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CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Influence of the Seasonal Thermocline on the Vertical Distribution of Larval Fish Assemblages Associated with Atlantic Bluefin T
Article Influence of the Seasonal Thermocline on the Vertical Distribution of Larval Fish Assemblages Associated with Atlantic Bluefin Tuna Spawning Grounds Itziar Alvarez 1,* , Leif K. Rasmuson 2,3,4 , Trika Gerard 2,5, Raul Laiz-Carrion 6, Manuel Hidalgo 1, John T. Lamkin 2, Estrella Malca 2,3, Carmen Ferra 7, Asvin P. Torres 8, Diego Alvarez-Berastegui 9 , Francisco Alemany 1, Jose M. Quintanilla 6, Melissa Martin 1, Jose M. Rodriguez 10 and Patricia Reglero 1 1 Ecosystem’s Oceanography Group (GRECO), Instituto Español de Oceanografía, Centre Oceanogràfic de les Balears, 07015 Palma de Mallorca, Spain; [email protected] (M.H.); [email protected] (F.A.); [email protected] (M.M.); [email protected] (P.R.) 2 NOAA, National Marine Fisheries Service, Southeast Fisheries Science Center, 75 Virginia Beach Drive, Miami, FL 33149, USA; [email protected] (L.K.R.); [email protected] (T.G.); [email protected] (J.T.L.); [email protected] (E.M.) 3 Cooperative Institute for Marine and Atmospheric Studies (CIMAS), University of Miami, Miami, FL 33149, USA 4 Marine Resources Program, Oregon Department of Fish and Wildlife, 2040 SE Marine Science Drive, Newport, OR 97365, USA 5 South Florida Campus, University of Phoenix, Miramar, FL 33027, USA 6 Instituto Español de Oceanografía—Centro Oceanográfico de Málaga (COM-IEO), 29640 Fuengirola, Spain; [email protected] (R.L.-C.); [email protected] (J.M.Q.) 7 National Research Council (CNR), Institute for Biological Resources and Marine Biotechnologies (IRBIM), 98122 Ancona, Italy; [email protected] Citation: Alvarez, I.; Rasmuson, L.K.; 8 Direcció General de Pesca i Medi Marí, Balearic Islands Government (GOIB), 07009 Palma, Spain; Gerard, T.; Laiz-Carrion, R.; Hidalgo, [email protected] M.; Lamkin, J.T.; Malca, E.; Ferra, C.; 9 Balearic Islands Coastal Observing and Forecasting System, Parc Bit, Naorte, Bloc A 2-3, Torres, A.P.; Alvarez-Berastegui, D.; 07121 Palma de Mallorca, Spain; [email protected] et al. -
A Framework of Ichthyofaunal Ecostratigraphy of the Oligocene–Early Miocene Strata of the Polish Outer Carpathian Basin
Annales Societatis Geologorum Poloniae (2006), vol. 76: 1–111. A FRAMEWORK OF ICHTHYOFAUNAL ECOSTRATIGRAPHY OF THE OLIGOCENE–EARLY MIOCENE STRATA OF THE POLISH OUTER CARPATHIAN BASIN Janusz KOTLARCZYK1, Anna JERZMAÑSKA2, Ewa ŒWIDNICKA2 & Teresa WISZNIOWSKA2 1 Department of General and Mathematical Geology, AGH University of Science and Technology, Al. Mickiewicza 30, 30-059 Kraków, Poland 2 Department of Palaeozoology, Institute of Zoology, University of Wroc³aw, Sienkiewicza, 21, 50-335 Wroc³aw, Poland Kotlarczyk, J., Jerzmañska, A., Œwidnicka, E. & Wiszniowska, T., 2006. A framework of ichthyofaunal ecostrati- graphy of the Oligocene–Early Miocene strata of the Polish Outer Carpathian basin. Annales Societatis Geologorum Poloniae, 76: 1–111. Abstract: The paper presents the results of an analysis of ichthyofaunal variability throughout the section of the Menilite-Krosno Series (MKS) in the Outer Carpathians of Poland. The studied tanathocoenoses were formed at the bottom of a more than 2,000 m deep northern basin of the Tethys, being largely represented by the continental rise and bottoms of its narrow furrows, and – to a lesser degree – the continental slope and slopes of a submarine high. Lateral variability of statististically representative assemblages of tanathocoenoses hosted in thin, isochro- nous horizons is interpreted as a result of both local changes of ichthyocoenoses and the influence of post-mortem relocation of fishes that mainly dwelled the shelf and upper continental slope. Vertical variability, in turn, is considered as a resulting from changeable conditions of the ecological environment, the input and outflow of taxa whose evolution proceeded in the Indo-Pacific area, and the species extinction. Changeability of ichthyofauna within a ca. -
A Dataset of Deep-Sea Fishes Surveyed by Research Vessels in the Waters Around Taiwan
A peer-reviewed open-access journal ZooKeys 466:A Dataset 103–110 of(2014) Deep-Sea Fishes Surveyed by Research Vessels in the Waters around Taiwan 103 doi: 10.3897/zookeys.466.8523 DATA PAPER http://zookeys.pensoft.net Launched to accelerate biodiversity research A Dataset of Deep-Sea Fishes Surveyed by Research Vessels in the Waters around Taiwan Kwang-Tsao Shao1, Jack Lin1, Hsin-Ming Yeh2, Mao-Yin Lee1, Lee-Sea Chen1, Hen-Wei Lin1 1 Biodiversity Research Center, Academia Sinica, No. 128, Sec. 2, Academia Rd. Nankang Dist., 115, Taipei, TAIWAN 2 Coastal and Offshore Resources Research Center, Fisheries Research Institute, COA, No.6, Yugang N. 3rd Rd., Qianzhen Dist., 806, Kaohsiung City, TAIWAN Corresponding authors: Jack Lin ([email protected]); Hsin-Ming Yeh ([email protected]) Academic editor: L. Penev | Received 29 August 2014 | Accepted 1 December 2014 | Published 19 December 2014 http://zoobank.org/083BACA5-921D-4C9D-8243-5CDC40F66C43 Citation: Shao K-T, Lin J, Yeh H-M, Lee M-Y, Chen L-S, Lin H-W (2014) A Dataset of Deep-Sea Fishes Surveyed by Research Vessels in the Waters around Taiwan. ZooKeys 466: 103–110. doi: 10.3897/zookeys.466.8523 Abstract The study of deep-sea fish fauna is hampered by a lack of data due to the difficulty and high cost incurred in its surveys and collections. Taiwan is situated along the edge of the Eurasia plate, at the junction of three Large Marine Ecosystems or Ecoregions of the East China Sea, South China Sea and the Philippines. As nearly two-thirds of its surrounding marine ecosystems are deep-sea environments, Taiwan is expected to hold a rich diversity of deep-sea fish. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
New Zealand Fishes a Field Guide to Common Species Caught by Bottom, Midwater, and Surface Fishing Cover Photos: Top – Kingfish (Seriola Lalandi), Malcolm Francis
New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing Cover photos: Top – Kingfish (Seriola lalandi), Malcolm Francis. Top left – Snapper (Chrysophrys auratus), Malcolm Francis. Centre – Catch of hoki (Macruronus novaezelandiae), Neil Bagley (NIWA). Bottom left – Jack mackerel (Trachurus sp.), Malcolm Francis. Bottom – Orange roughy (Hoplostethus atlanticus), NIWA. New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing New Zealand Aquatic Environment and Biodiversity Report No: 208 Prepared for Fisheries New Zealand by P. J. McMillan M. P. Francis G. D. James L. J. Paul P. Marriott E. J. Mackay B. A. Wood D. W. Stevens L. H. Griggs S. J. Baird C. D. Roberts‡ A. L. Stewart‡ C. D. Struthers‡ J. E. Robbins NIWA, Private Bag 14901, Wellington 6241 ‡ Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6011Wellington ISSN 1176-9440 (print) ISSN 1179-6480 (online) ISBN 978-1-98-859425-5 (print) ISBN 978-1-98-859426-2 (online) 2019 Disclaimer While every effort was made to ensure the information in this publication is accurate, Fisheries New Zealand does not accept any responsibility or liability for error of fact, omission, interpretation or opinion that may be present, nor for the consequences of any decisions based on this information. Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries website at http://www.mpi.govt.nz/news-and-resources/publications/ A higher resolution (larger) PDF of this guide is also available by application to: [email protected] Citation: McMillan, P.J.; Francis, M.P.; James, G.D.; Paul, L.J.; Marriott, P.; Mackay, E.; Wood, B.A.; Stevens, D.W.; Griggs, L.H.; Baird, S.J.; Roberts, C.D.; Stewart, A.L.; Struthers, C.D.; Robbins, J.E. -
Persistent Near-Bottom Aggregations of Mesopelagic Animals Along the North Carolina and Virginia Continental Slopes John V
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln USGS Staff -- ubP lished Research US Geological Survey 11-23-2007 Persistent near-bottom aggregations of mesopelagic animals along the North Carolina and Virginia continental slopes John V. Gartner Jr. Natural Science Department SP/G, [email protected] Kenneth J. Sulak Florida Integrated Science Center, US Geological Survey,, [email protected] Steve W. Ross Center for Marine Science, University of North Carolina, [email protected] Ann Marie Necaise Center for Marine Science, University of North Carolina Follow this and additional works at: http://digitalcommons.unl.edu/usgsstaffpub Part of the Geology Commons, Oceanography and Atmospheric Sciences and Meteorology Commons, Other Earth Sciences Commons, and the Other Environmental Sciences Commons Gartner, John V. Jr.; Sulak, Kenneth J.; Ross, Steve W.; and Necaise, Ann Marie, "Persistent near-bottom aggregations of mesopelagic animals along the North Carolina and Virginia continental slopes" (2007). USGS Staff -- Published Research. 1064. http://digitalcommons.unl.edu/usgsstaffpub/1064 This Article is brought to you for free and open access by the US Geological Survey at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in USGS Staff -- ubP lished Research by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Mar Biol (2008) 153:825–841 DOI 10.1007/s00227-007-0855-1 RESEARCH ARTICLE Persistent near-bottom aggregations of mesopelagic animals -
Large-Scale Spatial and Temporal Variability of Larval Fish Assemblages in the Tropical Atlantic Ocean
Anais da Academia Brasileira de Ciências (2019) 91(1): e20170567 (Annals of the Brazilian Academy of Sciences) Printed version ISSN 0001-3765 / Online version ISSN 1678-2690 http://dx.doi.org/10.1590/0001-3765201820170567 www.scielo.br/aabc | www.fb.com/aabcjournal Large-Scale Spatial and Temporal Variability of Larval Fish Assemblages in the Tropical Atlantic Ocean CHRISTIANE S. DE SOUZA and PAULO O. MAFALDA JUNIOR Universidade Federal da Bahia, Instituto de Biologia, Laboratório de Plâncton, Rua Ademar de Barros, s/n, Ondina, 40210-020 Salvador, BA, Brazil Manuscript received on July 28, 2017; accepted for publication on April 30, 2018 How to cite: SOUZA CS AND JUNIOR POM. 2019. Large-Scale Spatial and Temporal Variability of Larval Fish Assemblages in the Tropical Atlantic Ocean. An Acad Bras Cienc 91: e20170567. DOI 10.1590/0001- 3765201820170567. Abstract: This study investigated the large-scale spatial and temporal variability of larval fish assemblages in the west tropical Atlantic Ocean. The sampling was performed during four expeditions. Identification resulted in 100 taxa (64 families, 19 orders and 17 suborders). During the four periods, 80% of the total larvae taken represented eight characteristics families (Scombridae, Carangidae, Paralepididae, Bothidae, Gonostomatidae, Scaridae, Gobiidae and Myctophidae). Fish larvae showed a rather heterogeneous distribution with density at each station ranging from 0.5 to 2000 larvae per 100m3. A general trend was observed, lower densities at oceanic area and higher densities in the seamounts and islands. A gradient in temperature, salinity, phytoplankton biomass, zooplankton biomass and station depth was strongly correlated with changes in ichthyoplankton structure. Myctophidae, and Paralepididae presented increased abundance at high salinities and temperatures. -
Marine Fishes of the Azores: an Annotated Checklist and Bibliography
MARINE FISHES OF THE AZORES: AN ANNOTATED CHECKLIST AND BIBLIOGRAPHY. RICARDO SERRÃO SANTOS, FILIPE MORA PORTEIRO & JOÃO PEDRO BARREIROS SANTOS, RICARDO SERRÃO, FILIPE MORA PORTEIRO & JOÃO PEDRO BARREIROS 1997. Marine fishes of the Azores: An annotated checklist and bibliography. Arquipélago. Life and Marine Sciences Supplement 1: xxiii + 242pp. Ponta Delgada. ISSN 0873-4704. ISBN 972-9340-92-7. A list of the marine fishes of the Azores is presented. The list is based on a review of the literature combined with an examination of selected specimens available from collections of Azorean fishes deposited in museums, including the collection of fish at the Department of Oceanography and Fisheries of the University of the Azores (Horta). Personal information collected over several years is also incorporated. The geographic area considered is the Economic Exclusive Zone of the Azores. The list is organised in Classes, Orders and Families according to Nelson (1994). The scientific names are, for the most part, those used in Fishes of the North-eastern Atlantic and the Mediterranean (FNAM) (Whitehead et al. 1989), and they are organised in alphabetical order within the families. Clofnam numbers (see Hureau & Monod 1979) are included for reference. Information is given if the species is not cited for the Azores in FNAM. Whenever available, vernacular names are presented, both in Portuguese (Azorean names) and in English. Synonyms, misspellings and misidentifications found in the literature in reference to the occurrence of species in the Azores are also quoted. The 460 species listed, belong to 142 families; 12 species are cited for the first time for the Azores. -
Humboldt Bay Fishes
Humboldt Bay Fishes ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> ·´¯`·._.·´¯`·.. ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> Acknowledgements The Humboldt Bay Harbor District would like to offer our sincere thanks and appreciation to the authors and photographers who have allowed us to use their work in this report. Photography and Illustrations We would like to thank the photographers and illustrators who have so graciously donated the use of their images for this publication. Andrey Dolgor Dan Gotshall Polar Research Institute of Marine Sea Challengers, Inc. Fisheries And Oceanography [email protected] [email protected] Michael Lanboeuf Milton Love [email protected] Marine Science Institute [email protected] Stephen Metherell Jacques Moreau [email protected] [email protected] Bernd Ueberschaer Clinton Bauder [email protected] [email protected] Fish descriptions contained in this report are from: Froese, R. and Pauly, D. Editors. 2003 FishBase. Worldwide Web electronic publication. http://www.fishbase.org/ 13 August 2003 Photographer Fish Photographer Bauder, Clinton wolf-eel Gotshall, Daniel W scalyhead sculpin Bauder, Clinton blackeye goby Gotshall, Daniel W speckled sanddab Bauder, Clinton spotted cusk-eel Gotshall, Daniel W. bocaccio Bauder, Clinton tube-snout Gotshall, Daniel W. brown rockfish Gotshall, Daniel W. yellowtail rockfish Flescher, Don american shad Gotshall, Daniel W. dover sole Flescher, Don stripped bass Gotshall, Daniel W. pacific sanddab Gotshall, Daniel W. kelp greenling Garcia-Franco, Mauricio louvar -
Molecular Phylogeny and the Evolution of an Adaptive Visual System in Deep-Sea Dragonfishes (Stomiiformes: Stomiidae)
ORIGINAL ARTICLE doi:10.1111/evo.12322 THE COMPLEX EVOLUTIONARY HISTORY OF SEEING RED: MOLECULAR PHYLOGENY AND THE EVOLUTION OF AN ADAPTIVE VISUAL SYSTEM IN DEEP-SEA DRAGONFISHES (STOMIIFORMES: STOMIIDAE) Christopher P. Kenaley,1,2 Shannon C. DeVaney,3 and Taylor T. Fjeran4 1Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138 2E-mail: [email protected] 3Life Science Department, Los Angeles Pierce College, Woodland Hills, California 91371 4College of Forestry, Oregon State University, Corvallis, Oregon 97331 Received December 12, 2012 Accepted November 12, 2013 The vast majority of deep-sea fishes have retinas composed of only rod cells sensitive to only shortwave blue light, approximately 480–490 nm. A group of deep-sea dragonfishes, the loosejaws (family Stomiidae), possesses far-red emitting photophores and rhodopsins sensitive to long-wave emissions greater than 650 nm. In this study, the rhodopsin diversity within the Stomiidae is surveyed based on an analysis of rod opsin-coding sequences from representatives of 23 of the 28 genera. Using phylogenetic inference, fossil-calibrated estimates of divergence times, and a comparative approach scanning the stomiid phylogeny for shared genotypes and substitution histories, we explore the evolution and timing of spectral tuning in the family. Our results challenge both the monophyly of the family Stomiidae and the loosejaws. Despite paraphyly of the loosejaws, we infer for the first time that far-red visual systems have a single evolutionary origin within the family and that this shift in phenotype occurred at approximately 15.4 Ma. In addition, we found strong evidence that at approximately 11.2 Ma the most recent common ancestor of two dragonfish genera reverted to a primitive shortwave visual system during its evolution from a far-red sensitive dragonfish.