Global Diversity of Ascidiacea
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Bacteria Associated with Tunicate, Polycarpa Aurata, from Lease Sea, Maluku, Indonesia Exhibiting Anti-Multidrug Resistant Bacteria
BIODIVERSITAS ISSN: 1412-033X Volume 20, Number 4, April 2019 E-ISSN: 2085-4722 Pages: 956-964 DOI: 10.13057/biodiv/d200404 Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria DIAH AYUNINGRUM1,5, RHESI KRISTIANA1, AYUNDA AINUN NISA2, SEPTHY KUSUMA RADJASA2, SAKTI IMAM MUCHLISSIN2,4, OCKY KARNA RADJASA2,3, AGUS SABDONO2, AGUS TRIANTO2, 1Department of Coastal Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia 2Department of Marine Science, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedarto, SH, Tembalang, Semarang 50275, Central Java, Indonesia. Tel.: +62-24-7474698, Fax.: +62-24-7474698, email: [email protected]. 3Directorate of Research and Community Services, Ministry of Research, Technology and Higher Education. D Building, Jl. Jenderal Sudirman Pintu Satu, Senayan, Jakarta Pusat 10279, Indonesia 4Tropical Marine Biotechnology Laboratory, Universitas Diponegoro Jl. Lingkar Utara Undip, Semarang 50275, Central Java, Indonesia 1Department of Aquatic Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia Manuscript received: 30 January 2019. Revision accepted: 10 March 2019. Abstract. Ayuningrum D, Kristiana R, Nisa AA, Radjasa SK, Muchlissin SI, Radjasa OK, Sabdono A, Trianto A. 2019. Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria. Biodiversitas 20: 956-964. Tunicate is a rich secondary metabolites producer with various biological activities whether as an original producer or produced by the associated microorganisms. In this study, a total of 11 tunicate specimens were identified as Polycarpa aurata with four color variations based on morphological characteristic and COI gene identification and BLAST analysis. -
Grebmeier, Jacqueline M., Lee W.Cooper, and Michael J
Limnol. Oceanogr., 35(S), 1990, 1 182-1195 0 1990, by the American Society of Limnology and Oceanography, Inc. Oxygen isotopic composition of bottom seawater and tunicate cellulose used as indicators of water masses in the northern Bering and Chukchi Seas Abstract -Oxygen isotopic composition of rivers, evaporated surface ocean waters, bottom seawater and tunicate cellulose were used melting glaciers, and melting sea ice can be as short-term and long-term indicators, respec- tively, of water-mass characteristics in the north- separated and water types characterized (e.g. ern Bering and Chukchi Seas. Oxygen isotopic Epstein and Mayeda 1953; Tan and Strain composition of northeastern Bering Sea waters is 1980; Bedard et al. 198 1). In contrast to the influenced by Yukon River inflows of IsO-de- variability in the surface ocean, average 180 : pleted continental water mixing with relatively 180-enriched waters contributed by the Anadyr 160 ratios for the deep (> 500 m) sea vary Current. Tunicate cellulose sampled under Alas- by < 1%~ when expressed in the conven- ka coastal water is more depleted in IsO than that tional 6 notation: collected under Bering shelf and Anadyr waters, which reflects the oxygen isotopic composition 6180 = (Rstd/R,mple- 1) X 1030/oo (1) of these waters. Tunicate cellulose collected un- der the mixed Bering shelf water displays inter- where R = 180 : l 6O and std is Standard Mean mediate 6180 values. Oxygen isotopic analyses of Ocean Water (SMOW). The low variability bottom seawater were used to determine the spa- in V80 values of waters in the deep sea has tial location and influence of continental and led to widespread use of oxygen isotopes as coastal-derived precipitation and of sea-ice for- mation on water-mass structure on the continen- a paleothermometric indicator. -
Temperature and Salinity Sensitivity of the Invasive Ascidian Microcosmus Exasperatus Heller, 1878
Aquatic Invasions (2016) Volume 11, Issue 1: 33–43 DOI: http://dx.doi.org/10.3391/ai.2016.11.1.04 Open Access © 2016 The Author(s). Journal compilation © 2016 REABIC Research Article Temperature and salinity sensitivity of the invasive ascidian Microcosmus exasperatus Heller, 1878 1 1,2 Lilach Raijman Nagar and Noa Shenkar * 1Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Tel Aviv, 69978, Israel 2The Steinhardt Museum of Natural History and National Research Center, Tel Aviv University, Tel Aviv, Israel *Corresponding author E-mail: [email protected] Received: 5 May 2015 / Accepted: 24 November 2015 / Published online: 30 December 2015 Handling editor: Vadim Panov Abstract Environmental factors, such as temperature and salinity, are known to influence distribution patterns and invasion success in ascidians. The solitary ascidian Microcosmus exasperatus Heller, 1878 has a wide global distribution and can be found in both tropical and sub-tropical waters. In the Mediterranean Sea, it is considered to be an invasive species introduced through the Suez Canal, with a restricted distribution in the eastern Mediterranean. Despite its global distribution, the environmental tolerances of this species are poorly known. We examined the effect of varying temperature and salinity on the survival of adult individuals of M. exasperatus in a laboratory setting to partially determine its environmental tolerance range. In addition, it’s global and local distribution as well as the seasonal abundance in ‘Akko Bay (northern Mediterranean coast of Israel) were examined. Field observations and laboratory experiments show that M. exasperatus is able to tolerate a temperature range of 12–30 ºC, and salinity of 37–45, but it survived poorly in salinity of 33–35 and temperatures > 32 ºC. -
Life-History Strategies of a Native Marine Invertebrate Increasingly Exposed to Urbanisation and Invasion
Temporal Currency: Life-history strategies of a native marine invertebrate increasingly exposed to urbanisation and invasion A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science in Zoology University of Canterbury New Zealand Jason Suwandy 2012 Contents List of Figures ......................................................................................................................................... iii List of Tables .......................................................................................................................................... vi Acknowledgements ............................................................................................................................... vii Abstract ................................................................................................................................................ viii CHAPTER ONE - General Introduction .................................................................................................... 1 1.1 Marine urbanisation and invasion ................................................................................................ 2 1.2 Successful invasion and establishment of populations ................................................................ 4 1.3 Ascidians ....................................................................................................................................... 7 1.4 Native ascidians as study organisms ............................................................................................ -
Oikopleura Dioica: a Plankton Predator That
Flexibility of gene arangement in the genome of Oikopleura dioica Charles Plessy and the Luscombe Laboratory (group authorship). Okinawa Institute of Science and Technology Graduate University (OIST) 1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495 Oikopleura dioica in brief: - Japanese name: オタマボヤ Oikopleura dioica: a plankton predator that: - Oikopleura dioica is a globally distributed marine animal. It is evolutionarily closer to human than are lives in a house has a muscular tail, never sleeps and releases model organisms such as yeast, nematodes or fruit flies. As it belongs to the chordate phylum it has made with cellulose for flowing food to its mouth its gametes in only 5 days features common with vertebrate embryonic development, such as a dorsal nerve cord, or the formation of a muscular tail supported by a notochord. - Ecological importance: O. dioica is a small filter feeder that can account for up to 10 % of the total carbon mass in an area. It eats unicellular plankton and was reported to be able to ingest bacterial viruses and microplastics as well. Being an extremely efficient predator, it has an important role in the carbon chain, by producing organic matter (fecal pellet and "houses") that sediment to the sea floor. - Evolution: as it belongs to the tunicate phylum, it is among the invertebrates that are evolutionary closest to humans. Tunicates, like vertebrates are chordates: they have a muscular tail. They also have a brain, a heart, a gut, etc. - Compact genome: only 70 Mb. Nevertheless, it contains 18,020 predicted genes, which makes it an intersting model to study how to compactly encode functions homologous to some found in vertebrates. -
De Novo Draft Assembly of the Botrylloides Leachii Genome
bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 De novo draft assembly of the Botrylloides leachii genome 2 provides further insight into tunicate evolution. 3 4 Simon Blanchoud1#, Kim Rutherford2, Lisa Zondag1, Neil Gemmell2 and Megan J Wilson1* 5 6 1 Developmental Biology and Genomics Laboratory 7 2 8 Department of Anatomy, School of Biomedical Sciences, University of Otago, P.O. Box 56, 9 Dunedin 9054, New Zealand 10 # Current address: Department of Zoology, University of Fribourg, Switzerland 11 12 * Corresponding author: 13 Email: [email protected] 14 Ph. +64 3 4704695 15 Fax: +64 479 7254 16 17 Keywords: chordate, regeneration, Botrylloides leachii, ascidian, tunicate, genome, evolution 1 bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 18 Abstract (250 words) 19 Tunicates are marine invertebrates that compose the closest phylogenetic group to the 20 vertebrates. This chordate subphylum contains a particularly diverse range of reproductive 21 methods, regenerative abilities and life-history strategies. Consequently, tunicates provide an 22 extraordinary perspective into the emergence and diversity of chordate traits. Currently 23 published tunicate genomes include three Phlebobranchiae, one Thaliacean, one Larvacean 24 and one Stolidobranchian. To gain further insights into the evolution of the tunicate phylum, 25 we have sequenced the genome of the colonial Stolidobranchian Botrylloides leachii. -
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science Scientific Name: Botrylloides violaceus Phylum Chordata Common Name chain tunicate Class Ascidiacea Order Stolidobranchia Family Styelidae Z:\GAP\NPRB Marine Invasives\NPRB_DB\SppMaps\BOTVIO.png 80 Final Rank 56.25 Data Deficiency: 0.00 Category Scores and Data Deficiencies Total Data Deficient Category Score Possible Points Distribution and Habitat: 22 30 0 Anthropogenic Influence: 4.75 10 0 Biological Characteristics: 20.5 30 0 Impacts: 9 30 0 Figure 1. Occurrence records for non-native species, and their geographic proximity to the Bering Sea. Ecoregions are based on the classification system by Spalding et al. (2007). Totals: 56.25 100.00 0.00 Occurrence record data source(s): NEMESIS and NAS databases. General Biological Information Tolerances and Thresholds Minimum Temperature (°C) -1 Minimum Salinity (ppt) 20 Maximum Temperature (°C) 29 Maximum Salinity (ppt) 38 Minimum Reproductive Temperature (°C) 15 Minimum Reproductive Salinity (ppt) 26 Maximum Reproductive Temperature (°C) 25 Maximum Reproductive Salinity (ppt) 38 Additional Notes B. violaceus is a thinly encrusting, colonial tunicate. Colonies are uniformly colored, but can vary from purple, red, yellow, orange and brown. It species is native to the Northwest Pacific, but has been introduced on both coasts of North America, and parts of Atlantic Europe. It is a common fouling organism throughout much of its introduced range, where it often displaces and competes with other native and non-native fouling organisms, including tunicates, bryozoans, barnacles, and mussels. Reviewed by Linda Shaw, NOAA Fisheries Alaska Regional Office, Juneau AK Review Date: 8/31/2017 Report updated on Wednesday, December 06, 2017 Page 1 of 14 1. -
Cryptic Diversity and Database Errors Challenge Non-Indigenous Species Surveys: an Illustration with Botrylloides Spp
Cryptic Diversity and Database Errors Challenge Non-indigenous Species Surveys: An Illustration With Botrylloides spp. in the English Channel and Mediterranean Sea Frédérique Viard, Charlotte Roby, Xavier Turon, Sarah Bouchemousse, John Bishop To cite this version: Frédérique Viard, Charlotte Roby, Xavier Turon, Sarah Bouchemousse, John Bishop. Cryptic Diver- sity and Database Errors Challenge Non-indigenous Species Surveys: An Illustration With Botrylloides spp. in the English Channel and Mediterranean Sea. Frontiers in Marine Science, Frontiers Media, 2019, 6, pp.615. 10.3389/fmars.2019.00615. hal-02303799 HAL Id: hal-02303799 https://hal.sorbonne-universite.fr/hal-02303799 Submitted on 2 Oct 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fmars-06-00615 September 27, 2019 Time: 16:39 # 1 ORIGINAL RESEARCH published: 01 October 2019 doi: 10.3389/fmars.2019.00615 Cryptic Diversity and Database Errors Challenge Non-indigenous Species Surveys: An Illustration With Botrylloides spp. in the English Channel and Mediterranean Sea Frédérique Viard1*, -
Styela Clava (Tunicata, Ascidiacea) – a New Threat to the Mediterranean Shellfish Industry?
Aquatic Invasions (2009) Volume 4, Issue 1: 283-289 This is an Open Access article; doi: 10.3391/ai.2009.4.1.29 © 2009 The Author(s). Journal compilation © 2009 REABIC Special issue “Proceedings of the 2nd International Invasive Sea Squirt Conference” (October 2-4, 2007, Prince Edward Island, Canada) Andrea Locke and Mary Carman (Guest Editors) Short communication Styela clava (Tunicata, Ascidiacea) – a new threat to the Mediterranean shellfish industry? Martin H. Davis* and Mary E. Davis Fawley Biofouling Services, 45, Megson Drive, Lee-on-the-Solent, Hampshire, PO13 8BA, UK * Corresponding author E-mail: [email protected] Received 29 January 2008; accepted for special issue 17 April 2008; accepted in revised form 17 December 2008; published online 16 January 2009 Abstract The solitary ascidian Styela clava Herdman, 1882 has recently been found in the Bassin de Thau, France, an area of intensive oyster and mussel farming. The shellfish are grown on ropes suspended in the water column, similar to the technique employed in Prince Edward Island (PEI), Canada. S. clava is considered a major threat to the mussel industry in PEI but, at present, it is not considered a threat to oyster production in the Bassin de Thau. Anoxia or the combined effect of high water temperature and high salinity may be constraining the growth of the S. clava population in the Bassin de Thau. Identification of the factors restricting the population growth may provide clues to potential control methods. Key words: Styela clava, shellfish farming, Bassin de Thau Introduction Subsequent examination confirmed that the specimens were Styela clava Herdman, 1882 The solitary ascidian Styela clava is native to the (Davis and Davis 2008). -
This Article Was Originally Published in the Encyclopedia of Animal
This article was originally published in the Encyclopedia of Animal Behavior published by Elsevier, and the attached copy is provided by Elsevier for the author's benefit and for the benefit of the author's institution, for non- commercial research and educational use including without limitation use in instruction at your institution, sending it to specific colleagues who you know, and providing a copy to your institution’s administrator. All other uses, reproduction and distribution, including without limitation commercial reprints, selling or licensing copies or access, or posting on open internet sites, your personal or institution’s website or repository, are prohibited. For exceptions, permission may be sought for such use through Elsevier's permissions site at: http://www.elsevier.com/locate/permissionusematerial Grosberg R. and Plachetzki D. (2010) Marine Invertebrates: Genetics of Colony Recognition. In: Breed M.D. and Moore J., (eds.) Encyclopedia of Animal Behavior, volume 2, pp. 381-388 Oxford: Academic Press. © 2010 Elsevier Ltd. All rights reserved. Author's personal copy Marine Invertebrates: Genetics of Colony Recognition R. Grosberg and D. Plachetzki, University of California, Davis, CA, USA ã 2010 Elsevier Ltd. All rights reserved. Introduction with respect to the genetic identities of interactors; (2) genetically based recognition cues govern the expression Many sessile, encrusting clonal and colonial marine of these behaviors; and (3) the diversity of these cues is built animals – notably sponges, cnidarians, bryozoans, and on unusually high levels of genetic variation. colonial ascidians – exhibit a suite of life-history traits In this way, several features of invertebrate allorecogni- that promote intraspecific competition for space and the tion systems mirror several aspects of the major histocompat- evolution of complex behaviors that mediate the out- ibility complex (MHC), a key element of the vertebrate comes of somatic interactions. -
1 Phylogeny of the Families Pyuridae and Styelidae (Stolidobranchiata
* Manuscript 1 Phylogeny of the families Pyuridae and Styelidae (Stolidobranchiata, Ascidiacea) 2 inferred from mitochondrial and nuclear DNA sequences 3 4 Pérez-Portela Ra, b, Bishop JDDb, Davis ARc, Turon Xd 5 6 a Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 7 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 8 9 b Marine Biological Association of United Kingdom, The Laboratory Citadel Hill, PL1 10 2PB, Plymouth, UK, and School of Biological Sciences, University of Plymouth PL4 11 8AA, Plymouth, UK 12 13 c School of Biological Sciences, University of Wollongong, Wollongong NSW 2522 14 Australia 15 16 d Centre d’Estudis Avançats de Blanes (CSIC), Accés a la Cala St. Francesc 14, Blanes, 17 Girona, E-17300, Spain 18 19 Email addresses: 20 Bishop JDD: [email protected] 21 Davis AR: [email protected] 22 Turon X: [email protected] 23 24 Corresponding author: 25 Rocío Pérez-Portela 26 Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 27 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 28 Phone: + 351 21 8811226 29 Fax: + 351 21 8860954 30 [email protected] 31 1 32 Abstract 33 34 The Order Stolidobranchiata comprises the families Pyuridae, Styelidae and Molgulidae. 35 Early molecular data was consistent with monophyly of the Stolidobranchiata and also 36 the Molgulidae. Internal phylogeny and relationships between Styelidae and Pyuridae 37 were inconclusive however. In order to clarify these points we used mitochondrial and 38 nuclear sequences from 31 species of Styelidae and 25 of Pyuridae. Phylogenetic trees 39 recovered the Pyuridae as a monophyletic clade, and their genera appeared as 40 monophyletic with the exception of Pyura. -
Hemichordate Phylogeny: a Molecular, and Genomic Approach By
Hemichordate Phylogeny: A molecular, and genomic approach by Johanna Taylor Cannon A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 4, 2014 Keywords: phylogeny, evolution, Hemichordata, bioinformatics, invertebrates Copyright 2014 by Johanna Taylor Cannon Approved by Kenneth M. Halanych, Chair, Professor of Biological Sciences Jason Bond, Associate Professor of Biological Sciences Leslie Goertzen, Associate Professor of Biological Sciences Scott Santos, Associate Professor of Biological Sciences Abstract The phylogenetic relationships within Hemichordata are significant for understanding the evolution of the deuterostomes. Hemichordates possess several important morphological structures in common with chordates, and they have been fixtures in hypotheses on chordate origins for over 100 years. However, current evidence points to a sister relationship between echinoderms and hemichordates, indicating that these chordate-like features were likely present in the last common ancestor of these groups. Therefore, Hemichordata should be highly informative for studying deuterostome character evolution. Despite their importance for understanding the evolution of chordate-like morphological and developmental features, relationships within hemichordates have been poorly studied. At present, Hemichordata is divided into two classes, the solitary, free-living enteropneust worms, and the colonial, tube- dwelling Pterobranchia. The objective of this dissertation is to elucidate the evolutionary relationships of Hemichordata using multiple datasets. Chapter 1 provides an introduction to Hemichordata and outlines the objectives for the dissertation research. Chapter 2 presents a molecular phylogeny of hemichordates based on nuclear ribosomal 18S rDNA and two mitochondrial genes. In this chapter, we suggest that deep-sea family Saxipendiidae is nested within Harrimaniidae, and Torquaratoridae is affiliated with Ptychoderidae.