The Comparative Embryology of Sponges Alexander V
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Spicule Formation in Calcareous Sponges: Coordinated Expression
www.nature.com/scientificreports OPEN Spicule formation in calcareous sponges: Coordinated expression of biomineralization genes and Received: 17 November 2016 Accepted: 02 March 2017 spicule-type specific genes Published: 13 April 2017 Oliver Voigt1, Maja Adamska2, Marcin Adamski2, André Kittelmann1, Lukardis Wencker1 & Gert Wörheide1,3,4 The ability to form mineral structures under biological control is widespread among animals. In several species, specific proteins have been shown to be involved in biomineralization, but it is uncertain how they influence the shape of the growing biomineral and the resulting skeleton. Calcareous sponges are the only sponges that form calcitic spicules, which, based on the number of rays (actines) are distinguished in diactines, triactines and tetractines. Each actine is formed by only two cells, called sclerocytes. Little is known about biomineralization proteins in calcareous sponges, other than that specific carbonic anhydrases (CAs) have been identified, and that uncharacterized Asx-rich proteins have been isolated from calcitic spicules. By RNA-Seq and RNA in situ hybridization (ISH), we identified five additional biomineralization genes inSycon ciliatum: two bicarbonate transporters (BCTs) and three Asx-rich extracellular matrix proteins (ARPs). We show that these biomineralization genes are expressed in a coordinated pattern during spicule formation. Furthermore, two of the ARPs are spicule- type specific for triactines and tetractines (ARP1 orSciTriactinin ) or diactines (ARP2 or SciDiactinin). Our results suggest that spicule formation is controlled by defined temporal and spatial expression of spicule-type specific sets of biomineralization genes. By the process of biomineralization many animal groups produce mineral structures like skeletons, shells and teeth. Biominerals differ in shape considerably from their inorganic mineral counterparts1. -
Bryozoan Studies 2019
BRYOZOAN STUDIES 2019 Edited by Patrick Wyse Jackson & Kamil Zágoršek Czech Geological Survey 1 BRYOZOAN STUDIES 2019 2 Dedication This volume is dedicated with deep gratitude to Paul Taylor. Throughout his career Paul has worked at the Natural History Museum, London which he joined soon after completing post-doctoral studies in Swansea which in turn followed his completion of a PhD in Durham. Paul’s research interests are polymatic within the sphere of bryozoology – he has studied fossil bryozoans from all of the geological periods, and modern bryozoans from all oceanic basins. His interests include taxonomy, biodiversity, skeletal structure, ecology, evolution, history to name a few subject areas; in fact there are probably none in bryozoology that have not been the subject of his many publications. His office in the Natural History Museum quickly became a magnet for visiting bryozoological colleagues whom he always welcomed: he has always been highly encouraging of the research efforts of others, quick to collaborate, and generous with advice and information. A long-standing member of the International Bryozoology Association, Paul presided over the conference held in Boone in 2007. 3 BRYOZOAN STUDIES 2019 Contents Kamil Zágoršek and Patrick N. Wyse Jackson Foreword ...................................................................................................................................................... 6 Caroline J. Buttler and Paul D. Taylor Review of symbioses between bryozoans and primary and secondary occupants of gastropod -
The Architecture of Cell Differentiation in Choanoflagellates And
bioRxiv preprint doi: https://doi.org/10.1101/452185; this version posted October 29, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 The architecture of cell differentiation in choanoflagellates 2 and sponge choanocytes 3 Davis Laundon1,2,6, Ben Larson3, Kent McDonald3, Nicole King3,4 and Pawel 4 Burkhardt1,5* 5 1 Marine Biological Association of the United Kingdom, The Laboratory, Citadel Hill, 6 Plymouth, PL1 2PB, United Kingdom 7 2 Plymouth University, Drake Circus, Plymouth, PL4 8AA, United Kingdom 8 3 Department of Molecular and Cell Biology, University of California, Berkeley, USA 9 4 Howard Hughes Medical Institute 10 5 Sars International Centre for Molecular Marine Biology, University of Bergen, 11 Thormohlensgate 55, 5020 Bergen, Norway 12 6 Current Affiliation: University of East Anglia, Norwich, NR4 7TJ, United Kingdom 13 14 *Correspondence [email protected] 15 16 17 18 19 20 21 22 23 24 25 bioRxiv preprint doi: https://doi.org/10.1101/452185; this version posted October 29, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 26 SUMMARY 27 Collar cells are ancient animal cell types which are conserved across the animal 28 kingdom [1] and their closest relatives, the choanoflagellates [2]. -
New Zealand Oceanographic Institute Memoir 100
ISSN 0083-7903, 100 (Print) ISSN 2538-1016; 100 (Online) , , II COVER PHOTO. Dictyodendrilla cf. cavernosa (Lendenfeld, 1883) (type species of Dictyodendri/la Bergquist, 1980) (see page 24), from NZOI Stn I827, near Rikoriko Cave entrance, Poor Knights Islands Marine Reserve. Photo: Ken Grange, NZOI. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ NATIONAL INSTITUTE OF WATER AND ATMOSPHERIC RESEARCH The Marine Fauna of New Zealand: Index to the Fauna 2. Porifera by ELLIOT W. DAWSON N .Z. Oceanographic Institute, Wellington New Zealand Oceanographic Institute Memoir 100 1993 • This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ Cataloguing in publication DAWSON, E.W. The marine fauna of New Zealand: Index to the Fauna 2. Porifera / by Elliot W. Dawson - Wellington: New Zealand Oceanographic Institute, 1993. (New Zealand Oceanographic Institute memoir, ISSN 0083-7903, 100) ISBN 0-478-08310-6 I. Title II. Series UDC Series Editor Dennis P. Gordon Typeset by Rose-Marie C. Thompson NIWA Oceanographic (NZOI) National Institute of Water and Atmospheric Research Received for publication: 17 July 1991 © NIWA Copyright 1993 2 This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ CONTENTS Page ABSTRACT 5 INTRODUCTION 5 SCOPE AND ARRANGEMENT 7 SYSTEMATIC LIST 8 Class DEMOSPONGIAE 8 Subclass Homosclcromorpha .............................................................................................. -
Sponge–Microbe Interactions on Coral Reefs: Multiple Evolutionary Solutions to a Complex Environment
fmars-08-705053 July 14, 2021 Time: 18:29 # 1 REVIEW published: 20 July 2021 doi: 10.3389/fmars.2021.705053 Sponge–Microbe Interactions on Coral Reefs: Multiple Evolutionary Solutions to a Complex Environment Christopher J. Freeman1*, Cole G. Easson2, Cara L. Fiore3 and Robert W. Thacker4,5 1 Department of Biology, College of Charleston, Charleston, SC, United States, 2 Department of Biology, Middle Tennessee State University, Murfreesboro, TN, United States, 3 Department of Biology, Appalachian State University, Boone, NC, United States, 4 Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY, United States, 5 Smithsonian Tropical Research Institute, Panama City, Panama Marine sponges have been successful in their expansion across diverse ecological niches around the globe. Pioneering work attributed this success to both a well- developed aquiferous system that allowed for efficient filter feeding on suspended organic matter and the presence of microbial symbionts that can supplement host Edited by: heterotrophic feeding with photosynthate or dissolved organic carbon. We now know Aldo Cróquer, The Nature Conservancy, that sponge-microbe interactions are host-specific, highly nuanced, and provide diverse Dominican Republic nutritional benefits to the host sponge. Despite these advances in the field, many current Reviewed by: hypotheses pertaining to the evolution of these interactions are overly generalized; these Ryan McMinds, University of South Florida, over-simplifications limit our understanding of the evolutionary processes shaping these United States symbioses and how they contribute to the ecological success of sponges on modern Alejandra Hernandez-Agreda, coral reefs. To highlight the current state of knowledge in this field, we start with seminal California Academy of Sciences, United States papers and review how contemporary work using higher resolution techniques has Torsten Thomas, both complemented and challenged their early hypotheses. -
Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
Coastal and Marine Ecological Classification Standard (2012)
FGDC-STD-018-2012 Coastal and Marine Ecological Classification Standard Marine and Coastal Spatial Data Subcommittee Federal Geographic Data Committee June, 2012 Federal Geographic Data Committee FGDC-STD-018-2012 Coastal and Marine Ecological Classification Standard, June 2012 ______________________________________________________________________________________ CONTENTS PAGE 1. Introduction ..................................................................................................................... 1 1.1 Objectives ................................................................................................................ 1 1.2 Need ......................................................................................................................... 2 1.3 Scope ........................................................................................................................ 2 1.4 Application ............................................................................................................... 3 1.5 Relationship to Previous FGDC Standards .............................................................. 4 1.6 Development Procedures ......................................................................................... 5 1.7 Guiding Principles ................................................................................................... 7 1.7.1 Build a Scientifically Sound Ecological Classification .................................... 7 1.7.2 Meet the Needs of a Wide Range of Users ...................................................... -
A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution
marine drugs Review A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution Adrian Galitz 1 , Yoichi Nakao 2 , Peter J. Schupp 3,4 , Gert Wörheide 1,5,6 and Dirk Erpenbeck 1,5,* 1 Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; [email protected] (A.G.); [email protected] (G.W.) 2 Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan; [email protected] 3 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany; [email protected] 4 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany 5 GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 6 SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany * Correspondence: [email protected] Abstract: Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding Citation: Galitz, A.; Nakao, Y.; of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal Schupp, P.J.; Wörheide, G.; pathways and evolution of compound production in sponges. This benefits the discovery rate and Erpenbeck, D. A Soft Spot for yield of bioprospecting for novel marine natural products by identifying lineages with high potential Chemistry–Current Taxonomic and Evolutionary Implications of Sponge of being new sources of valuable sponge compounds. -
Naturally Prefabricated Marine Biomaterials: Isolation and Applications of Flat Chitinous 3D Scaffolds from Ianthella Labyrinthus (Demospongiae: Verongiida)
International Journal of Molecular Sciences Article Naturally Prefabricated Marine Biomaterials: Isolation and Applications of Flat Chitinous 3D Scaffolds from Ianthella labyrinthus (Demospongiae: Verongiida) Mario Schubert 1, Björn Binnewerg 1, Alona Voronkina 2 , Lyubov Muzychka 3, Marcin Wysokowski 4,5 , Iaroslav Petrenko 5, Valentine Kovalchuk 6, Mikhail Tsurkan 7 , Rajko Martinovic 8 , Nicole Bechmann 9 , Viatcheslav N. Ivanenko 10 , Andriy Fursov 5, Oleg B. Smolii 3, Jane Fromont 11 , Yvonne Joseph 5 , Stefan R. Bornstein 12,13, Marco Giovine 14, Dirk Erpenbeck 15 , Kaomei Guan 1,* and Hermann Ehrlich 5,* 1 Institute of Pharmacology and Toxicology, Technische Universität Dresden, 01307 Dresden, Germany; [email protected] (M.S.); [email protected] (B.B.) 2 Department of Pharmacy, National Pirogov Memorial Medical University, Vinnytsya, 21018 Vinnytsia, Ukraine; [email protected] 3 V.P Kukhar Institute of Bioorganic Chemistry and Petrochemistry, National Academy of Science of Ukraine, Murmanska Str. 1, 02094 Kyiv, Ukraine; [email protected] (L.M.); [email protected] (O.B.S.) 4 Faculty of Chemical Technology, Institute of Chemical Technology and Engineering, Poznan University of Technology, Berdychowo 4, 60-965 Poznan, Poland; [email protected] 5 Institute of Electronics and Sensor Materials, TU Bergakademie Freiberg, Gustav-Zeuner str. 3, 09599 Freiberg, Germany; [email protected] (I.P.); [email protected] (A.F.); [email protected] (Y.J.) 6 Department of Microbiology, -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Preliminary Checklist of Extant Endemic Species and Subspecies of the Windward Dutch Caribbean (St
Preliminary checklist of extant endemic species and subspecies of the windward Dutch Caribbean (St. Martin, St. Eustatius, Saba and the Saba Bank) Authors: O.G. Bos, P.A.J. Bakker, R.J.H.G. Henkens, J. A. de Freitas, A.O. Debrot Wageningen University & Research rapport C067/18 Preliminary checklist of extant endemic species and subspecies of the windward Dutch Caribbean (St. Martin, St. Eustatius, Saba and the Saba Bank) Authors: O.G. Bos1, P.A.J. Bakker2, R.J.H.G. Henkens3, J. A. de Freitas4, A.O. Debrot1 1. Wageningen Marine Research 2. Naturalis Biodiversity Center 3. Wageningen Environmental Research 4. Carmabi Publication date: 18 October 2018 This research project was carried out by Wageningen Marine Research at the request of and with funding from the Ministry of Agriculture, Nature and Food Quality for the purposes of Policy Support Research Theme ‘Caribbean Netherlands' (project no. BO-43-021.04-012). Wageningen Marine Research Den Helder, October 2018 CONFIDENTIAL no Wageningen Marine Research report C067/18 Bos OG, Bakker PAJ, Henkens RJHG, De Freitas JA, Debrot AO (2018). Preliminary checklist of extant endemic species of St. Martin, St. Eustatius, Saba and Saba Bank. Wageningen, Wageningen Marine Research (University & Research centre), Wageningen Marine Research report C067/18 Keywords: endemic species, Caribbean, Saba, Saint Eustatius, Saint Marten, Saba Bank Cover photo: endemic Anolis schwartzi in de Quill crater, St Eustatius (photo: A.O. Debrot) Date: 18 th of October 2018 Client: Ministry of LNV Attn.: H. Haanstra PO Box 20401 2500 EK The Hague The Netherlands BAS code BO-43-021.04-012 (KD-2018-055) This report can be downloaded for free from https://doi.org/10.18174/460388 Wageningen Marine Research provides no printed copies of reports Wageningen Marine Research is ISO 9001:2008 certified. -
2020 Annual Report
EMBRC: 2020 annual report Marine biodiversity is becoming an increasing concern with climate change and marine pollution, and, as a result, is of high relevance in the forthcoming UN Decade of the Ocean and Europe’s Green Deal. One of EMBRC’s principal activities is the provision of access to marine biodiversity, in all its forms. EMBRC Operators include some of the oldest marine institutes in the world and operate long-term observations, host biodiversity monitoring activities, and conduct research. In order to provide holistic information on biodiversity composition at these sites, EMBRC will establish EMO BON, a coordinated European Marine Omics Biodiversity Observation Network across its partners. This will constitute a new approach for EMBRC, and a step in a new direction, toward data generation and long-term observation. EMO BON presents an important need for the EMBRC user community and the opportunity to start filling the void in biological observation that we currently face in regard to physical and chemical observation. This is also an exciting opportunity to generate data for the marine microbiome studies currently in progress, and support Atlantic strategies, such as the Atlantic Ocean Research Alliance (AORA). Knowledge-based management of our blue planet is only possible by unified global monitoring using comparable data, which, in the case of biodiversity, cannot currently be assessed by remote sensing. In this context, EMBRC wishes to contribute to the global coordination of marine biodiversity by –omics approaches, integrating forthcoming technologies as appropriate. We aim to reach and interact with other relevant initiatives, offering the advantages of a sustainable RI that can support active research and underpin the development and optimisation of new methods.