Extreme Resistance of Bdelloid Rotifers to Ionizing Radiation
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Characterization of Stress Tolerance and Metabolic Capabilities of Acidophilic Iron-Sulfur-Transforming Bacteria and Their Relevance to Mars
Characterization of stress tolerance and metabolic capabilities of acidophilic iron-sulfur-transforming bacteria and their relevance to Mars Dissertation zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften – Dr. rer. nat. – vorgelegt von Anja Bauermeister aus Leipzig Im Fachbereich Chemie der Universität Duisburg-Essen 2012 Die vorliegende Arbeit wurde im Zeitraum von März 2009 bis Dezember 2012 im Arbeitskreis von Prof. Dr. Hans-Curt Flemming am Biofilm Centre (Fakultät für Chemie) der Universität Duisburg-Essen und in der Abteilung Strahlenbiologie (Institut für Luft- und Raumfahrtmedizin, Deutsches Zentrum für Luft- und Raumfahrt, Köln) durchgeführt. Tag der Einreichung: 07.12.2012 Tag der Disputation: 23.04.2013 Gutachter: Prof. Dr. H.-C. Flemming Prof. Dr. W. Sand Vorsitzender: Prof. Dr. C. Mayer Erklärung / Statement Hiermit versichere ich, dass ich die vorliegende Arbeit mit dem Titel „Characterization of stress tolerance and metabolic capabilities of acidophilic iron- sulfur-transforming bacteria and their relevance to Mars” selbst verfasst und keine außer den angegebenen Hilfsmitteln und Quellen benutzt habe, und dass die Arbeit in dieser oder ähnlicher Form noch bei keiner anderen Universität eingereicht wurde. Herewith I declare that this thesis is the result of my independent work. All sources and auxiliary materials used by me in this thesis are cited completely. Essen, 07.12.2012 Table of contents Abbreviations ....................................................................................... -
Experimental and Statistical Analysis of Nutritional Requirements for the Growth of the Extremophile Deinococcus Geothermalis DSM 11300
Experimental and statistical analysis of nutritional requirements for the growth of the extremophile Deinococcus geothermalis DSM 11300 Julie Bornot, Cesar Arturo Aceves-Lara, Carole Molina-Jouve, Jean-Louis Uribelarrea, Nathalie Gorret To cite this version: Julie Bornot, Cesar Arturo Aceves-Lara, Carole Molina-Jouve, Jean-Louis Uribelarrea, Nathalie Gor- ret. Experimental and statistical analysis of nutritional requirements for the growth of the ex- tremophile Deinococcus geothermalis DSM 11300. Extremophiles, Springer Verlag, 2014, 18 (6), pp.1009-1021. 10.1007/s00792-014-0671-8. hal-01268947 HAL Id: hal-01268947 https://hal.archives-ouvertes.fr/hal-01268947 Submitted on 11 Mar 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. OATAO is an open access repository that collects the work of Toulouse researchers and makes it freely available over the web where possible This is an author’s version published in: http://oatao.univ-toulouse.fr/22999 Official URL: https://doi.org/10.1007/s00792-014-0671-8 To cite this version: Bornot, Julie and Aceves-Lara, César-Arturo and Molina-Jouve, Carole and Uribelarrea, Jean-Louis and Gorret, Nathalie Experimental and statistical analysis of nutritional requirements for the growth of the extremophile Deinococcus geothermalis DSM 11300. -
Thermodynamics of DNA Binding by DNA Polymerase I and Reca
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2014 Thermodynamics of DNA Binding by DNA Polymerase I and RecA Recombinase from Deinococcus radiodurans Jaycob Dalton Warfel Louisiana State University and Agricultural and Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Recommended Citation Warfel, Jaycob Dalton, "Thermodynamics of DNA Binding by DNA Polymerase I and RecA Recombinase from Deinococcus radiodurans" (2014). LSU Doctoral Dissertations. 2382. https://digitalcommons.lsu.edu/gradschool_dissertations/2382 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. THERMODYNAMICS OF DNA BINDING BY DNA POLYMERASE I AND RECA RECOMBINASE FROM DEINOCOCCUS RADIODURANS A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Biological Sciences by Jaycob Dalton Warfel B.S. Louisiana State University, 2006 May 2015 ACKNOWLEDGEMENTS I would like to express my utmost gratitude to the myriad of individuals who have lent their support during the time it has taken to complete this dissertation. First and foremost is due glory to God, The Father, The Son and The Holy Spirit, through whom all is accomplished. It is with extreme thankfulness for the blessings bestowed upon me, and with vast appreciation for the beauty of God’s creation that I have pursued a scientific education. -
An Introduction to Phylum Tardigrada - Review
Volume V, Issue V, May 2016 IJLTEMAS ISSN 2278 – 2540 An Introduction to phylum Tardigrada - Review Yashas R Devasurmutt1, Arpitha B M1* 1: R & D Centre, Department of Biotechnology, Dayananda Sagar College of Engineering, Bangalore, India 1*: Corresponding Author: Arpitha B M Abstract: Tardigrades popularly known as water bears are In cryptobiosis (extreme form of anabiosis), the metabolism is micrometazoans with four pairs of lobopod legs. They are the undetectable and the animal is known as tun in this phase. organisms which can live in extreme conditions and are known to Tuns have been known to survive very harsh environmental survive in vacuum and space without protection. Tardigardes conditions such as immersion in helium at -272° C (-458° F) survive in lichens and mosses, usually associated with water film or heating temperatures at 149° C (300° F), exposure to very on mosses, liverworts, and lichens. More species are found in high ionizing radiation and toxic chemical substances and milder environments such as meadows, ponds and lakes. They long durations without oxygen. [4] Figure 2 illustrates the are the first known species to survive in outer space. Tardigrades process of transition of the tardigrades[41]. are closely related to Arthropoda and nematodes based on their morphological and molecular analysis. The cryptobiosis of Figure 2: Transition process of Tardigrades Tardigrades have helped scientists to develop dry vaccines. They have been applied as research subjects in transplantology. Future research would help in more applications of tardigrades in the field of science. Keywords: Tardigrades, cryptobiosis, dry vaccines, Transplantology, space research I. INTRODUCTION ardigrade, a group of tiny arthropod-like animals having T four pairs of stubby legs with big claws, an oval stout body with a round back and lumbering gait. -
BOSS on EXPOSE-R2-Comparative Investigations on Biofilm and Planktonic Cells of Deinococcus Geothermalis As Mission Preparation Tests
EPSC Abstracts Vol. 8, EPSC2013-930, 2013 European Planetary Science Congress 2013 EEuropeaPn PlanetarSy Science CCongress c Author(s) 2013 BOSS on EXPOSE-R2-Comparative Investigations on Biofilm and Planktonic cells of Deinococcus geothermalis as Mission Preparation Tests Corinna Panitz1,2, Petra Rettberg2, Jan Frösler3, Prof. H. - C. Flemming3, Elke Rabbow2, Günther Reitz2 1RWTH Aachen/Medical Faculty, Inst.of Aerospace Medicine - Aachen, Germany, 2DLR, Inst.of Aerospace Medicine, Radiation Biology Dep. - Köln, Germany,3Universität Duisburg-Essen, Fakultät für Chemie - Biofilm Centre - Essen, Germany1; ([email protected] / Fax: +49-2203-61970) Abstract not only bacteria and Archaea, have mechanisms by which they can adhere to surfaces and to each other. Biofilms are of interest for Astrobiological investi- Biofilms are characterized by structural heterogeneity, gations since they are one of the oldest clear signs of genetic diversity, and complex community inter- life on Earth. In the experiment BOSS the hypothesis actions using the EPS matrix for stable, long-term interactions and as an external digestion system. This will be tested if the biofilm form of life with micro- matrix is strong enough that under certain conditions organisms embedded and aggregated in their EPS biofilms can even become fossilized. Usually, abiotic matrix is suited to support long-term survival of particles are associated with the “sticky” biofilm microorganisms under the harsh environmental con- matrix. One benefit of this environment is increased ditions as they exist in space and on Mars and is resistance to different chemical and physical agents superior to the same bacteria in the form of plank- as the dense extracellular matrix and the outer layer tonic cultures. -
Access to Electronic Thesis
Access to Electronic Thesis Author: Khalid Salim Al-Abri Thesis title: USE OF MOLECULAR APPROACHES TO STUDY THE OCCURRENCE OF EXTREMOPHILES AND EXTREMODURES IN NON-EXTREME ENVIRONMENTS Qualification: PhD This electronic thesis is protected by the Copyright, Designs and Patents Act 1988. No reproduction is permitted without consent of the author. It is also protected by the Creative Commons Licence allowing Attributions-Non-commercial-No derivatives. If this electronic thesis has been edited by the author it will be indicated as such on the title page and in the text. USE OF MOLECULAR APPROACHES TO STUDY THE OCCURRENCE OF EXTREMOPHILES AND EXTREMODURES IN NON-EXTREME ENVIRONMENTS By Khalid Salim Al-Abri Msc., University of Sultan Qaboos, Muscat, Oman Mphil, University of Sheffield, England Thesis submitted in partial fulfillment for the requirements of the Degree of Doctor of Philosophy in the Department of Molecular Biology and Biotechnology, University of Sheffield, England 2011 Introductory Pages I DEDICATION To the memory of my father, loving mother, wife “Muneera” and son “Anas”, brothers and sisters. Introductory Pages II ACKNOWLEDGEMENTS Above all, I thank Allah for helping me in completing this project. I wish to express my thanks to my supervisor Professor Milton Wainwright, for his guidance, supervision, support, understanding and help in this project. In addition, he also stood beside me in all difficulties that faced me during study. My thanks are due to Dr. D. J. Gilmour for his co-supervision, technical assistance, his time and understanding that made some of my laboratory work easier. In the Ministry of Regional Municipalities and Water Resources, I am particularly grateful to Engineer Said Al Alawi, Director General of Health Control, for allowing me to carry out my PhD study at the University of Sheffield. -
Representatives of a Novel Archaeal Phylum Or a Fast-Evolving
Open Access Research2005BrochieretVolume al. 6, Issue 5, Article R42 Nanoarchaea: representatives of a novel archaeal phylum or a comment fast-evolving euryarchaeal lineage related to Thermococcales? Celine Brochier*, Simonetta Gribaldo†, Yvan Zivanovic‡, Fabrice Confalonieri‡ and Patrick Forterre†‡ Addresses: *EA EGEE (Evolution, Génomique, Environnement) Université Aix-Marseille I, Centre Saint-Charles, 3 Place Victor Hugo, 13331 Marseille, Cedex 3, France. †Unite Biologie Moléculaire du Gène chez les Extremophiles, Institut Pasteur, 25 rue du Dr Roux, 75724 Paris Cedex ‡ 15, France. Institut de Génétique et Microbiologie, UMR CNRS 8621, Université Paris-Sud, 91405 Orsay, France. reviews Correspondence: Celine Brochier. E-mail: [email protected]. Simonetta Gribaldo. E-mail: [email protected] Published: 14 April 2005 Received: 3 December 2004 Revised: 10 February 2005 Genome Biology 2005, 6:R42 (doi:10.1186/gb-2005-6-5-r42) Accepted: 9 March 2005 The electronic version of this article is the complete one and can be found online at http://genomebiology.com/2005/6/5/R42 reports © 2005 Brochier et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Placement<p>Anteins from analysis 25of Nanoarcheumarchaeal of the positiongenomes equitans of suggests Nanoarcheum in the that archaeal N. equitans phylogeny inis likethe lyarchaeal to be the phylogeny representative using aof large a fast-evolving dataset of concatenatedeuryarchaeal ribosomalineage.</p>l pro- deposited research Abstract Background: Cultivable archaeal species are assigned to two phyla - the Crenarchaeota and the Euryarchaeota - by a number of important genetic differences, and this ancient split is strongly supported by phylogenetic analysis. -
Microbiology in Shale: Alternatives for Enhanced Gas Recovery
Graduate Theses, Dissertations, and Problem Reports 2015 Microbiology in Shale: Alternatives for Enhanced Gas Recovery Yael Tarlovsky Tucker Follow this and additional works at: https://researchrepository.wvu.edu/etd Recommended Citation Tucker, Yael Tarlovsky, "Microbiology in Shale: Alternatives for Enhanced Gas Recovery" (2015). Graduate Theses, Dissertations, and Problem Reports. 6834. https://researchrepository.wvu.edu/etd/6834 This Dissertation is protected by copyright and/or related rights. It has been brought to you by the The Research Repository @ WVU with permission from the rights-holder(s). You are free to use this Dissertation in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you must obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/ or on the work itself. This Dissertation has been accepted for inclusion in WVU Graduate Theses, Dissertations, and Problem Reports collection by an authorized administrator of The Research Repository @ WVU. For more information, please contact [email protected]. Microbiology in Shale: Alternatives for Enhanced Gas Recovery Yael Tarlovsky Tucker Dissertation submitted to the Davis College of Agriculture, Natural Resources and Design at West Virginia University in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Genetics and Developmental Biology Jianbo Yao, Ph.D., Chair James Kotcon, Ph.D. -
In Vivo Interactions of Archaeal Cdc6 Orc1 and Minichromosome
In vivo interactions of archaeal Cdc6͞Orc1 and minichromosome maintenance proteins with the replication origin Fujihiko Matsunaga*, Patrick Forterre*, Yoshizumi Ishino†, and Hannu Myllykallio*§ *Institut de Ge´ne´ tique et Microbiologie, Universite´de Paris-Sud, 91405 Orsay, France; and †Department of Molecular Biology, Biomolecular Engineering Research Institute, 6-2-3 Furuedai, Suita, Osaka 565-0874, Japan Communicated by Bruce W. Stillman, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, July 25, 2001 (received for review May 25, 2001) Although genome analyses have suggested parallels between basis of asymmetry in base composition between leading and archaeal and eukaryotic replication systems, little is known about lagging strands (10, 11). In Pyrococcus abyssi, the location of the the DNA replication mechanism in Archaea. By two-dimensional predicted origin coincides with an early replicating chromosomal gel electrophoreses we positioned a replication origin (oriC) within segment of 80 kb identified by radioactive labeling of chromo- 1 kb in the chromosomal DNA of Pyrococcus abyssi, an anaerobic somal DNA in cultures released from a replication block (12). hyperthermophile, and demonstrated that the oriC is physically Our in silico and labeling data also allowed us to conclude that linked to the cdc6 gene. Our chromatin immunoprecipitation as- the hyperthermophilic archaeon P. abyssi uses a single bidirec- says indicated that P. abyssi Cdc6 and minichromosome mainte- tional origin to replicate its genome. We proposed that this origin nance (MCM) proteins bind preferentially to the oriC region in the would correspond to the long intergenic region conserved in all exponentially growing cells. Whereas the oriC association of MCM three known Pyrococcus sp. -
Tackling the Methanopyrus Kandleri Paradox Céline Brochier*, Patrick Forterre† and Simonetta Gribaldo†
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central Open Access Research2004BrochieretVolume al. 5, Issue 3, Article R17 Archaeal phylogeny based on proteins of the transcription and comment translation machineries: tackling the Methanopyrus kandleri paradox Céline Brochier*, Patrick Forterre† and Simonetta Gribaldo† Addresses: *Equipe Phylogénomique, Université Aix-Marseille I, Centre Saint-Charles, 13331 Marseille Cedex 3, France. †Institut de Génétique et Microbiologie, CNRS UMR 8621, Université Paris-Sud, 91405 Orsay, France. reviews Correspondence: Céline Brochier. E-mail: [email protected] Published: 26 February 2004 Received: 14 November 2003 Revised: 5 January 2004 Genome Biology 2004, 5:R17 Accepted: 21 January 2004 The electronic version of this article is the complete one and can be found online at http://genomebiology.com/2004/5/3/R17 reports © 2004 Brochier et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. ArchaealPhylogeneticsequencedusingrespectively). two phylogeny concatenated genomes, analysis based it of is datasetsthe now on Archaea proteinspossible consisting has ofto been thetest of transcription alternative mainly14 proteins established approach involv and translationed byes in 16S bytranscription rRNAusing machineries: largesequence andsequence 53comparison.tackling ribosomal datasets. the Methanopyrus Withproteins We theanalyzed accumulation(3,275 archaealkandleri and 6,377 of phyparadox comp positions,logenyletely Abstract deposited research Background: Phylogenetic analysis of the Archaea has been mainly established by 16S rRNA sequence comparison. With the accumulation of completely sequenced genomes, it is now possible to test alternative approaches by using large sequence datasets. -
Tardigrade Milnesium Cf. Tardigradum at Different Stages of Development
Effects of Ionizing Radiation on Embryos of the Tardigrade Milnesium cf. tardigradum at Different Stages of Development Eliana Beltra´n-Pardo1,2, K. Ingemar Jo¨ nsson2,3*, Andrzej Wojcik2, Siamak Haghdoost2, Mats Harms- Ringdahl2, Rosa M. Bermu´ dez-Cruz4, Jaime E. Bernal Villegas1 1 Instituto de Gene´tica Humana, Pontificia Universidad Javeriana, Bogota´, Colombia, 2 Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, Stockholm, Sweden, 3 School of Education and Environment, Kristianstad University, Kristianstad, Sweden, 4 Departamento de Gene´tica y Biologı´a Molecular, Centro de Investigacio´n y Estudios Avanzados, CINVESTAV, Me´xico D.F, Me´xico Abstract Tardigrades represent one of the most desiccation and radiation tolerant animals on Earth, and several studies have documented their tolerance in the adult stage. Studies on tolerance during embryological stages are rare, but differential effects of desiccation and freezing on different developmental stages have been reported, as well as dose-dependent effect of gamma irradiation on tardigrade embryos. Here, we report a study evaluating the tolerance of eggs from the eutardigrade Milnesium cf. tardigradum to three doses of gamma radiation (50, 200 and 500 Gy) at the early, middle, and late stage of development. We found that embryos of the middle and late developmental stages were tolerant to all doses, while eggs in the early developmental stage were tolerant only to a dose of 50 Gy, and showed a declining survival with higher dose. We also observed a delay in development of irradiated eggs, suggesting that periods of DNA repair might have taken place after irradiation induced damage. The delay was independent of dose for eggs irradiated in the middle and late stage, possibly indicating a fixed developmental schedule for repair after induced damage. -
Extreme Tolerance in the Eutardigrade Species H. Dujardini
EXTREME TOLERANCE IN THE EUTARDIGRADE SPECIES H. DUJARDINI EXTREME TOLERANCE IN THE EUTARDIGRADE SPECIES HYPSIBIUS DUJARDINI BY: TARUSHIKA VASANTHAN, B. Sc., M. Sc. A Thesis Submitted to the School of Graduate Studies in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy McMaster University © Copyright by Tarushika Vasanthan, September 2017 DOCTOR OF PHILOSOPHY OF SCIENCE (2017) McMaster University (Biology) Hamilton, Ontario TITLE: Examining the Upper and Lower Limits of Extreme Tolerance in the Eutardigrade Species Hypsibius dujardini AUTHOR: Tarushika Vasanthan, M. Sc. (McMaster University), B. Sc. (McMaster University) SUPERVISOR: Professor Jonathon R. Stone NUMBER OF PAGES: 124 ii Ph.D. Thesis - T. Vasanthan McMaster University – Biology – Astrobiology LAY ABSTRACT While interest in tardigrade extreme tolerance research has increased over the last decade, many research areas continue to be underrepresented or non- existent. And, while recognized tardigrade species have been increasing steadily in number, fundamental biological details, like individual life history traits, remain unknown for most. The main objectives in this thesis therefore were to survey the life history traits for the freshwater tardigrade species Hypsibius dujardini, increase knowledge about its extreme-tolerance abilities and describe its utility in astrobiological and biological studies. Research involved tardigrade tolerance to hypergravity, pH levels and radiation exposure (and associated radiation-induced bystander effects) as well as responses to temperature changes during development. Findings reported in this dissertation provide new data about H. dujardini, thereby narrowing the information gap that currently exists in the literature for this species. iii Ph.D. Thesis - T. Vasanthan McMaster University – Biology – Astrobiology ABSTRACT Tardigrades are microscopic animals that can survive exposure to multiple extreme conditions.