Tardigrade Milnesium Cf. Tardigradum at Different Stages of Development
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A Computational Structural Study on the DNA-Protecting Role of The
www.nature.com/scientificreports OPEN A computational structural study on the DNA‑protecting role of the tardigrade‑unique Dsup protein Marina Mínguez‑Toral 1, Bruno Cuevas‑Zuviría 1, María Garrido‑Arandia 1 & Luis F. Pacios 1,2* The remarkable ability of tardigrades to withstand a wide range of physical and chemical extremes has attracted a considerable interest in these small invertebrates, with a particular focus on the protective roles of proteins expressed during such conditions. The discovery that a tardigrade‑unique protein named Dsup (damage suppressor) protects DNA from damage produced by radiation and radicals, has raised expectations concerning its potential applications in biotechnology and medicine. We present in this paper what might be dubbed a “computational experiment” on the Dsup‑DNA system. By means of molecular modelling, calculations of electrostatic potentials and electric felds, and all-atom molecular dynamics simulations, we obtained a dynamic picture of the Dsup‑DNA interaction. Our results suggest that the protein is intrinsically disordered, which enables Dsup to adjust its structure to ft DNA shape. Strong electrostatic attractions and high protein fexibility drive the formation of a molecular aggregate in which Dsup shields DNA. While the precise mechanism of DNA protection conferred by Dsup remains to be elucidated, our study provides some molecular clues of their association that could be of interest for further investigation in this line. Te remarkable ability of tardigrades to survive environmental extremes has attracted the attention of research- ers in biology and biotechnology. Tardigrades, also known as water bears, are a specifc phylum (Tardygrada) which includes about 1,300 species found in terrestrial, freshwater and marine habitats 1–3. -
An Introduction to Phylum Tardigrada - Review
Volume V, Issue V, May 2016 IJLTEMAS ISSN 2278 – 2540 An Introduction to phylum Tardigrada - Review Yashas R Devasurmutt1, Arpitha B M1* 1: R & D Centre, Department of Biotechnology, Dayananda Sagar College of Engineering, Bangalore, India 1*: Corresponding Author: Arpitha B M Abstract: Tardigrades popularly known as water bears are In cryptobiosis (extreme form of anabiosis), the metabolism is micrometazoans with four pairs of lobopod legs. They are the undetectable and the animal is known as tun in this phase. organisms which can live in extreme conditions and are known to Tuns have been known to survive very harsh environmental survive in vacuum and space without protection. Tardigardes conditions such as immersion in helium at -272° C (-458° F) survive in lichens and mosses, usually associated with water film or heating temperatures at 149° C (300° F), exposure to very on mosses, liverworts, and lichens. More species are found in high ionizing radiation and toxic chemical substances and milder environments such as meadows, ponds and lakes. They long durations without oxygen. [4] Figure 2 illustrates the are the first known species to survive in outer space. Tardigrades process of transition of the tardigrades[41]. are closely related to Arthropoda and nematodes based on their morphological and molecular analysis. The cryptobiosis of Figure 2: Transition process of Tardigrades Tardigrades have helped scientists to develop dry vaccines. They have been applied as research subjects in transplantology. Future research would help in more applications of tardigrades in the field of science. Keywords: Tardigrades, cryptobiosis, dry vaccines, Transplantology, space research I. INTRODUCTION ardigrade, a group of tiny arthropod-like animals having T four pairs of stubby legs with big claws, an oval stout body with a round back and lumbering gait. -
Tardigrade Reproduction and Food
Glime, J. M. 2017. Tardigrade Reproduction and Food. Chapt. 5-2. In: Glime, J. M. Bryophyte Ecology. Volume 2. Bryological 5-2-1 Interaction. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 18 July 2020 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology2/>. CHAPTER 5-2 TARDIGRADE REPRODUCTION AND FOOD TABLE OF CONTENTS Life Cycle and Reproductive Strategies .............................................................................................................. 5-2-2 Reproductive Strategies and Habitat ............................................................................................................ 5-2-3 Eggs ............................................................................................................................................................. 5-2-3 Molting ......................................................................................................................................................... 5-2-7 Cyclomorphosis ........................................................................................................................................... 5-2-7 Bryophytes as Food Reservoirs ........................................................................................................................... 5-2-8 Role in Food Web ...................................................................................................................................... 5-2-12 Summary .......................................................................................................................................................... -
Extreme Tolerance in the Eutardigrade Species H. Dujardini
EXTREME TOLERANCE IN THE EUTARDIGRADE SPECIES H. DUJARDINI EXTREME TOLERANCE IN THE EUTARDIGRADE SPECIES HYPSIBIUS DUJARDINI BY: TARUSHIKA VASANTHAN, B. Sc., M. Sc. A Thesis Submitted to the School of Graduate Studies in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy McMaster University © Copyright by Tarushika Vasanthan, September 2017 DOCTOR OF PHILOSOPHY OF SCIENCE (2017) McMaster University (Biology) Hamilton, Ontario TITLE: Examining the Upper and Lower Limits of Extreme Tolerance in the Eutardigrade Species Hypsibius dujardini AUTHOR: Tarushika Vasanthan, M. Sc. (McMaster University), B. Sc. (McMaster University) SUPERVISOR: Professor Jonathon R. Stone NUMBER OF PAGES: 124 ii Ph.D. Thesis - T. Vasanthan McMaster University – Biology – Astrobiology LAY ABSTRACT While interest in tardigrade extreme tolerance research has increased over the last decade, many research areas continue to be underrepresented or non- existent. And, while recognized tardigrade species have been increasing steadily in number, fundamental biological details, like individual life history traits, remain unknown for most. The main objectives in this thesis therefore were to survey the life history traits for the freshwater tardigrade species Hypsibius dujardini, increase knowledge about its extreme-tolerance abilities and describe its utility in astrobiological and biological studies. Research involved tardigrade tolerance to hypergravity, pH levels and radiation exposure (and associated radiation-induced bystander effects) as well as responses to temperature changes during development. Findings reported in this dissertation provide new data about H. dujardini, thereby narrowing the information gap that currently exists in the literature for this species. iii Ph.D. Thesis - T. Vasanthan McMaster University – Biology – Astrobiology ABSTRACT Tardigrades are microscopic animals that can survive exposure to multiple extreme conditions. -
Phylum Tardigrada Doyère, 1840. In: Zhang, Z.-Q
Phylum Tardigrada Doyère, 1840 (3 classes)1 Class Heterotardigrada Marcus, 1927 (2 orders) Order Arthrotardigrada Marcus, 1927 (8 families) Family Archechiniscidae Binda, 1978 (1 genus, 3 species) Family Batillipedidae Ramazzotti, 1962 (1 genus, 26 species) Family Coronarctidae Renaud-Mornant, 1974 (2 genera, 8 species) Family Halechiniscidae Thulin, 1928 (7 subfamilies, 28 genera, 88 species) Family Neoarctidae de Zio Grimaldi, D'Addabbo Gallo & Morone De Lucia, 1992 (1 genus, 1 species) Family Neostygarctidae de Zio Grimaldi, D’Addabbo Gallo & De Lucia Morone, 1987 (1 genus, 1 species) Family Renaudarctidae Kristensen & Higgins, 1984 (1 genus, 1 species) Family Stygarctidae Schulz, 1951 (2 subfamilies, 4 genera, 21 species) Order Echiniscoidea Richters, 1926 (4 families) Family Echiniscoididae Kristensen & Hallas, 1980 (2 genera, 11 species) Family Carphaniidae Binda & Kristensen, 1986 (1 genus, 1 species) Family Oreellidae Ramazzotti, 1962 (1 genus, 2 species) Family Echiniscidae Thulin, 1928 (12 genera, 281 species) Class Mesotardigrada Rahm, 1937 (1 order)2 Order Thermozodia Ramazzotti & Maucci, 1983 (1 family) Family Thermozodiidae Rahm, 1937 (1 genus, 1 species) Class Eutardigrada Richters 1926 (2 orders) Order Apochela Schuster, Nelson, Grigarick & Christenberry, 1980 (1 family) Family Milnesiidae Ramazzotti, 1962 (3 genera, 19+1† species)3 Order Parachela Schuster, Nelson Grigarick & Christenberry, 1980 (4 superfamilies, 9 families) Family Necopinatidae Ramazzotti & Maucci, 1983 (1 genus, 1 species)4 incertae sedis (1 genus: Apodibius, -
The Effect of Dehydration Rates on Anhydrobiotic Survival and Trehalose Levels in Tardigrades Johanna Lundström &Linda Svensson
Tsunami 2006-3 The effect of dehydration rates on anhydrobiotic survival and trehalose levels in tardigrades Johanna Lundström &Linda Svensson The effect of dehydration rates on anhydrobiotic survival and trehalose levels in tardigrades Johanna Lundström Linda Svensson Examensarbete i biologi, 20 poäng Biologi- och Geovetenskapsprogrammet Institutionen för Matematik och Naturvetenskap Högskolan Kristianstad Kristianstad 2006 Institutionen för matematik och naturvetenskap Dept. of Mathematics and Science Högskolan Kristianstad Kristianstad University 291 88 Kristianstad SE-291 88 Kristianstad Sweden Tsunami 2006-3 The effect of dehydration rates on anhydrobiotic survival and trehalose levels in tardigrades Johanna Lundström &Linda Svensson The paradox of life without water, summarized by Crowe 1975: “If metabolism actually comes to a halt in anhydrobiotic tardigrades, we are forced into a seemingly insoluble dilemma about the nature of life; if life is defined in terms of metabolism, anhydrobiotic tardigrades must be ‘dead’, returning to ‘life’ when appropriate conditions are restored. But we know that some of the organisms die while in anhydrobiotic state, in the sense that they do not revive when conditions appropriate for life are restored. Does this mean that they ‘died’ while they were ‘dead’?” 1 Tsunami 2006-3 The effect of dehydration rates on anhydrobiotic survival and trehalose levels in tardigrades Johanna Lundström &Linda Svensson Handledare/supervisor: Ola Persson - Universitetslektor i kemi K. Ingemar Jönsson - Docent i teoretisk ekologi Examinator/examiner: Johan Elmberg - Professor i zooekologi Författare/authors: Johanna Lundström Linda Svensson Svensk titel: Uttorkningshastighetens påverkan på anhydrobiotisk överlevnad och trehaloshalt hos tardigrader. English title: The effect of dehydration rates on anhydrobiotic survival and trehalose levels in tardigrades. -
Zootaxa, Tardigrada, Hypsibiidae, Diphascon
Zootaxa 914: 1–5 (2005) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 914 Copyright © 2005 Magnolia Press ISSN 1175-5334 (online edition) Diphascon (Diphascon) dolomiticum, a new species of Hypsibiidae (Eutardigrada) from Italy GIOVANNI PILATO* & ROBERTO BERTOLANI** * Dipartimento di Biologia Animale “Marcello La Greca” dell’Università, Via Androne 81, 95124 Catania, Italy ** Dipartimento di Biologia Animale dell’Università di Modena e Reggio Emilia, Via Campi 213/D, 41100 Modena, Italy Abstract A new species of eutardigrade, Diphascon (Diphascon) dolomiticum sp. n., is described. It has three macroplacoids and microplacoid; claws short and stout; hind legs with basal margin indented; inter- nal and external claws on the first three pairs of legs almost of the same length; anterior claws on the hind legs longer than the posterior claws. Key words: Tardigrada, Hypsibiidae, Diphascon (Diphascon) dolomiticum sp. n., Italy Introduction In a moss sample collected in Passo del Grostè (Trento) two specimens of Hypsibiidae (Eutardigrada) were found belonging to the subgenus Diphascon. These two specimens have three macroplacoids, microplacoid, and hind legs with indented basal margin. The comparison with the species of the subgenus having these characters convinced us to attribute these specimens to a new species, Diphascon (D.) dolomiticum sp. n., which is described and figured in this paper. Materials and Methods The specimens were found in a moss sample on grassland collected in Passo del Grostè (Trento) at 2450 m a.s.l. in September 1988 by R. Bertolani. They are mounted in polyvi- nyl lactophenol; the holotype is deposited in the Binda and Pilato collection (Department of Animal Biology “Marcello La Greca”, University of Catania), the paratype in the Berto- Accepted by C. -
Phylogenetic Position of Crenubiotus Within Macrobiotoidea (Eutardigrada) with Description of Crenubiotus Ruhesteini Sp
Received: 3 August 2020 | Revised: 2 December 2020 | Accepted: 4 December 2020 DOI: 10.1111/jzs.12449 ORIGINAL ARTICLE When DNA sequence data and morphological results fit together: Phylogenetic position of Crenubiotus within Macrobiotoidea (Eutardigrada) with description of Crenubiotus ruhesteini sp. nov Roberto Guidetti1 | Ralph O. Schill2 | Ilaria Giovannini1 | Edoardo Massa1 | Sara Elena Goldoni1 | Charly Ebel3 | Marc I. Förschler3 | Lorena Rebecchi1 | Michele Cesari1 1Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Abstract Italy The integration of morphological data and data from molecular genetic markers is 2Institute of Biomaterials and Biomolecular Systems, University of important for examining the taxonomy of meiofaunal animals, especially for eutardi- Stuttgart, Stuttgart, Germany grades, which have a reduced number of morphological characters. This integrative 3 Department of Ecosystem Monitoring, approach has been used more frequently, but several tardigrade taxa lack molecular Research and Conservation, Black Forest National Park, Freudenstadt, Germany confirmation. Here, we describe Crenubiotus ruhesteini sp. nov. from the Black Forest (Germany) integratively, with light and electron microscopy and with sequences of Correspondence Lorena Rebecchi, Department of Life four molecular markers (18S, 28S, ITS2, cox1 genes). Molecular genetic markers were Sciences, University of Modena and also used to confirm the recently described Crenubiotus genus and to establish its Reggio Emilia, via G. Campi 213/D, 41125 Modena, Italy. phylogenetic position within the Macrobiotoidea (Eutardigrada). The erection of Email: [email protected] Crenubiotus and its place in the family Richtersiidae are confirmed. Richtersiidae is redescribed as Richtersiusidae fam. nov. because its former name was a junior homo- nym of a nematode family. -
Contribution to the Knowledge on Distribution of Tardigrada in Turkey
diversity Article Contribution to the Knowledge on Distribution of Tardigrada in Turkey Duygu Berdi * and Ahmet Altında˘g Department of Biology, Faculty of Science, Ankara University, 06100 Ankara, Turkey; [email protected] * Correspondence: [email protected] Received: 28 December 2019; Accepted: 4 March 2020; Published: 6 March 2020 Abstract: Tardigrades have been occasionally studied in Turkey since 1973. However, species number and distribution remain poorly known. In this study, distribution of Tardigrades in the province of Karabük, which is located in northern coast (West Black Sea Region) of Turkey, was carried out. Two moss samples were collected from the entrance of the Bulak (Mencilis) Cave. A total of 30 specimens and 14 eggs were extracted. Among the specimens; Echiniscus granulatus (Doyère, 1840) and Diaforobiotus islandicus islandicus (Richters, 1904) are new records for Karabük. Furthermore, this study also provides a current checklist of tardigrade species reported from Turkey, indicating their localities, geographic distribution and taxonomical comments. Keywords: cave; Diaforobiotus islandicus islandicus; Echiniscus granulatus; Karabük; Tardigrades; Turkey 1. Introduction Caves are not only one of the most important forms of karst, but also one of the most unique forms of karst topography in terms of both size and formation characteristics, which are formed by mechanical melting and partly chemical erosion of water [1]. Most of the caves in Turkey were developed within the Cretaceous and Tertiary limestone, metamorphic limestone [2], and up to now ca. 40 000 karst caves have been recorded in Turkey. Although, most of these caves are found in the karstic plateaus zone in the Toros System, important caves, such as Kızılelma, Sofular, Gökgöl and Mencilis, have also formed in the Western Black Sea [3]. -
An Integrative Redescription of Hypsibius Dujardini (Doyère, 1840), the Nominal Taxon for Hypsibioidea (Tardigrada: Eutardigrada)
Zootaxa 4415 (1): 045–075 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2018 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4415.1.2 http://zoobank.org/urn:lsid:zoobank.org:pub:AA49DFFC-31EB-4FDF-90AC-971D2205CA9C An integrative redescription of Hypsibius dujardini (Doyère, 1840), the nominal taxon for Hypsibioidea (Tardigrada: Eutardigrada) PIOTR GĄSIOREK, DANIEL STEC, WITOLD MOREK & ŁUKASZ MICHALCZYK* Institute of Zoology and Biomedical Research, Jagiellonian University, Gronostajowa 9, 30-387 Kraków, Poland *Corresponding author. E-mail: [email protected] Abstract A laboratory strain identified as “Hypsibius dujardini” is one of the best studied tardigrade strains: it is widely used as a model organism in a variety of research projects, ranging from developmental and evolutionary biology through physiol- ogy and anatomy to astrobiology. Hypsibius dujardini, originally described from the Île-de-France by Doyère in the first half of the 19th century, is now the nominal species for the superfamily Hypsibioidea. The species was traditionally con- sidered cosmopolitan despite the fact that insufficient, old and sometimes contradictory descriptions and records prevent- ed adequate delineations of similar Hypsibius species. As a consequence, H. dujardini appeared to occur globally, from Norway to Samoa. In this paper, we provide the first integrated taxonomic redescription of H. dujardini. In addition to classic imaging by light microscopy and a comprehensive morphometric dataset, we present scanning electron photomi- crographs, and DNA sequences for three nuclear markers (18S rRNA, 28S rRNA, ITS-2) and one mitochondrial marker (COI) that are characterised by various mutation rates. -
An Upgraded Comprehensive Multilocus Phylogeny of the Tardigrada Tree of Life
An upgraded comprehensive multilocus phylogeny of the Tardigrada tree of life Guil, Noemi; Jørgensen, Aslak; Kristensen, Reinhardt Published in: Zoologica Scripta DOI: 10.1111/zsc.12321 Publication date: 2019 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): Guil, N., Jørgensen, A., & Kristensen, R. (2019). An upgraded comprehensive multilocus phylogeny of the Tardigrada tree of life. Zoologica Scripta, 48(1), 120-137. https://doi.org/10.1111/zsc.12321 Download date: 26. sep.. 2021 Received: 19 April 2018 | Revised: 24 September 2018 | Accepted: 24 September 2018 DOI: 10.1111/zsc.12321 ORIGINAL ARTICLE An upgraded comprehensive multilocus phylogeny of the Tardigrada tree of life Noemi Guil1 | Aslak Jørgensen2 | Reinhardt Kristensen3 1Department of Biodiversity and Evolutionary Biology, Museo Nacional de Abstract Ciencias Naturales (MNCN‐CSIC), Madrid, Providing accurate animals’ phylogenies rely on increasing knowledge of neglected Spain phyla. Tardigrada diversity evaluated in broad phylogenies (among phyla) is biased 2 Department of Biology, University of towards eutardigrades. A comprehensive phylogeny is demanded to establish the Copenhagen, Copenhagen, Denmark representative diversity and propose a more natural classification of the phylum. So, 3Zoological Museum, Natural History Museum of Denmark, University of we have performed multilocus (18S rRNA and 28S rRNA) phylogenies with Copenhagen, Copenhagen, Denmark Bayesian inference and maximum likelihood. We propose the creation of a new class within Tardigrada, erecting the order Apochela (Eutardigrada) as a new Tardigrada Correspondence Noemi Guil, Department of Biodiversity class, named Apotardigrada comb. n. Two groups of evidence support its creation: and Evolutionary Biology, Museo Nacional (a) morphological, presence of cephalic appendages, unique morphology for claws de Ciencias Naturales (MNCN‐CSIC), Madrid, Spain. -
Molecular Data Support the Dispersal Ability of the Glacier Tardigrade Hypsibius Klebelsbergi Mihelčič, 1959 Across the Environmental Barrier (Tardigrada)
Entomol. Mitt. Zool. Mus. Hamburg 17 (194): 233-240 Hamburg, 15. November 2015 ISSN 0044-5223 Molecular data support the dispersal ability of the glacier tardigrade Hypsibius klebelsbergi Mihelčič, 1959 across the environmental barrier (Tardigrada) MIROSLAWA DABERT, HIERONYMUS DASTYCH & JACEK DABERT (with 4 figures) Abstract Two populations of the obligate glacier dweller, the tardigrade Hypsibius klebels- bergi Mihelčič, 1959, have been compared based on the mitochondrial COI gene frag- ment (DNA-barcode), a character hitherto unknown for this species. The animals orig- inated from cryoconite holes on two separated glaciers located at different altitudes in the Ötztal Alps. The lack of divergence in the mitochondrial COI as well as in nuclear 18S and 28S rRNA gene sequences between these two populations indicates the presence of probably only one population on both glaciers separated by a mountain’s ridge. Sequence data of the 18S rRNA gene are compared with such data already available for H. klebelsbergi. K e y w o r d s: Tardigrada, Hypsibius klebelsbergi, populations, glaciers, dispersion, COI, DNA-barcode, 18S rRNA, 28S rRNA, the Ötztal Alps, Austria. Introduction The eutardigrade Hypsibius klebelsbergi Mihelčič, 1959 (the Hypsibiidae) represents the obligate glacier dweller (Dastych 2009, 2015) recorded so far only from several glaciers in the Austrian Central Alps. The species (Figs 1, 2) inhabits there the water-filled micro-caverns on the glacier surface, so-called cryoconite holes (e.g. Steinbock 1936, 1957, Dastych et al. 2003). Two other taxa, supposedly also obligate glacier inhabitants, Hypsibius janetscheki Ramazzotti, 1968 and H. thaleri Dastych, 2004, have been once only found on the glacier Nero in the Himalayas (Ramazzotti 1968, Janetschek 1990, Dastych 2004 a, b).