Evolution of Remarkable Structural Novelties in Its Jaws and External Genitalia^
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Phallostethus Cuulong, a New Species of Priapiumfish (Actinopterygii: Atheriniformes: Phallostethidae) from the Vietnamese Mekong
Zootaxa 3363: 45–51 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2012 · Magnolia Press ISSN 1175-5334 (online edition) Phallostethus cuulong, a new species of priapiumfish (Actinopterygii: Atheriniformes: Phallostethidae) from the Vietnamese Mekong KOICHI SHIBUKAWA1, DINH DAC TRAN2 & LOI XUAN TRAN2 1Nagao Natural Environment Foundation, 3-10-10 Shitaya, Taito-ku, Tokyo 110-0004, Japan. E-mail: [email protected] 2College of Aquaculture and Fisheries, Can Tho University, 3-2 Street, Can Tho, Vietnam. E-mail: [email protected]; [email protected] Abstract A new species of priapiumfish, Phallostethus cuulong, is described based on nine specimens collected from the Vietnam- ese Mekong. This is the third species of the genus, following the type species P. dunckeri (from Malay peninsula) and P. lehi (from northwestern Borneo), and distinguished from them by having: seven serrae on the second ctenactinium in adult males (vs. five in P. dunckeri and eight in P. le h i); 25–26 caudal vertebrae (vs. 27 in P. dunckeri and 28 in P. le h i ); approx- imately 5–19 teeth on paradentary (vs. 15–20 and 28 or more in P. dunckeri and P. le h i, respectively). All six examined males are dextral (vs. one and two known males are sinistral and dextral respectively in P. dunckeri, and all four know males are sinistral in P. le h i ). Sexual dimorphism is also found in the number of precaudal vertebrae, i.e., 13–14 in males and 11–12 in females (vs. sexual dimorphism is not found in number of precaudal vertebrae of P. -
Multi-Locus Fossil-Calibrated Phylogeny of Atheriniformes (Teleostei, Ovalentaria)
Molecular Phylogenetics and Evolution 86 (2015) 8–23 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Multi-locus fossil-calibrated phylogeny of Atheriniformes (Teleostei, Ovalentaria) Daniela Campanella a, Lily C. Hughes a, Peter J. Unmack b, Devin D. Bloom c, Kyle R. Piller d, ⇑ Guillermo Ortí a, a Department of Biological Sciences, The George Washington University, Washington, DC, USA b Institute for Applied Ecology, University of Canberra, Australia c Department of Biology, Willamette University, Salem, OR, USA d Department of Biological Sciences, Southeastern Louisiana University, Hammond, LA, USA article info abstract Article history: Phylogenetic relationships among families within the order Atheriniformes have been difficult to resolve Received 29 December 2014 on the basis of morphological evidence. Molecular studies so far have been fragmentary and based on a Revised 21 February 2015 small number taxa and loci. In this study, we provide a new phylogenetic hypothesis based on sequence Accepted 2 March 2015 data collected for eight molecular markers for a representative sample of 103 atheriniform species, cover- Available online 10 March 2015 ing 2/3 of the genera in this order. The phylogeny is calibrated with six carefully chosen fossil taxa to pro- vide an explicit timeframe for the diversification of this group. Our results support the subdivision of Keywords: Atheriniformes into two suborders (Atherinopsoidei and Atherinoidei), the nesting of Notocheirinae Silverside fishes within Atherinopsidae, and the monophyly of tribe Menidiini, among others. We propose taxonomic Marine to freshwater transitions Marine dispersal changes for Atherinopsoidei, but a few weakly supported nodes in our phylogeny suggests that further Molecular markers study is necessary to support a revised taxonomy of Atherinoidei. -
The Etyfish Project © Christopher Scharpf and Kenneth J
ATHERINIFORMES (part 2) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 4.0 - 9 Dec. 2019 Order ATHERINIFORMES (part 2 of 2) Family BEDOTIIDAE Malagasy Rainbowfishes 2 genera · 16 species Bedotia Regan 1903 -ia, belonging to: Maurice Bedot (1859-1927), director of the Geneva Natural History Museum (where holotype of type species B. madagascariensis is housed) and editor of journal in which description appeared Bedotia albomarginata Sparks & Rush 2005 albus, white; marginatus, edged or bordered, referring to characteristic white marginal stripes on second dorsal fin and anal fin Bedotia alveyi Jones, Smith & Sparks 2010 in honor of Mark Alvey (b. 1955), Field Museum (Chicago, Illinois, USA), for his “tremendous” efforts to promote natural history research and species discovery during his tenure as Administrative Director of Academic Affairs Bedotia geayi Pellegrin 1907 in honor of pharmacist and natural history collector Martin François Geay (1859-1910), who collected type Bedotia leucopteron Loiselle & Rodriguez 2007 leukos, white; pteron, fin, referring to iridescent-white fin coloration particularly evident in adult male Bedotia longianalis Pellegrin 1914 longus, long; analis, anal, referring to more anal-fin rays (19) compared to the similar B. geayi (14-17) Bedotia madagascariensis Regan 1903 -ensis, suffix denoting place: Madagascar, where it (and entire family) is endemic Bedotia marojejy Stiassny & Harrison 2000 named for Parc national de Marojejy, northeastern Madagascar, type locality Bedotia masoala Sparks 2001 named for Masoala Peninsula of northeastern Madagascar, where this species appears to be endemic Bedotia tricolor Pellegrin 1932 tri-, three, referring to anal-fin coloration of adults, “three equal parallel bands: black, yellow, red, exactly reproducing the Belgian flag” (translation) Rheocles Jordan & Hubbs 1919 etymology not explained, presumably rheos, current or stream, referring to occurrence of R. -
Evolutionary History and Whole Genome Sequence of Pejerrey (Odontesthes Bonariensis): New Insights Into Sex Determination in Fishes
Evolutionary History and Whole Genome Sequence of Pejerrey (Odontesthes bonariensis): New Insights into Sex Determination in Fishes by Daniela Campanella B.Sc. in Biology, July 2009, Universidad Nacional de La Plata, Argentina A Dissertation submitted to The Faculty of The Columbian College of Arts and Sciences of The George Washington University in partial fulfillment of the requirements for the degree of Doctor of Philosophy January 31, 2015 Dissertation co-directed by Guillermo Ortí Louis Weintraub Professor of Biology Elisabet Caler Program Director at National Heart, Lung and Blood Institute, NIH The Columbian College of Arts and Sciences of The George Washington University certifies that Daniela Campanella has passed the Final Examination for the degree of Doctor of Philosophy as of December 12th, 2014. This is the final and approved form of the dissertation. Evolutionary History and Whole Genome Sequence of Pejerrey (Odontesthes bonariensis): New Insights into Sex Determination in Fishes Daniela Campanella Dissertation Research Committee: Guillermo Ortí, Louis Weintraub Professor of Biology, Dissertation Co-Director Elisabet Caler, Program Director at National Heart, Lung and Blood Institute, NIH, Dissertation Co-Director Hernán Lorenzi, Assistant Professor in Bioinformatics Department, J. Craig Venter Institute Rockville Maryland, Committee Member Jeremy Goecks, Assistant Professor of Computational Biology, Committee Member ! ""! ! Copyright 2015 by Daniela Campanella All rights reserved ! """! Dedication The author wishes to dedicate this dissertation to: My love, Ford, for his unconditional support and inspiration. For teaching me that admiration towards each other’s work is the fundamental fuel to go anywhere. My family and friends, for being there, meaning “there” everywhere and whenever. My grandpa Hugo, a pejerrey lover who knew how to fish, cook and enjoy the “silver arrows”. -
HANDBOOK of FISH BIOLOGY and FISHERIES Volume 1 Also Available from Blackwell Publishing: Handbook of Fish Biology and Fisheries Edited by Paul J.B
HANDBOOK OF FISH BIOLOGY AND FISHERIES Volume 1 Also available from Blackwell Publishing: Handbook of Fish Biology and Fisheries Edited by Paul J.B. Hart and John D. Reynolds Volume 2 Fisheries Handbook of Fish Biology and Fisheries VOLUME 1 FISH BIOLOGY EDITED BY Paul J.B. Hart Department of Biology University of Leicester AND John D. Reynolds School of Biological Sciences University of East Anglia © 2002 by Blackwell Science Ltd a Blackwell Publishing company Chapter 8 © British Crown copyright, 1999 BLACKWELL PUBLISHING 350 Main Street, Malden, MA 02148‐5020, USA 108 Cowley Road, Oxford OX4 1JF, UK 550 Swanston Street, Carlton, Victoria 3053, Australia The right of Paul J.B. Hart and John D. Reynolds to be identified as the Authors of the Editorial Material in this Work has been asserted in accordance with the UK Copyright, Designs, and Patents Act 1988. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, except as permitted by the UK Copyright, Designs, and Patents Act 1988, without the prior permission of the publisher. First published 2002 Reprinted 2004 Library of Congress Cataloging‐in‐Publication Data has been applied for. Volume 1 ISBN 0‐632‐05412‐3 (hbk) Volume 2 ISBN 0‐632‐06482‐X (hbk) 2‐volume set ISBN 0‐632‐06483‐8 A catalogue record for this title is available from the British Library. Set in 9/11.5 pt Trump Mediaeval by SNP Best‐set Typesetter Ltd, Hong Kong Printed and bound in the United Kingdom by TJ International Ltd, Padstow, Cornwall. -
A New Species of Neostethus(Teleostei
RAFFLES BULLETIN OF ZOOLOGY 2014 Taxonomy & Systematics RAFFLES BULLETIN OF ZOOLOGY 62: 175–187 Date of publication: 4 April 2014 http://zoobank.org/urn:lsid:zoobank.org:pub:51117AFB-1F21-4735-A4DE-01AC0B7509C5 A new species of Neostethus (Teleostei; Atherinomorpha; Phallostethidae) from Brunei Darussalam, with comments on northwestern Borneo as an area of endemism Lynne R. Parenti Abstract. Extensive collections of freshwater and coastal fi shes from throughout northwestern Borneo reveal a distinct phallostethid biota. Seven of the 23 species in the phallostethid subfamily Phallostethinae, known commonly as priapiumfi shes, live in northwestern Borneo and of those, three are endemics, including the new species described herein. Neostethus geminus, new species, is most closely related to N. bicornis Regan, 1916 with which it shares two, elongate curved ctenactinia (vs. one elongate and one short ctenactinium as in other Neostethus) in mature males, a brown blotch on the pelvic-fi n rays of the proctal side of immature males, and a fl eshy, hoodlike fold in females that includes the anus and genital and urinary pores. Neostethus geminus differs from N. bicornis in being smaller (adults reach no more than 25.7 mm SL vs. 31 mm SL), and in having males with a relatively compact priapium with a foreshortened, broad aproctal axial bone that meets but does not overlap the pulvinular appendage (vs. a relatively elongate priapium with a long and narrow aproctal axial bone that overlaps the pulvinular appendage medially) and thin, nearly translucent, broad papillary bone expanded distally into a tab (vs. having a short papillary bone). Females have a thickened fl eshy, hoodlike fold that includes the anus, genital pore and urinary pore (vs. -
Bayesian Node Dating Based on Probabilities of Fossil Sampling Supports Trans-Atlantic Dispersal of Cichlid Fishes
Supporting Information Bayesian Node Dating based on Probabilities of Fossil Sampling Supports Trans-Atlantic Dispersal of Cichlid Fishes Michael Matschiner,1,2y Zuzana Musilov´a,2,3 Julia M. I. Barth,1 Zuzana Starostov´a,3 Walter Salzburger,1,2 Mike Steel,4 and Remco Bouckaert5,6y Addresses: 1Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway 2Zoological Institute, University of Basel, Basel, Switzerland 3Department of Zoology, Faculty of Science, Charles University in Prague, Prague, Czech Republic 4Department of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand 5Department of Computer Science, University of Auckland, Auckland, New Zealand 6Computational Evolution Group, University of Auckland, Auckland, New Zealand yCorresponding author: E-mail: [email protected], [email protected] 1 Supplementary Text 1 1 Supplementary Text Supplementary Text S1: Sequencing protocols. Mitochondrial genomes of 26 cichlid species were amplified by long-range PCR followed by the 454 pyrosequencing on a GS Roche Junior platform. The primers for long-range PCR were designed specifically in the mitogenomic regions with low interspecific variability. The whole mitogenome of most species was amplified as three fragments using the following primer sets: for the region between position 2 500 bp and 7 300 bp (of mitogenome starting with tRNA-Phe), we used forward primers ZM2500F (5'-ACG ACC TCG ATG TTG GAT CAG GAC ATC C-3'), L2508KAW (Kawaguchi et al. 2001) or S-LA-16SF (Miya & Nishida 2000) and reverse primer ZM7350R (5'-TTA AGG CGT GGT CGT GGA AGT GAA GAA G-3'). The region between 7 300 bp and 12 300 bp was amplified using primers ZM7300F (5'-GCA CAT CCC TCC CAA CTA GGW TTT CAA GAT GC-3') and ZM12300R (5'-TTG CAC CAA GAG TTT TTG GTT CCT AAG ACC-3'). -
Relationships of Atherinomorph Fishes (Teleostei)
BULLETIN OF MARINE SCIENCE. 52(1): 170-196. 1993 RELATIONSHIPS OF ATHERINOMORPH FISHES (TELEOSTEI) Lynne R. Parenti ABSTRACT Atherinomorphs have been recognized since 1964 as a group of teleost fishes comprising silvcrsidcs, phallostethids. killifishes, ricefishes, halfbeaks, needlefishes, flying fishes, and sauries. Atherinomorphs are diagnosed as monophyletic by derived characters of the testis, egg, reproductive behavior, circulatory system, ethmoid region of the skull, gill arches, pelvic girdle, jaw musculature, olfactory organ, and inferred reductions in the infraorbital series and some other bones. Monophyly ofkillifishes (Cyprinodontiformes), rice fishes and exocoetoids (Beloniformes), and Division II atherinomorphs (Cyprinodontiformes plus Beloniformes) is well-supported. Atherinoids (silversides plus phallostethids) are considered paraphyletic. One cladistic interpretation of character distribution among selected ctenosquamate teleosts sup- ports the hypothesis that atherinomorphs are the sister group of some or all paracanthop- terygian fishes. However, corroboration of an atherinomorph sister group, and modification of atherinomorph membership. requires more precise definition of derived characters (i.e., better statement of homology) and continued surveys of characters, such as testis structure, in outgroup taxa. The Atherinomorpha, comprising teleost fishes commonly known in English as silversides, phallostethids, killifishes, halfbeaks, needlefishes, flying fishes, and sauries, were first recognized and classified by Rosen -
Campanella Et Al 2015 Atheri
Molecular Phylogenetics and Evolution 86 (2015) 8–23 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Multi-locus fossil-calibrated phylogeny of Atheriniformes (Teleostei, Ovalentaria) Daniela Campanella a, Lily C. Hughes a, Peter J. Unmack b, Devin D. Bloom c, Kyle R. Piller d, ⇑ Guillermo Ortí a, a Department of Biological Sciences, The George Washington University, Washington, DC, USA b Institute for Applied Ecology, University of Canberra, Australia c Department of Biology, Willamette University, Salem, OR, USA d Department of Biological Sciences, Southeastern Louisiana University, Hammond, LA, USA article info abstract Article history: Phylogenetic relationships among families within the order Atheriniformes have been difficult to resolve Received 29 December 2014 on the basis of morphological evidence. Molecular studies so far have been fragmentary and based on a Revised 21 February 2015 small number taxa and loci. In this study, we provide a new phylogenetic hypothesis based on sequence Accepted 2 March 2015 data collected for eight molecular markers for a representative sample of 103 atheriniform species, cover- Available online 10 March 2015 ing 2/3 of the genera in this order. The phylogeny is calibrated with six carefully chosen fossil taxa to pro- vide an explicit timeframe for the diversification of this group. Our results support the subdivision of Keywords: Atheriniformes into two suborders (Atherinopsoidei and Atherinoidei), the nesting of Notocheirinae Silverside fishes within Atherinopsidae, and the monophyly of tribe Menidiini, among others. We propose taxonomic Marine to freshwater transitions Marine dispersal changes for Atherinopsoidei, but a few weakly supported nodes in our phylogeny suggests that further Molecular markers study is necessary to support a revised taxonomy of Atherinoidei. -
A Phylogenetic and Biogeographic Analysis of Cyprinodontiform Fishes (Teleostei, Atherinomorpha)
A PHYLOGENETIC AND BIOGEOGRAPHIC ANALYSIS OF CYPRINODONTIFORM FISHES (TELEOSTEI, ATHERINOMORPHA) LYNNE R. PARENT] BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY VOLUME 168 : ARTICLE 1 NEW YORK : 1981 A PHYLOGENETIC AND BIOGEOGRAPHIC ANALYSIS OF CYPRINODONTIFORM FISHES (TELEOSTEI, ATHERINOMORPHA) LYNNE R. PARENTI Department of Ichthyology American Museum of Natural History SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN THE FACULTY IN BIOLOGY OF THE CITY UNIVERSITY OF NEW YORK BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY VOLUME 168 : ARTICLE 4 NEW YORK : 1981 BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY Volume 168, article 4, pages 335-557, figures 1-99, tables 1-3 Issued September 3, 1981 Price: $14.35 a copy ISSN 0003-0090 This article completes Volume 168. Copyright © American Museum of Natural History 1981 CONTENTS Abstract 341 Introduction 341 Acknowledgments 344 Methods 346 Overview of Past Internal Classifications of Cyprinodontiform Fishes 349 Derived Characters of Cyprinodontiforms 354 Phylogenetic Analysis 365 Aplocheiloids (Group B) 367 Neotropical Aplocheiloids 375 Cladistic Summary of Neotropical Aplocheiloids 385 Old World Aplocheiloids 386 The Aphyosemion-Nothobranchius Group 389 The Aplocheilus-Pachypanchax-Epiplatys Group 394 Cladistic Summary of Old World Aplocheiloids 396 Cyprinodontoids (Group C) 397 Relationships of the Cyprinodontoids 404 Internal Fertilization and Viviparity 429 Cladistic Summary of the Cyprinodontoids 443 Group D 443 Fundulines 443 Group -
Family-Group Names of Recent Fishes
Zootaxa 3882 (2): 001–230 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Monograph ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3882.1.1 http://zoobank.org/urn:lsid:zoobank.org:pub:03E154FD-F167-4667-842B-5F515A58C8DE ZOOTAXA 3882 Family-group names of Recent fishes RICHARD VAN DER LAAN1,5, WILLIAM N. ESCHMEYER2 & RONALD FRICKE3,4 1Grasmeent 80, 1357JJ Almere, The Netherlands. E-mail: [email protected] 2Curator Emeritus, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA 94118, USA. E-mail: [email protected] 3Im Ramstal 76, 97922 Lauda-Königshofen, Germany. E-mail: [email protected] 4Staatliches Museum für Naturkunde Stuttgart, Rosenstein 1, D-70191 Stuttgart, Germany [temporarily out of office] 5Corresponding author Magnolia Press Auckland, New Zealand Accepted by L. Page: 6 Sept. 2014; published: 11 Nov. 2014 Licensed under a Creative Commons Attribution License http://creativecommons.org/licenses/by/3.0 RICHARD VAN DER LAAN, WILLIAM N. ESCHMEYER & RONALD FRICKE Family-group names of Recent fishes (Zootaxa 3882) 230 pp.; 30 cm. 11 Nov. 2014 ISBN 978-1-77557-573-3 (paperback) ISBN 978-1-77557-574-0 (Online edition) FIRST PUBLISHED IN 2014 BY Magnolia Press P.O. Box 41-383 Auckland 1346 New Zealand e-mail: [email protected] http://www.mapress.com/zootaxa/ © 2014 Magnolia Press 2 · Zootaxa 3882 (1) © 2014 Magnolia Press VAN DER LAAN ET AL. Table of contents Abstract . .3 Introduction . .3 Methods . .5 Rules for the family-group names and how we dealt with them . .6 How to use the family-group names list .