Porifera, Cnidaria, Ctenophora, Platyhelminthes, Rotifera, Annelida
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Associated Organisms Inhabiting the Calcareous Sponge Clathrina Lutea in La Parguera Natural
bioRxiv preprint doi: https://doi.org/10.1101/596429; this version posted April 3, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Associated organisms inhabiting the calcareous sponge Clathrina lutea in La Parguera Natural 2 Reserve, Puerto Rico 3 4 Jaaziel E. García-Hernández1,2*, Nicholas M. Hammerman2,3*, Juan J. Cruz-Motta2 & Nikolaos V. 5 Schizas2 6 * These authors contributed equally 7 1University of Puerto Rico at Mayagüez, Department of Biology, PO Box 9000, Mayagüez, PR 8 00681 9 2University of Puerto Rico at Mayagüez, Department of Marine Sciences, Marine Genomic 10 Biodiversity Laboratory, PO Box 9000, Mayagüez, PR 00681 11 3School of Biological Sciences, University of Queensland, Gehrmann Laboratories, Level 8, 12 Research Road, St Lucia, QLD 4072, Australia 13 14 15 Nikolaos V. Schizas, [email protected], FAX: 787-899-5500 16 17 Running Head: Infauna of the calcareous sponge Clathrina lutea 18 19 20 1 bioRxiv preprint doi: https://doi.org/10.1101/596429; this version posted April 3, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 21 ABSTRACT 22 Sponges provide an array of ecological services and benefits for Caribbean coral reefs. They 23 function as habitats for a bewildering variety of species, however limited attention has been paid 24 in the systematics and distribution of sponge-associated fauna in the class Calcarea or for that 25 matter of sponges in the Caribbean. -
Nitrogen-Fixing, Photosynthetic, Anaerobic Bacteria Associated with Pelagic Copepods
- AQUATIC MICROBIAL ECOLOGY Vol. 12: 105-113. 1997 Published April 10 , Aquat Microb Ecol Nitrogen-fixing, photosynthetic, anaerobic bacteria associated with pelagic copepods Lita M. Proctor Department of Oceanography, Florida State University, Tallahassee, Florida 32306-3048, USA ABSTRACT: Purple sulfur bacteria are photosynthetic, anaerobic microorganisms that fix carbon di- oxide using hydrogen sulfide as an electron donor; many are also nitrogen fixers. Because of the~r requirements for sulfide or orgamc carbon as electron donors in anoxygenic photosynthesis, these bac- teria are generally thought to be lim~tedto shallow, organic-nch, anoxic environments such as subtidal marine sediments. We report here the discovery of nitrogen-fixing, purple sulfur bactena associated with pelagic copepods from the Caribbean Sea. Anaerobic incubations of bacteria associated with fuU- gut and voided-gut copepods resulted in enrichments of purple/red-pigmented purple sulfur bacteria while anaerobic incubations of bacteria associated with fecal pellets did not yield any purple sulfur bacteria, suggesting that the photosynthetic anaerobes were specifically associated with copepods. Pigment analysis of the Caribbean Sea copepod-associated bacterial enrichments demonstrated that these bactena possess bacter~ochlorophylla and carotenoids in the okenone series, confirming that these bacteria are purple sulfur bacteria. Increases in acetylene reduction paralleled the growth of pur- ple sulfur bactena in the copepod ennchments, suggesting that the purple sulfur bacteria are active nitrogen fixers. The association of these bacteria with planktonic copepods suggests a previously unrecognized role for photosynthetic anaerobes in the marine S, N and C cycles, even in the aerobic water column of the open ocean. KEY WORDS: Manne purple sulfur bacterla . -
Number of Living Species in Australia and the World
Numbers of Living Species in Australia and the World 2nd edition Arthur D. Chapman Australian Biodiversity Information Services australia’s nature Toowoomba, Australia there is more still to be discovered… Report for the Australian Biological Resources Study Canberra, Australia September 2009 CONTENTS Foreword 1 Insecta (insects) 23 Plants 43 Viruses 59 Arachnida Magnoliophyta (flowering plants) 43 Protoctista (mainly Introduction 2 (spiders, scorpions, etc) 26 Gymnosperms (Coniferophyta, Protozoa—others included Executive Summary 6 Pycnogonida (sea spiders) 28 Cycadophyta, Gnetophyta under fungi, algae, Myriapoda and Ginkgophyta) 45 Chromista, etc) 60 Detailed discussion by Group 12 (millipedes, centipedes) 29 Ferns and Allies 46 Chordates 13 Acknowledgements 63 Crustacea (crabs, lobsters, etc) 31 Bryophyta Mammalia (mammals) 13 Onychophora (velvet worms) 32 (mosses, liverworts, hornworts) 47 References 66 Aves (birds) 14 Hexapoda (proturans, springtails) 33 Plant Algae (including green Reptilia (reptiles) 15 Mollusca (molluscs, shellfish) 34 algae, red algae, glaucophytes) 49 Amphibia (frogs, etc) 16 Annelida (segmented worms) 35 Fungi 51 Pisces (fishes including Nematoda Fungi (excluding taxa Chondrichthyes and (nematodes, roundworms) 36 treated under Chromista Osteichthyes) 17 and Protoctista) 51 Acanthocephala Agnatha (hagfish, (thorny-headed worms) 37 Lichen-forming fungi 53 lampreys, slime eels) 18 Platyhelminthes (flat worms) 38 Others 54 Cephalochordata (lancelets) 19 Cnidaria (jellyfish, Prokaryota (Bacteria Tunicata or Urochordata sea anenomes, corals) 39 [Monera] of previous report) 54 (sea squirts, doliolids, salps) 20 Porifera (sponges) 40 Cyanophyta (Cyanobacteria) 55 Invertebrates 21 Other Invertebrates 41 Chromista (including some Hemichordata (hemichordates) 21 species previously included Echinodermata (starfish, under either algae or fungi) 56 sea cucumbers, etc) 22 FOREWORD In Australia and around the world, biodiversity is under huge Harnessing core science and knowledge bases, like and growing pressure. -
The Anti-Viral Applications of Marine Resources for COVID-19 Treatment: an Overview
marine drugs Review The Anti-Viral Applications of Marine Resources for COVID-19 Treatment: An Overview Sarah Geahchan 1,2, Hermann Ehrlich 1,3,4,5 and M. Azizur Rahman 1,3,* 1 Centre for Climate Change Research, Toronto, ON M4P 1J4, Canada; [email protected] (S.G.); [email protected] (H.E.) 2 Department of Pharmacology and Toxicology, University of Toronto, Toronto, ON M5S 2E8, Canada 3 A.R. Environmental Solutions, University of Toronto, ICUBE-UTM, Mississauga, ON L5L 1C6, Canada 4 Institute of Electronic and Sensor Materials, TU Bergakademie Freiberg, 09599 Freiberg, Germany 5 Center for Advanced Technology, Adam Mickiewicz University, 61614 Poznan, Poland * Correspondence: [email protected] Abstract: The ongoing pandemic has led to an urgent need for novel drug discovery and potential therapeutics for Sars-CoV-2 infected patients. Although Remdesivir and the anti-inflammatory agent dexamethasone are currently on the market for treatment, Remdesivir lacks full efficacy and thus, more drugs are needed. This review was conducted through literature search of PubMed, MDPI, Google Scholar and Scopus. Upon review of existing literature, it is evident that marine organisms harbor numerous active metabolites with anti-viral properties that serve as potential leads for COVID- 19 therapy. Inorganic polyphosphates (polyP) naturally found in marine bacteria and sponges have been shown to prevent viral entry, induce the innate immune response, and downregulate human ACE-2. Furthermore, several marine metabolites isolated from diverse sponges and algae have been shown to inhibit main protease (Mpro), a crucial protein required for the viral life cycle. Sulfated polysaccharides have also been shown to have potent anti-viral effects due to their anionic properties and high molecular weight. -
Gnesiotrocha, Monogononta, Rotifera) in Thale Noi Lake, Thailand
Zootaxa 2997: 1–18 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) Diversity of sessile rotifers (Gnesiotrocha, Monogononta, Rotifera) in Thale Noi Lake, Thailand PHURIPONG MEKSUWAN1, PORNSILP PHOLPUNTHIN1 & HENDRIK SEGERS2,3 1Plankton Research Unit, Department of Biology, Faculty of Science, Prince of Songkla University, Hat Yai 90112, Songkhla, Thai- land. E-mail: [email protected], [email protected] 2Freshwater Laboratory, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, 1000 Brussels, Belgium. E-mail: [email protected] 3Corresponding author Abstract In response to a clear gap in knowledge on the biodiversity of sessile Gnesiotrocha rotifers at both global as well as re- gional Southeast Asian scales, we performed a study of free-living colonial and epiphytic rotifers attached to fifteen aquat- ic plant species in Thale Noi Lake, the first Ramsar site in Thailand. We identified 44 different taxa of sessile rotifers, including thirty-nine fixosessile species and three planktonic colonial species. This corresponds with about 40 % of the global sessile rotifer diversity, and is the highest alpha-diversity of the group ever recorded from a single lake. The record further includes a new genus, Lacinularoides n. gen., containing a single species L. coloniensis (Colledge, 1918) n. comb., which is redescribed, and several possibly new species, one of which, Ptygura thalenoiensis n. spec. is formally described here. Ptygura noodti (Koste, 1972) n. comb. is relocated from Floscularia, based on observations of living specimens of this species, formerly known only from preserved, contracted specimens from the Amazon region. -
Review of the Mineralogy of Calcifying Sponges
Dickinson College Dickinson Scholar Faculty and Staff Publications By Year Faculty and Staff Publications 12-2013 Not All Sponges Will Thrive in a High-CO2 Ocean: Review of the Mineralogy of Calcifying Sponges Abigail M. Smith Jade Berman Marcus M. Key, Jr. Dickinson College David J. Winter Follow this and additional works at: https://scholar.dickinson.edu/faculty_publications Part of the Paleontology Commons Recommended Citation Smith, Abigail M.; Berman, Jade; Key,, Marcus M. Jr.; and Winter, David J., "Not All Sponges Will Thrive in a High-CO2 Ocean: Review of the Mineralogy of Calcifying Sponges" (2013). Dickinson College Faculty Publications. Paper 338. https://scholar.dickinson.edu/faculty_publications/338 This article is brought to you for free and open access by Dickinson Scholar. It has been accepted for inclusion by an authorized administrator. For more information, please contact [email protected]. © 2013. Licensed under the Creative Commons http://creativecommons.org/licenses/by- nc-nd/4.0/ Elsevier Editorial System(tm) for Palaeogeography, Palaeoclimatology, Palaeoecology Manuscript Draft Manuscript Number: PALAEO7348R1 Title: Not all sponges will thrive in a high-CO2 ocean: Review of the mineralogy of calcifying sponges Article Type: Research Paper Keywords: sponges; Porifera; ocean acidification; calcite; aragonite; skeletal biomineralogy Corresponding Author: Dr. Abigail M Smith, PhD Corresponding Author's Institution: University of Otago First Author: Abigail M Smith, PhD Order of Authors: Abigail M Smith, PhD; Jade Berman, PhD; Marcus M Key Jr, PhD; David J Winter, PhD Abstract: Most marine sponges precipitate silicate skeletal elements, and it has been predicted that they would be among the few "winners" in an acidifying, high-CO2 ocean. -
Animal Origins and the Evolution of Body Plans 621
Animal Origins and the Evolution 32 of Body Plans In 1822, nearly forty years before Darwin wrote The Origin of Species, a French naturalist, Étienne Geoffroy Saint-Hilaire, was examining a lob- ster. He noticed that when he turned the lobster upside down and viewed it with its ventral surface up, its central nervous system was located above its digestive tract, which in turn was located above its heart—the same relative positions these systems have in mammals when viewed dorsally. His observations led Geoffroy to conclude that the differences between arthropods (such as lobsters) and vertebrates (such as mammals) could be explained if the embryos of one of those groups were inverted during development. Geoffroy’s suggestion was regarded as preposterous at the time and was largely dismissed until recently. However, the discovery of two genes that influence a sys- tem of extracellular signals involved in development has lent new support to Geof- froy’s seemingly outrageous hypothesis. Genes that Control Development A A vertebrate gene called chordin helps to establish cells on one side of the embryo human and a lobster carry similar genes that control the development of the body as dorsal and on the other as ventral. A probably homologous gene in fruit flies, called axis, but these genes position their body sog, acts in a similar manner, but has the opposite effect. Fly cells where sog is active systems inversely. A lobster’s nervous sys- become ventral, whereas vertebrate cells where chordin is active become dorsal. How- tem runs up its ventral (belly) surface, whereas a vertebrate’s runs down its dorsal ever, when sog mRNA is injected into an embryo (back) surface. -
Comprehensive Phylogenomic Analyses Resolve Cnidarian Relationships and the Origins of Key Organismal Traits
Comprehensive phylogenomic analyses resolve cnidarian relationships and the origins of key organismal traits Ehsan Kayal1,2, Bastian Bentlage1,3, M. Sabrina Pankey5, Aki H. Ohdera4, Monica Medina4, David C. Plachetzki5*, Allen G. Collins1,6, Joseph F. Ryan7,8* Authors Institutions: 1. Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution 2. UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680 Roscoff, France 3. Marine Laboratory, university of Guam, UOG Station, Mangilao, GU 96923, USA 4. Department of Biology, Pennsylvania State University, University Park, PA, USA 5. Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH, USA 6. National Systematics Laboratory, NOAA Fisheries, National Museum of Natural History, Smithsonian Institution 7. Whitney Laboratory for Marine Bioscience, University of Florida, St Augustine, FL, USA 8. Department of Biology, University of Florida, Gainesville, FL, USA PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.3172v1 | CC BY 4.0 Open Access | rec: 21 Aug 2017, publ: 21 Aug 20171 Abstract Background: The phylogeny of Cnidaria has been a source of debate for decades, during which nearly all-possible relationships among the major lineages have been proposed. The ecological success of Cnidaria is predicated on several fascinating organismal innovations including symbiosis, colonial body plans and elaborate life histories, however, understanding the origins and subsequent diversification of these traits remains difficult due to persistent uncertainty surrounding the evolutionary relationships within Cnidaria. While recent phylogenomic studies have advanced our knowledge of the cnidarian tree of life, no analysis to date has included genome scale data for each major cnidarian lineage. Results: Here we describe a well-supported hypothesis for cnidarian phylogeny based on phylogenomic analyses of new and existing genome scale data that includes representatives of all cnidarian classes. -
February 15, 2012 Chapter 34 Notes: Flatworms, Roundworms and Rotifers
February 15, 2012 Chapter 34 Notes: Flatworms, Roundworms and Rotifers Section 1 Platyhelminthes Section 2 Nematoda and Rotifera 34-1 Objectives Summarize the distinguishing characteristics of flatworms. Describe the anatomy of a planarian. Compare free-living and parasitic flatworms. Diagram the life cycle of a fluke. Describe the life cycle of a tapeworm. Structure and Function of Flatworms · The phylum Platyhelminthes includes organisms called flatworms. · They are more complex than sponges but are the simplest animals with bilateral symmetry. · Their bodies develop from three germ layers: · ectoderm · mesoderm · endoderm · They are acoelomates with dorsoventrally flattened bodies. · They exhibit cephalization. · The classification of Platyhelminthes has undergone many recent changes. Characteristics of Flatworms February 15, 2012 Class Turbellaria · The majority of species in the class Turbellaria live in the ocean. · The most familiar turbellarians are the freshwater planarians of the genus Dugesia. · Planarians have a spade-shaped anterior end and a tapered posterior end. Class Turbellaria Continued Digestion and Excretion in Planarians · Planarians feed on decaying plant or animal matter and smaller organisms. · Food is ingested through the pharynx. · Planarians eliminate excess water through a network of excretory tubules. · Each tubule is connected to several flame cells. · The water is transported through the tubules and excreted from pores on the body surface. Class Turbellaria Continued Neural Control in Planarians · The planarian nervous system is more complex than the nerve net of cnidarians. · The cerebral ganglia serve as a simple brain. · A planarian’s nervous system gives it the ability to learn. · Planarians sense light with eyespots. · Other sensory cells respond to touch, water currents, and chemicals in the environment. -
Comparative Neuroanatomy of Mollusks and Nemerteans in the Context of Deep Metazoan Phylogeny
Comparative Neuroanatomy of Mollusks and Nemerteans in the Context of Deep Metazoan Phylogeny Von der Fakultät für Mathematik, Informatik und Naturwissenschaften der RWTH Aachen University zur Erlangung des akademischen Grades einer Doktorin der Naturwissenschaften genehmigte Dissertation vorgelegt von Diplom-Biologin Simone Faller aus Frankfurt am Main Berichter: Privatdozent Dr. Rudolf Loesel Universitätsprofessor Dr. Peter Bräunig Tag der mündlichen Prüfung: 09. März 2012 Diese Dissertation ist auf den Internetseiten der Hochschulbibliothek online verfügbar. Contents 1 General Introduction 1 Deep Metazoan Phylogeny 1 Neurophylogeny 2 Mollusca 5 Nemertea 6 Aim of the thesis 7 2 Neuroanatomy of Minor Mollusca 9 Introduction 9 Material and Methods 10 Results 12 Caudofoveata 12 Scutopus ventrolineatus 12 Falcidens crossotus 16 Solenogastres 16 Dorymenia sarsii 16 Polyplacophora 20 Lepidochitona cinerea 20 Acanthochitona crinita 20 Scaphopoda 22 Antalis entalis 22 Entalina quinquangularis 24 Discussion 25 Structure of the brain and nerve cords 25 Caudofoveata 25 Solenogastres 26 Polyplacophora 27 Scaphopoda 27 i CONTENTS Evolutionary considerations 28 Relationship among non-conchiferan molluscan taxa 28 Position of the Scaphopoda within Conchifera 29 Position of Mollusca within Protostomia 30 3 Neuroanatomy of Nemertea 33 Introduction 33 Material and Methods 34 Results 35 Brain 35 Cerebral organ 38 Nerve cords and peripheral nervous system 38 Discussion 38 Peripheral nervous system 40 Central nervous system 40 In search for the urbilaterian brain 42 4 General Discussion 45 Evolution of higher brain centers 46 Neuroanatomical glossary and data matrix – Essential steps toward a cladistic analysis of neuroanatomical data 49 5 Summary 53 6 Zusammenfassung 57 7 References 61 Danksagung 75 Lebenslauf 79 ii iii 1 General Introduction Deep Metazoan Phylogeny The concept of phylogeny follows directly from the theory of evolution as published by Charles Darwin in The origin of species (1859). -
A Phylum-Wide Survey Reveals Multiple Independent Gains of Head Regeneration Ability in Nemertea
bioRxiv preprint doi: https://doi.org/10.1101/439497; this version posted October 11, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. A phylum-wide survey reveals multiple independent gains of head regeneration ability in Nemertea Eduardo E. Zattara1,2,5, Fernando A. Fernández-Álvarez3, Terra C. Hiebert4, Alexandra E. Bely2 and Jon L. Norenburg1 1 Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA 2 Department of Biology, University of Maryland, College Park, MD, USA 3 Institut de Ciències del Mar, Consejo Superior de Investigaciones Científicas, Barcelona, Spain 4 Institute of Ecology and Evolution, University of Oregon, Eugene, OR, USA 5 INIBIOMA, Consejo Nacional de Investigaciones Científicas y Tecnológicas, Bariloche, RN, Argentina Corresponding author: E.E. Zattara, [email protected] Abstract Animals vary widely in their ability to regenerate, suggesting that regenerative abilities have a rich evolutionary history. However, our understanding of this history remains limited because regeneration ability has only been evaluated in a tiny fraction of species. Available comparative regeneration studies have identified losses of regenerative ability, yet clear documentation of gains is lacking. We surveyed regenerative ability in 34 species spanning the phylum Nemertea, assessing the ability to regenerate heads and tails either through our own experiments or from literature reports. Our sampling included representatives of the 10 most diverse families and all three orders comprising this phylum. -
A New Species of the Calcareous Sponge Genus Leuclathrina (Calcarea: Calcinea: Clathrinida) from the Maldives
Zootaxa 4382 (1): 147–158 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2018 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4382.1.5 http://zoobank.org/urn:lsid:zoobank.org:pub:B222C2D8-82FB-414C-A88F-44A12A837A21 A new species of the calcareous sponge genus Leuclathrina (Calcarea: Calcinea: Clathrinida) from the Maldives OLIVER VOIGT1,5, BERNHARD RUTHENSTEINER2, LAURA LEIVA1, BENEDETTA FRADUSCO1 & GERT WÖRHEIDE1,3,4 1Department of Earth and Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universität München, Rich- ard-Wagner-Str. 10, 80333 München, Germany 2 SNSB - Zoologische Staatssammlung München, Sektion Evertebrata varia, Münchhausenstr. 21, 81247 München, Germany 3 GeoBio-Center, Ludwig-Maximilians-Universität München, Richard-Wagner-Str. 10, 80333 München, Germany 4SNSB - Bayerische Staatssammlung für Paläontologie und Geologie, Richard-Wagner-Str. 10, 80333 München, Germany 5Corresponding author. E-mail: [email protected], Tel.: +49 (0) 89 2180 6635; Fax: +49 (0) 89 2180 6601 Abstract The diversity and phylogenetic relationships of calcareous sponges are still not completely understood. Recent integrative approaches combined analyses of DNA and morphological observations. Such studies resulted in severe taxonomic revi- sions within the subclass Calcinea and provided the foundation for a phylogenetically meaningful classification. However, several genera are missing from DNA phylogenies and their relationship to other Calcinea remain uncertain. One of these genera is Leuclathrina (family Leucaltidae). We here describe a new species from the Maldives, Leuclathrina translucida sp. nov., which is only the second species of the genus. Like the type species Leuclathrina asconoides, the new species has a leuconoid aquiferous system and lacks a specialized choanoskeleton.