Styela Plicata Global Invasive Species Database (GISD)
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Bacteria Associated with Tunicate, Polycarpa Aurata, from Lease Sea, Maluku, Indonesia Exhibiting Anti-Multidrug Resistant Bacteria
BIODIVERSITAS ISSN: 1412-033X Volume 20, Number 4, April 2019 E-ISSN: 2085-4722 Pages: 956-964 DOI: 10.13057/biodiv/d200404 Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria DIAH AYUNINGRUM1,5, RHESI KRISTIANA1, AYUNDA AINUN NISA2, SEPTHY KUSUMA RADJASA2, SAKTI IMAM MUCHLISSIN2,4, OCKY KARNA RADJASA2,3, AGUS SABDONO2, AGUS TRIANTO2, 1Department of Coastal Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia 2Department of Marine Science, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedarto, SH, Tembalang, Semarang 50275, Central Java, Indonesia. Tel.: +62-24-7474698, Fax.: +62-24-7474698, email: [email protected]. 3Directorate of Research and Community Services, Ministry of Research, Technology and Higher Education. D Building, Jl. Jenderal Sudirman Pintu Satu, Senayan, Jakarta Pusat 10279, Indonesia 4Tropical Marine Biotechnology Laboratory, Universitas Diponegoro Jl. Lingkar Utara Undip, Semarang 50275, Central Java, Indonesia 1Department of Aquatic Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia Manuscript received: 30 January 2019. Revision accepted: 10 March 2019. Abstract. Ayuningrum D, Kristiana R, Nisa AA, Radjasa SK, Muchlissin SI, Radjasa OK, Sabdono A, Trianto A. 2019. Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria. Biodiversitas 20: 956-964. Tunicate is a rich secondary metabolites producer with various biological activities whether as an original producer or produced by the associated microorganisms. In this study, a total of 11 tunicate specimens were identified as Polycarpa aurata with four color variations based on morphological characteristic and COI gene identification and BLAST analysis. -
The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Ascidian Cannibalism Correlates with Larval Behavior and Adult Distribution
FAU Institutional Repository http://purl.fcla.edu/fau/fauir This paper was submitted by the faculty of FAU’s Harbor Branch Oceanographic Institute. Notice: ©1988 Elsevier Ltd. The final published version of this manuscript is available at http://www.sciencedirect.com/science/journal/00220981 and may be cited as: Young, C. M. (1988). Ascidian cannibalism correlates with larval behavior and adult distribution. Journal of Experimental Marine Biology and Ecology, 117(1), 9-26. doi:10.1016/0022-0981(88)90068-8 J. Exp. Mar. Bioi. £Col., 1988, Vol. 117, pp. 9-26 9 Elsevier JEM 01042 Ascidian cannibalism correlates with larval behavior and adult distribution Craig M. Young Department ofLarval Ecology. Harbor Branch Oceanographic Institution, Fort Pierce, Florida. U.S.A. (Received 24 March 1987; revision received 9 December 1987; accepted 22 December 1987) Abstract: In the San Juan Islands, Washington, solitary ascidians .that occur in dense monospecific aggregations demonstrate gregarious settlement as larvae, whereas species that occur as isolated individuals do not. All gregarious species reject their own eggs and larvae as food, but nongregarious species consume conspecific eggs and larvae. Moreover, the rejection mechanism is species-specific in some cases. Correla tion analysis suggests that species specificity of the rejection response has a basis in siphon diameter, egg density, and larval size, but not in number of oral tentacles, or tentacle branching. One strongly cannibalistic species, Corella inflata Huntsman, avoids consuming its own eggs and newly released tadpoles by a unique brooding mechanism that involves floating eggs, negative geotaxis after hatching, and adult orientation. Key words: Ascidian; Cannibalism; Distribution; Larva; Settlement behavior INTRODUCTION Many sessile marine invertebrates, including filter-feeders such as mussels, oysters, barnacles and ascidians, occur in discrete, dense aggregations. -
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AUSTRALIAN MUSEUM SCIENTIFIC PUBLICATIONS Birkeland, Charles, P. K. Dayton and N. A. Engstrom, 1982. Papers from the Echinoderm Conference. 11. A stable system of predation on a holothurian by four asteroids and their top predator. Australian Museum Memoir 16: 175–189, ISBN 0-7305-5743-6. [31 December 1982]. doi:10.3853/j.0067-1967.16.1982.365 ISSN 0067-1967 Published by the Australian Museum, Sydney naturenature cultureculture discover discover AustralianAustralian Museum Museum science science is is freely freely accessible accessible online online at at www.australianmuseum.net.au/publications/www.australianmuseum.net.au/publications/ 66 CollegeCollege Street,Street, SydneySydney NSWNSW 2010,2010, AustraliaAustralia THE AUSTRALIAN MUSEUM, SYDNEY MEMOIR 16 Papers from the Echinoderm Conference THE AUSTRALIAN MUSEUM SYDNEY, 1978 Edited by FRANCIS W. E. ROWE The Australian Museum, Sydney Published by order of the Trustees of The Australian Museum Sydney, New South Wales, Australia 1982 Manuscripts accepted lelr publication 27 March 1980 ORGANISER FRANCIS W. E. ROWE The Australian Museum, Sydney, New South Wales, Australia CHAIRMEN OF SESSIONS AILSA M. CLARK British Museum (Natural History), London, England. MICHEL J ANGOUX Universite Libre de Bruxelles, Bruxelles, Belgium. PORTER KIER Smithsonian Institution, Washington, D.C., 20560, U.S.A. JOHN LUCAS James Cook University, Townsville, Queensland, Australia. LOISETTE M. MARSH Western Australian Museum, Perth, Western Australia. DAVID NICHOLS Exeter University, Exeter, Devon, England. DAVID L. PAWSON Smithsonian Institution, Washington, D.e. 20560, U.S.A. FRANCIS W. E. ROWE The Australian Museum, Sydney, New South Wales, Australia. CONTRIBUTIONS BIRKELAND, Charles, University of Guam, U.S.A. 96910. (p. 175). BRUCE, A. -
Spatial Variation in Hard-Bottom Epifauna in the Santa Maria Basin, California: the Importance of Physical Factors
Marine Environmental Research 37 (1994) 165-193 Spatial Variation in Hard-Bottom Epifauna in the Santa Maria Basin, California: The Importance of Physical Factors Dane D. Hardin,* Jonathon Toal, Terence Parr, Peter Wilde & Kathleen Dorsey Kinnetic Laboratories, Inc., 307 Washington Street, Santa Cruz, California 95060, USA A BSTRA CT Hard-bottom epifauna were photographically sampled at 11 locations in the Santa Mar& Basin near Platform Hidalgo. The sampling locations ranged in depth from 105 to 212 m, and were categorized as either low- relief (0.2-0.5 m) or high-relief (>1.0 m) habitat. Sampling was conducted on seven occasions between October 1986 and October 1990. Analysis of variance indicated that the 22 most common taxa varied according to depth and habitat relief with many taxa exhibiting highest abundances in deeper high-relief locations. Some of the deep high-relief taxa also varied according to orientation on high-relief rocks, and most often faced into stronger currents. Conversely, several taxa which were most abundant in low-relief habitat often faced into weaker currents. There was a strong negative correlation (r = -0.988) between the combined abundances of the deep high-relief taxa and the flux of suspended sediments measured with near-bottom sediment traps at each location. We suggest that the rich epi- faunal assemblages that characterize deep high-relief habitat in the Santa Maria Basin are associated with a balance between the positive effects of high current speeds and the negative effects of suspended sediments. INTRODUCTION Rocky intertidal and shallow subtidal habitats have been extensively studied, and there are numerous physical and biological factors known to affect their community composition. -
Life-History Strategies of a Native Marine Invertebrate Increasingly Exposed to Urbanisation and Invasion
Temporal Currency: Life-history strategies of a native marine invertebrate increasingly exposed to urbanisation and invasion A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science in Zoology University of Canterbury New Zealand Jason Suwandy 2012 Contents List of Figures ......................................................................................................................................... iii List of Tables .......................................................................................................................................... vi Acknowledgements ............................................................................................................................... vii Abstract ................................................................................................................................................ viii CHAPTER ONE - General Introduction .................................................................................................... 1 1.1 Marine urbanisation and invasion ................................................................................................ 2 1.2 Successful invasion and establishment of populations ................................................................ 4 1.3 Ascidians ....................................................................................................................................... 7 1.4 Native ascidians as study organisms ............................................................................................ -
Preliminary Mass-Balance Food Web Model of the Eastern Chukchi Sea
NOAA Technical Memorandum NMFS-AFSC-262 Preliminary Mass-balance Food Web Model of the Eastern Chukchi Sea by G. A. Whitehouse U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service Alaska Fisheries Science Center December 2013 NOAA Technical Memorandum NMFS The National Marine Fisheries Service's Alaska Fisheries Science Center uses the NOAA Technical Memorandum series to issue informal scientific and technical publications when complete formal review and editorial processing are not appropriate or feasible. Documents within this series reflect sound professional work and may be referenced in the formal scientific and technical literature. The NMFS-AFSC Technical Memorandum series of the Alaska Fisheries Science Center continues the NMFS-F/NWC series established in 1970 by the Northwest Fisheries Center. The NMFS-NWFSC series is currently used by the Northwest Fisheries Science Center. This document should be cited as follows: Whitehouse, G. A. 2013. A preliminary mass-balance food web model of the eastern Chukchi Sea. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-262, 162 p. Reference in this document to trade names does not imply endorsement by the National Marine Fisheries Service, NOAA. NOAA Technical Memorandum NMFS-AFSC-262 Preliminary Mass-balance Food Web Model of the Eastern Chukchi Sea by G. A. Whitehouse1,2 1Alaska Fisheries Science Center 7600 Sand Point Way N.E. Seattle WA 98115 2Joint Institute for the Study of the Atmosphere and Ocean University of Washington Box 354925 Seattle WA 98195 www.afsc.noaa.gov U.S. DEPARTMENT OF COMMERCE Penny. S. Pritzker, Secretary National Oceanic and Atmospheric Administration Kathryn D. -
Halocynthia Roretzi
Sekigami et al. Zoological Letters (2017) 3:17 DOI 10.1186/s40851-017-0078-3 RESEARCH ARTICLE Open Access Hox gene cluster of the ascidian, Halocynthia roretzi, reveals multiple ancient steps of cluster disintegration during ascidian evolution Yuka Sekigami1, Takuya Kobayashi1, Ai Omi1, Koki Nishitsuji2, Tetsuro Ikuta1, Asao Fujiyama3, Noriyuki Satoh2 and Hidetoshi Saiga1* Abstract Background: Hox gene clusters with at least 13 paralog group (PG) members are common in vertebrate genomes and in that of amphioxus. Ascidians, which belong to the subphylum Tunicata (Urochordata), are phylogenetically positioned between vertebrates and amphioxus, and traditionally divided into two groups: the Pleurogona and the Enterogona. An enterogonan ascidian, Ciona intestinalis (Ci), possesses nine Hox genes localized on two chromosomes; thus, the Hox gene cluster is disintegrated. We investigated the Hox gene cluster of a pleurogonan ascidian, Halocynthia roretzi (Hr) to investigate whether Hox gene cluster disintegration is common among ascidians, and if so, how such disintegration occurred during ascidian or tunicate evolution. Results: Our phylogenetic analysis reveals that the Hr Hox gene complement comprises nine members, including one with a relatively divergent Hox homeodomain sequence. Eight of nine Hr Hox genes were orthologous to Ci-Hox1, 2, 3, 4, 5, 10, 12 and 13. Following the phylogenetic classification into 13 PGs, we designated Hr Hox genes as Hox1, 2, 3, 4, 5, 10, 11/12/13.a, 11/12/13.b and HoxX. To address the chromosomal arrangement of the nine Hox genes, we performed two-color chromosomal fluorescent in situ hybridization, which revealed that the nine Hox genes are localized on a single chromosome in Hr, distinct from their arrangement in Ci. -
The Ascidian Styela Plicata As a Potential Bioremediator of Bacterial and Algal Contamination of Marine Estuarine Waters
THE ASCIDIAN STYELA PLICATA AS A POTENTIAL BIOREMEDIATOR OF BACTERIAL AND ALGAL CONTAMINATION OF MARINE ESTUARINE WATERS by Lisa Denham Draughon A Dissertation Submitted to the Faculty of The Charles E. Schmidt College of Science In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Florida Atlantic University Boca Raton, Florida May, 2010 Copyright by Lisa Denham Draughon 2010 ii ACKNOWLEDGEMENTS I wish to express my sincerest gratitude to those who made this research possible; Ocean Restoration Corporation Associates (ORCA), the Link Foundation, and Florida Atlantic University (FAU) for their financial fellowships, and for the many hands that played a part in getting it all done. A special thank you goes to my committee members; Dr. James X. Hartmann (chairperson) and Dr. David Binninger of FAU, Dr. Ed Proffitt and Dr. John Scarpa of Harbor Branch Oceanographic Institute at FAU, and Dr. Ray Waldner of Palm Beach Atlantic University. You were all such an integral part of helping me achieve this goal. Special thanks also go to my friend Karen Halloway- Adkins who was always willing to help locate specimens and provide equipment when she had it. Mike Calinski of ORCA made trips from the Gulf Coast to deliver specimens to me. Sherry Reed of the Smithsonian Marine Station in Ft. Pierce was extremely helpful by keeping an eye out for the tunicates and at times gathering them for me. Dr. Patricia Keating was invaluable for her help in flow-cytometry analysis. Dr. Peter McCarthy of Harbor Branch Oceanographic Institute at FAU provided the bacteria for the filtration rate experiment. -
1471-2148-9-187.Pdf
BMC Evolutionary Biology BioMed Central Research article Open Access An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Georgia Tsagkogeorga1,2, Xavier Turon3, Russell R Hopcroft4, Marie- Ka Tilak1,2, Tamar Feldstein5, Noa Shenkar5,6, Yossi Loya5, Dorothée Huchon5, Emmanuel JP Douzery1,2 and Frédéric Delsuc*1,2 Address: 1Université Montpellier 2, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 2CNRS, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 3Centre d'Estudis Avançats de Blanes (CEAB, CSIC), Accés Cala S. Francesc 14, 17300 Blanes (Girona), Spain, 4Institute of Marine Science, University of Alaska Fairbanks, Fairbanks, Alaska, USA, 5Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, Israel and 6Department of Biology, University of Washington, Seattle WA 98195, USA Email: Georgia Tsagkogeorga - [email protected]; Xavier Turon - [email protected]; Russell R Hopcroft - [email protected]; Marie-Ka Tilak - [email protected]; Tamar Feldstein - [email protected]; Noa Shenkar - [email protected]; Yossi Loya - [email protected]; Dorothée Huchon - [email protected]; Emmanuel JP Douzery - [email protected]; Frédéric Delsuc* - [email protected] * Corresponding author Published: 5 August 2009 Received: 16 October 2008 Accepted: 5 August 2009 BMC Evolutionary Biology 2009, 9:187 doi:10.1186/1471-2148-9-187 This article is available from: http://www.biomedcentral.com/1471-2148/9/187 © 2009 Tsagkogeorga et al; licensee BioMed Central Ltd. -
Development and Application of a Quantitative Real-Time PCR Assay for the Globally Invasive Tunicate Styela Clava
Management of Biological Invasions (2014) Volume 5, Issue 2: 133–142 doi: http://dx.doi.org/10.3391/mbi.2014.5.2.06 Open Access © 2014 The Author(s). Journal compilation © 2014 REABIC Research Article Development and application of a quantitative real-time PCR assay for the globally invasive tunicate Styela clava Joanne E. Gillum1, Laura Jimenez1, Daniel J. White1,2, Sharyn J. Goldstien3 and Neil J. Gemmell1* 1Allan Wilson Centre for Molecular Ecology and Evolution, Dept. of Anatomy, University of Otago, PO Box 913, Dunedin 9054, New Zealand 2Biodiversity and Conservation, Landcare Research New Zealand, Auckland 1072, New Zealand 3School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, New Zealand E-mail: [email protected] (JEG), [email protected] (LJ), WhiteD@[email protected] (DJW), [email protected] (SJG), [email protected] (NJG) *Corresponding author Received: 1 October 2013 / Accepted: 29 April 2014 / Published online: 6 June 2014 Handling editor: Richard Piola Abstract Styela clava Herdman, 1881, is a solitary ascidian native to the Northwest Pacific, which has spread globally over the past 90 years, reaching pest levels and causing concern to the aquaculture industry in some regions. It has a relatively short-lived larval stage, spending only limited time in the water column before settling on a desirable substrate. Early detection of this species is an important step in both the prevention of its spread and of successful eradication. Here we report the development of a qPCR based assay, targeted to a region of the mitochondrial cytochrome oxidase I gene, using TaqMan® MGB, for the early identification of S. -
Marine Biology
Marine Biology Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. --Manuscript Draft-- Manuscript Number: MABI-D-16-00297 Full Title: Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. Article Type: S.I. : Invasive Species Keywords: ascidians, biofouling, biogeography, marine invasions, nonindigenous, non-native species, North America Corresponding Author: Christina Simkanin, Phd Smithsonian Environmental Research Center Edgewater, MD UNITED STATES Corresponding Author Secondary Information: Corresponding Author's Institution: Smithsonian Environmental Research Center Corresponding Author's Secondary Institution: First Author: Christina Simkanin, Phd First Author Secondary Information: Order of Authors: Christina Simkanin, Phd Paul W. Fofonoff Kristen Larson Gretchen Lambert Jennifer Dijkstra Gregory M. Ruiz Order of Authors Secondary Information: Funding Information: California Department of Fish and Wildlife Dr. Gregory M. Ruiz National Sea Grant Program Dr. Gregory M. Ruiz Prince William Sound Regional Citizens' Dr. Gregory M. Ruiz Advisory Council Smithsonian Institution Dr. Gregory M. Ruiz United States Coast Guard Dr. Gregory M. Ruiz United States Department of Defense Dr. Gregory M. Ruiz Legacy Program Abstract: SSpecies introductions have increased dramatically in number, rate, and magnitude of impact in recent decades. In marine systems, invertebrates are the largest and most diverse component of coastal invasions throughout the world. Ascidians are conspicuous and well-studied members of this group, however, much of what is known about their invasion history is limited to particular species or locations. Here, we provide a large-scale assessment of invasions, using an extensive literature review and standardized field surveys, to characterize the invasion dynamics of non-native ascidians in the continental United States and Alaska.