Anesthetic-Sensitive Ion Channel Modulation Is Associated with a Molar Water Solubility Cut-Off Robert J

Total Page:16

File Type:pdf, Size:1020Kb

Anesthetic-Sensitive Ion Channel Modulation Is Associated with a Molar Water Solubility Cut-Off Robert J Brosnan and Pham BMC Pharmacology and Toxicology (2018) 19:57 https://doi.org/10.1186/s40360-018-0244-z RESEARCH ARTICLE Open Access Anesthetic-sensitive ion channel modulation is associated with a molar water solubility cut-off Robert J. Brosnan* and Trung L. Pham Abstract Background: NMDA receptor modulation by hydrocarbons is associated with a molar water solubility cut-off. Low-affinity phenolic modulation of GABAA receptors is also associated with a cut-off, but at much lower molar solubility values. We hypothesized that other anesthetic-sensitive ion channels exhibit distinct cut-off effects associated with hydrocarbon molar water solubility, and that cut-off values are comparatively similar between related receptors than phylogenetically distant ones. Methods: Glycine or GABAA receptors or TREK-1, TRESK, Nav1.2, or Nav1.4 channels were expressed separately in frog oocytes. Two electrode voltage clamp techniques were used to study current responses in the presence and absence of hydrocarbon series from eight functional groups with progressively increasing size at saturated aqueous concentrations. Null response (cut-off) was defined by current measurements that were statistically indistinguishable between baseline and hydrocarbon exposure. Results: Ion channels exhibited cut-off effects associated with hydrocarbon molar water solubility in the following order of decreasing solubility: Nav1.2 ≈ Nav1.4 ≳ TRESK ≈ TREK-1 > GABAA >> glycine. Previously measured solubility cut-off values for NMDA receptors were intermediate between those for Nav1.4 and TRESK. Conclusions: Water solubility cut-off responses were present for all anesthetic-sensitive ion channels; distinct cut-off effects may exist for all cell surface receptors that are sensitive to volatile anesthetics. Suggested is the presence of amphipathic receptor sites normally occupied by water molecules that have dissociation constants inversely related to the cut-off solubility value. Poorly soluble hydrocarbons unable to reach concentrations sufficient to out-compete water for binding site access fail to modulate the receptor. Keywords: Anesthesia, Mechanism, Ion channel, Electrophysiology, Aliphatic Background ethers (with and without halogens), and various alkenes Protein-ligand interactions are commonly described using (with and without halogens); experimental inhaled anes- a “lock-and-key” model in which the protein and ligand thetics demonstrate even greater structural variety. Hence, have to fit together to have a chemical effect [1]. Although these drugs act as structurally diverse keys that each can inhaled anesthetics are presumed to exert their effects open the same lock. Moreover, a single inhaled anesthetic through ion channels and cell surface receptor proteins, can allosterically modulate function of a large number the diverse nature of both anesthetic ligands and the pro- of structurally diverse and phylogenetically unrelated teins they modulate challenge assumptions of a conserved ion channels—including many different ligand-gated ion complementary structure [2, 3]. Current and historical channels, voltage-gated ion channels, and leak channels— inhaled anesthetics include single atoms, triatomic mole- and cell surface receptors—including many different cules, various alkanes (with and without halogens), various channel-linked receptors, enzyme-linked receptors, and G protein-coupled receptors. Hence, these agents also * Correspondence: [email protected] act like a key that can open many different locks. Department of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California, One Shields Avenue, Davis, CA 95616, USA © The Author(s). 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. Brosnan and Pham BMC Pharmacology and Toxicology (2018) 19:57 Page 2 of 13 Inhaled anesthetics typically have high median effective and were either administered morphine analgesia and re- concentrations consistent with low-affinity target interac- covered from anesthesia (first ovariectomy) or euthanized tions [4], and these agents can bind multiple amphipathic (second ovariectomy) by decapitation and double pithing sites on a protein of which at least some may be associated while anesthetized. The theca externa and mesovarium of with water molecules [5]. Anesthetic modulation of protein the removed ovary were disrupted manually, and oocytes function firstly depends upon the presence of an agent were defolliculated enzymatically by use of 0.2% collage- in sufficient concentration to desolvate, displace weakly- nase. Oocytes were stored in a modified Barth’s electrolyte bound water molecules within an allosteric binding site, solution until ready for use. This protocol was approved and only then bind to the allosteric site. We postulate that by the Institutional Animal Care and Use Committee at drugs with insufficient water solubility to competitively the University of California, Davis. displace water from this amphipathic allosteric site would be unable to bind and modulate the protein—a cut-off Receptor expression effect—even at a saturated aqueous phase drug concentra- Each anesthetic-sensitive receptor type was separately tion. These low-affinity amphipathic drug-receptor inter- expressed in different oocytes by injecting plasmids actions could be associated with different hydrocarbon containing sequences for receptor subunits which were solubility cut-off values for different proteins since the provided as gifts from the laboratory of R. Adron Harris water dissociation constants within critical allosteric sites (University of Texas, Austin). All plasmids were sequenced could also be different for different proteins. In support, and their identity confirmed by comparison to National N-methyl-d-aspartate (NMDA) receptor whole-cell currents Center for Biotechnology Information databases. Human are unchanged by saturated concentrations of organic voltage-gated Type II sodium channels (Nav1.2) were compounds once the hydrocarbon ω-end or ring size is expressed by intracytoplasmic injection of 5 ng RNA per increased such that the predicted molar water solubility oocyte containing the SCN2A gene; human voltage gated is less than approximately 1.1 mM; yet these same hydrocar- Type IV sodium channels (Nav1.4) were similarly expressed bons still are able to allosterically modulate γ-aminobutyric using RNA encoding the SCN4A gene. The human TRESK acid receptor type A (GABAA)currents[6]. However, channel (K2P18.1) was expressed by intracytoplasmic GABAA receptors may have their own hydrocarbon cut-off, injection of 5 ng RNA per oocyte containing the KCNK18 as GABAA receptor whole-cell currents are unchanged by a gene; the human TREK-1 channel (K2P2.1), was similarly series of substituted phenol and benzene rings once the expressed using RNA encoding the KCNK2 gene. Hetero- predicted molar water solubility of these compounds is trimeric GABAA receptors were expressed by a 1 ng oocyte less than 0.1 mM [7]. intranuclear co-injection of three different plasmids We hypothesize that cut-off effects associated with molar containing cytomegalovirus promoters and coding DNA water solubility is a generalizable feature of inhaled for one of thee subunits—human α1 (GABRA1), rat β2 anesthetic-sensitive ion channels and receptors. As a (GABRB2), or rat γ2s (GABRG2 short)—in a 1:1:10 ratio test, we evaluated responses of anesthetic-sensitive to ensure incorporation of the γ-subunit; this was channels and receptors to eight different functional confirmed by demonstrating receptor potentiation to groups of organic compounds, differing only by carbon 10 μM chlordiazepoxide during co-application with GABA. additions to the ω-endofachainortoaring,sothat Glycine receptors were expressed by intracytoplasmic we could study compounds of different molecular volumes injection of 5 ng RNA per oocyte containing the gene and carbon atoms but similar molar water solubility values for the human glycine α1 subunit (GLRA1). Nuclease- (and vice versa) and therefore distinguish between effects free water-injected oocytes served as negative controls caused by drug size versus solubility. Although inhaled for all experiments. anesthetics bind many different proteins, we studied six channels and receptors reported to contribute to immobil- Electrophysiology studies izing effects in vivo: voltage-gated sodium channels type II Oocytes were incubated at 18 °C for 1–4 days in fresh and type IV (Nav1.2 and Nav1.4), [8] TWIK-related spinal and filtered modified Barth’ssolutioncomposedof88mM cord channel (TRESK) [9], TWIK-related potassium NaCl, 1 mM KCl, 2.4 mM NaHCO3, 20 mM HEPES, channel type I (TREK-1) [10], GABAA receptors [11], 0.82 mM MgSO4, 0.33 mM Ca(NO3)2, 0.41 mM CaCl2, and glycine receptors [12]. 5 mM sodium pyruvate, gentamycin, penicillin, strepto- mycin, and corrected to pH = 7.4. All salts and antibiotics Methods were A.C.S. grade (Fisher Scientific, Pittsburgh, PA). Oocyte collection Oocytes were studied in a 250 μL linear-flow chamber
Recommended publications
  • Potassium Channels in Epilepsy
    Downloaded from http://perspectivesinmedicine.cshlp.org/ on September 28, 2021 - Published by Cold Spring Harbor Laboratory Press Potassium Channels in Epilepsy Ru¨diger Ko¨hling and Jakob Wolfart Oscar Langendorff Institute of Physiology, University of Rostock, Rostock 18057, Germany Correspondence: [email protected] This review attempts to give a concise and up-to-date overview on the role of potassium channels in epilepsies. Their role can be defined from a genetic perspective, focusing on variants and de novo mutations identified in genetic studies or animal models with targeted, specific mutations in genes coding for a member of the large potassium channel family. In these genetic studies, a demonstrated functional link to hyperexcitability often remains elusive. However, their role can also be defined from a functional perspective, based on dy- namic, aggravating, or adaptive transcriptional and posttranslational alterations. In these cases, it often remains elusive whether the alteration is causal or merely incidental. With 80 potassium channel types, of which 10% are known to be associated with epilepsies (in humans) or a seizure phenotype (in animals), if genetically mutated, a comprehensive review is a challenging endeavor. This goal may seem all the more ambitious once the data on posttranslational alterations, found both in human tissue from epilepsy patients and in chronic or acute animal models, are included. We therefore summarize the literature, and expand only on key findings, particularly regarding functional alterations found in patient brain tissue and chronic animal models. INTRODUCTION TO POTASSIUM evolutionary appearance of voltage-gated so- CHANNELS dium (Nav)andcalcium (Cav)channels, Kchan- nels are further diversified in relation to their otassium (K) channels are related to epilepsy newer function, namely, keeping neuronal exci- Psyndromes on many different levels, ranging tation within limits (Anderson and Greenberg from direct control of neuronal excitability and 2001; Hille 2001).
    [Show full text]
  • A Dominant-Negative Mutation in the TRESK Potassium Channel Is Linked to Familial Migraine with Aura
    LETTERS A dominant-negative mutation in the TRESK potassium channel is linked to familial migraine with aura Ronald G Lafrenière1,2,13, M Zameel Cader3,4,13, Jean-François Poulin2, Isabelle Andres-Enguix5, Maryse Simoneau2, Namrata Gupta2, Karine Boisvert2, François Lafrenière2, Shannon McLaughlan2, Marie-Pierre Dubé6, Martin M Marcinkiewicz7, Sreeram Ramagopalan8, Olaf Ansorge9, Bernard Brais1, Jorge Sequeiros10, Jose Maria Pereira-Monteiro11, Lyn R Griffiths12, Stephen J Tucker5, George Ebers8 & Guy A Rouleau1,2 Migraine with aura is a common, debilitating, recurrent of the trigeminal ganglion afferents5 and may lead to central sensiti- headache disorder associated with transient and reversible focal zation. Considerable insights into the pathogenesis of migraine have neurological symptoms1. A role has been suggested for the come from the investigation of the rare autosomal dominant subtype two-pore domain (K2P) potassium channel, TWIK-related spinal of migraine with aura, familial hemiplegic migraine. Three suscepti- cord potassium channel (TRESK, encoded by KCNK18), in pain bility genes (CACNA1A, ATP1A2 and SCNA1), which encode either pathways and general anaesthesia2. We therefore examined ion channels or ion transport proteins, have so far been identified6–8, whether TRESK is involved in migraine by screening the and it is likely that mutations in these genes reduce the threshold for KCNK18 gene in subjects diagnosed with migraine. Here we CSD9,10. However, such mutations are not found in typical migraine report a frameshift mutation, F139WfsX24, which segregates with aura, suggesting that other ion channels may be involved. perfectly with typical migraine with aura in a large pedigree. K2P channels are expressed throughout the central nervous system We also identified prominent TRESK expression in migraine- and have a key role in controlling neuronal resting membrane potential salient areas such as the trigeminal ganglion.
    [Show full text]
  • Distinguishing Pleiotropy from Linked QTL Between Milk Production Traits
    Cai et al. Genet Sel Evol (2020) 52:19 https://doi.org/10.1186/s12711-020-00538-6 Genetics Selection Evolution RESEARCH ARTICLE Open Access Distinguishing pleiotropy from linked QTL between milk production traits and mastitis resistance in Nordic Holstein cattle Zexi Cai1*†, Magdalena Dusza2†, Bernt Guldbrandtsen1, Mogens Sandø Lund1 and Goutam Sahana1 Abstract Background: Production and health traits are central in cattle breeding. Advances in next-generation sequencing technologies and genotype imputation have increased the resolution of gene mapping based on genome-wide association studies (GWAS). Thus, numerous candidate genes that afect milk yield, milk composition, and mastitis resistance in dairy cattle are reported in the literature. Efect-bearing variants often afect multiple traits. Because the detection of overlapping quantitative trait loci (QTL) regions from single-trait GWAS is too inaccurate and subjective, multi-trait analysis is a better approach to detect pleiotropic efects of variants in candidate genes. However, large sample sizes are required to achieve sufcient power. Multi-trait meta-analysis is one approach to deal with this prob- lem. Thus, we performed two multi-trait meta-analyses, one for three milk production traits (milk yield, protein yield and fat yield), and one for milk yield and mastitis resistance. Results: For highly correlated traits, the power to detect pleiotropy was increased by multi-trait meta-analysis com- pared with the subjective assessment of overlapping of single-trait QTL confdence intervals. Pleiotropic efects of lead single nucleotide polymorphisms (SNPs) that were detected from the multi-trait meta-analysis were confrmed by bivariate association analysis. The previously reported pleiotropic efects of variants within the DGAT1 and MGST1 genes on three milk production traits, and pleiotropic efects of variants in GHR on milk yield and fat yield were con- frmed.
    [Show full text]
  • First Principles Prediction of Thermodynamic Properties
    2 First Principles Prediction of Thermodynamic Properties Hélio F. Dos Santos and Wagner B. De Almeida NEQC: Núcleo de Estudos em Química Computacional, Departamento de Química, ICE Universidade Federal de Juiz de Fora (UFJF), Campus Universitário Martelos, Juiz de Fora LQC-MM: Laboratório de Química Computacional e Modelagem Molecular Departamento de Química, ICEx, Universidade Federal de Minas Gerais (UFMG) Campus Universitário, Pampulha, Belo Horizonte Brazil 1. Introduction The determination of the molecular structure is undoubtedly an important issue in chemistry. The knowledge of the tridimensional structure allows the understanding and prediction of the chemical-physics properties and the potential applications of the resulting material. Nevertheless, even for a pure substance, the structure and measured properties reflect the behavior of many distinct geometries (conformers) averaged by the Boltzmann distribution. In general, for flexible molecules, several conformers can be found and the analysis of the physical and chemical properties of these isomers is known as conformational analysis (Eliel, 1965). In most of the cases, the conformational processes are associated with small rotational barriers around single bonds, and this fact often leads to mixtures, in which many conformations may exist in equilibrium (Franklin & Feltkamp, 1965). Therefore, the determination of temperature-dependent conformational population is very much welcomed in conformational analysis studies carried out by both experimentalists and theoreticians.
    [Show full text]
  • Transcriptomic Analysis of Native Versus Cultured Human and Mouse Dorsal Root Ganglia Focused on Pharmacological Targets Short
    bioRxiv preprint doi: https://doi.org/10.1101/766865; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Transcriptomic analysis of native versus cultured human and mouse dorsal root ganglia focused on pharmacological targets Short title: Comparative transcriptomics of acutely dissected versus cultured DRGs Andi Wangzhou1, Lisa A. McIlvried2, Candler Paige1, Paulino Barragan-Iglesias1, Carolyn A. Guzman1, Gregory Dussor1, Pradipta R. Ray1,#, Robert W. Gereau IV2, # and Theodore J. Price1, # 1The University of Texas at Dallas, School of Behavioral and Brain Sciences and Center for Advanced Pain Studies, 800 W Campbell Rd. Richardson, TX, 75080, USA 2Washington University Pain Center and Department of Anesthesiology, Washington University School of Medicine # corresponding authors [email protected], [email protected] and [email protected] Funding: NIH grants T32DA007261 (LM); NS065926 and NS102161 (TJP); NS106953 and NS042595 (RWG). The authors declare no conflicts of interest Author Contributions Conceived of the Project: PRR, RWG IV and TJP Performed Experiments: AW, LAM, CP, PB-I Supervised Experiments: GD, RWG IV, TJP Analyzed Data: AW, LAM, CP, CAG, PRR Supervised Bioinformatics Analysis: PRR Drew Figures: AW, PRR Wrote and Edited Manuscript: AW, LAM, CP, GD, PRR, RWG IV, TJP All authors approved the final version of the manuscript. 1 bioRxiv preprint doi: https://doi.org/10.1101/766865; this version posted September 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.
    [Show full text]
  • Toxicological Assessment of Hanford Tank Headspace Chemicals - Determination of Chemicals of Potential Concern
    PNNL-14949 Rev. 0 Pacific Northwest National Laboratory Operated by Battelle for the U.S. Department of Energy Toxicological Assessment of Hanford Tank Headspace Chemicals - Determination of Chemicals of Potential Concern I. E. Burgeson N. A. Moore A. L. Bunn J. L. Huckaby December 2004 • Prepared for CH2M HILL Hanford Group, Inc. LEGAL NOTICE This report was prepared by Battelle Memorial Institute (Battelle) as an account of sponsored research activities. Neither Client nor Battelle nor any person acting on behalf of either: MAKES ANY WARRANTY OR REPRESENTATION, EXPRESS OR IMPLIED, with respect to the accuracy, completeness, or usefulness of the information contained in this report, or that the use of any information, apparatus, process, or composition disclosed in this report may not infringe privately owned rights; or Assumes any liabilities with respect to the use of, or for damages resulting from the use of, any information, apparatus, process, or composition disclosed in this report. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise, does not necessarily constitute or imply its endorsement, recommendation, or favoring by Battelle. The views and opinions of authors expressed herein do not necessarily state or reflect those of Battelle. @ This document was printed on recycled paper. (9/97) PNNL-14949 Rev. 0 Toxicological Assessment of Hanford Tank Headspace Chemicals - Determination of Chemicals of Potential Concern I. E. Burgeson N. A. Moore A. L. Bunn J. L. Huckaby December 2004 Prepared for CH2M HILL Hanford Group, Inc. Pacific Northwest Nationa] Laboratory Richland, Washington 99352 Summary A toxicological assessment of chemicals found, or predicted to be present, in Hanford tank headspaces was performed by Pacific Northwest National Laboratory in support of the Industrial Hygiene Chemical Vapor Technical Basis produced by CH2M HILL Hanford Group, Inc.
    [Show full text]
  • Revised Group Additivity Values for Enthalpies of Formation (At 298 K) of Carbon– Hydrogen and Carbon–Hydrogen–Oxygen Compounds
    Revised Group Additivity Values for Enthalpies of Formation (at 298 K) of Carbon– Hydrogen and Carbon–Hydrogen–Oxygen Compounds Cite as: Journal of Physical and Chemical Reference Data 25, 1411 (1996); https://doi.org/10.1063/1.555988 Submitted: 17 January 1996 . Published Online: 15 October 2009 N. Cohen ARTICLES YOU MAY BE INTERESTED IN Additivity Rules for the Estimation of Molecular Properties. Thermodynamic Properties The Journal of Chemical Physics 29, 546 (1958); https://doi.org/10.1063/1.1744539 Critical Evaluation of Thermochemical Properties of C1–C4 Species: Updated Group- Contributions to Estimate Thermochemical Properties Journal of Physical and Chemical Reference Data 44, 013101 (2015); https:// doi.org/10.1063/1.4902535 Estimation of the Thermodynamic Properties of Hydrocarbons at 298.15 K Journal of Physical and Chemical Reference Data 17, 1637 (1988); https:// doi.org/10.1063/1.555814 Journal of Physical and Chemical Reference Data 25, 1411 (1996); https://doi.org/10.1063/1.555988 25, 1411 © 1996 American Institute of Physics for the National Institute of Standards and Technology. Revised Group Additivity Values for Enthalpies of Formation (at 298 K) of Carbon-Hydrogen and Carbon-Hydrogen-Oxygen Compounds N. Cohen Thermochemical Kinetics Research, 6507 SE 31st Avenue, Portland, Oregon 97202-8627 Received January 17, 1996; revised manuscript received September 4, 1996 A program has been undertaken for the evaluation and revision of group additivity values (GAVs) necessary for predicting, by means of Benson's group additivity method, thermochemical properties of organic molecules. This review reports on the portion of that program dealing with GAVs for enthalpies of formation at 298.15 K (hereinafter abbreviated as 298 K) for carbon-hydrogen and carbon-hydrogen-oxygen compounds.
    [Show full text]
  • Ion Channels
    UC Davis UC Davis Previously Published Works Title THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels. Permalink https://escholarship.org/uc/item/1442g5hg Journal British journal of pharmacology, 176 Suppl 1(S1) ISSN 0007-1188 Authors Alexander, Stephen PH Mathie, Alistair Peters, John A et al. Publication Date 2019-12-01 DOI 10.1111/bph.14749 License https://creativecommons.org/licenses/by/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2019/20: Ion channels. British Journal of Pharmacology (2019) 176, S142–S228 THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels Stephen PH Alexander1 , Alistair Mathie2 ,JohnAPeters3 , Emma L Veale2 , Jörg Striessnig4 , Eamonn Kelly5, Jane F Armstrong6 , Elena Faccenda6 ,SimonDHarding6 ,AdamJPawson6 , Joanna L Sharman6 , Christopher Southan6 , Jamie A Davies6 and CGTP Collaborators 1School of Life Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK 2Medway School of Pharmacy, The Universities of Greenwich and Kent at Medway, Anson Building, Central Avenue, Chatham Maritime, Chatham, Kent, ME4 4TB, UK 3Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK 4Pharmacology and Toxicology, Institute of Pharmacy, University of Innsbruck, A-6020 Innsbruck, Austria 5School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, BS8 1TD, UK 6Centre for Discovery Brain Science, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2019/20 is the fourth in this series of biennial publications. The Concise Guide provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to the open access knowledgebase source of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties.
    [Show full text]
  • Genomics Analysis of Potassium Channel Genes in Songbirds Reveals
    Lovell et al. BMC Genomics 2013, 14:470 http://www.biomedcentral.com/1471-2164/14/470 RESEARCH ARTICLE Open Access Genomics analysis of potassium channel genes in songbirds reveals molecular specializations of brain circuits for the maintenance and production of learned vocalizations Peter V Lovell, Julia B Carleton and Claudio V Mello* Abstract Background: A fundamental question in molecular neurobiology is how genes that determine basic neuronal properties shape the functional organization of brain circuits underlying complex learned behaviors. Given the growing availability of complete vertebrate genomes, comparative genomics represents a promising approach to address this question. Here we used genomics and molecular approaches to study how ion channel genes influence the properties of the brain circuitry that regulates birdsong, a learned vocal behavior with important similarities to human speech acquisition. We focused on potassium (K-)Channels, which are major determinants of neuronal cell excitability. Starting with the human gene set of K-Channels, we used cross-species mRNA/protein alignments, and syntenic analysis to define the full complement of orthologs, paralogs, allelic variants, as well as novel loci not previously predicted in the genome of zebra finch (Taeniopygia guttata). We also compared protein coding domains in chicken and zebra finch orthologs to identify genes under positive selective pressure, and those that contained lineage-specific insertions/deletions in functional domains. Finally, we conducted comprehensive in situ hybridizations to determine the extent of brain expression, and identify K-Channel gene enrichments in nuclei of the avian song system. Results: We identified 107 K-Channel finch genes, including 6 novel genes common to non-mammalian vertebrate lineages.
    [Show full text]
  • In This Handout, All of Our Functional Groups Are Presented As Condensed Line Formulas, 2D and 3D Formulas and with Nomenclature Prefixes and Suffixes (If Present)
    In this handout, all of our functional groups are presented as condensed line formulas, 2D and 3D formulas and with nomenclature prefixes and suffixes (if present). Organic names are built on a foundation of alkanes, alkenes and alkynes. Those examples are presented first and you need to know those rules. The strategies can be found in Chapter 4 of our textbook (alkanes: pages 93-98, cycloalkanes 102-104, alkenes: pages 104-110, alkynes: pages 112-113 and combinations of all of them 113-115). After introducing examples of alkanes, alkenes, alkynes and combinations of them, the functional groups are presented in order of priority. A few nomenclature examples are provided for each of the functional groups. Examples of the various functional groups are presented on pages 115-135 in the textbook. Two overview pages are on pages 136-137. Some functional groups have a suffix name when they are the highest priority functional group and a prefix name when they are not the highest priority group, and these are added to the skeletal names with identifying numbers and stereochemistry terms (E and Z for alkenes, R and S for chiral centers and cis and trans for rings). Several low priority functional groups only have a prefix name. A few additional special patterns are shown on pages 98-102. The only way to learn this topic is practice (over and over). The best practice approach is to actually write out the names (on an extra piece of paper or on a white board, and then do it again). The same functional groups are used throughout the entire course.
    [Show full text]
  • Bioelectric-Calcineurin Signaling Module Regulates Allometric Growth and Size of the Zebrafsh Fn Received: 8 March 2018 Jacob M
    www.nature.com/scientificreports OPEN Bioelectric-calcineurin signaling module regulates allometric growth and size of the zebrafsh fn Received: 8 March 2018 Jacob M. Daane1, Jennifer Lanni1,2, Ina Rothenberg3, Guiscard Seebohm3, Charles W. Higdon4, Accepted: 18 June 2018 Stephen L. Johnson4 & Matthew P. Harris1 Published: xx xx xxxx The establishment of relative size of organs and structures is paramount for attaining fnal form and function of an organism. Importantly, variation in the proportions of structures frequently underlies adaptive change in morphology in evolution and maybe a common mechanism underlying selection. However, the mechanism by which growth is integrated within tissues during development to achieve proper proportionality is poorly understood. We have shown that signaling by potassium channels mediates coordinated size regulation in zebrafsh fns. Recently, calcineurin inhibitors were shown to elicit changes in zebrafsh fn allometry as well. Here, we identify the potassium channel kcnk5b as a key player in integrating calcineurin’s growth efects, in part through regulation of the cytoplasmic C-terminus of the channel. We propose that the interaction between Kcnk5b and calcineurin acts as a signaling node to regulate allometric growth. Importantly, we fnd that this regulation is epistatic to inherent mechanisms instructing overall size as inhibition of calcineurin is able to bypass genetic instruction of size as seen in sof and wild-type fns, however, it is not sufcient to re-specify positional memory of size of the fn. These fndings integrate classic signaling mediators such as calcineurin with ion channel function in the regulation of size and proportion during growth. Te establishment of relative proportion of structures and organs is essential for the normal physiology and function of an organism.
    [Show full text]
  • KCNK18 Biallelic Variants Associated with Intellectual Disability and Neurodevelopmental Disorders Alter TRESK Channel Activity
    International Journal of Molecular Sciences Article KCNK18 Biallelic Variants Associated with Intellectual Disability and Neurodevelopmental Disorders Alter TRESK Channel Activity Lisa Pavinato 1,2 , Ehsan Nematian-Ardestani 3, Andrea Zonta 4, Silvia De Rubeis 5,6,7,8 , Joseph Buxbaum 5,6,7,8,9,10, Cecilia Mancini 11 , Alessandro Bruselles 12, Marco Tartaglia 11, Mauro Pessia 3,13 , Stephen J. Tucker 14, Maria Cristina D’Adamo 3,*,† and Alfredo Brusco 1,4,*,† 1 Department of Medical Sciences, University of Turin, 10126 Turin, Italy; [email protected] 2 Center for Molecular Medicine Cologne, Institute of Human Genetics, University of Cologne, 50931 Cologne, Germany 3 Department of Physiology and Biochemistry, Faculty of Medicine and Surgery, University of Malta, MSD-2080 Msida, Malta; [email protected] (E.N.-A.); [email protected] (M.P.) 4 Unit of Medical Genetics, “Città della Salute e della Scienza” University Hospital, 10126 Turin, Italy; [email protected] 5 Seaver Autism Center for Research and Treatment, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; [email protected] (S.D.R.); [email protected] (J.B.) 6 Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA 7 The Mindich Child Health and Development Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA 8 Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA Citation: Pavinato, L.; 9 Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, Nematian-Ardestani, E.; Zonta, A.; New York, NY 10029, USA De Rubeis, S.; Buxbaum, J.; Mancini, 10 Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA C.; Bruselles, A.; Tartaglia, M.; Pessia, 11 Genetics and Rare Diseases Research Division, Ospedale Pediatrico Bambino Gesù, IRCCS, 00165 Rome, Italy; M.; Tucker, S.J.; et al.
    [Show full text]