(Sipuncula): New Evidence from Confocal Laser Scanning Microscopy and Gene Expression
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Number of Living Species in Australia and the World
Numbers of Living Species in Australia and the World 2nd edition Arthur D. Chapman Australian Biodiversity Information Services australia’s nature Toowoomba, Australia there is more still to be discovered… Report for the Australian Biological Resources Study Canberra, Australia September 2009 CONTENTS Foreword 1 Insecta (insects) 23 Plants 43 Viruses 59 Arachnida Magnoliophyta (flowering plants) 43 Protoctista (mainly Introduction 2 (spiders, scorpions, etc) 26 Gymnosperms (Coniferophyta, Protozoa—others included Executive Summary 6 Pycnogonida (sea spiders) 28 Cycadophyta, Gnetophyta under fungi, algae, Myriapoda and Ginkgophyta) 45 Chromista, etc) 60 Detailed discussion by Group 12 (millipedes, centipedes) 29 Ferns and Allies 46 Chordates 13 Acknowledgements 63 Crustacea (crabs, lobsters, etc) 31 Bryophyta Mammalia (mammals) 13 Onychophora (velvet worms) 32 (mosses, liverworts, hornworts) 47 References 66 Aves (birds) 14 Hexapoda (proturans, springtails) 33 Plant Algae (including green Reptilia (reptiles) 15 Mollusca (molluscs, shellfish) 34 algae, red algae, glaucophytes) 49 Amphibia (frogs, etc) 16 Annelida (segmented worms) 35 Fungi 51 Pisces (fishes including Nematoda Fungi (excluding taxa Chondrichthyes and (nematodes, roundworms) 36 treated under Chromista Osteichthyes) 17 and Protoctista) 51 Acanthocephala Agnatha (hagfish, (thorny-headed worms) 37 Lichen-forming fungi 53 lampreys, slime eels) 18 Platyhelminthes (flat worms) 38 Others 54 Cephalochordata (lancelets) 19 Cnidaria (jellyfish, Prokaryota (Bacteria Tunicata or Urochordata sea anenomes, corals) 39 [Monera] of previous report) 54 (sea squirts, doliolids, salps) 20 Porifera (sponges) 40 Cyanophyta (Cyanobacteria) 55 Invertebrates 21 Other Invertebrates 41 Chromista (including some Hemichordata (hemichordates) 21 species previously included Echinodermata (starfish, under either algae or fungi) 56 sea cucumbers, etc) 22 FOREWORD In Australia and around the world, biodiversity is under huge Harnessing core science and knowledge bases, like and growing pressure. -
Animal Phylum Poster Porifera
Phylum PORIFERA CNIDARIA PLATYHELMINTHES ANNELIDA MOLLUSCA ECHINODERMATA ARTHROPODA CHORDATA Hexactinellida -- glass (siliceous) Anthozoa -- corals and sea Turbellaria -- free-living or symbiotic Polychaetes -- segmented Gastopods -- snails and slugs Asteroidea -- starfish Trilobitomorpha -- tribolites (extinct) Urochordata -- tunicates Groups sponges anemones flatworms (Dugusia) bristleworms Bivalves -- clams, scallops, mussels Echinoidea -- sea urchins, sand Chelicerata Cephalochordata -- lancelets (organisms studied in detail in Demospongia -- spongin or Hydrazoa -- hydras, some corals Trematoda -- flukes (parasitic) Oligochaetes -- earthworms (Lumbricus) Cephalopods -- squid, octopus, dollars Arachnida -- spiders, scorpions Mixini -- hagfish siliceous sponges Xiphosura -- horseshoe crabs Bio1AL are underlined) Cubozoa -- box jellyfish, sea wasps Cestoda -- tapeworms (parasitic) Hirudinea -- leeches nautilus Holothuroidea -- sea cucumbers Petromyzontida -- lamprey Mandibulata Calcarea -- calcareous sponges Scyphozoa -- jellyfish, sea nettles Monogenea -- parasitic flatworms Polyplacophora -- chitons Ophiuroidea -- brittle stars Chondrichtyes -- sharks, skates Crustacea -- crustaceans (shrimp, crayfish Scleropongiae -- coralline or Crinoidea -- sea lily, feather stars Actinipterygia -- ray-finned fish tropical reef sponges Hexapoda -- insects (cockroach, fruit fly) Sarcopterygia -- lobed-finned fish Myriapoda Amphibia (frog, newt) Chilopoda -- centipedes Diplopoda -- millipedes Reptilia (snake, turtle) Aves (chicken, hummingbird) Mammalia -
Invertebrates Invertebrates: • Are Animals Without Backbones • Represent 95% of the Animal Kingdom Animal Diversity Morphological Vs
Invertebrates Invertebrates: • Are animals without backbones • Represent 95% of the animal kingdom Animal Diversity Morphological vs. Molecular Character Phylogeny? A tree is a hypothesis supported or not supported by evidence. Groupings change as new evidence become available. Sponges - Porifera Natural Bath Sponges – over-collected, now uncommon Sponges • Perhaps oldest animal phylum (Ctenphora possibly older) • may represent several old phyla, some now extinct ----------------Ctenophora? Sponges - Porifera • Mostly marine • Sessile animals • Lack true tissues; • Have only a few cell types, cells kind of independent • Most have no symmetry • Body resembles a sac perforated with holes, system of canals. • Strengthened by fibers of spongin, spicules Sponges have a variety of shapes Sponges Pores Choanocyte Amoebocyte (feeding cell) Skeletal Water fiber flow Central cavity Flagella Choanocyte in contact with an amoebocyte Sponges - Porifera • Sessile filter feeder • No mouth • Sac-like body, perforated by pores. • Interior lined by flagellated cells (choanocytes). Flagellated collar cells generate a current, draw water through the walls of the sponge where food is collected. • Amoeboid cells move around in the mesophyll and distribute food. Sponges - Porifera Grantia x.s. Sponge Reproduction Asexual reproduction • Fragmentation or by budding. • Sponges are capable of regeneration, growth of a whole from a small part. Sexual reproduction • Hermaphrodites, produce both eggs and sperm • Eggs and sperm released into the central cavity • Produces -
Sipuncula: an Emerging Model of Spiralian Development and Evolution MICHAEL J
Int. J. Dev. Biol. 58: 485-499 (2014) doi: 10.1387/ijdb.140095mb www.intjdevbiol.com Sipuncula: an emerging model of spiralian development and evolution MICHAEL J. BOYLE1 and MARY E. RICE2 1Smithsonian Tropical Research Institute (STRI), Panama, Republic of Panama and 2Smithsonian Marine Station at Fort Pierce (SMSFP), Florida, USA ABSTRACT Sipuncula is an ancient clade of unsegmented marine worms that develop through a conserved pattern of unequal quartet spiral cleavage. They exhibit putative character modifications, including conspicuously large first-quartet micromeres and prototroch cells, postoral metatroch with exclusive locomotory function, paired retractor muscles and terminal organ system, and a U-shaped digestive architecture with left-right asymmetric development. Four developmental life history patterns are recognized, and they have evolved a unique metazoan larval type, the pelagosphera. When compared with other quartet spiral-cleaving models, sipunculan development is understud- ied, challenging and typically absent from evolutionary interpretations of spiralian larval and adult body plan diversity. If spiral cleavage is appropriately viewed as a flexible character complex, then understudied clades and characters should be investigated. We are pursuing sipunculan models for modern molecular, genetic and cellular research on evolution of spiralian development. Protocols for whole mount gene expression studies are established in four species. Molecular labeling and confocal imaging techniques are operative from embryogenesis through larval development. Next- generation sequencing of developmental transcriptomes has been completed for two species with highly contrasting life history patterns, Phascolion cryptum (direct development) and Nephasoma pellucidum (indirect planktotrophy). Looking forward, we will attempt intracellular lineage tracing and fate-mapping studies in a proposed model sipunculan, Themiste lageniformis. -
R E S E a R C H / M a N a G E M E N T Aquatic and Terrestrial Flatworm (Platyhelminthes, Turbellaria) and Ribbon Worm (Nemertea)
RESEARCH/MANAGEMENT FINDINGSFINDINGS “Put a piece of raw meat into a small stream or spring and after a few hours you may find it covered with hundreds of black worms... When not attracted into the open by food, they live inconspicuously under stones and on vegetation.” – BUCHSBAUM, et al. 1987 Aquatic and Terrestrial Flatworm (Platyhelminthes, Turbellaria) and Ribbon Worm (Nemertea) Records from Wisconsin Dreux J. Watermolen D WATERMOLEN Bureau of Integrated Science Services INTRODUCTION The phylum Platyhelminthes encompasses three distinct Nemerteans resemble turbellarians and possess many groups of flatworms: the entirely parasitic tapeworms flatworm features1. About 900 (mostly marine) species (Cestoidea) and flukes (Trematoda) and the free-living and comprise this phylum, which is represented in North commensal turbellarians (Turbellaria). Aquatic turbellari- American freshwaters by three species of benthic, preda- ans occur commonly in freshwater habitats, often in tory worms measuring 10-40 mm in length (Kolasa 2001). exceedingly large numbers and rather high densities. Their These ribbon worms occur in both lakes and streams. ecology and systematics, however, have been less studied Although flatworms show up commonly in invertebrate than those of many other common aquatic invertebrates samples, few biologists have studied the Wisconsin fauna. (Kolasa 2001). Terrestrial turbellarians inhabit soil and Published records for turbellarians and ribbon worms in leaf litter and can be found resting under stones, logs, and the state remain limited, with most being recorded under refuse. Like their freshwater relatives, terrestrial species generic rubric such as “flatworms,” “planarians,” or “other suffer from a lack of scientific attention. worms.” Surprisingly few Wisconsin specimens can be Most texts divide turbellarians into microturbellarians found in museum collections and a specialist has yet to (those generally < 1 mm in length) and macroturbellari- examine those that are available. -
Fauna of Australia 4A Phylum Sipuncula
FAUNA of AUSTRALIA Volume 4A POLYCHAETES & ALLIES The Southern Synthesis 5. PHYLUM SIPUNCULA STANLEY J. EDMONDS (Deceased 16 July 1995) © Commonwealth of Australia 2000. All material CC-BY unless otherwise stated. At night, Eunice Aphroditois emerges from its burrow to feed. Photo by Roger Steene DEFINITION AND GENERAL DESCRIPTION The Sipuncula is a group of soft-bodied, unsegmented, coelomate, worm-like marine invertebrates (Fig. 5.1; Pls 12.1–12.4). The body consists of a muscular trunk and an anteriorly placed, more slender introvert (Fig. 5.2), which bears the mouth at the anterior extremity of an introvert and a long, recurved, spirally wound alimentary canal lies within the spacious body cavity or coelom. The anus lies dorsally, usually on the anterior surface of the trunk near the base of the introvert. Tentacles either surround, or are associated with the mouth. Chaetae or bristles are absent. Two nephridia are present, occasionally only one. The nervous system, although unsegmented, is annelidan-like, consisting of a long ventral nerve cord and an anteriorly placed brain. The sexes are separate, fertilisation is external and cleavage of the zygote is spiral. The larva is a free-swimming trochophore. They are known commonly as peanut worms. AB D 40 mm 10 mm 5 mm C E 5 mm 5 mm Figure 5.1 External appearance of Australian sipunculans. A, SIPUNCULUS ROBUSTUS (Sipunculidae); B, GOLFINGIA VULGARIS HERDMANI (Golfingiidae); C, THEMISTE VARIOSPINOSA (Themistidae); D, PHASCOLOSOMA ANNULATUM (Phascolosomatidae); E, ASPIDOSIPHON LAEVIS (Aspidosiphonidae). (A, B, D, from Edmonds 1982; C, E, from Edmonds 1980) 2 Sipunculans live in burrows, tubes and protected places. -
Worm Comparison Chart Colwyn Sleep
Worm Comparison Chart Colwyn Sleep Platyhelminthes Nematoda Annelids Flatworms Roundworms Segmented worms Classifications Class Turbellaria: aka “Aschelminthes” Class Polychaeta Predators, scavengers, ¨many bristles¨. -heterotrophic -free-living flatworm Class Oligochaeta -incomplete gut, no includes earthworms. suckers or hooks. Class Hirudinea Class Trematoda: includes leeches. “parasitic worms” -incomplete gut, suckers, outer cuticle. Class Cestodae: “Parasitic worms” -no gut, suckers and hooks on a scolex -body consists of repeating sections called “proglottids.” Body symmetry and -bilaterally symmetrical. -pseudocoelom -bilaterally symmetrical. characteristics -3 layers of tissues with -body cavity partially -three germ layers organs and organelles. lined with mesoderm. -tube-within-a-tube body -no internal cavity. -tube within a tube body plan, and organs. -nervous system of plan -true coelom and longitudinal fibres rather -complete digestive segmentation. than a net. system -body cavity entirely -Reproduction mostly -unsegmented. lined with mesoderm. sexual as -bilateral symmetry. -the coelom is divided hermaphrodites. -cylindrical shape. into separate -mostly feed on animals -three germ layers. compartments by and other smaller life partitions. These septa forms. enable different -Some species occur in compartments to all major habitats, contract or expand including many as independently. parasites of other animals. -cephalization -body cavity filled with mesoderm. Worm Comparison Chart Colwyn Sleep environment (ie. Class Turbellaria: -live in nearly every Class Polychaeta aquatic, terrestrial) Live in the ocean. Some habitat including soil, -some live in tubes that live in fresh water. salt flats, aquatic may be made of sediments, polar calcium, silica (sand) or Trematoda + Cestoda regions, and the tropics protein Parasitic worms that live -don’t like dry places in the liver, lung, heart, Class Oligochaeta or intestine -live in soil and freshwater, some types are found in the ocean Class Hirudinea Aquatic, mostly freshwater, some marine varieties. -
The Comparative Embryology of Sponges Alexander V
The Comparative Embryology of Sponges Alexander V. Ereskovsky The Comparative Embryology of Sponges Alexander V. Ereskovsky Department of Embryology Biological Faculty Saint-Petersburg State University Saint-Petersburg Russia [email protected] Originally published in Russian by Saint-Petersburg University Press ISBN 978-90-481-8574-0 e-ISBN 978-90-481-8575-7 DOI 10.1007/978-90-481-8575-7 Springer Dordrecht Heidelberg London New York Library of Congress Control Number: 2010922450 © Springer Science+Business Media B.V. 2010 No part of this work may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, microfilming, recording or otherwise, without written permission from the Publisher, with the exception of any material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Preface It is generally assumed that sponges (phylum Porifera) are the most basal metazoans (Kobayashi et al. 1993; Li et al. 1998; Mehl et al. 1998; Kim et al. 1999; Philippe et al. 2009). In this connection sponges are of a great interest for EvoDevo biolo- gists. None of the problems of early evolution of multicellular animals and recon- struction of a natural system of their main phylogenetic clades can be discussed without considering the sponges. These animals possess the extremely low level of tissues organization, and demonstrate extremely low level of processes of gameto- genesis, embryogenesis, and metamorphosis. They show also various ways of advancement of these basic mechanisms that allow us to understand processes of establishment of the latter in the early Metazoan evolution. -
Phascolosoma Agassizi Class: Phascolosomatida Order: Phascolosomaformes Pacific Peanut Worm Family: Phasoclosomatidae
Phylum: Annelida Phascolosoma agassizi Class: Phascolosomatida Order: Phascolosomaformes Pacific peanut worm Family: Phasoclosomatidae Taxonomy: The evolutionary origins of can be surrounded by ciliated tentacles, a sipunculans, recently considered a distinct mouth and nuchal organ (Fig. 2) (Rice 2007). phylum (Rice 2007), is controversial. Current Along the introvert epidermis are spines or molecular phylogenetic evidence (e.g., Staton hooks. 2003; Struck et al. 2007; Dordel et al. 2010; Oral disc: The oral disc is bordered Kristof et al. 2011) suggests that Sipuncula be by a ridge (cephalic collar) of tentacles placed within the phylum Annelida, which is enclosing a dorsal nuchal gland. characterized by segmentation. Placement of Inconspicuous, finger-like and not branched the unsegmented Sipuncula and Echiura (Rice 1975b), the 18–24 tentacles exist in a within Annelida, suggests that segmentation crescent-shaped arc, enclosing a heart- was secondarily lost in these groups (Struck shaped nuchal gland (Fig. 2). et al. 2007; Dordel et al. 2010). Mouth: Inconspicuous and posterior to oral disc, with thin flange (cervical collar) Description just ventral to and outside the arc of tentacles Size: Up to 15 cm (extended) and commonly (Fig. 2). 5–7 cm in length (Rice 1975b). The Eyes: A pair of ocelli at anterior end illustrations are from a specimen (Coos Bay) are internal and in an ocular tube (Fig. 4) 13 cm in length. Young individuals are 10–13 (Hermans and Eakin 1969). mm in length (extended, Fisher 1950). Hooks: Tiny chitinous spines on the Juveniles can be up to 30 mm long (Gibbs introvert anterior are arranged in a variable 1985). -
Predatory Drill Holes in Paleocene Ostracods from Argentina and Methods to Infer Predation Intensit
[Palaeontology, 2019, pp. 1–26] A SMALL YET OCCASIONAL MEAL: PREDATORY DRILL HOLES IN PALEOCENE OSTRACODS FROM ARGENTINA AND METHODS TO INFER PREDATION INTENSITY by JORGE VILLEGAS-MARTIN1 ,DAIANECEOLIN2 , GERSON FAUTH1,2 and ADIEL€ A. KLOMPMAKER3 1Graduate Program in Geology, Universidade do Vale do Rio dos Sinos-UNISINOS, Av. Unisinos 950, 93022-000, S~ao Leopoldo, Rio Grande do Sul Brazil; [email protected], [email protected] 2Instituto Tecnologico de Micropaleontologia – itt Fossil, Universidade do Vale do Rio dos Sinos-UNISINOS, Av. Unisinos, 950, 93022-000, S~ao Leopoldo, Rio Grande do Sul Brazil; [email protected] 3Department of Integrative Biology & Museum of Paleontology, University of California, Berkeley, 1005 Valley Life Sciences Building #3140, Berkeley, CA 94720, USA; [email protected] Typescript received 6 May 2018; accepted in revised form 14 December 2018 Abstract: Ostracods are common yet understudied prey in ostracods. The cylindrical (Oichnus simplex) and parabolic item in the fossil record. We document drill holes in Pale- (O. paraboloides) drill holes from Argentina may have been ocene (Danian) ostracods from central Argentina using 9025 caused primarily by naticid and possibly muricid gastropods. specimens representing 66 species. While the percentage of Two oval drill holes (O. ovalis) are morphologically similar drilled specimens at assemblage-level is only 2.3%, consider- to octopod drill holes, but their small size, the fact that able variation exists within species (0.3–25%), suggesting extant octopods are not known to drill ostracods and the prey preference by the drillers. This preference is not deter- absence of such holes in co-occurring gastropods, preclude mined by abundance because no significant correlation is ascription to a predator clade. -
Phylum Porifera
790 Chapter 28 | Invertebrates updated as new information is collected about the organisms of each phylum. 28.1 | Phylum Porifera By the end of this section, you will be able to do the following: • Describe the organizational features of the simplest multicellular organisms • Explain the various body forms and bodily functions of sponges As we have seen, the vast majority of invertebrate animals do not possess a defined bony vertebral endoskeleton, or a bony cranium. However, one of the most ancestral groups of deuterostome invertebrates, the Echinodermata, do produce tiny skeletal “bones” called ossicles that make up a true endoskeleton, or internal skeleton, covered by an epidermis. We will start our investigation with the simplest of all the invertebrates—animals sometimes classified within the clade Parazoa (“beside the animals”). This clade currently includes only the phylum Placozoa (containing a single species, Trichoplax adhaerens), and the phylum Porifera, containing the more familiar sponges (Figure 28.2). The split between the Parazoa and the Eumetazoa (all animal clades above Parazoa) likely took place over a billion years ago. We should reiterate here that the Porifera do not possess “true” tissues that are embryologically homologous to those of all other derived animal groups such as the insects and mammals. This is because they do not create a true gastrula during embryogenesis, and as a result do not produce a true endoderm or ectoderm. But even though they are not considered to have true tissues, they do have specialized cells that perform specific functions like tissues (for example, the external “pinacoderm” of a sponge acts like our epidermis). -
The Molecular and Developmental Biologisk Basis of Bodyplan Patterning in Institut Sipuncula and the Evolution Of
1 THE MOLECULAR AND DEVELOPMENTAL BIOLOGISK BASIS OF BODYPLAN PATTERNING IN INSTITUT SIPUNCULA AND THE EVOLUTION OF SEGMENTATION Alen Kristof | Københavns Universitet 2 DEPARTMENT OF BIOLOGY FACULTY OF SCIENCE UNIVERSITY OF COPENHAGEN PhD thesis Alen Kristof The molecular and developmental basis of bodyplan patterning in Sipuncula and the evolution of segmentation Principal supervisor Associate Prof. Dr. Andreas Wanninger Co-supervisor Prof. Dr. Pedro Martinez, University of Barcelona April, 2011 3 Reviewed by: Assistant Professor Anja Schulze Department of Marine Biology, Texas A&M University at Galveston Galveston, USA Professor Stefan Richter Department of Biological Sciences, University of Rostock Rostock, Germany Faculty opponent: Associate Professor Danny Eibye-Jacobsen Natural History Museum of Denmark, University of Denmark Copenhagen, Denmark ______________________________________________________________ Cover illustration: Front: Frontal view of an adult specimen of the sipunculan Themiste pyroides with a total length of 13 cm. Back: Confocal laserscanning micrograph of a Phascolosoma agassizii pelagosphera larva showing its musculature. Lateral view. Age of the specimen is 15 days and its total size approximately 300 µm in length. 4 “In a world that keeps on pushin’ me around, but I’ll stand my ground, and I won’t back down.” Thomas Earl Petty, 1989 5 Preface Preface The content of this dissertation comprises three years of research at the University of Copenhagen from May 1, 2008 to April 30, 2011. The PhD project on the development of Sipuncula was mainly carried out in the Research Group for Comparative Zoology, Department of Biology, University of Copenhagen under the supervision of Assoc. Prof. Dr. Andreas Wanninger. I spent nine months working on body patterning genes in the lab of Prof.