Iceland: a Laboratory for Non-Indigenous Ascidians
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Colonial Tunicates: Species Guide
SPECIES IN DEPTH Colonial Tunicates Colonial Tunicates Tunicates are small marine filter feeder animals that have an inhalant siphon, which takes in water, and an exhalant siphon that expels water once it has trapped food particles. Tunicates get their name from the tough, nonliving tunic formed from a cellulose-like material of carbohydrates and proteins that surrounds their bodies. Their other name, sea squirts, comes from the fact that many species will shoot LambertGretchen water out of their bodies when disturbed. Massively lobate colony of Didemnum sp. A growing on a rope in Sausalito, in San Francisco Bay. A colony of tunicates is comprised of many tiny sea squirts called zooids. These INVASIVE SEA SQUIRTS individuals are arranged in groups called systems, which form interconnected Star sea squirts (Botryllus schlosseri) are so named because colonies. Systems of these filter feeders the systems arrange themselves in a star. Zooids are shaped share a common area for expelling water like ovals or teardrops and then group together in small instead of having individual excurrent circles of about 20 individuals. This species occurs in a wide siphons. Individuals and systems are all variety of colors: orange, yellow, red, white, purple, grayish encased in a matrix that is often clear and green, or black. The larvae each have eight papillae, or fleshy full of blood vessels. All ascidian tunicates projections that help them attach to a substrate. have a tadpole-like larva that swims for Chain sea squirts (Botryloides violaceus) have elongated, less than a day before attaching itself to circular systems. Each system can have dozens of zooids. -
Settlement Patterns in Ascidians Concerning Have Been
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Digital.CSIC Larval settlement behaviour in six gregarious ascidians in relation to adult 2 distribution 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 Marc Rius1,2,*, George M. Branch2, Charles L. Griffiths1,2, Xavier Turon3 18 19 20 1 Centre for Invasion Biology, Zoology Department, University of Cape Town, 21 Rondebosch 7701, South Africa 22 23 2 Marine Biology Research Centre, Zoology Department, University of Cape Town, 24 Rondebosch 7701, South Africa 25 26 3 Center for Advanced Studies of Blanes (CEAB, CSIC), Accés Cala St. Francesc 14, 27 17300 Blanes (Girona), Spain 28 29 30 31 32 33 34 * Corresponding author: Marc Rius 35 Centre for Invasion Biology, Zoology Department, University of Cape Town, 36 Rondebosch 7701, South Africa 37 E-mail: [email protected] 38 Telephone: +27 21 650 4939 39 Fax: +27 21 650 3301 40 41 Running head: Settlement patterns of gregarious ascidians 42 43 44 1 45 ABSTRACT 46 Settlement influences the distribution and abundance of many marine organisms, 47 although the relative roles of abiotic and biotic factors influencing settlement are poorly 48 understood. Species that aggregate often owe this to larval behaviour, and we ask 49 whether this predisposes ascidians to becoming invasive, by increasing their capacity to 50 maintain their populations. We explored the interactive effects of larval phototaxis and 51 geotaxis and conspecific adult extracts on settlement rates of a representative suite of 52 six species of ascidians that form aggregations in the field, including four aliens with 53 global distributions, and how they relate to adult habitat characteristics. -
Ciona Intestinalis and Comparative Analysis with Ciona Savignyi
Downloaded from genome.cshlp.org on September 24, 2021 - Published by Cold Spring Harbor Laboratory Press Methods Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi Jong Hyun Kim,1,4 Michael S. Waterman,2,3 and Lei M. Li2,3 1Department of Computer Science, Yonsei University, Seoul, 120-749, Republic of Korea; 2Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089, USA; 3Department of Mathematics, University of Southern California, Los Angeles, California 90089, USA One of the main goals in genome sequencing projects is to determine a haploid consensus sequence even when clone libraries are constructed from homologous chromosomes. However, it has been noticed that haplotypes can be inferred from genome assemblies by investigating phase conservation in sequenced reads. In this study, we seek to infer haplotypes, a diploid consensus sequence, from the genome assembly of an organism, Ciona intestinalis. The Ciona intestinalis genome is an ideal resource from which haplotypes can be inferred because of the high polymorphism rate (1.2%). The haplotype estimation scheme consists of polymorphism detection and phase estimation. The core step of our method is a Gibbs sampling procedure. The mate-pair information from two-end sequenced clone inserts is exploited to provide long-range continuity. We estimate the polymorphism rate of Ciona intestinalis to be 1.2% and 1.5%, according to two different polymorphism counting schemes. The distribution of heterozygosity number is well fit by a compound Poisson distribution. The N50 length of haplotype segments is 37.9 kb in our assembly, while the N50 scaffold length of the Ciona intestinalis assembly is 190 kb. -
Íbúakönnun Á Íslandi
ÍBÚAKÖNNUN Á ÍSLANDI Staða og mikilvægi búsetuskilyrða 19 landsvæða á landsbyggðunum frá Hornafirði í austri að Skagafirði í norðri Vífill Karlsson Samtök sveitarfélaga á Vesturlandi Skýrsla SSV Nr. 1 2018 Maí 2018 ISSN 1670-7923 EFNISYFIRLIT 1 Samantekt .................................................................................................................................................................... 8 2 Inngangur ................................................................................................................................................................. 10 3 Aðferð og gögn ........................................................................................................................................................ 10 3.1 Aðferðir í úrvinnslu innan hvers landshluta .................................................................................... 13 3.2 Aðferðir í samanburði á milli allra landshluta ................................................................................. 15 4 Niðurstöður íbúakannana á 19 landsvæðum ............................................................................................ 16 4.1 Almenn velferð íbúanna, ánægja þeirra og framtíðaráform ...................................................... 16 4.1.1 Aðferð: Meðaltöl og frávik afstöðu kvenna, ungra og þeirra sem búa í sveit ............ 16 4.1.2 Hamingja ................................................................................................................................................ 17 -
Phlebobranchia of CTAW
PHLEBOBRANCHIA PHLEBOBRANCHIA The suborder Phlebobranchia (order Enterogona) is characterised by having unpaired gonads present only on the same side of the body as the gut. As in Stolidobranchia, the body is not divided into different sections (such as thorax, abdomen and posterior abdomen) as the gut is folded up in the parietal body wall outside the pharynx and the large branchial sac occupies the whole length of the body. Usually the branchial sac (which is flat, without folds) has internal longitudinal vessels (although only vestiges remain in Agneziidae). Epicardial sacs do not persist in adults as they do in Aplousobranchia, although excretory vesicles (nephrocytes) embedded in the body wall over the gut are known to originate from the embryonic epicardium in Ascidiidae and Corellidae. Most phlebobranchs are solitary. However, Plurellidae Kott, 1973 includes both solitary and colonial forms, and Perophoridae Giard, 1872 are all colonial. Replication in Perophoridae is from ectodermal epithelium (rather than endodermal or mesodermal tissue the mesodermal tissue of the vascular stolon (rather than the endodermal tissue as in most as in Aplousobranchia). The process of replication has not been investigated in Plurellidae. Phlebobranch taxa occurring in Australia are documented in Kott (1985). Family level taxa are characterised principally by the size and form of the branchial sac including the number of branchial vessels and form of the stigmata; the form, size and position of the gonads; and the habit (colonial or solitary) of the taxon. Berrill (1950) has discussed problems in assessing the phylogeny of Perophoridae. References Berrill, N.J. (1950). The Tunicata. Ray Soc. Publs 133: 1–354 Giard, A.M. -
Life-History Strategies of a Native Marine Invertebrate Increasingly Exposed to Urbanisation and Invasion
Temporal Currency: Life-history strategies of a native marine invertebrate increasingly exposed to urbanisation and invasion A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science in Zoology University of Canterbury New Zealand Jason Suwandy 2012 Contents List of Figures ......................................................................................................................................... iii List of Tables .......................................................................................................................................... vi Acknowledgements ............................................................................................................................... vii Abstract ................................................................................................................................................ viii CHAPTER ONE - General Introduction .................................................................................................... 1 1.1 Marine urbanisation and invasion ................................................................................................ 2 1.2 Successful invasion and establishment of populations ................................................................ 4 1.3 Ascidians ....................................................................................................................................... 7 1.4 Native ascidians as study organisms ............................................................................................ -
Preliminary Mass-Balance Food Web Model of the Eastern Chukchi Sea
NOAA Technical Memorandum NMFS-AFSC-262 Preliminary Mass-balance Food Web Model of the Eastern Chukchi Sea by G. A. Whitehouse U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service Alaska Fisheries Science Center December 2013 NOAA Technical Memorandum NMFS The National Marine Fisheries Service's Alaska Fisheries Science Center uses the NOAA Technical Memorandum series to issue informal scientific and technical publications when complete formal review and editorial processing are not appropriate or feasible. Documents within this series reflect sound professional work and may be referenced in the formal scientific and technical literature. The NMFS-AFSC Technical Memorandum series of the Alaska Fisheries Science Center continues the NMFS-F/NWC series established in 1970 by the Northwest Fisheries Center. The NMFS-NWFSC series is currently used by the Northwest Fisheries Science Center. This document should be cited as follows: Whitehouse, G. A. 2013. A preliminary mass-balance food web model of the eastern Chukchi Sea. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-262, 162 p. Reference in this document to trade names does not imply endorsement by the National Marine Fisheries Service, NOAA. NOAA Technical Memorandum NMFS-AFSC-262 Preliminary Mass-balance Food Web Model of the Eastern Chukchi Sea by G. A. Whitehouse1,2 1Alaska Fisheries Science Center 7600 Sand Point Way N.E. Seattle WA 98115 2Joint Institute for the Study of the Atmosphere and Ocean University of Washington Box 354925 Seattle WA 98195 www.afsc.noaa.gov U.S. DEPARTMENT OF COMMERCE Penny. S. Pritzker, Secretary National Oceanic and Atmospheric Administration Kathryn D. -
Cionin, a Vertebrate Cholecystokinin/Gastrin
www.nature.com/scientificreports OPEN Cionin, a vertebrate cholecystokinin/gastrin homolog, induces ovulation in the ascidian Ciona intestinalis type A Tomohiro Osugi, Natsuko Miyasaka, Akira Shiraishi, Shin Matsubara & Honoo Satake* Cionin is a homolog of vertebrate cholecystokinin/gastrin that has been identifed in the ascidian Ciona intestinalis type A. The phylogenetic position of ascidians as the closest living relatives of vertebrates suggests that cionin can provide clues to the evolution of endocrine/neuroendocrine systems throughout chordates. Here, we show the biological role of cionin in the regulation of ovulation. In situ hybridization demonstrated that the mRNA of the cionin receptor, Cior2, was expressed specifcally in the inner follicular cells of pre-ovulatory follicles in the Ciona ovary. Cionin was found to signifcantly stimulate ovulation after 24-h incubation. Transcriptome and subsequent Real-time PCR analyses confrmed that the expression levels of receptor tyrosine kinase (RTK) signaling genes and a matrix metalloproteinase (MMP) gene were signifcantly elevated in the cionin-treated follicles. Of particular interest is that an RTK inhibitor and MMP inhibitor markedly suppressed the stimulatory efect of cionin on ovulation. Furthermore, inhibition of RTK signaling reduced the MMP gene expression in the cionin-treated follicles. These results provide evidence that cionin induces ovulation by stimulating MMP gene expression via the RTK signaling pathway. This is the frst report on the endogenous roles of cionin and the induction of ovulation by cholecystokinin/gastrin family peptides in an organism. Ascidians are the closest living relatives of vertebrates in the Chordata superphylum, and thus they provide important insights into the evolution of peptidergic systems in chordates. -
Halocynthia Roretzi
Sekigami et al. Zoological Letters (2017) 3:17 DOI 10.1186/s40851-017-0078-3 RESEARCH ARTICLE Open Access Hox gene cluster of the ascidian, Halocynthia roretzi, reveals multiple ancient steps of cluster disintegration during ascidian evolution Yuka Sekigami1, Takuya Kobayashi1, Ai Omi1, Koki Nishitsuji2, Tetsuro Ikuta1, Asao Fujiyama3, Noriyuki Satoh2 and Hidetoshi Saiga1* Abstract Background: Hox gene clusters with at least 13 paralog group (PG) members are common in vertebrate genomes and in that of amphioxus. Ascidians, which belong to the subphylum Tunicata (Urochordata), are phylogenetically positioned between vertebrates and amphioxus, and traditionally divided into two groups: the Pleurogona and the Enterogona. An enterogonan ascidian, Ciona intestinalis (Ci), possesses nine Hox genes localized on two chromosomes; thus, the Hox gene cluster is disintegrated. We investigated the Hox gene cluster of a pleurogonan ascidian, Halocynthia roretzi (Hr) to investigate whether Hox gene cluster disintegration is common among ascidians, and if so, how such disintegration occurred during ascidian or tunicate evolution. Results: Our phylogenetic analysis reveals that the Hr Hox gene complement comprises nine members, including one with a relatively divergent Hox homeodomain sequence. Eight of nine Hr Hox genes were orthologous to Ci-Hox1, 2, 3, 4, 5, 10, 12 and 13. Following the phylogenetic classification into 13 PGs, we designated Hr Hox genes as Hox1, 2, 3, 4, 5, 10, 11/12/13.a, 11/12/13.b and HoxX. To address the chromosomal arrangement of the nine Hox genes, we performed two-color chromosomal fluorescent in situ hybridization, which revealed that the nine Hox genes are localized on a single chromosome in Hr, distinct from their arrangement in Ci. -
1471-2148-9-187.Pdf
BMC Evolutionary Biology BioMed Central Research article Open Access An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Georgia Tsagkogeorga1,2, Xavier Turon3, Russell R Hopcroft4, Marie- Ka Tilak1,2, Tamar Feldstein5, Noa Shenkar5,6, Yossi Loya5, Dorothée Huchon5, Emmanuel JP Douzery1,2 and Frédéric Delsuc*1,2 Address: 1Université Montpellier 2, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 2CNRS, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 3Centre d'Estudis Avançats de Blanes (CEAB, CSIC), Accés Cala S. Francesc 14, 17300 Blanes (Girona), Spain, 4Institute of Marine Science, University of Alaska Fairbanks, Fairbanks, Alaska, USA, 5Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, Israel and 6Department of Biology, University of Washington, Seattle WA 98195, USA Email: Georgia Tsagkogeorga - [email protected]; Xavier Turon - [email protected]; Russell R Hopcroft - [email protected]; Marie-Ka Tilak - [email protected]; Tamar Feldstein - [email protected]; Noa Shenkar - [email protected]; Yossi Loya - [email protected]; Dorothée Huchon - [email protected]; Emmanuel JP Douzery - [email protected]; Frédéric Delsuc* - [email protected] * Corresponding author Published: 5 August 2009 Received: 16 October 2008 Accepted: 5 August 2009 BMC Evolutionary Biology 2009, 9:187 doi:10.1186/1471-2148-9-187 This article is available from: http://www.biomedcentral.com/1471-2148/9/187 © 2009 Tsagkogeorga et al; licensee BioMed Central Ltd. -
De Novo Draft Assembly of the Botrylloides Leachii Genome
bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 De novo draft assembly of the Botrylloides leachii genome 2 provides further insight into tunicate evolution. 3 4 Simon Blanchoud1#, Kim Rutherford2, Lisa Zondag1, Neil Gemmell2 and Megan J Wilson1* 5 6 1 Developmental Biology and Genomics Laboratory 7 2 8 Department of Anatomy, School of Biomedical Sciences, University of Otago, P.O. Box 56, 9 Dunedin 9054, New Zealand 10 # Current address: Department of Zoology, University of Fribourg, Switzerland 11 12 * Corresponding author: 13 Email: [email protected] 14 Ph. +64 3 4704695 15 Fax: +64 479 7254 16 17 Keywords: chordate, regeneration, Botrylloides leachii, ascidian, tunicate, genome, evolution 1 bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 18 Abstract (250 words) 19 Tunicates are marine invertebrates that compose the closest phylogenetic group to the 20 vertebrates. This chordate subphylum contains a particularly diverse range of reproductive 21 methods, regenerative abilities and life-history strategies. Consequently, tunicates provide an 22 extraordinary perspective into the emergence and diversity of chordate traits. Currently 23 published tunicate genomes include three Phlebobranchiae, one Thaliacean, one Larvacean 24 and one Stolidobranchian. To gain further insights into the evolution of the tunicate phylum, 25 we have sequenced the genome of the colonial Stolidobranchian Botrylloides leachii. -
Marine Biology
Marine Biology Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. --Manuscript Draft-- Manuscript Number: MABI-D-16-00297 Full Title: Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. Article Type: S.I. : Invasive Species Keywords: ascidians, biofouling, biogeography, marine invasions, nonindigenous, non-native species, North America Corresponding Author: Christina Simkanin, Phd Smithsonian Environmental Research Center Edgewater, MD UNITED STATES Corresponding Author Secondary Information: Corresponding Author's Institution: Smithsonian Environmental Research Center Corresponding Author's Secondary Institution: First Author: Christina Simkanin, Phd First Author Secondary Information: Order of Authors: Christina Simkanin, Phd Paul W. Fofonoff Kristen Larson Gretchen Lambert Jennifer Dijkstra Gregory M. Ruiz Order of Authors Secondary Information: Funding Information: California Department of Fish and Wildlife Dr. Gregory M. Ruiz National Sea Grant Program Dr. Gregory M. Ruiz Prince William Sound Regional Citizens' Dr. Gregory M. Ruiz Advisory Council Smithsonian Institution Dr. Gregory M. Ruiz United States Coast Guard Dr. Gregory M. Ruiz United States Department of Defense Dr. Gregory M. Ruiz Legacy Program Abstract: SSpecies introductions have increased dramatically in number, rate, and magnitude of impact in recent decades. In marine systems, invertebrates are the largest and most diverse component of coastal invasions throughout the world. Ascidians are conspicuous and well-studied members of this group, however, much of what is known about their invasion history is limited to particular species or locations. Here, we provide a large-scale assessment of invasions, using an extensive literature review and standardized field surveys, to characterize the invasion dynamics of non-native ascidians in the continental United States and Alaska.