Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science
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Halocynthia Roretzi
Sekigami et al. Zoological Letters (2017) 3:17 DOI 10.1186/s40851-017-0078-3 RESEARCH ARTICLE Open Access Hox gene cluster of the ascidian, Halocynthia roretzi, reveals multiple ancient steps of cluster disintegration during ascidian evolution Yuka Sekigami1, Takuya Kobayashi1, Ai Omi1, Koki Nishitsuji2, Tetsuro Ikuta1, Asao Fujiyama3, Noriyuki Satoh2 and Hidetoshi Saiga1* Abstract Background: Hox gene clusters with at least 13 paralog group (PG) members are common in vertebrate genomes and in that of amphioxus. Ascidians, which belong to the subphylum Tunicata (Urochordata), are phylogenetically positioned between vertebrates and amphioxus, and traditionally divided into two groups: the Pleurogona and the Enterogona. An enterogonan ascidian, Ciona intestinalis (Ci), possesses nine Hox genes localized on two chromosomes; thus, the Hox gene cluster is disintegrated. We investigated the Hox gene cluster of a pleurogonan ascidian, Halocynthia roretzi (Hr) to investigate whether Hox gene cluster disintegration is common among ascidians, and if so, how such disintegration occurred during ascidian or tunicate evolution. Results: Our phylogenetic analysis reveals that the Hr Hox gene complement comprises nine members, including one with a relatively divergent Hox homeodomain sequence. Eight of nine Hr Hox genes were orthologous to Ci-Hox1, 2, 3, 4, 5, 10, 12 and 13. Following the phylogenetic classification into 13 PGs, we designated Hr Hox genes as Hox1, 2, 3, 4, 5, 10, 11/12/13.a, 11/12/13.b and HoxX. To address the chromosomal arrangement of the nine Hox genes, we performed two-color chromosomal fluorescent in situ hybridization, which revealed that the nine Hox genes are localized on a single chromosome in Hr, distinct from their arrangement in Ci. -
1471-2148-9-187.Pdf
BMC Evolutionary Biology BioMed Central Research article Open Access An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Georgia Tsagkogeorga1,2, Xavier Turon3, Russell R Hopcroft4, Marie- Ka Tilak1,2, Tamar Feldstein5, Noa Shenkar5,6, Yossi Loya5, Dorothée Huchon5, Emmanuel JP Douzery1,2 and Frédéric Delsuc*1,2 Address: 1Université Montpellier 2, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 2CNRS, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 3Centre d'Estudis Avançats de Blanes (CEAB, CSIC), Accés Cala S. Francesc 14, 17300 Blanes (Girona), Spain, 4Institute of Marine Science, University of Alaska Fairbanks, Fairbanks, Alaska, USA, 5Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, Israel and 6Department of Biology, University of Washington, Seattle WA 98195, USA Email: Georgia Tsagkogeorga - [email protected]; Xavier Turon - [email protected]; Russell R Hopcroft - [email protected]; Marie-Ka Tilak - [email protected]; Tamar Feldstein - [email protected]; Noa Shenkar - [email protected]; Yossi Loya - [email protected]; Dorothée Huchon - [email protected]; Emmanuel JP Douzery - [email protected]; Frédéric Delsuc* - [email protected] * Corresponding author Published: 5 August 2009 Received: 16 October 2008 Accepted: 5 August 2009 BMC Evolutionary Biology 2009, 9:187 doi:10.1186/1471-2148-9-187 This article is available from: http://www.biomedcentral.com/1471-2148/9/187 © 2009 Tsagkogeorga et al; licensee BioMed Central Ltd. -
De Novo Draft Assembly of the Botrylloides Leachii Genome
bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 De novo draft assembly of the Botrylloides leachii genome 2 provides further insight into tunicate evolution. 3 4 Simon Blanchoud1#, Kim Rutherford2, Lisa Zondag1, Neil Gemmell2 and Megan J Wilson1* 5 6 1 Developmental Biology and Genomics Laboratory 7 2 8 Department of Anatomy, School of Biomedical Sciences, University of Otago, P.O. Box 56, 9 Dunedin 9054, New Zealand 10 # Current address: Department of Zoology, University of Fribourg, Switzerland 11 12 * Corresponding author: 13 Email: [email protected] 14 Ph. +64 3 4704695 15 Fax: +64 479 7254 16 17 Keywords: chordate, regeneration, Botrylloides leachii, ascidian, tunicate, genome, evolution 1 bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 18 Abstract (250 words) 19 Tunicates are marine invertebrates that compose the closest phylogenetic group to the 20 vertebrates. This chordate subphylum contains a particularly diverse range of reproductive 21 methods, regenerative abilities and life-history strategies. Consequently, tunicates provide an 22 extraordinary perspective into the emergence and diversity of chordate traits. Currently 23 published tunicate genomes include three Phlebobranchiae, one Thaliacean, one Larvacean 24 and one Stolidobranchian. To gain further insights into the evolution of the tunicate phylum, 25 we have sequenced the genome of the colonial Stolidobranchian Botrylloides leachii. -
Marine Biology
Marine Biology Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. --Manuscript Draft-- Manuscript Number: MABI-D-16-00297 Full Title: Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. Article Type: S.I. : Invasive Species Keywords: ascidians, biofouling, biogeography, marine invasions, nonindigenous, non-native species, North America Corresponding Author: Christina Simkanin, Phd Smithsonian Environmental Research Center Edgewater, MD UNITED STATES Corresponding Author Secondary Information: Corresponding Author's Institution: Smithsonian Environmental Research Center Corresponding Author's Secondary Institution: First Author: Christina Simkanin, Phd First Author Secondary Information: Order of Authors: Christina Simkanin, Phd Paul W. Fofonoff Kristen Larson Gretchen Lambert Jennifer Dijkstra Gregory M. Ruiz Order of Authors Secondary Information: Funding Information: California Department of Fish and Wildlife Dr. Gregory M. Ruiz National Sea Grant Program Dr. Gregory M. Ruiz Prince William Sound Regional Citizens' Dr. Gregory M. Ruiz Advisory Council Smithsonian Institution Dr. Gregory M. Ruiz United States Coast Guard Dr. Gregory M. Ruiz United States Department of Defense Dr. Gregory M. Ruiz Legacy Program Abstract: SSpecies introductions have increased dramatically in number, rate, and magnitude of impact in recent decades. In marine systems, invertebrates are the largest and most diverse component of coastal invasions throughout the world. Ascidians are conspicuous and well-studied members of this group, however, much of what is known about their invasion history is limited to particular species or locations. Here, we provide a large-scale assessment of invasions, using an extensive literature review and standardized field surveys, to characterize the invasion dynamics of non-native ascidians in the continental United States and Alaska. -
Ascidiacea (Chordata: Tunicata) of Greece: an Updated Checklist
Biodiversity Data Journal 4: e9273 doi: 10.3897/BDJ.4.e9273 Taxonomic Paper Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist Chryssanthi Antoniadou‡, Vasilis Gerovasileiou§§, Nicolas Bailly ‡ Department of Zoology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Greece § Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Greece Corresponding author: Chryssanthi Antoniadou ([email protected]) Academic editor: Christos Arvanitidis Received: 18 May 2016 | Accepted: 17 Jul 2016 | Published: 01 Nov 2016 Citation: Antoniadou C, Gerovasileiou V, Bailly N (2016) Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist. Biodiversity Data Journal 4: e9273. https://doi.org/10.3897/BDJ.4.e9273 Abstract Background The checklist of the ascidian fauna (Tunicata: Ascidiacea) of Greece was compiled within the framework of the Greek Taxon Information System (GTIS), an application of the LifeWatchGreece Research Infrastructure (ESFRI) aiming to produce a complete checklist of species recorded from Greece. This checklist was constructed by updating an existing one with the inclusion of recently published records. All the reported species from Greek waters were taxonomically revised and cross-checked with the Ascidiacea World Database. New information The updated checklist of the class Ascidiacea of Greece comprises 75 species, classified in 33 genera, 12 families, and 3 orders. In total, 8 species have been added to the previous species list (4 Aplousobranchia, 2 Phlebobranchia, and 2 Stolidobranchia). Aplousobranchia was the most speciose order, followed by Stolidobranchia. Most species belonged to the families Didemnidae, Polyclinidae, Pyuridae, Ascidiidae, and Styelidae; these 4 families comprise 76% of the Greek ascidian species richness. The present effort revealed the limited taxonomic research effort devoted to the ascidian fauna of Greece, © Antoniadou C et al. -
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science Scientific Name: Botrylloides violaceus Phylum Chordata Common Name chain tunicate Class Ascidiacea Order Stolidobranchia Family Styelidae Z:\GAP\NPRB Marine Invasives\NPRB_DB\SppMaps\BOTVIO.png 80 Final Rank 56.25 Data Deficiency: 0.00 Category Scores and Data Deficiencies Total Data Deficient Category Score Possible Points Distribution and Habitat: 22 30 0 Anthropogenic Influence: 4.75 10 0 Biological Characteristics: 20.5 30 0 Impacts: 9 30 0 Figure 1. Occurrence records for non-native species, and their geographic proximity to the Bering Sea. Ecoregions are based on the classification system by Spalding et al. (2007). Totals: 56.25 100.00 0.00 Occurrence record data source(s): NEMESIS and NAS databases. General Biological Information Tolerances and Thresholds Minimum Temperature (°C) -1 Minimum Salinity (ppt) 20 Maximum Temperature (°C) 29 Maximum Salinity (ppt) 38 Minimum Reproductive Temperature (°C) 15 Minimum Reproductive Salinity (ppt) 26 Maximum Reproductive Temperature (°C) 25 Maximum Reproductive Salinity (ppt) 38 Additional Notes B. violaceus is a thinly encrusting, colonial tunicate. Colonies are uniformly colored, but can vary from purple, red, yellow, orange and brown. It species is native to the Northwest Pacific, but has been introduced on both coasts of North America, and parts of Atlantic Europe. It is a common fouling organism throughout much of its introduced range, where it often displaces and competes with other native and non-native fouling organisms, including tunicates, bryozoans, barnacles, and mussels. Reviewed by Linda Shaw, NOAA Fisheries Alaska Regional Office, Juneau AK Review Date: 8/31/2017 Report updated on Wednesday, December 06, 2017 Page 1 of 14 1. -
1 Phylogeny of the Families Pyuridae and Styelidae (Stolidobranchiata
* Manuscript 1 Phylogeny of the families Pyuridae and Styelidae (Stolidobranchiata, Ascidiacea) 2 inferred from mitochondrial and nuclear DNA sequences 3 4 Pérez-Portela Ra, b, Bishop JDDb, Davis ARc, Turon Xd 5 6 a Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 7 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 8 9 b Marine Biological Association of United Kingdom, The Laboratory Citadel Hill, PL1 10 2PB, Plymouth, UK, and School of Biological Sciences, University of Plymouth PL4 11 8AA, Plymouth, UK 12 13 c School of Biological Sciences, University of Wollongong, Wollongong NSW 2522 14 Australia 15 16 d Centre d’Estudis Avançats de Blanes (CSIC), Accés a la Cala St. Francesc 14, Blanes, 17 Girona, E-17300, Spain 18 19 Email addresses: 20 Bishop JDD: [email protected] 21 Davis AR: [email protected] 22 Turon X: [email protected] 23 24 Corresponding author: 25 Rocío Pérez-Portela 26 Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 27 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 28 Phone: + 351 21 8811226 29 Fax: + 351 21 8860954 30 [email protected] 31 1 32 Abstract 33 34 The Order Stolidobranchiata comprises the families Pyuridae, Styelidae and Molgulidae. 35 Early molecular data was consistent with monophyly of the Stolidobranchiata and also 36 the Molgulidae. Internal phylogeny and relationships between Styelidae and Pyuridae 37 were inconclusive however. In order to clarify these points we used mitochondrial and 38 nuclear sequences from 31 species of Styelidae and 25 of Pyuridae. Phylogenetic trees 39 recovered the Pyuridae as a monophyletic clade, and their genera appeared as 40 monophyletic with the exception of Pyura. -
Redalyc.Keys for the Identification of Families and Genera of Atlantic
Biota Neotropica ISSN: 1676-0611 [email protected] Instituto Virtual da Biodiversidade Brasil Moreira da Rocha, Rosana; Bastos Zanata, Thais; Moreno, Tatiane Regina Keys for the identification of families and genera of Atlantic shallow water ascidians Biota Neotropica, vol. 12, núm. 1, enero-marzo, 2012, pp. 1-35 Instituto Virtual da Biodiversidade Campinas, Brasil Available in: http://www.redalyc.org/articulo.oa?id=199123750022 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Keys for the identification of families and genera of Atlantic shallow water ascidians Rocha, R.M. et al. Biota Neotrop. 2012, 12(1): 000-000. On line version of this paper is available from: http://www.biotaneotropica.org.br/v12n1/en/abstract?identification-key+bn01712012012 A versão on-line completa deste artigo está disponível em: http://www.biotaneotropica.org.br/v12n1/pt/abstract?identification-key+bn01712012012 Received/ Recebido em 16/07/2011 - Revised/ Versão reformulada recebida em 13/03/2012 - Accepted/ Publicado em 14/03/2012 ISSN 1676-0603 (on-line) Biota Neotropica is an electronic, peer-reviewed journal edited by the Program BIOTA/FAPESP: The Virtual Institute of Biodiversity. This journal’s aim is to disseminate the results of original research work, associated or not to the program, concerned with characterization, conservation and sustainable use of biodiversity within the Neotropical region. Biota Neotropica é uma revista do Programa BIOTA/FAPESP - O Instituto Virtual da Biodiversidade, que publica resultados de pesquisa original, vinculada ou não ao programa, que abordem a temática caracterização, conservação e uso sustentável da biodiversidade na região Neotropical. -
Bostricobranchus Digonas Abbott (Ascidiacea, Molgulidae) in Paranaguá Bay, Paraná, Brazil
Bostricobranchus digonas Abbott (Ascidiacea, Molgulidae) in paranaguá Bay, Paraná, Brazil. A case of recent invasion? 1 Rosana Moreira da Rocha 2 ABSTRACT. Bostricobranchus digonas Abbott, 1951 was discovered by dredging near Cotinga Island, Paranaguá Bay, Paraná (25°31'5 II "S, 48°28'714"W). Concen trated in a small area 1.5 m deep, lhe animais were collected by a Van Veen devi ce. All sizes from 3 mm up to 2 cm in body diameter were recovered. This is the ftrst report of a species of this genus in lhe South Atlantic and its occurrence is discussed. KEY WORDS . Ascidiacea, Molgulidae, Bostricobranchus, nonindigenous fauna Bostricobranchus digonas Abbott, 1951 is an estuarine species, to date, only described in Florida, USA. Here, the second occurrence of this species is reported in southeastern Brazil. Many individuais were collected in Paranaguá estuary, but surprisingly subsequent sampling failed to find more individuaIs. Marine species invasions have received much concern in recent years (CARLTON & GELLER 1993; LAMBERT 2001 for a review on ascidians) and one of the most difficult aspects in studying the consequences of these invasions is to determine when new species arrive in any region. This paper describes morpholo gical characters of a Bostricobranchus Traustedt, 1883 population showing that the individuais are very similar to the population of B. digonas from Florida, to which it is thought conspecific. AIso, the presence of an important harbor for petroleum tanking ships nearby suggests that this is a possible recent introduction. MATERIAL ANO METHOOS Specimens were collected in August 2000 by a Van Veen devi ce at Cotinga Island, Paranaguá Bay, Paraná (25°31 '511 "S, 48°28'714"W), an important estuary in southern Brazil. -
Pedunculate Molgula Species (Ascidiidae, Molgulidae) from the French Antarctic Sector
Zootaxa 3920 (1): 171–197 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3920.1.9 http://zoobank.org/urn:lsid:zoobank.org:pub:C6BB0C5A-3317-4119-9C41-02F0EC487A9E Pedunculate Molgula species (Ascidiidae, Molgulidae) from the French Antarctic sector. Redescription and taxonomic revision FRANÇOISE MONNIOT1 & AGNÈS DETTAI2 1Muséum national d’Histoire naturelle, DMPA, 57 rue Cuvier Fr 75231 Paris cedex 05, France. E-mail: [email protected] 2Institut de systématique et Evolution, YSYEB-UMR 7205, UMPC EPHE Muséum national d’Histoire naturelle CP 26, 57 rue Cuvier 75231 Paris cedex 05 France. E-mail: [email protected] Abstract Following the Challenger Expedition in the southern Hemisphere, several international surveys have studied Antarctic as- cidians. Several pedunculate Molgula were successively described under various names. From the French part of the Ant- arctic continent and the Kerguelen area, numerous Molgula were recently collected. They are described here in different species, but closely allied. Their taxonomy is revised with an historical review of the most detailed publications and a link to the ancient names. Key words: Antarctic, Ascidians, Molgula species Introduction From the nineteenth century successive expeditions have investigated the benthic marine invertebrate fauna around the Antarctic continent. The “Challenger Expedition” (1873–1876) was the first to collect a large amount of invertebrates at different depths. Later, simultaneous surveys have also explored the southern ocean: the “Deutsch Sud-Polar Expedition” (1901–1903), the British “National Expedition” (1901–1904), the “Swedish Antarctic Expedition” (1901–1903), the “French Antarctic Expedition” (1903–1905), the “Australian Antarctic Expedition” (1911–1914). -
Ascidian News #82 December 2018
ASCIDIAN NEWS* Gretchen Lambert 12001 11th Ave. NW, Seattle, WA 98177 206-365-3734 [email protected] home page: http://depts.washington.edu/ascidian/ Number 82 December 2018 A big thank-you to all who sent in contributions. There are 85 New Publications listed at the end of this issue. Please continue to send me articles, and your new papers, to be included in the June 2019 issue of AN. It’s never too soon to plan ahead. *Ascidian News is not part of the scientific literature and should not be cited as such. NEWS AND VIEWS 1. From Stefano Tiozzo ([email protected]) and Remi Dumollard ([email protected]): The 10th Intl. Tunicata Meeting will be held at the citadel of Saint Helme in Villefranche sur Mer (France), 8- 12 July 2019. The web site with all the information will be soon available, save the date! We are looking forward to seeing you here in the Riviera. A bientôt! Remi and Stefano 2. The 10th Intl. Conference on Marine Bioinvasions was held in Puerto Madryn, Patagonia, Argentina, October 16-18. At the conference website (http://www.marinebioinvasions.info/index) the program and abstracts in pdf can be downloaded. Dr. Rosana Rocha presented one of the keynote talks: "Ascidians in the anthropocene - invasions waiting to happen". See below under Meetings Abstracts for all the ascidian abstracts; my thanks to Evangelina Schwindt for compiling them. The next (11th) meeting will be in Annapolis, Maryland, organized by Greg Ruiz, Smithsonian Invasions lab, date to be determined. 3. Conference proceedings of the May 2018 Invasive Sea Squirt Conference will be peer reviewed and published in a special issue of the REABIC journal Management of Biological Invasions. -
Metabarcoding Analysis on European Coastal Samples Reveals New
www.nature.com/scientificreports OPEN Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity Received: 8 November 2017 David López-Escardó1, Jordi Paps2, Colomban de Vargas3,4, Ramon Massana5, Accepted: 5 June 2018 Iñaki Ruiz-Trillo 1,6,7 & Javier del Campo1,5 Published: xx xx xxxx Although animals are among the best studied organisms, we still lack a full description of their diversity, especially for microscopic taxa. This is partly due to the time-consuming and costly nature of surveying animal diversity through morphological and molecular studies of individual taxa. A powerful alternative is the use of high-throughput environmental sequencing, providing molecular data from all organisms sampled. We here address the unknown diversity of animal phyla in marine environments using an extensive dataset designed to assess eukaryotic ribosomal diversity among European coastal locations. A multi-phylum assessment of marine animal diversity that includes water column and sediments, oxic and anoxic environments, and both DNA and RNA templates, revealed a high percentage of novel 18S rRNA sequences in most phyla, suggesting that marine environments have not yet been fully sampled at a molecular level. This novelty is especially high among Platyhelminthes, Acoelomorpha, and Nematoda, which are well studied from a morphological perspective and abundant in benthic environments. We also identifed, based on molecular data, a potentially novel group of widespread tunicates. Moreover, we recovered a high number of reads for Ctenophora and Cnidaria in the smaller fractions suggesting their gametes might play a greater ecological role than previously suspected. Te animal kingdom is one of the best-studied branches of the tree of life1, with more than 1.5 million species described in around 35 diferent phyla2.