Cellular and Molecular Mechanisms of Regeneration in Colonial and Solitary MARK Ascidians ⁎ Susannah H
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Life-History Strategies of a Native Marine Invertebrate Increasingly Exposed to Urbanisation and Invasion
Temporal Currency: Life-history strategies of a native marine invertebrate increasingly exposed to urbanisation and invasion A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science in Zoology University of Canterbury New Zealand Jason Suwandy 2012 Contents List of Figures ......................................................................................................................................... iii List of Tables .......................................................................................................................................... vi Acknowledgements ............................................................................................................................... vii Abstract ................................................................................................................................................ viii CHAPTER ONE - General Introduction .................................................................................................... 1 1.1 Marine urbanisation and invasion ................................................................................................ 2 1.2 Successful invasion and establishment of populations ................................................................ 4 1.3 Ascidians ....................................................................................................................................... 7 1.4 Native ascidians as study organisms ............................................................................................ -
De Novo Draft Assembly of the Botrylloides Leachii Genome
bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 De novo draft assembly of the Botrylloides leachii genome 2 provides further insight into tunicate evolution. 3 4 Simon Blanchoud1#, Kim Rutherford2, Lisa Zondag1, Neil Gemmell2 and Megan J Wilson1* 5 6 1 Developmental Biology and Genomics Laboratory 7 2 8 Department of Anatomy, School of Biomedical Sciences, University of Otago, P.O. Box 56, 9 Dunedin 9054, New Zealand 10 # Current address: Department of Zoology, University of Fribourg, Switzerland 11 12 * Corresponding author: 13 Email: [email protected] 14 Ph. +64 3 4704695 15 Fax: +64 479 7254 16 17 Keywords: chordate, regeneration, Botrylloides leachii, ascidian, tunicate, genome, evolution 1 bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 18 Abstract (250 words) 19 Tunicates are marine invertebrates that compose the closest phylogenetic group to the 20 vertebrates. This chordate subphylum contains a particularly diverse range of reproductive 21 methods, regenerative abilities and life-history strategies. Consequently, tunicates provide an 22 extraordinary perspective into the emergence and diversity of chordate traits. Currently 23 published tunicate genomes include three Phlebobranchiae, one Thaliacean, one Larvacean 24 and one Stolidobranchian. To gain further insights into the evolution of the tunicate phylum, 25 we have sequenced the genome of the colonial Stolidobranchian Botrylloides leachii. -
Marine Biology
Marine Biology Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. --Manuscript Draft-- Manuscript Number: MABI-D-16-00297 Full Title: Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. Article Type: S.I. : Invasive Species Keywords: ascidians, biofouling, biogeography, marine invasions, nonindigenous, non-native species, North America Corresponding Author: Christina Simkanin, Phd Smithsonian Environmental Research Center Edgewater, MD UNITED STATES Corresponding Author Secondary Information: Corresponding Author's Institution: Smithsonian Environmental Research Center Corresponding Author's Secondary Institution: First Author: Christina Simkanin, Phd First Author Secondary Information: Order of Authors: Christina Simkanin, Phd Paul W. Fofonoff Kristen Larson Gretchen Lambert Jennifer Dijkstra Gregory M. Ruiz Order of Authors Secondary Information: Funding Information: California Department of Fish and Wildlife Dr. Gregory M. Ruiz National Sea Grant Program Dr. Gregory M. Ruiz Prince William Sound Regional Citizens' Dr. Gregory M. Ruiz Advisory Council Smithsonian Institution Dr. Gregory M. Ruiz United States Coast Guard Dr. Gregory M. Ruiz United States Department of Defense Dr. Gregory M. Ruiz Legacy Program Abstract: SSpecies introductions have increased dramatically in number, rate, and magnitude of impact in recent decades. In marine systems, invertebrates are the largest and most diverse component of coastal invasions throughout the world. Ascidians are conspicuous and well-studied members of this group, however, much of what is known about their invasion history is limited to particular species or locations. Here, we provide a large-scale assessment of invasions, using an extensive literature review and standardized field surveys, to characterize the invasion dynamics of non-native ascidians in the continental United States and Alaska. -
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science Scientific Name: Botrylloides violaceus Phylum Chordata Common Name chain tunicate Class Ascidiacea Order Stolidobranchia Family Styelidae Z:\GAP\NPRB Marine Invasives\NPRB_DB\SppMaps\BOTVIO.png 80 Final Rank 56.25 Data Deficiency: 0.00 Category Scores and Data Deficiencies Total Data Deficient Category Score Possible Points Distribution and Habitat: 22 30 0 Anthropogenic Influence: 4.75 10 0 Biological Characteristics: 20.5 30 0 Impacts: 9 30 0 Figure 1. Occurrence records for non-native species, and their geographic proximity to the Bering Sea. Ecoregions are based on the classification system by Spalding et al. (2007). Totals: 56.25 100.00 0.00 Occurrence record data source(s): NEMESIS and NAS databases. General Biological Information Tolerances and Thresholds Minimum Temperature (°C) -1 Minimum Salinity (ppt) 20 Maximum Temperature (°C) 29 Maximum Salinity (ppt) 38 Minimum Reproductive Temperature (°C) 15 Minimum Reproductive Salinity (ppt) 26 Maximum Reproductive Temperature (°C) 25 Maximum Reproductive Salinity (ppt) 38 Additional Notes B. violaceus is a thinly encrusting, colonial tunicate. Colonies are uniformly colored, but can vary from purple, red, yellow, orange and brown. It species is native to the Northwest Pacific, but has been introduced on both coasts of North America, and parts of Atlantic Europe. It is a common fouling organism throughout much of its introduced range, where it often displaces and competes with other native and non-native fouling organisms, including tunicates, bryozoans, barnacles, and mussels. Reviewed by Linda Shaw, NOAA Fisheries Alaska Regional Office, Juneau AK Review Date: 8/31/2017 Report updated on Wednesday, December 06, 2017 Page 1 of 14 1. -
Violet Tunicate Botrylloides Violaceus
violet tunicate Botrylloides violaceus Synonyms: Botrylloides aurantius, Botrylloides aurantium, Botrylloides carnosum, Other common names: chain tunicate, lined colonial tunicate, orange sheath tunicate, ascidian Family: Styelidae AphiaID. 148715 Description (Curran & Chan, 2013) Ecological impact B. violaceus is a marine colonial tunicate with Impact on community composition, structure, and rapid growth and mat-forming capabilities that interactions: B. violaceus colonies can displace colonizes and dominates artificial and natural other fouling organisms through competition for hard substrata. They form flat sheets and resources, which can result the marked decrease occasionally lobate structures. A colony consists in select species, or biodiversity as a whole of a number of teardrop-shaped zooids, (Myers 1990, Osman & Whitlatch, 1995; Bullard connected by a common tunic, that are arranged et al. 2004; Dijkstra and Harris 2009). in elongated clusters. Zooids have 10-11 rows of Impact on ecosystem processes: stigmata and 9-12 stomach folds. Each zooid is a Reduced biodiversity and limited species access single color, and all the zooids within a colony to resources can limit ecosystem productivity and are the same color, usually orange, yellow, red, lessen ecosystem resilience to disturbance. purple or tan, and occasionally brown or Economic Impact: D. vexillum poses a nuisance lavender. The matrix is usually clear, though in to aquaculture activities and is expected to have some older colonies it can be the same color as substantial impacts on the shipping and fisheries the zooids. Blood vessels can be seen extending industry (Gittenberger, 2009; Carman et al., through the matrix with pigmented blobs at their 2010; Bullard et al. 2015) terminus. -
Iceland: a Laboratory for Non-Indigenous Ascidians
BioInvasions Records (2020) Volume 9, Issue 3: 450–460 CORRECTED PROOF Research Article Iceland: a laboratory for non-indigenous ascidians Alfonso A. Ramos-Esplá1,*, Joana Micael2, Halldór P. Halldórsson3 and Sindri Gíslason2 1Research Marine Centre of Santa Pola (CIMAR), University of Alicante, 03080 Alicante, Spain 2Southwest Iceland Nature Research Centre (SINRC), 245 Suðurnesjabær, Iceland 3University of Iceland, Sudurnes Research Center, 245 Suðurnesjabær, Iceland *Corresponding author E-mail: [email protected] Citation: Ramos-Esplá AA, Micael J, Halldórsson HP, Gíslason S (2020) Abstract Iceland: a laboratory for non-indigenous ascidians. BioInvasions Records 9(3): 450– Non-indigenous species (NIS) represent a serious problem worldwide, where ascidians 460, https://doi.org/10.3391/bir.2020.9.3.01 are one of the most important taxa. However, little has been done to document the non-indigenous ascidians in Iceland, and over the past decade only two species had Received: 30 October 2019 been recorded prior to the present study, Ciona intestinalis in 2007 and Botryllus Accepted: 19 March 2020 schlosseri in 2011. To increase the knowledge of this taxon, extensive sampling Published: 7 May 2020 was carried out in shallow waters around Iceland, during the summer 2018, in ports Handling editor: Noa Shenkar and on ropes of a long-line mussel aquaculture. In total, eleven species were identified, Thematic editor: Stelios Katsanevakis four native and seven NIS, of which Diplosoma listerianum, Ascidiella aspersa, Copyright: © Ramos-Esplá et al. Botrylloides violaceus, Molgula manhattensis and Ciona cf. robusta, are now reported This is an open access article distributed under terms for the first time in Iceland. -
Awesome Ascidians a Guide to the Sea Squirts of New Zealand Version 2, 2016
about this guide | about sea squirts | colour index | species index | species pages | icons | glossary inspirational invertebratesawesome ascidians a guide to the sea squirts of New Zealand Version 2, 2016 Mike Page Michelle Kelly with Blayne Herr 1 about this guide | about sea squirts | colour index | species index | species pages | icons | glossary about this guide Sea squirts are amongst the more common marine invertebrates that inhabit our coasts, our harbours, and the depths of our oceans. AWESOME ASCIDIANS is a fully illustrated e-guide to the sea squirts of New Zealand. It is designed for New Zealanders like you who live near the sea, dive and snorkel, explore our coasts, make a living from it, and for those who educate and are charged with kaitiakitanga, conservation and management of our marine realm. It is one in a series of electronic guides on New Zealand marine invertebrates that NIWA’s Coasts and Oceans centre is presently developing. The e-guide starts with a simple introduction to living sea squirts, followed by a colour index, species index, detailed individual species pages, and finally, icon explanations and a glossary of terms. As new species are discovered and described, new species pages will be added and an updated version of this e-guide will be made available online. Each sea squirt species page illustrates and describes features that enable you to differentiate the species from each other. Species are illustrated with high quality images of the animals in life. As far as possible, we have used characters that can be seen by eye or magnifying glass, and language that is non technical. -
On a Collection of Ascidians from the Southern West Coast of India with Three New Records from Indian Waters
Available online at: www.mbai.org.in doi: 10.6024/jmbai.2015.57.1.01834A-09 On a collection of ascidians from the southern west coast of India with three new records from Indian waters H. Abdul Jaffar Ali*, V. Sivakumar1, M. Tamilselvi2, A. Soban Akram and M. L. Kaleem Arshan Department of Biotechnology, Islamiah College (Autonomous), Vaniyambadi - 635 752, India. 1 Director of Research and Conservation, 4e India NGO (Reg 188/2010). 2Department of Zoology, V.V. Vanniaperumal College for Women, Virudhunagar - 626 001, India. *Correspondence e-mail: [email protected] Received: 30 Dec 2014, Accepted: 09 Apr 2015, Published: 30 Apr 2015 Original Article Abstract Keywords: Ascidian, distribution, diversity, India, southwest Diversity and distribution of 42 species of ascidians belonging to coast, tunicate, new records. 7 families and 19 genera from six different stations along the southwest coast of India were documented. Most of the species were recorded for the first time from the southwest coast of India while three species appear to be new records from India. Previous records of these species in India were usually from Gulf Introduction of Mannar particularly in Thoothukudi water. The family Didemnidae was represented by 13 species of 4 genera followed The Class Ascidiacea of sub-phylum Tunicata constitutes a by Styelidae (11 species of 7 genera), Polyclinidae (7 species of unique group of animals that serve as an essential source 2 genera), Pyuridae (6 species of 2 genera), Perophoridae (two of a variety of studies in fields ranging from development species) and Polycitoridae and Ascidiidae (one species each). The and evolution to immunology and biotechnology. -
S41598-018-23749-W.Pdf
www.nature.com/scientificreports OPEN De novo draft assembly of the Botrylloides leachii genome provides further insight into Received: 6 September 2017 Accepted: 20 March 2018 tunicate evolution Published: xx xx xxxx Simon Blanchoud1,2, Kim Rutherford 1, Lisa Zondag1, Neil J. Gemmell 1 & Megan J. Wilson1 Tunicates are marine invertebrates that compose the closest phylogenetic group to the vertebrates. These chordates present a particularly diverse range of regenerative abilities and life-history strategies. Consequently, tunicates provide an extraordinary perspective into the emergence and diversity of these traits. Here we describe the genome sequencing, annotation and analysis of the Stolidobranchian Botrylloides leachii. We have produced a high-quality 159 Mb assembly, 82% of the predicted 194 Mb genome. Analysing genome size, gene number, repetitive elements, orthologs clustering and gene ontology terms show that B. leachii has a genomic architecture similar to that of most solitary tunicates, while other recently sequenced colonial ascidians have undergone genome expansion. In addition, ortholog clustering has identifed groups of candidate genes for the study of colonialism and whole-body regeneration. By analysing the structure and composition of conserved gene linkages, we observed examples of cluster breaks and gene dispersions, suggesting that several lineage-specifc genome rearrangements occurred during tunicate evolution. We also found lineage-specifc gene gain and loss within conserved cell-signalling pathways. Such examples of genetic changes within conserved cell-signalling pathways commonly associated with regeneration and development that may underlie some of the diverse regenerative abilities observed in tunicates. Overall, these results provide a novel resource for the study of tunicates and of colonial ascidians. -
Marine Natural Products from Tunicates and Their Associated Microbes
marine drugs Review Marine Natural Products from Tunicates and Their Associated Microbes Chatragadda Ramesh 1,2,*, Bhushan Rao Tulasi 3, Mohanraju Raju 2, Narsinh Thakur 4 and Laurent Dufossé 5,* 1 Biological Oceanography Division (BOD), CSIR-National Institute of Oceanography (CSIR-NIO), Dona Paula 403004, India 2 Department of Ocean Studies and Marine Biology, Pondicherry Central University, Brookshabad Campus, Port Blair 744102, India; [email protected] 3 Zoology Division, Sri Gurajada Appa Rao Government Degree College, Yellamanchili 531055, India; [email protected] 4 Chemical Oceanography Division (COD), CSIR-National Institute of Oceanography (CSIR-NIO), Dona Paula 403004, India; [email protected] 5 Laboratoire de Chimie et Biotechnologie des Produits Naturels (CHEMBIOPRO), Université de La Réunion, ESIROI Agroalimentaire, 15 Avenue René Cassin, CS 92003, CEDEX 9, F-97744 Saint-Denis, Ile de La Réunion, France * Correspondence: [email protected] (C.R.); [email protected] (L.D.); Tel.: +91-(0)-832-2450636 (C.R.); +33-668-731-906 (L.D.) Abstract: Marine tunicates are identified as a potential source of marine natural products (MNPs), demonstrating a wide range of biological properties, like antimicrobial and anticancer activities. The symbiotic relationship between tunicates and specific microbial groups has revealed the acquisi- tion of microbial compounds by tunicates for defensive purpose. For instance, yellow pigmented compounds, “tambjamines”, produced by the tunicate, Sigillina signifera (Sluiter, 1909), primarily Citation: Ramesh, C.; Tulasi, B.R.; originated from their bacterial symbionts, which are involved in their chemical defense function, indi- Raju, M.; Thakur, N.; Dufossé, L. cating the ecological role of symbiotic microbial association with tunicates. This review has garnered Marine Natural Products from comprehensive literature on MNPs produced by tunicates and their symbiotic microbionts. -
BMC Evolutionary Biology
BMC Evolutionary Biology This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models BMC Evolutionary Biology 2009, 9:187 doi:10.1186/1471-2148-9-187 Georgia Tsagkogeorga ([email protected]) Xavier Turon ([email protected]) Russell R Hopcroft ([email protected]) Marie-Ka Tilak ([email protected]) Tamar Feldstein ([email protected]) Noa Shenkar ([email protected]) Yossi Loya ([email protected]) Dorothee Huchon ([email protected]) Emmanuel JP Douzery ([email protected]) Frederic Delsuc ([email protected]) ISSN 1471-2148 Article type Research article Submission date 16 October 2008 Acceptance date 5 August 2009 Publication date 5 August 2009 Article URL http://www.biomedcentral.com/1471-2148/9/187 Like all articles in BMC journals, this peer-reviewed article was published immediately upon acceptance. It can be downloaded, printed and distributed freely for any purposes (see copyright notice below). Articles in BMC journals are listed in PubMed and archived at PubMed Central. For information about publishing your research in BMC journals or any BioMed Central journal, go to http://www.biomedcentral.com/info/authors/ © 2009 Tsagkogeorga et al. , licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. -
Botryllid Tunicates: Culture Techniques and Experimental Procedures
Aquatic Invasions (2009) Volume 4, Issue 1: 111-120 This is an Open Access article; doi: 10.3391/ai. 2009.4.1.12 © 2009 The Author(s). Journal compilation © 2009 REABIC Special issue “Proceedings of the 2nd International Invasive Sea Squirt Conference” (October 2-4, 2007, Prince Edward Island, Canada) Andrea Locke and Mary Carman (Guest Editors) Research article Botryllid tunicates: Culture techniques and experimental procedures Anya Epelbaum1*, Thomas W. Therriault1, Amber Paulson2 and Christopher M. Pearce1,2 1Fisheries and Oceans Canada, Pacific Biological Station, 3190 Hammond Bay Road, Nanaimo, British Columbia, V9T 6N7 Canada 2Vancouver Island University, Department of Fisheries&Aquaculture, 900 Fifth Street, Nanaimo, British Columbia, V9R 5S5 Canada * Corresponding author E-mail: [email protected] Received 14 January 2008; accepted for special issue 19 April 2008; accepted in revised form 15 December 2008; published online 16 January 2009 Abstract Botryllid tunicates have become increasingly important as model experimental organisms in a variety of biological and ecological fields, including invasion ecology. This paper summarizes existing botryllid culture methods and offers new ones for culturing Botryllus schlosseri (golden star tunicate) and Botrylloides violaceus (violet tunicate) under laboratory conditions. Techniques for maintaining adult colonies, obtaining larvae, and establishing juvenile cultures are presented. Considerations for designing laboratory experiments using botryllid tunicates are discussed. Key words: Botrylloides, Botryllus, culture techniques, golden star tunicate, violet tunicate Introduction seasonal variations in colony availability, growth rate, and sexual reproduction, and makes it Botryllid tunicates have become increasingly possible to conduct long-term experiments year important as model experimental organisms in a round.