorsed a temporary process for virtual approval of its products. Beginning in January 2021 and until further notice, this statement will be included with each approved NAPPO product in lieu of the Executive Committee original signature page. The Science and Technology Document – Risks Associated with the Introduction of Exotic Tussock Moth Species (Lepidoptera: Erebidae: Lymantriinae) of Potential Concern to the NAPPO Region - was approved by the North American Plant Protection Organization (NAPPO) Executive Committee – see approval dates below each signature - and is effective from the latest date below. Approved by: Greg Wolff Osama El-Lissy Greg Wolff Osama El-Lissy Executive Committee Member Executive Committee Member Canada United States Date March 19, 2021 Date March 19, 2021 Francisco Ramírez y Ramírez Francisco Ramírez y Ramírez Executive Committee Member Mexico Date March 19, 2021 2 | P a g e 3 | P a g e Content Page Virtual approval of NAPPO Products ............................................................................................... -
Characterization of the Complete Mitochondrial Genome of Leucoma
www.nature.com/scientificreports OPEN Characterization of the Complete Mitochondrial Genome of Leucoma salicis (Lepidoptera: Lymantriidae) Received: 27 May 2016 Accepted: 18 November 2016 and Comparison with Other Published: 15 December 2016 Lepidopteran Insects Yu-Xuan Sun, Lei Wang, Guo-Qing Wei, Cen Qian, Li-Shang Dai, Yu Sun, Muhammad Nadeem Abbas, Bao-Jian Zhu & Chao-Liang Liu The complete mitochondrial genome (mitogenome) of Leucoma salicis (Lepidoptera: Lymantriidae) was sequenced and annotated. It is a circular molecule of 15,334 bp, containing the 37 genes usually present in insect mitogenomes. All protein-coding genes (PCGs) are initiated by ATN codons, other than cox1, which is initiated by CGA. Three of the 13 PCGs had an incomplete termination codon, T or TA, while the others terminated with TAA. The relative synonymous codon usage of the 13 protein- coding genes (PCGs) was consistent with those of published lepidopteran sequences. All tRNA genes had typical clover-leaf secondary structures, except for the tRNASer (AGN), in which the dihydrouridine (DHU) arm could not form a stable stem-loop structure. The A + T-rich region of 325 bp had several distinctive features, including the motif ‘ATAGA’ followed by an 18 bp poly-T stretch, a microsatellite- Met like (AT)7 element, and an 11-bp poly-A present immediately upstream of tRNA . Relationships among 32 insect species were determined using Maximum Likelihood (ML), Neighbor Joining (NJ) and Bayesian Inference (BI) phylogenetic methods. These analyses confirm thatL. salicis belongs to the Lymantriidae; and that Lymantriidae is a member of Noctuoidea, and is a sister taxon to Erebidae, Nolidae and Noctuidae, most closely related to Erebidae. -
The Relative Abundance and Diversity of Parasitoids of the Browntail Moth (Euproctis Chrysorrhoea L.) and Factors That Influence Their Opulationp Dynamics
The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library Spring 5-1-2020 The Relative Abundance and Diversity of Parasitoids of the Browntail Moth (Euproctis chrysorrhoea L.) and Factors that Influence Their opulationP Dynamics Karla S. Boyd University of Maine, [email protected] Follow this and additional works at: https://digitalcommons.library.umaine.edu/etd Part of the Entomology Commons Recommended Citation Boyd, Karla S., "The Relative Abundance and Diversity of Parasitoids of the Browntail Moth (Euproctis chrysorrhoea L.) and Factors that Influence Their opulationP Dynamics" (2020). Electronic Theses and Dissertations. 3172. https://digitalcommons.library.umaine.edu/etd/3172 This Open-Access Thesis is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. For more information, please contact [email protected]. THE RELATIVE ABUNDANCE AND DIVERSITY OF PARASITOIDS OF THE BROWNTAIL MOTH (EUPROCTIS CHRYSORRHOEA L.) AND FACTORS THAT INFLUENCE THEIR POPULATION DYNAMICS By Karla Stryker Boyd B.S. University of Maine, 2016 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Entomology) The Graduate School The University of Maine May 2020 Advisory Committee: Eleanor Groden, Professor Emerita of Entomology, School of Biology and Ecology, Advisor Francis Drummond, Professor Emeritus of Insect Ecology and Insect Pest Management Charlene Donahue, Forest Entomologist, Emerita, Maine Forest Service William Livingston, Associate Professor of Forest Resources, School of Forest Resources Seanna Annis, Associate Professor of Mycology, School of Biology and Ecology i © 2020 Karla Stryker Boyd All Rights Reserved ii THE RELATIVE ABUNDANCE AND DIVERSITY OF PARASITOIDS OF THE BROWNTAIL MOTH (EUPROCTIS CHRYSORRHOEA L.) AND FACTORS THAT INFLUENCE THEIR POPULATION DYNAMICS By Karla Stryker Boyd Thesis Advisor: Dr.