Serological Classification of Spiroplasmas: Current Status
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Spiroplasma Arp Sequences: Relationships
SPIROPLASMA ARP SEQUENCES: RELATIONSHIPS WITH EXTRACHROMOSOMAL ELEMENTS By BHARAT DILIP JOSHI Bachelor of Science University of Pune, India 1995 Master of Science University of Pune, India 1997 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY July, 2006 SPIROPLASMA ARP SEQUENCES: RELATIONSHIPS WITH EXTRACHROMOSOMAL ELEMENTS Dissertation Approved: Dr. Ulrich K. Melcher Dissertation Adviser Dr. Andrew J. Mort Dr. Robert L. Matts Dr. Richard C. Essenberg ________________________________________________ Dr. Jacqueline Fletcher Dr. A. Gordon Emslie Dean of the Graduate College ii TABLE OF CONTENTS Chapter Page I. LITERATURE REVIEW ............................................................................... 1 Background ........................................................................................... 1 Economic Importance............................................................................ 1 Classification ......................................................................................... 2 Transmission in Nature ......................................................................... 3 Molecular Mollicute-host Interactions .................................................. 4 Molecular Spiroplasma-host Interactions ............................................. 4 Mollicute Extrachromosomal DNAs .................................................... 7 Objectives of the Present Study ........................................................... -
Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions
Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions Weijie Huang, Paola Reyes-Caldas, Marina Mann, Shirin Seifbarghi, Alexandra Kahn, Rodrigo P.P. Almeida, Laure Béven, Michelle Heck, Saskia Hogenhout, Gitta Coaker To cite this version: Weijie Huang, Paola Reyes-Caldas, Marina Mann, Shirin Seifbarghi, Alexandra Kahn, et al.. Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions. Molecular Plant, Cell Press/Oxford UP, 2020, 13 (10), pp.1379-1393. 10.1016/j.molp.2020.08.010. hal-03035576 HAL Id: hal-03035576 https://hal.inrae.fr/hal-03035576 Submitted on 2 Dec 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - NonCommercial - NoDerivatives| 4.0 International License Molecular Plant ll Perspective Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions Weijie Huang1,9, Paola Reyes-Caldas2,9, Marina Mann3,9, Shirin Seifbarghi2,9, Alexandra Kahn4,9, Rodrigo P.P. Almeida4, Laure Be´ ven5, Michelle Heck3,6,7, Saskia A. Hogenhout1,8 and Gitta Coaker2,* 1Department of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK 2Department of Plant Pathology, University of California, Davis, CA, 95616, USA 3Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY 14853, USA 4Department of Environmental Science, Policy and Management, University of California, Berkeley, CA 94720, USA 5UMR 1332 Biologie du Fruit et Pathologie, Univ. -
Scope: Munis Entomology & Zoology Publishes a Wide Variety of Papers
_____________Mun. Ent. Zool. Vol. 5, Suppl., October 2010________ 1011 A PRELIMINARY LIST OF HETEROPTERA COLLECTED IN MARDIN AND SIIRT PROVINCES FROM SOUTH- EASTERN ANATOLIA OF TURKEY (HEMIPTERA) Armand Matocq* and İnanç Özgen** * Muséum national d’Histoire naturelle, Départment Systématique & Evolution (Entomologie), 45 rue Buffon, F – 75005 Paris, FRANCE. E-mail: [email protected] ** Plant Protection, Department of Agricultural Faculty of Dicle University, Diyarbakır, TURKEY. E-mail: [email protected] [Matocq, A. & Özgen, İ. 2010. A preliminary list of Heteroptera collected in Mardin and Siirt provinces from South-Eastern Anatolia of Turkey (Hemiptera). Munis Entomology & Zoology, 5, suppl. : 1011-1019] ABSTRACT: Fifty eight species and subspecies of Hemiptera, Heteroptera are recorded from Mardin and Siirt provinces. Specimens were collected by light trap in Pistachio and Cherry orchards during July and August 2009. The species belong to 50 genera and 11 families. The two best represented families are Miridae and Lygaeidae (respectively 16 genera and 27 genera). No species appears to be pest for agriculture, but surprisingly no representative of Pentatomidae, Scutelleridae or Tingidae were captured by the light trap. Eight species and subspecies (seven mirids and one reduviid) are newly reported for Turkey. KEY WORDS: Hemiptera, Heteroptera, fauna, Southeastern Anatolia, Turkey. Heteroptera species of the Southeastern Turkey are still poorly known and, as far as we know, no faunistic list exists until now for the suborder for this part of Turkey. Nevertheless some data exist. Puton (1892) and Puton & Noualhier (1895) were probably the first to bring important information most concerning the Eastern mediterranean region: they gave a list of more than 200 heteropteran species and subspecies collected in Akbez, in “Amanos Mountains (North of Syria)”, a locality now in Turkey (Hatay province). -
Spiroplasma Citri: Fifteen Years of Research
Spiroplasma citri: Fifteen Years of Research J. M. Bove Dedicated to Richard Guillierme* I-HISTORICAL SIGNIFICANCE mas, molecular and cellular biology of OF SPIROPLASMA CITRI spiroplasmas, spiroplasma pathogen- icity, ecology of Spiroplasma citri, It is now well recognized that the biology and ecology of Spiroplasma agent of citrus stubborn disease was kunkelii. Volume IV of IOCV's Virus the first mollicute of plant origin to and Virus-like diseases of citrus (7) have been cultured (19, 33) and for also covers isolation, cultivation and which Koch's postulates were fulfilled characterization of S. citri. Stubborn (25). The serological, biological and disease has been reviewed (24). biochemical characterizations of the Methods in Mycoplasmology offers in citrus agent revealed it to be a new two volumes the techniques used in mollicute, one with helical morphol- the study of mollicutes including the ogy and motility (34), hence the name spiroplasmas (30, 37). These proceed- Spiroplasma citri, adopted from ings also cover epidemiology of S. Davis et al. (14, 15) who had given citri in the Old World (4) and spiro- the trivial name spiroplasma to helical plasma gene structure and expression filaments seen in corn stunt infected plants. These "helices" were cultured (5). and shown to be the agent of corn stunt disease in 1975 (9,44); the agent 11-MAJOR PROPERTIES is now called S~iro~lasmakunkelii OF SPIROPLASMA CITRl (40). The first bre;kthrough in the study of yellows diseases came in 1967 Spiroplasma citri is a mollicute with the discovery of mollicute-like (42). Mollicutes are prokaryotes that organisms (MLO) in plants (17). -
Data Sheet on Spiroplasma Citri
Prepared by CABI and EPPO for the EU under Contract 90/399003 Data Sheets on Quarantine Pests Spiroplasma citri The vectors of Spiroplasma citri are individually included in EU Directive 77/93. Since their importance only arises in relation to S. citri, they are covered in this data sheet. IDENTITY • Spiroplasma citri Name: Spiroplasma citri Saglio et al. Taxonomic position: Bacteria: Tenericutes: Mollicutes Common names: Stubborn, little leaf (English) Stubborn (French) Bayer computer code: SPIRCI EU Annex designation: II/A2 • Circulifer tenellus Name: Circulifer tenellus (Baker) Synonyms: Neoaliturus tenellus (Baker) Eutettix tenellus Baker Taxonomic position: Insecta: Hemiptera: Homoptera: Cicadellidae Common names: Beet leafhopper (English) Cicadelle de la betterave (French) Saltahojas de la remolacha (Spanish) Notes on taxonomy and nomenclature: Oman (1970) argues for the retention of Circulifer and Neoaliturus as separate genera; in his concept both tenellus and haematoceps are placed in Circulifer. Nast (1972) treats the two genera as Neoaliturus notwithstanding Oman's (1970) arguments for the retention of the two genera. He includes 17 species in the Palaearctic region of which 14 are recorded from the Mediterranean Basin. The two species, tenellus and haematoceps, are both included in Circulifer by della Giustina (1989), who reports that tenellus is confirmed in Corsica. Bayer computer code: CIRCTE EU Annex designation: II/A2 • Neoaliturus haematoceps Name: Neoaliturus haematoceps (Mulsant & Rey) Synonyms: Circulifer haematoceps (Mulsant & Rey) Jassus haematoceps Mulsant & Rey Taxonomic position: Insecta: Hemiptera: Homoptera: Cicadellidae Bayer computer code: NEOAHA EU Annex designation: II/A2 (under the name Circulifer haematoceps) HOSTS • Spiroplasma citri The principal economic hosts of S. citri are susceptible Citrus spp. -
Heteroptera, Miridae), Ravageur Du Manguier `Ala R´Eunion Morguen Atiama
Bio´ecologie et diversit´eg´en´etiqued'Orthops palus (Heteroptera, Miridae), ravageur du manguier `aLa R´eunion Morguen Atiama To cite this version: Morguen Atiama. Bio´ecologieet diversit´eg´en´etique d'Orthops palus (Heteroptera, Miridae), ravageur du manguier `aLa R´eunion.Zoologie des invert´ebr´es.Universit´ede la R´eunion,2016. Fran¸cais. <NNT : 2016LARE0007>. <tel-01391431> HAL Id: tel-01391431 https://tel.archives-ouvertes.fr/tel-01391431 Submitted on 3 Nov 2016 HAL is a multi-disciplinary open access L'archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destin´eeau d´ep^otet `ala diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publi´esou non, lished or not. The documents may come from ´emanant des ´etablissements d'enseignement et de teaching and research institutions in France or recherche fran¸caisou ´etrangers,des laboratoires abroad, or from public or private research centers. publics ou priv´es. UNIVERSITÉ DE LA RÉUNION Faculté des Sciences et Technologies Ecole Doctorale Sciences, Technologies et Santé (E.D.S.T.S-542) THÈSE Présentée à l’Université de La Réunion pour obtenir le DIPLÔME DE DOCTORAT Discipline : Biologie des populations et écologie UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical CIRAD - Université de La Réunion Bioécologie et diversité génétique d'Orthops palus (Heteroptera, Miridae), ravageur du manguier à La Réunion par Morguen ATIAMA Soutenue publiquement le 31 mars 2016 à l'IUT de Saint-Pierre, devant le jury composé de : Bernard REYNAUD, Professeur, PVBMT, Université de La Réunion Président Anne-Marie CORTESERO, Professeur, IGEPP, Université de Rennes 1 Rapportrice Alain RATNADASS, Chercheur, HORTSYS, CIRAD Rapporteur Karen McCOY, Directrice de recherche, MiVEGEC, IRD Examinatrice Encadrement de thèse Jean-Philippe DEGUINE, Chercheur, PVBMT, CIRAD Directeur "Je n'ai pas d'obligation plus pressante que celle d'être passionnement curieux" Albert Einstein "To remain indifferent to the challenges we face is indefensible. -
Autumn 2011 Newsletter of the UK Heteroptera Recording Schemes 2Nd Series
Issue 17/18 v.1.1 Het News Autumn 2011 Newsletter of the UK Heteroptera Recording Schemes 2nd Series Circulation: An informal email newsletter circulated periodically to those interested in Heteroptera. Copyright: Text & drawings © 2011 Authors Photographs © 2011 Photographers Citation: Het News, 2nd Series, no.17/18, Spring/Autumn 2011 Editors: Our apologies for the belated publication of this year's issues, we hope that the record 30 pages in this combined issue are some compensation! Sheila Brooke: 18 Park Hill Toddington Dunstable Beds LU5 6AW — [email protected] Bernard Nau: 15 Park Hill Toddington Dunstable Beds LU5 6AW — [email protected] CONTENTS NOTICES: SOME LITERATURE ABSTRACTS ........................................... 16 Lookout for the Pondweed leafhopper ............................................................. 6 SPECIES NOTES. ................................................................18-20 Watch out for Oxycarenus lavaterae IN BRITAIN ...........................................15 Ranatra linearis, Corixa affinis, Notonecta glauca, Macrolophus spp., Contributions for next issue .................................................................................15 Conostethus venustus, Aphanus rolandri, Reduvius personatus, First incursion into Britain of Aloea australis ..................................................17 Elasmucha ferrugata Events for heteropterists .......................................................................................20 AROUND THE BRITISH ISLES............................................21-22 -
New Barn Farm: Environmental Risk Assessment
New Barn Farm: Environmental Risk Assessment 23 October 2020 T1.02 New Barn Farm: Environmental Risk Assessment Prepared for Grundon Sand and Gravel Limited Thames House Oxford Road, Benson, Wallingford, Oxfordshire, OX10 6LX Report reference: 65659R5, October 2020 Report status: Final CONFIDENTIAL New Zealand House, 160-162 Abbey Foregate, Registered Office: Shrewsbury, Shropshire Stantec UK Ltd SY2 6FD Buckingham Court Kingsmead Business Park Telephone: +44 (0)1743 276 100 Frederick Place, London Road Facsimile: +44 (01743 248 600 High Wycombe HP11 1JU Registered in England No. 1188070 New Barn Farm: Environmental Risk Assessment Page i New Barn Farm: Environmental Risk Assessment This report has been prepared by Stantec UK Ltd (Stantec) in its professional capacity as environmental specialists, with reasonable skill, care and diligence within the agreed scope and terms of contract and taking account of the manpower and resources devoted to it by agreement with its client and is provided by Stantec solely for the internal use of its client. The advice and opinions in this report should be read and relied on only in the context of the report as a whole, taking account of the terms of reference agreed with the client. The findings are based on the information made available to Stantec at the date of the report (and will have been assumed to be correct) and on current UK standards, codes, technology and practices as at that time. They do not purport to include any manner of legal advice or opinion. New information or changes in conditions and regulatory requirements may occur in future, which will change the conclusions presented here. -
Plan De Gestion 2015-2025 De La RNN De La Forêt Domaniale De Ceris
Réserve Naturelle Nationale FORET DOMANIALE DE CERISY Plan de Gestion 2015-2025 Rédigé par Sébastien ETIENNE Unité Territoriale de Saint Lô 19 route de Coutances 50180 Agneaux Téléphone :02.33.05.74.39 Mél: [email protected] SOMMAIRE INTRODUCTION ........................................................................................................................ 5 PARTIE 1 : Etat des lieux - Etat des connaissances ................................................................... 7 1 Diagnostic de la réserve naturelle ....................................................................................... 8 1.1 Informations générales sur la réserve naturelle ........................................................... 8 1.1.1 La création de la réserve naturelle .......................................................................................... 8 1.1.2 La localisation de la réserve naturelle ..................................................................................... 9 1.1.3 Historique de la forêt .............................................................................................................. 11 1.1.4 Les limites administratives et la superficie ............................................................................ 12 1.1.5 La gestion de la réserve naturelle .......................................................................................... 13 1.1.6 Le cadre socio-économique général...................................................................................... 14 1.1.7 Les inventaires -
Epidemiology of Spiroplasma Citri in Corsica
Epidemiology of Spiroplasma citri in Corsica P. Brun, S. Riolacci, R. Vogel, A. Fos, J. C. Vignault, J. Lallemand and J. M. BovC ABSTRACT. The leafhopper Neoaliturus (Circu1i;fer) haematoceps has been shown recently to be vector of Spiroplasma citri. N haematoceps is present in Corsica and its distribution on the island has been surveyed. While the leafhopper extends from the coastal dune vegetation up to the "maquis" covered hills and mountains of the interior, it has never been found in citrus orchards. Several host plants of this leafhopper have been identified. S. citri-infected N. haematoceps have been found at certain times in various areas of the east coast of Corsica. N. haematoceps individuals naturally infected with S. citri are able to transmit the causal agent of stubborn to periwinkle plants, but transmission to citrus seedlings has not yet been attained. Wild host plants harboring S. citri are being sought. The leafhopper, Neoaliturus Detection of S. citri in field-col- haematoceps Mulsant & Rey, is pres- lected insects or plants was conducted ent in Corsica (I), as well as other by enzyme-linked immunosorbent countries of the Mediterranean area assay (ELISA) and by culturing the (4), and has been collected recently mycoplasma on artificial media (2,7). from different sites on the island. In some wild vegetation areas, as Since this leafhopper is a vector of well as in the citrus mother blocks of Spiroplasrnu citri (3,5), and stubborn the San Giuliano Research Station, is an important disease for commer- periwinkles were used as indicator cial varieties of citrus in orchards or plant for natural transmission of S. -
Genome Analysis of Spiroplasma Citri Strains from Different Host Plants
Rattner et al. BMC Genomics (2021) 22:373 https://doi.org/10.1186/s12864-021-07637-8 RESEARCH ARTICLE Open Access Genome analysis of Spiroplasma citri strains from different host plants and its leafhopper vectors Rachel Rattner1†, Shree Prasad Thapa2†, Tyler Dang3, Fatima Osman2, Vijayanandraj Selvaraj1, Yogita Maheshwari1, Deborah Pagliaccia3, Andres S. Espindola4, Subhas Hajeri5, Jianchi Chen1, Gitta Coaker2, Georgios Vidalakis3 and Raymond Yokomi1* Abstract Background: Spiroplasma citri comprises a bacterial complex that cause diseases in citrus, horseradish, carrot, sesame, and also infects a wide array of ornamental and weed species. S. citri is transmitted in a persistent propagative manner by the beet leafhopper, Neoaliturus tenellus in North America and Circulifer haematoceps in the Mediterranean region. Leafhopper transmission and the pathogen’s wide host range serve as drivers of genetic diversity. This diversity was examined in silico by comparing the genome sequences of seven S. citri strains from the United States (BR12, CC-2, C5, C189, LB 319, BLH-13, and BLH-MB) collected from different hosts and times with other publicly available spiroplasmas. Results: Phylogenetic analysis using 16S rRNA sequences from 39 spiroplasmas obtained from NCBI database showed that S. citri strains, along with S. kunkelii and S. phoeniceum, two other plant pathogenic spiroplasmas, formed a monophyletic group. To refine genetic relationships among S. citri strains, phylogenetic analyses with 863 core orthologous sequences were performed. Strains that clustered together were: CC-2 and C5; C189 and R8-A2; BR12, BLH-MB, BLH-13 and LB 319. Strain GII3–3X remained in a separate branch. Sequence rearrangements were observed among S. -
2983 Spiroplasmas: Evolutionary Relationships and Biodiversity Laura B. Regassa 1 and Gail E. Gasparich 2
[Frontiers in Bioscience 11, 2983-3002, September 1, 2006] Spiroplasmas: evolutionary relationships and biodiversity Laura B. Regassa 1 and Gail E. Gasparich 2 1 Department of Biology, Georgia Southern University, PO Box 8042, Statesboro, GA 30460 and 2 Department of Biological Sciences, Towson University, 8000 York Road, Towson, MD 21252 TABLE OF CONTENTS 1. Abstract 2. Introduction 3. Spiroplasma Systematics 3.1. Taxonomy 3.1.1. Spiroplasma species concept 3.1.2. Current requirements for classification of Spiroplasma species 3.1.3. Polyphasic taxonomy 3.2. Molecular Phylogeny 3.2.1. Evolutionary relationship of spiroplasmas to other Eubacteria 3.2.2. Evolutionary relationships within the genus Spiroplasma 3.2.2.1. The Ixodetis clade 3.2.2.2. The Citri-Chrysopicola-Mirum clade 3.2.2.3. The Apis clade 3.2.2.4. The Mycoides-Entomoplasmataceae clade 3.2.3. Comparative genomics 4. Biodiversity 4.1. Host Range and Interactions 4.1.1. Insect pathogens 4.1.2. Plant pathogens 4.1.3. Higher order invertebrate pathogens 4.1.4. Vertebrate pathogenicity 4.2. Host Specificity 4.3. Biogeography 5. Perspectives 6. Acknowledgments 7. References 1. ABSTRACT Spiroplasmas are wall-less descendants of Gram- 34 groups based on cross-reactivity of surface antigens. positive bacteria that maintain some of the smallest Three of the serogroups contain closely related strain genomes known for self-replicating organisms. These complexes that are further divided into subgroups. helical, motile prokaryotes exploit numerous habitats, but Phylogenetic reconstructions based on 16S rDNA are most often found in association with insects. Co- sequence strongly support the closely related evolution with their insect hosts may account for the highly serogroups.