SYMPOSIUM Other Helicobacters Involved in Human Diseases
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A Focus on Protein Glycosylation in Lactobacillus
International Journal of Molecular Sciences Review How Sweet Are Our Gut Beneficial Bacteria? A Focus on Protein Glycosylation in Lactobacillus Dimitrios Latousakis and Nathalie Juge * Quadram Institute Bioscience, The Gut Health and Food Safety Institute Strategic Programme, Norwich Research Park, Norwich NR4 7UA, UK; [email protected] * Correspondence: [email protected]; Tel.: +44-(0)-160-325-5068; Fax: +44-(0)-160-350-7723 Received: 22 November 2017; Accepted: 27 December 2017; Published: 3 January 2018 Abstract: Protein glycosylation is emerging as an important feature in bacteria. Protein glycosylation systems have been reported and studied in many pathogenic bacteria, revealing an important diversity of glycan structures and pathways within and between bacterial species. These systems play key roles in virulence and pathogenicity. More recently, a large number of bacterial proteins have been found to be glycosylated in gut commensal bacteria. We present an overview of bacterial protein glycosylation systems (O- and N-glycosylation) in bacteria, with a focus on glycoproteins from gut commensal bacteria, particularly Lactobacilli. These emerging studies underscore the importance of bacterial protein glycosylation in the interaction of the gut microbiota with the host. Keywords: protein glycosylation; gut commensal bacteria; Lactobacillus; glycoproteins; adhesins; lectins; O-glycosylation; N-glycosylation; probiotics 1. Introduction Protein glycosylation, i.e., the covalent attachment of a carbohydrate moiety onto a protein, is a highly ubiquitous protein modification in nature, and considered to be one of the post-translational modifications (PTM) targeting the most diverse group of proteins [1]. Although it was originally believed to be restricted to eukaryotic systems and later to archaea, it has become apparent nowadays that protein glycosylation is a common feature in all three domains of life. -
Helicobacter Pylori and Peptic Ulcers
Helicobacter pylori and Peptic Ulcers [Announcer] This podcast is presented by the Centers for Disease Control and Prevention. CDC – safer, healthier people. [Karen Hunter] Hello, I'm Karen Hunter. With me today is Dr. David Swerdlow, senior advisor for epidemiology in the National Center for Immunization and Respiratory Diseases at the Centers for Disease Control and Prevention. We’re talking about a paper that appears in the September 2010 issue of the CDC's journal, Emerging Infectious Diseases. The article looks at hospitalization rates for peptic ulcer disease in American patients who may have been infected with the bacteria Helicobacter pylori. Welcome, Dr. Swerdlow. [David Swerdlow] Thank you very much. [Karen Hunter] Dr. Swerdlow, what is Helicobacter pylori and how does it affect people? [David Swerdlow] Helicobacter pylori, or H. pylori for short, is a very common spiral-shaped bacteria that can colonize your stomach. It is estimated that about 50 percent of the world is infected, with most people becoming infected in childhood. Although the majority of people infected with H. pylori do not have any symptoms, infection with the bacteria can cause a variety of gastrointestinal diseases, including peptic ulcer disease and gastric cancers. The rate of infection with H. pylori is decreasing in most of the world, primarily because of improvements in hygiene and sanitation, but since infection is life-long, unless treated, many people are still at risk for peptic ulcer disease. [Karen Hunter] What is it about an infection with H. pylori that increases the risk of developing peptic ulcer disease? [David Swerdlow] H. pylori can colonize and damage the protective lining of your stomach and create chronic inflammation. -
Journal of Clinical Microbiology
JOURNAL OF CLINICAL MICROBIOLOGY Volume 45 September 2007 No. 9 MINIREVIEW 16S rRNA Gene Sequencing for Bacterial Identification in J. Michael Janda and Sharon L. 2761–2764 the Diagnostic Laboratory: Pluses, Perils, and Pitfalls Abbott BACTERIOLOGY Is the Volume of Blood Cultured Still a Significant Factor in Emilio Bouza, Dolores Sousa, 2765–2769 the Diagnosis of Bloodstream Infections? Marta Rodrı´guez-Cre´ixems, Juan Garcı´a Lechuz, and Patricia Mun˜oz Reclassification of Phenotypically Identified Staphylococcus Takashi Sasaki, Ken Kikuchi, 2770–2778 intermedius Strains Yoshikazu Tanaka, Namiko Takahashi, Shinichi Kamata, and Keiichi Hiramatsu Evaluation of Gen-Probe APTIMA-Based Neisseria Erik Munson, Vivian Boyd, Jolanta 2793–2797 gonorrhoeae and Chlamydia trachomatis Confirmatory Testing Czarnecka, Judy Griep, Brian Lund, in a Metropolitan Setting of High Disease Prevalence Nancy Schaal, and Jeanne E. Hryciuk Convenient Test Using a Combination of Chelating Agents Soo-Young Kim, Seong Geun Hong, 2798–2801 for Detection of Metallo--Lactamases in the Clinical Ellen S. Moland, and Kenneth S. Laboratory Thomson Molecular Characterization of Vancomycin-Resistant Bo Zheng, Haruyoshi Tomita, Yong 2813–2818 Enterococcus faecium Isolates from Mainland China Hong Xiao, Shan Wang, Yun Li, and Yasuyoshi Ike Bacteriology of Moderate-to-Severe Diabetic Foot Infections Diane M. Citron, Ellie J. C. 2819–2828 and In Vitro Activity of Antimicrobial Agents Goldstein, C. Vreni Merriam, Benjamin A. Lipsky, and Murray A. Abramson Outbreak of Pseudomonas -
Westchester County Restaurants
RESTAURANTS THAT ARE ENOUGH TO MAKE YOU SICK: AN ANALYSIS OF UNSANITARY CONDITIONS AT NEW YORK CITY AND WESTCHESTER COUNTY RESTAURANTS STATE SENATOR JEFF KLEIN RANKING MINORITY MEMBER CONSUMER PROTECTION COMMITTEE RESTAURANTS ENOUGH TO MAKE YOU SICK: AN ANALYSIS OF UNSANITARY CONDITIONS AT NEW YORK CITY AND WESTCHESTER COUNTY RESTAURANT S How Consumers Are At Risk There is little reason why eating a meal in a restaurant should be any more dangerous than eating a meal in your own home. The volume and variety of foods prepared in a restaurant kitchen makes sanitation more critical, but the basic rules of cleanliness, temperature control and pest control are universal. The major difference is that the restaurant patron cannot usually see the kitchen where his or her meal is prepared. These unseen risks are present and they can pose a serious threat to the public. Worse, they may go undetected and unaddressed for extended periods of time. Although inspections are the first step toward catching these problems before they become public health hazards, many problems linger long after they have been cited by inspectors because restaurants can continue to operate with ongoing violations, with no warning to consumers. Many of the violations we have looked at, and many of the most common violations, are easily correctable, and if eradicated, greatly reduce the probability of an outbreak of food borne illness. By simply ensuring that potentially hazardous foods are properly stored, that they do not come into contact with other ready-to-eat foods, and ensuring that employees wash their hand or change their gloves after handling such foods would almost eliminate the risks posed by these foods. -
Genomics of Helicobacter Species 91
Genomics of Helicobacter Species 91 6 Genomics of Helicobacter Species Zhongming Ge and David B. Schauer Summary Helicobacter pylori was the first bacterial species to have the genome of two independent strains completely sequenced. Infection with this pathogen, which may be the most frequent bacterial infec- tion of humanity, causes peptic ulcer disease and gastric cancer. Other Helicobacter species are emerging as causes of infection, inflammation, and cancer in the intestine, liver, and biliary tract, although the true prevalence of these enterohepatic Helicobacter species in humans is not yet known. The murine pathogen Helicobacter hepaticus was the first enterohepatic Helicobacter species to have its genome completely sequenced. Here, we consider functional genomics of the genus Helico- bacter, the comparative genomics of the genus Helicobacter, and the related genera Campylobacter and Wolinella. Key Words: Cytotoxin-associated gene; H-Proteobacteria; gastric cancer; genomic evolution; genomic island; hepatobiliary; peptic ulcer disease; type IV secretion system. 1. Introduction The genus Helicobacter belongs to the family Helicobacteriaceae, order Campylo- bacterales, and class H-Proteobacteria, which is also known as the H subdivision of the phylum Proteobacteria. The H-Proteobacteria comprise of a relatively small and recently recognized line of descent within this extremely large and phenotypically diverse phy- lum. Other genera that colonize and/or infect humans and animals include Campylobac- ter, Arcobacter, and Wolinella. These organisms are all microaerophilic, chemoorgano- trophic, nonsaccharolytic, spiral shaped or curved, and motile with a corkscrew-like motion by means of polar flagella. Increasingly, free living H-Proteobacteria are being recognized in a wide range of environmental niches, including seawater, marine sedi- ments, deep-sea hydrothermal vents, and even as symbionts of shrimp and tubeworms in these environments. -
Helicobacter Heilmannii Associated Erosive Gastritis
CASE REPORT Helicobacter heilmannii Associated Erosive Gastritis Takafumi Yamamoto, Jun Matsumoto, Ken Shiota, Shin-ichi Kitajima*, Masamichi Goto*, Masaomi Imaizumi* and Terukatsu Arima The spiral bacteria, Helicobacter heilmannii (H heilmannii), distinct from Helicobacterpylori (H. pylori), was found in the gastric mucosa of a 71-year-old manwithout clinical symptoms. The endoscopic examination revealed erosive gastritis. Rapid urease test from the antral specimen was positive, but both culture and immunohistological staining for Hpylori were negative. Touch smear cytology showedtightly spiral bacteria, which were consistent with H.heilmannii. At the second endoscopy after medication regimen for eradication of H. pylori, inflammation was decreased and the rapid urease test was negative. The second cytology showedno evidence of Hheilmannii. Anti-H.pylori therapy may be a useful medication for H.heilmannii. (Internal Medicine 38: 240-243, 1999) Keywords: gastric spiral bacteria, touch smear cytology, eradication Introduction previously been healthy. He had a clinical history of Hansen's disease (leprosy). His family history was noncontributory. He Since 1983 when Warren and Marshall (1) first described reported no history of smoking or alcohol, but earlier had a pet Helicohacterpylori (H.pylori) and its association with chronic cat. Neither anemia nor jaundice was present. Abdomenwas gastritis, there have been manyreports of microbiological and flat and soft. Liver, spleen and mass were not palpable. Labo- clinical studies about H.pylori infection. It has been generally ratory data of our clinic waswithin the normal range. Serum accepted that H.pylori infection causes atrophic gastritis, gas- anti-H.pylori immunoglobulin G (IgG) antibody (HELICO-G) tric ulcer and duodenal ulcer. -
Comparative Analysis of Four Campylobacterales
REVIEWS COMPARATIVE ANALYSIS OF FOUR CAMPYLOBACTERALES Mark Eppinger*§,Claudia Baar*§,Guenter Raddatz*, Daniel H. Huson‡ and Stephan C. Schuster* Abstract | Comparative genome analysis can be used to identify species-specific genes and gene clusters, and analysis of these genes can give an insight into the mechanisms involved in a specific bacteria–host interaction. Comparative analysis can also provide important information on the genome dynamics and degree of recombination in a particular species. This article describes the comparative genomic analysis of representatives of four different Campylobacterales species — two pathogens of humans, Helicobacter pylori and Campylobacter jejuni, as well as Helicobacter hepaticus, which is associated with liver cancer in rodents and the non-pathogenic commensal species, Wolinella succinogenes. ε CHEMOLITHOTROPHIC The -subdivision of the Proteobacteria is a large group infection can lead to gastric cancer in humans 9–11 An organism that is capable of of CHEMOLITHOTROPHIC and CHEMOORGANOTROPHIC microor- and liver cancer in rodents, respectively .The using CO, CO2 or carbonates as ganisms with diverse metabolic capabilities that colo- Campylobacter representative C. jejuni is one of the the sole source of carbon for cell nize a broad spectrum of ecological habitats. main causes of bacterial food-borne illness world- biosynthesis, and that derives Representatives of the ε-subgroup can be found in wide, causing acute gastroenteritis, and is also energy from the oxidation of reduced inorganic or organic extreme marine and terrestrial environments ranging the most common microbial antecedent of compounds. from oceanic hydrothermal vents to sulphidic cave Guillain–Barré syndrome12–15.Besides their patho- springs. Although some members are free-living, others genic potential in humans, C. -
Helicobacter Spp. — Food- Or Waterborne Pathogens?
FRI FOOD SAFETY REVIEWS Helicobacter spp. — Food- or Waterborne Pathogens? M. Ellin Doyle Food Research Institute University of Wisconsin–Madison Madison WI 53706 Contents34B Introduction....................................................................................................................................1 Virulence Factors ...........................................................................................................................2 Associated Diseases .......................................................................................................................2 Gastrointestinal Disease .........................................................................................................2 Neurological Disease..............................................................................................................3 Other Diseases........................................................................................................................4 Epidemiology.................................................................................................................................4 Prevalence..............................................................................................................................4 Transmission ..........................................................................................................................4 Summary .......................................................................................................................................5 -
Arcobacter, Campylobacter, and Helicobacter in Reptiles
fmicb-10-01086 May 28, 2019 Time: 15:12 # 1 REVIEW published: 15 May 2019 doi: 10.3389/fmicb.2019.01086 Living in Cold Blood: Arcobacter, Campylobacter, and Helicobacter in Reptiles Maarten J. Gilbert1,2*, Birgitta Duim1,3, Aldert L. Zomer1,3 and Jaap A. Wagenaar1,3,4 1 Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands, 2 Reptile, Amphibian and Fish Conservation Netherlands, Nijmegen, Netherlands, 3 WHO Collaborating Center for Campylobacter/OIE Reference Laboratory for Campylobacteriosis, Utrecht, Netherlands, 4 Wageningen Bioveterinary Research, Lelystad, Netherlands Species of the Epsilonproteobacteria genera Arcobacter, Campylobacter, and Helicobacter are commonly associated with vertebrate hosts and some are considered significant pathogens. Vertebrate-associated Epsilonproteobacteria are often considered to be largely confined to endothermic mammals and birds. Recent studies have shown that ectothermic reptiles display a distinct and largely unique Epsilonproteobacteria community, including taxa which can cause disease in humans. Several Arcobacter taxa are widespread amongst reptiles and often show a broad host range. Reptiles carry a large diversity of unique and novel Helicobacter taxa, which Edited by: John R. Battista, apparently evolved in an ectothermic host. Some species, such as Campylobacter Louisiana State University, fetus, display a distinct intraspecies host dichotomy, with genetically divergent lineages United States occurring either in mammals or reptiles. These taxa can provide valuable insights in Reviewed by: Heriberto Fernandez, host adaptation and co-evolution between symbiont and host. Here, we present an Austral University of Chile, Chile overview of the biodiversity, ecology, epidemiology, and evolution of reptile-associated Zuowei Wu, Epsilonproteobacteria from a broader vertebrate host perspective. -
Genomic Analysis of Helicobacter Himalayensis Sp. Nov. Isolated from Marmota Himalayana
Genomic analysis of Helicobacter himalayensis sp. nov. isolated from Marmota himalayana Shouhui Hu Peking University Shougang Hospital Lina Niu Hainan Medical University Lei Wu Peking University Shougang Hospital Xiaoxue Zhu Peking University Shougang Hospital Yu Cai Peking University Shougang Hospital Dong Jin Chinese Center for Disease Control and Prevention Linlin Yan Peking University Shougang Hospital Fan Zhao ( [email protected] ) Peking University Shougang Hospital https://orcid.org/0000-0002-8164-5016 Research article Keywords: Helicobacter, Comparative genomics, Helicobacter himalayensis, Virulence factor Posted Date: December 1st, 2020 DOI: https://doi.org/10.21203/rs.3.rs-55448/v3 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published on November 23rd, 2020. See the published version at https://doi.org/10.1186/s12864-020-07245-y. Page 1/18 Abstract Background: Helicobacter himalayensis was isolated from Marmota himalayana in the Qinghai-Tibet Plateau, China, and is a new non-H. pylori species, with unclear taxonomy, phylogeny, and pathogenicity. Results: A comparative genomic analysis was performed between the H. himalayensis type strain 80(YS1)T and other the genomes of Helicobacter species present in the National Center for Biotechnology Information (NCBI) database to explore the molecular evolution and potential pathogenicity of H. himalayensis. H. himalayensis 80(YS1)T formed a clade with H. cinaedi and H. hepaticus that was phylogenetically distant from H. pylori. The H. himalayensis genome showed extensive collinearity with H. hepaticus and H. cinaedi. However, it also revealed a low degree of genome collinearity with H. -
Helicobacter Species
technical sheet Helicobacter species Classification colonization. Most animals that carry Helicobacter Gram-negative bacteria; spiral, fusiform, or curved; spp. are asymptomatic. Disease in immunocompetent some with flagella animals caused by Helicobacter is almost exclusively limited to susceptible strains of mice infected with Family either H. bilis or H. hepaticus. Immunodeficient animals seem susceptible to disease due to a broader range Helicobacteriaceae of Helicobacter spp. In susceptible animals, the main clinical sign associated with Helicobacter infection is The species currently described in rats and mice are: H. bilis, rectal prolapse secondary to typhlitis or typhlocolitis. H. ganmani, H. hepaticus, H. muridarum, H. mastomyrinus, Helicobacter-infected animals can also present with H. rappini, H. rodentium, and H. typhlonius (mice) and diarrhea. H. hepaticus may also be associated with H. bilis, H. muridarium, H. rodentium, H. trogontum, and the development of liver and colon cancer in some H. typhlonius (rats). The Helicobacter species associated with strains of mice, such as the A/J. On histopathology, clinical disease in rats and mice are primarily H. bilis and typhlocolitis, and hepatitis may be seen. The common H. hepaticus. rodent Helicobacter spp. do not colonize the stomach, so gastritis is not seen. Affected species Almost every species of mammal examined appears to Diagnosis have at least one associated Helicobacter species. Serologic diagnosis of Helicobacter infection is possible. Serology is not commercially available Frequency because although the assay is sensitive (after a Common in both wild rodents and laboratory animal time delay, to allow for antibody production), it is not facilities. specific. It is also not clear whether intestinal colonization with all Helicobacter spp. -
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883 | Desulfovibrio vulgaris | DvMF_2825 298701 | Desulfovibrio | DA2_3337 1121434 | Halodesulfovibrio aestuarii | AULY01000007_gene1045 207559 | Desulfovibrio alaskensis | Dde_0991 935942 | Desulfonatronum lacustre | KI912608_gene2193 159290 | Desulfonatronum | JPIK01000018_gene1259 1121448 | Desulfovibrio gigas | DGI_0655 1121445 | Desulfovibrio desulfuricans | ATUZ01000018_gene2316 525146 | Desulfovibrio desulfuricans | Ddes_0159 665942 | Desulfovibrio | HMPREF1022_02168 457398 | Desulfovibrio | HMPREF0326_00453 363253 | Lawsonia intracellularis | LI0397 882 | Desulfovibrio vulgaris | DVU_0784 1121413 | Desulfonatronovibrio hydrogenovorans | JMKT01000008_gene1463 555779 | Desulfonatronospira thiodismutans | Dthio_PD0935 690850 | Desulfovibrio africanus | Desaf_1578 643562 | Pseudodesulfovibrio aespoeensis | Daes_3115 1322246 | Pseudodesulfovibrio piezophilus | BN4_12523 641491 | Desulfovibrio desulfuricans | DND132_2573 1121440 | Desulfovibrio aminophilus | AUMA01000002_gene2198 1121456 | Desulfovibrio longus | ATVA01000018_gene290 526222 | Desulfovibrio salexigens | Desal_3460 1121451 | Desulfovibrio hydrothermalis | DESAM_21057 1121447 | Desulfovibrio frigidus | JONL01000008_gene3531 1121441 | Desulfovibrio bastinii | AUCX01000006_gene918 1121439 | Desulfovibrio alkalitolerans | dsat_0220 941449 | Desulfovibrio | dsx2_0067 1307759 | Desulfovibrio | JOMJ01000003_gene2163 1121406 | Desulfocurvus vexinensis | JAEX01000012_gene687 1304872 | Desulfovibrio magneticus | JAGC01000003_gene2904 573370 | Desulfovibrio magneticus | DMR_04750