A Redescription of Syncarpa Composita (Ascidiacea, Stolidobranchia) with an Inference of Its Phylogenetic Position Within Styelidae
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Bacteria Associated with Tunicate, Polycarpa Aurata, from Lease Sea, Maluku, Indonesia Exhibiting Anti-Multidrug Resistant Bacteria
BIODIVERSITAS ISSN: 1412-033X Volume 20, Number 4, April 2019 E-ISSN: 2085-4722 Pages: 956-964 DOI: 10.13057/biodiv/d200404 Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria DIAH AYUNINGRUM1,5, RHESI KRISTIANA1, AYUNDA AINUN NISA2, SEPTHY KUSUMA RADJASA2, SAKTI IMAM MUCHLISSIN2,4, OCKY KARNA RADJASA2,3, AGUS SABDONO2, AGUS TRIANTO2, 1Department of Coastal Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia 2Department of Marine Science, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedarto, SH, Tembalang, Semarang 50275, Central Java, Indonesia. Tel.: +62-24-7474698, Fax.: +62-24-7474698, email: [email protected]. 3Directorate of Research and Community Services, Ministry of Research, Technology and Higher Education. D Building, Jl. Jenderal Sudirman Pintu Satu, Senayan, Jakarta Pusat 10279, Indonesia 4Tropical Marine Biotechnology Laboratory, Universitas Diponegoro Jl. Lingkar Utara Undip, Semarang 50275, Central Java, Indonesia 1Department of Aquatic Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia Manuscript received: 30 January 2019. Revision accepted: 10 March 2019. Abstract. Ayuningrum D, Kristiana R, Nisa AA, Radjasa SK, Muchlissin SI, Radjasa OK, Sabdono A, Trianto A. 2019. Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria. Biodiversitas 20: 956-964. Tunicate is a rich secondary metabolites producer with various biological activities whether as an original producer or produced by the associated microorganisms. In this study, a total of 11 tunicate specimens were identified as Polycarpa aurata with four color variations based on morphological characteristic and COI gene identification and BLAST analysis. -
Natural Products Diversity of Marine Ascidians (Tunicates; Ascidiacea) and Successful Drugs in Clinical Development
Nat. Prod. Bioprospect. DOI 10.1007/s13659-016-0115-5 REVIEW Natural Products Diversity of Marine Ascidians (Tunicates; Ascidiacea) and Successful Drugs in Clinical Development Satheesh Kumar Palanisamy . N. M. Rajendran . Angela Marino Received: 19 November 2016 / Accepted: 14 December 2016 Ó The Author(s) 2017. This article is published with open access at Springerlink.com Abstract This present study reviewed the chemical diversity of marine ascidians and their pharmacological applications, challenges and recent developments in marine drug discovery reported during 1994–2014, highlighting the structural activity of compounds produced by these specimens. Till date only 5% of living ascidian species were studied from\3000 species, this study represented from family didemnidae (32%), polyclinidae (22%), styelidae and polycitoridae (11–12%) exhibiting the highest number of promising MNPs. Close to 580 compound structures are here discussed in terms of their occurrence, structural type and reported biological activity. Anti-cancer drugs are the main area of interest in the screening of MNPs from ascidians (64%), followed by anti-malarial (6%) and remaining others. FDA approved ascidian compounds mechanism of action along with other compounds status of clinical trials (phase 1 to phase 3) are discussed here in. This review highlights recent developments in the area of natural products chemistry and biotechnological approaches are emphasized. Keywords Cancer Á Cytotoxicity Á Diversity Á Metabolites Á Pharmacology 1 Introduction from marine invertebrates, especially sponges, ascidians, bryozoans and molluscs in which some of them are The study of marine natural products (MNPs) is becoming approved by FDA and currently utilized in clinical trials ever more sophisticated and an increasingly collaborative [1]. -
Halocynthia Roretzi
Sekigami et al. Zoological Letters (2017) 3:17 DOI 10.1186/s40851-017-0078-3 RESEARCH ARTICLE Open Access Hox gene cluster of the ascidian, Halocynthia roretzi, reveals multiple ancient steps of cluster disintegration during ascidian evolution Yuka Sekigami1, Takuya Kobayashi1, Ai Omi1, Koki Nishitsuji2, Tetsuro Ikuta1, Asao Fujiyama3, Noriyuki Satoh2 and Hidetoshi Saiga1* Abstract Background: Hox gene clusters with at least 13 paralog group (PG) members are common in vertebrate genomes and in that of amphioxus. Ascidians, which belong to the subphylum Tunicata (Urochordata), are phylogenetically positioned between vertebrates and amphioxus, and traditionally divided into two groups: the Pleurogona and the Enterogona. An enterogonan ascidian, Ciona intestinalis (Ci), possesses nine Hox genes localized on two chromosomes; thus, the Hox gene cluster is disintegrated. We investigated the Hox gene cluster of a pleurogonan ascidian, Halocynthia roretzi (Hr) to investigate whether Hox gene cluster disintegration is common among ascidians, and if so, how such disintegration occurred during ascidian or tunicate evolution. Results: Our phylogenetic analysis reveals that the Hr Hox gene complement comprises nine members, including one with a relatively divergent Hox homeodomain sequence. Eight of nine Hr Hox genes were orthologous to Ci-Hox1, 2, 3, 4, 5, 10, 12 and 13. Following the phylogenetic classification into 13 PGs, we designated Hr Hox genes as Hox1, 2, 3, 4, 5, 10, 11/12/13.a, 11/12/13.b and HoxX. To address the chromosomal arrangement of the nine Hox genes, we performed two-color chromosomal fluorescent in situ hybridization, which revealed that the nine Hox genes are localized on a single chromosome in Hr, distinct from their arrangement in Ci. -
1471-2148-9-187.Pdf
BMC Evolutionary Biology BioMed Central Research article Open Access An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Georgia Tsagkogeorga1,2, Xavier Turon3, Russell R Hopcroft4, Marie- Ka Tilak1,2, Tamar Feldstein5, Noa Shenkar5,6, Yossi Loya5, Dorothée Huchon5, Emmanuel JP Douzery1,2 and Frédéric Delsuc*1,2 Address: 1Université Montpellier 2, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 2CNRS, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 3Centre d'Estudis Avançats de Blanes (CEAB, CSIC), Accés Cala S. Francesc 14, 17300 Blanes (Girona), Spain, 4Institute of Marine Science, University of Alaska Fairbanks, Fairbanks, Alaska, USA, 5Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, Israel and 6Department of Biology, University of Washington, Seattle WA 98195, USA Email: Georgia Tsagkogeorga - [email protected]; Xavier Turon - [email protected]; Russell R Hopcroft - [email protected]; Marie-Ka Tilak - [email protected]; Tamar Feldstein - [email protected]; Noa Shenkar - [email protected]; Yossi Loya - [email protected]; Dorothée Huchon - [email protected]; Emmanuel JP Douzery - [email protected]; Frédéric Delsuc* - [email protected] * Corresponding author Published: 5 August 2009 Received: 16 October 2008 Accepted: 5 August 2009 BMC Evolutionary Biology 2009, 9:187 doi:10.1186/1471-2148-9-187 This article is available from: http://www.biomedcentral.com/1471-2148/9/187 © 2009 Tsagkogeorga et al; licensee BioMed Central Ltd. -
De Novo Draft Assembly of the Botrylloides Leachii Genome
bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 De novo draft assembly of the Botrylloides leachii genome 2 provides further insight into tunicate evolution. 3 4 Simon Blanchoud1#, Kim Rutherford2, Lisa Zondag1, Neil Gemmell2 and Megan J Wilson1* 5 6 1 Developmental Biology and Genomics Laboratory 7 2 8 Department of Anatomy, School of Biomedical Sciences, University of Otago, P.O. Box 56, 9 Dunedin 9054, New Zealand 10 # Current address: Department of Zoology, University of Fribourg, Switzerland 11 12 * Corresponding author: 13 Email: [email protected] 14 Ph. +64 3 4704695 15 Fax: +64 479 7254 16 17 Keywords: chordate, regeneration, Botrylloides leachii, ascidian, tunicate, genome, evolution 1 bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 18 Abstract (250 words) 19 Tunicates are marine invertebrates that compose the closest phylogenetic group to the 20 vertebrates. This chordate subphylum contains a particularly diverse range of reproductive 21 methods, regenerative abilities and life-history strategies. Consequently, tunicates provide an 22 extraordinary perspective into the emergence and diversity of chordate traits. Currently 23 published tunicate genomes include three Phlebobranchiae, one Thaliacean, one Larvacean 24 and one Stolidobranchian. To gain further insights into the evolution of the tunicate phylum, 25 we have sequenced the genome of the colonial Stolidobranchian Botrylloides leachii. -
Marine Biology
Marine Biology Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. --Manuscript Draft-- Manuscript Number: MABI-D-16-00297 Full Title: Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. Article Type: S.I. : Invasive Species Keywords: ascidians, biofouling, biogeography, marine invasions, nonindigenous, non-native species, North America Corresponding Author: Christina Simkanin, Phd Smithsonian Environmental Research Center Edgewater, MD UNITED STATES Corresponding Author Secondary Information: Corresponding Author's Institution: Smithsonian Environmental Research Center Corresponding Author's Secondary Institution: First Author: Christina Simkanin, Phd First Author Secondary Information: Order of Authors: Christina Simkanin, Phd Paul W. Fofonoff Kristen Larson Gretchen Lambert Jennifer Dijkstra Gregory M. Ruiz Order of Authors Secondary Information: Funding Information: California Department of Fish and Wildlife Dr. Gregory M. Ruiz National Sea Grant Program Dr. Gregory M. Ruiz Prince William Sound Regional Citizens' Dr. Gregory M. Ruiz Advisory Council Smithsonian Institution Dr. Gregory M. Ruiz United States Coast Guard Dr. Gregory M. Ruiz United States Department of Defense Dr. Gregory M. Ruiz Legacy Program Abstract: SSpecies introductions have increased dramatically in number, rate, and magnitude of impact in recent decades. In marine systems, invertebrates are the largest and most diverse component of coastal invasions throughout the world. Ascidians are conspicuous and well-studied members of this group, however, much of what is known about their invasion history is limited to particular species or locations. Here, we provide a large-scale assessment of invasions, using an extensive literature review and standardized field surveys, to characterize the invasion dynamics of non-native ascidians in the continental United States and Alaska. -
Ascidiacea (Chordata: Tunicata) of Greece: an Updated Checklist
Biodiversity Data Journal 4: e9273 doi: 10.3897/BDJ.4.e9273 Taxonomic Paper Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist Chryssanthi Antoniadou‡, Vasilis Gerovasileiou§§, Nicolas Bailly ‡ Department of Zoology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Greece § Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Greece Corresponding author: Chryssanthi Antoniadou ([email protected]) Academic editor: Christos Arvanitidis Received: 18 May 2016 | Accepted: 17 Jul 2016 | Published: 01 Nov 2016 Citation: Antoniadou C, Gerovasileiou V, Bailly N (2016) Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist. Biodiversity Data Journal 4: e9273. https://doi.org/10.3897/BDJ.4.e9273 Abstract Background The checklist of the ascidian fauna (Tunicata: Ascidiacea) of Greece was compiled within the framework of the Greek Taxon Information System (GTIS), an application of the LifeWatchGreece Research Infrastructure (ESFRI) aiming to produce a complete checklist of species recorded from Greece. This checklist was constructed by updating an existing one with the inclusion of recently published records. All the reported species from Greek waters were taxonomically revised and cross-checked with the Ascidiacea World Database. New information The updated checklist of the class Ascidiacea of Greece comprises 75 species, classified in 33 genera, 12 families, and 3 orders. In total, 8 species have been added to the previous species list (4 Aplousobranchia, 2 Phlebobranchia, and 2 Stolidobranchia). Aplousobranchia was the most speciose order, followed by Stolidobranchia. Most species belonged to the families Didemnidae, Polyclinidae, Pyuridae, Ascidiidae, and Styelidae; these 4 families comprise 76% of the Greek ascidian species richness. The present effort revealed the limited taxonomic research effort devoted to the ascidian fauna of Greece, © Antoniadou C et al. -
Marine Information Network Information on the Species and Habitats Around the Coasts and Sea of the British Isles
MarLIN Marine Information Network Information on the species and habitats around the coasts and sea of the British Isles Sponges, shade-tolerant red seaweeds and Dendrodoa grossularia on wave-surged overhanging lower eulittoral bedrock and caves MarLIN – Marine Life Information Network Marine Evidence–based Sensitivity Assessment (MarESA) Review John Readman 2020-01-24 A report from: The Marine Life Information Network, Marine Biological Association of the United Kingdom. Please note. This MarESA report is a dated version of the online review. Please refer to the website for the most up-to-date version [https://www.marlin.ac.uk/habitats/detail/1203]. All terms and the MarESA methodology are outlined on the website (https://www.marlin.ac.uk) This review can be cited as: Readman, J.A.J., 2020. Sponges, shade-tolerant red seaweeds and [Dendrodoa grossularia] on wave- surged overhanging lower eulittoral bedrock and caves. In Tyler-Walters H. and Hiscock K. (eds) Marine Life Information Network: Biology and Sensitivity Key Information Reviews, [on-line]. Plymouth: Marine Biological Association of the United Kingdom. DOI https://dx.doi.org/10.17031/marlinhab.1203.1 The information (TEXT ONLY) provided by the Marine Life Information Network (MarLIN) is licensed under a Creative Commons Attribution-Non-Commercial-Share Alike 2.0 UK: England & Wales License. Note that images and other media featured on this page are each governed by their own terms and conditions and they may or may not be available for reuse. Permissions beyond the scope of this -
Phylum Chordata Bateson, 1885
Checklist of the Invertebrate Chordata and the Hemichordata of British Columbia (Tunicates and Acorn Worms) (August, 2009) by Aaron Baldwin, PhD Candidate School of Fisheries and Ocean Science University of Alaska, Fairbanks E-mail [email protected] The following checklist contains species in the chordate subphylum Tunicata and the acorn worms which have been listed as found in British Columbia. This list is certainly incomplete. The taxonomy follows that of the World Register of Marine Species (WoRMS database, www.marinespecies.org) and the Integrated Taxonomic Information System (ITIS, www.itis.gov). For several families and higher taxa I was unable to locate author's names so have left these blank. Common names are mainly from Lamb and Hanby (2005). Phylum Chordata Bateson, 1885 Subpylum Tunicata Class Ascidacea Nielsen, 1995 Order Entergona Suborder Aplousobranchia Family Cionidae Genus Ciona Fleming, 1822 Ciona savignyi Herdman, 1882 Family Clavelinidae Genus Clavelina Savigny, 1816 Clavelina huntsmani Van Name, 1931 Family Didemnidae Genus Didemnum Savigny, 1816 Didemnum carnulentum Ritter and Forsyth, 1917 Didenmum sp (Lamb and Hanby, 2005) INV Genus Diplosoma Macdonald, 1859 Diplosoma listerianum (Milne-Edwards, 1841) Genus Trididemnum delle Valle, 1881 Trididemnum alexi Lambert, 2005 Family Holozoidae Genus Distaplia delle Valle, 1881 Distaplia occidentalis Bancroft, 1899 Distaplia smithi Abbot and Trason, 1968 Family Polycitoridae Genus Cystodytes von Drasche, 1884 Cystodytes lobatus (Ritter, 1900) Genus Eudistoma Caullery, 1909 -
Ascidians from Bocas Del Toro, Panama. I. Biodiversity
Caribbean Journal of Science, Vol. 41, No. 3, 600-612, 2005 Copyright 2005 College of Arts and Sciences University of Puerto Rico, Mayagu¨ez Ascidians from Bocas del Toro, Panama. I. Biodiversity. ROSANA M. ROCHA*, SUZANA B. FARIA AND TATIANE R. MORENO Universidade Federal do Paraná, Departamento de Zoologia, CP 19020, 81.531-980, Curitiba, Paraná, Brazil Corresponding author: *[email protected] ABSTRACT.—An intensive survey of ascidian species was carried out in August 2003, in different environ- ments of the Bocas del Toro region, northwestern Panama. Most samples are from shallow waters (< 3 m) in coral reefs, among mangrove roots and in Thallasia testudines banks. Of the 58 species found, 14 are new species. Of the 26 sampling sites, the most diverse were Crawl Key Canal (9°15.050’N, 82°07.631’W), Solarte ,Island (9°17.929’N, 82°11.672’W), Wild Cane Key (9° 2040N, 82°1020W), Isla Pastores (9°14.332’N W), the bay behind the STRI Lab (9°214.3 N, 82°15’25.6 W), and the entrance of Bocatorito Bay’82°19.968 (9°13.375’N, 82°12.555’W). Ascidians have been studied and reported from 31 locations within the Caribbean, and 139 species have been reported. This count will increase with the description of the 14 new species, and Bocas del Toro may be considered a region of high ascidian diversity since > 40% of the total known Caribbean ascidian fauna occurs there. KEYWORDS.—Ascidian taxonomy, Caribbean, checklist INTRODUCTION found and discuss the relationship of this fauna with that of other Caribbean loca- tions. -
New Cytotoxic Natural Products from Marine Invertebrates
New cytotoxic natural products from marine invertebrates (Neue zytotoxische Naturstoffe aus marinen Invertebraten) Inaugural-Dissertation zur Erlangung des Doktorgrades der Mathematisch-Naturwissenschaftlichen Fakultät der Heinrich-Heine-Universität Düsseldorf vorgelegt von Cong-Dat Pham Aus Tönisvorst, Bundesrepublik Deutschland Düsseldorf, 03.02.2014 Aus dem Institut für Pharmazeutische Biologie und Biotechnologie der Heinrich-Heine Universität Düsseldorf Gedruckt mit der Genehmigung der Mathematisch-Naturwissenschaftlichen Fakultät der Heinrich-Heine-Universität Düsseldorf Gedruckt mit der Unterstützung des BMBF Referent: Prof. Dr. Peter Proksch Koreferent: Prof. Dr. Matthias U. Kassack Tag der mündlichen Prüfung: _______________ „Ich habe keine besondere Begabung, sondern bin nur leidenschaftlich neugierig.“ Albert Einstein CONTENTS 1. ABSTRACT 6 2. ZUSAMMENFASSUNG 9 3. INTRODUCTION 12 3.1 Significance of the study 12 3.2 Marine invertebrates 12 3.2.1 Sponges 13 3.2.2 Ascidians 15 3.2.3 Microbial communities in marine invertebrates 17 3.3 Marine natural products and their biological activities 18 3.3.1 Angiogenesis 20 3.3.2 Apoptosis 20 3.3.3 Mitosis 21 3.3.4 Topoisomerases and DNA polymerases 23 3.4 Current marine derived drugs in pre-clinical and clinical trials 23 3.5 Aim of the study 25 4. PUBLICATION 1: AAPTOS SUBERITOIDES 26 5. PUBLICATION 2: POLYCARPA AURATA 55 6. PUBLICATION 3: CALLYSPONGIA SP. 77 7. DISCUSSION 118 7.1. Isolated natural products from Aaptos suberitoides 118 7.1.1 Benzo[de][1,6]-naphthyridine alkaloids 118 7.2. Isolated natural products from Polycarpa aurata 121 7.2.1 Sulfur containing guanidine alkaloids 121 7.2.2 -carboline alkaloids 124 7.3. -
1 Phylogeny of the Families Pyuridae and Styelidae (Stolidobranchiata
* Manuscript 1 Phylogeny of the families Pyuridae and Styelidae (Stolidobranchiata, Ascidiacea) 2 inferred from mitochondrial and nuclear DNA sequences 3 4 Pérez-Portela Ra, b, Bishop JDDb, Davis ARc, Turon Xd 5 6 a Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 7 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 8 9 b Marine Biological Association of United Kingdom, The Laboratory Citadel Hill, PL1 10 2PB, Plymouth, UK, and School of Biological Sciences, University of Plymouth PL4 11 8AA, Plymouth, UK 12 13 c School of Biological Sciences, University of Wollongong, Wollongong NSW 2522 14 Australia 15 16 d Centre d’Estudis Avançats de Blanes (CSIC), Accés a la Cala St. Francesc 14, Blanes, 17 Girona, E-17300, Spain 18 19 Email addresses: 20 Bishop JDD: [email protected] 21 Davis AR: [email protected] 22 Turon X: [email protected] 23 24 Corresponding author: 25 Rocío Pérez-Portela 26 Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 27 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 28 Phone: + 351 21 8811226 29 Fax: + 351 21 8860954 30 [email protected] 31 1 32 Abstract 33 34 The Order Stolidobranchiata comprises the families Pyuridae, Styelidae and Molgulidae. 35 Early molecular data was consistent with monophyly of the Stolidobranchiata and also 36 the Molgulidae. Internal phylogeny and relationships between Styelidae and Pyuridae 37 were inconclusive however. In order to clarify these points we used mitochondrial and 38 nuclear sequences from 31 species of Styelidae and 25 of Pyuridae. Phylogenetic trees 39 recovered the Pyuridae as a monophyletic clade, and their genera appeared as 40 monophyletic with the exception of Pyura.