A Case with Neurological Abnormalities Caused by Rickettsia
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Community Analysis of Microbial Sharing and Specialization in A
Downloaded from http://rspb.royalsocietypublishing.org/ on March 15, 2017 Community analysis of microbial sharing rspb.royalsocietypublishing.org and specialization in a Costa Rican ant–plant–hemipteran symbiosis Elizabeth G. Pringle1,2 and Corrie S. Moreau3 Research 1Department of Biology, Program in Ecology, Evolution, and Conservation Biology, University of Nevada, Cite this article: Pringle EG, Moreau CS. 2017 Reno, NV 89557, USA 2Michigan Society of Fellows, University of Michigan, Ann Arbor, MI 48109, USA Community analysis of microbial sharing and 3Department of Science and Education, Field Museum of Natural History, 1400 South Lake Shore Drive, specialization in a Costa Rican ant–plant– Chicago, IL 60605, USA hemipteran symbiosis. Proc. R. Soc. B 284: EGP, 0000-0002-4398-9272 20162770. http://dx.doi.org/10.1098/rspb.2016.2770 Ants have long been renowned for their intimate mutualisms with tropho- bionts and plants and more recently appreciated for their widespread and diverse interactions with microbes. An open question in symbiosis research is the extent to which environmental influence, including the exchange of Received: 14 December 2016 microbes between interacting macroorganisms, affects the composition and Accepted: 17 January 2017 function of symbiotic microbial communities. Here we approached this ques- tion by investigating symbiosis within symbiosis. Ant–plant–hemipteran symbioses are hallmarks of tropical ecosystems that produce persistent close contact among the macroorganism partners, which then have substantial opportunity to exchange symbiotic microbes. We used metabarcoding and Subject Category: quantitative PCR to examine community structure of both bacteria and Ecology fungi in a Neotropical ant–plant–scale-insect symbiosis. Both phloem-feed- ing scale insects and honeydew-feeding ants make use of microbial Subject Areas: symbionts to subsist on phloem-derived diets of suboptimal nutritional qual- ecology, evolution, microbiology ity. -
(Chiroptera: Vespertilionidae) and the Bat Soft Tick Argas Vespe
Zhao et al. Parasites Vectors (2020) 13:10 https://doi.org/10.1186/s13071-020-3885-x Parasites & Vectors SHORT REPORT Open Access Rickettsiae in the common pipistrelle Pipistrellus pipistrellus (Chiroptera: Vespertilionidae) and the bat soft tick Argas vespertilionis (Ixodida: Argasidae) Shuo Zhao1†, Meihua Yang2†, Gang Liu1†, Sándor Hornok3, Shanshan Zhao1, Chunli Sang1, Wenbo Tan1 and Yuanzhi Wang1* Abstract Background: Increasing molecular evidence supports that bats and/or their ectoparasites may harbor vector-borne bacteria, such as bartonellae and borreliae. However, the simultaneous occurrence of rickettsiae in bats and bat ticks has been poorly studied. Methods: In this study, 54 bat carcasses and their infesting soft ticks (n 67) were collected in Shihezi City, north- western China. The heart, liver, spleen, lung, kidney, small intestine and large= intestine of bats were dissected, followed by DNA extraction. Soft ticks were identifed both morphologically and molecularly. All samples were examined for the presence of rickettsiae by amplifying four genetic markers (17-kDa, gltA, ompA and ompB). Results: All bats were identifed as Pipistrellus pipistrellus, and their ticks as Argas vespertilionis. Molecular analyses showed that DNA of Rickettsia parkeri, R. lusitaniae, R. slovaca and R. raoultii was present in bat organs/tissues. In addition, nine of the 67 bat soft ticks (13.43%) were positive for R. raoultii (n 5) and R. rickettsii (n 4). In the phylo- genetic analysis, these bat-associated rickettsiae clustered together with conspecifc= sequences reported= from other host and tick species, confrming the above results. Conclusions: To the best of our knowledge, DNA of R. parkeri, R. slovaca and R. -
Intraspecies Comparative Genomics of Rickettsia
AIX ͲMARSEILLE UNIVERSITÉ FACULTÉ DE MÉDECINE DE MARSEILLE ÉCOLE DOCTORALE DES SCIENCES DE LA VIE ET DE LA SANTÉ T H È S E Présentée et publiquement soutenue devant LA FACULTÉ DE MÉDECINE DE MARSEILLE Le 13 décembre 2013 Par M. Erwin SENTAUSA Né le 16 décembre 1979 àMalang, Indonésie INTRASPECIES COMPARATIVE GENOMICS OF RICKETTSIA Pour obtenir le grade de DOCTORAT d’AIX ͲMARSEILLE UNIVERSITÉ SPÉCIALITÉ :PATHOLOGIE HUMAINE Ͳ MALADIES INFECTIEUSES Membres du Jury de la Thèse : Dr. Patricia RENESTO Rapporteur Pr. Max MAURIN Rapporteur Dr. Florence FENOLLAR Membre du Jury Pr. Pierre ͲEdouard FOURNIER Directeur de thèse Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes UM63, CNRS 7278, IRD 198, Inserm 1095 Avant Propos Le format de présentation de cette thèse correspond à une recommandation de la spécialité Maladies Infectieuses et Microbiologie, à l’intérieur du Master de Sciences de la Vie et de la Santé qui dépend de l’Ecole Doctorale des Sciences de la Vie de Marseille. Le candidat est amené àrespecter des règles qui lui sont imposées et qui comportent un format de thèse utilisé dans le Nord de l’Europe permettant un meilleur rangement que les thèses traditionnelles. Par ailleurs, la partie introduction et bibliographie est remplacée par une revue envoyée dans un journal afin de permettre une évaluation extérieure de la qualité de la revue et de permettre àl’étudiant de le commencer le plus tôt possible une bibliographie exhaustive sur le domaine de cette thèse. Par ailleurs, la thèse est présentée sur article publié, accepté ou soumis associé d’un bref commentaire donnant le sens général du travail. -
“Epidemiology of Rickettsial Infections”
6/19/2019 I have got 45 min…… First 15 min… •A travel medicine physician… •Evolution of epidemiology of rickettsial diseases in brief “Epidemiology of rickettsial •Expanded knowledge of rickettsioses vs travel medicine infections” •Determinants of Current epidemiology of Rickettsialinfections •Role of returning traveller in rickettsial diseaseepidemiology Ranjan Premaratna •Current epidemiology vs travel health physician Faculty of Medicine, University of Kelaniya Next 30 min… SRI LANKA •Clinical cases 12 Human Travel & People travel… Human activity Regionally and internationally Increased risk of contact between Bugs travel humans and bugs Deforestation Regionally and internationally Habitat fragmentation Echo tourism 34 This man.. a returning traveler.. down Change in global epidemiology with fever.. What can this be??? • This is the greatest challenge faced by an infectious disease / travel medicine physician • compared to a physician attending to a well streamlined management plan of a non-communicable disease……... 56 1 6/19/2019 Rickettsial diseases • A travel medicine physician… • Represent some of the oldest and most recently recognizedinfectious • Evolution of epidemiology of rickettsial diseases in brief diseases • Expanded knowledge of rickettsioses vs travel medicine • Determinants of Current epidemiology of Rickettsialinfections • Athens plague described during 5th century BC……? Epidemic typhus • Role of returning traveller in rickettsial diseaseepidemiology • Current epidemiology vs travel health physician • Clinical cases 78 In 1916.......... By 1970s-1980s four endemic rickettsioses; a single agent unique to a given geography !!! • R. prowazekii was identified as the etiological agent of epidemic typhus • Rocky Mountain spotted fever • Mediterranean spotted fever • North Asian tick typhus • Queensland tick typhus Walker DH, Fishbein DB. Epidemiology of rickettsial diseases. Eur J Epidemiol 1991 910 Family Rickettsiaceae Transitional group between SFG and TG Genera Rickettsia • R. -
Rickettsia Slovaca Ples (Serum, Skin Biopsy, Or Ticks Harvested from the Scalp) Were Received at Our Laboratory from January 2002 Through and R
bite on the scalp without any symptoms from whom sam- Rickettsia slovaca ples (serum, skin biopsy, or ticks harvested from the scalp) were received at our laboratory from January 2002 through and R. raoultii December 2007. Epidemiologic and clinical data were col- lected retrospectively. The study was approved by the eth- in Tick-borne ics committee of the Medicine School of Marseille under Rickettsioses reference 08-008. Immunoglobulin (Ig) G and IgM titers against rickett- Philippe Parola, Clarisse Rovery, sial antigens were estimated by microimmunofluorescent Jean Marc Rolain, Philippe Brouqui, assay; results were verified by Western blot and cross- Bernard Davoust, and Didier Raoult absorption studies (3). Ticks found on persons and skin biopsy specimens were cultured on human embryonic Tick-borne lymphadenopathy (TIBOLA), also called Dermacentor-borne necrosis erythema and lymphadenopa- thy (DEBONEL), is defined as the association of a tick bite, an inoculation eschar on the scalp, and cervical adenopa- thies. We identified the etiologic agent for 65% of 86 patients with TIBOLA/DEBONEL as either Rickettsia slovaca (49/86, 57%) or R. raoultii (7/86, 8%). n 1968, Rickettsia slovaca, a spotted fever group (SFG) Irickettsia, was isolated from Dermacentor marginatus ticks in the former Czechoslovakia before being detected in D. marginatus or D. reticulatus ticks throughout Europe (Figure 1) (1). In 1997, R. slovaca was described as a human pathogen and an agent of tick-borne lymphadenopathy (TI- BOLA) (2). This syndrome, also called Dermacentor-borne necrosis erythema and lymphadenopathy (DEBONEL), is defined as the association of a tick bite, an inoculation eschar on the scalp, and cervical lymphadenopathies (3). -
Exploration of Tick-Borne Pathogens and Microbiota of Dog Ticks Collected at Potchefstroom Animal Welfare Society
Exploration of tick-borne pathogens and microbiota of dog ticks collected at Potchefstroom Animal Welfare Society C Van Wyk orcid.org 0000-0002-5971-4396 Dissertation submitted in fulfilment of the requirements for the degree Master of Science in Environmental Sciences at the North-West University Supervisor: Prof MMO Thekisoe Co-supervisor: Ms K Mtshali Graduation May 2019 24263524 DEDICATION This thesis is dedicated to the late Nettie Coetzee. For her inspiration and lessons to overcome any obstacle that life may present. God called home another angel we all love and miss you. “We are the scientists, trying to make sense of the stars inside us.” -Christopher Poindexter i ACKNOWLEDGEMENTS My sincerest appreciation goes out to my supervisor, Prof. Oriel M.M. Thekisoe, for his support, motivation, guidance, and insightfulness during the duration of this project and been there every step of the way. I would also like to thank my co-supervisor, Ms. Khethiwe Mtshali, for her patience and insightfulness towards the corrections of this thesis. I would like to thank Dr. Stalone Terera and the staff members at PAWS for their aid towards the collection of tick specimens. For the sequencing on the Illumina MiSeq platform and metagenomic data analysis I would like to thank Dr. Moeti O. Taioe, Dr. Charlotte M.S. Mienie, Dr. Danie C. La Grange, and Dr. Marlin J. Mert. I would like to thank the National Research Foundation (NRF) for their financial support by awarding me the S&F- Innovation Masters Scholarship and the North-West University (NWU) for the use of their laboratories. -
Paradoxical Evolution of Rickettsial Genomes
Ticks and Tick-borne Diseases 10 (2019) 462–469 Contents lists available at ScienceDirect Ticks and Tick-borne Diseases journal homepage: www.elsevier.com/locate/ttbdis Paradoxical evolution of rickettsial genomes T ⁎ Awa Diopa, Didier Raoultb, Pierre-Edouard Fourniera, a UMR VITROME, Aix-Marseille University, IRD, Service de Santé des Armées, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Uuniversitaire Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005, Marseille, France b UMR MEPHI, Aix-Marseille University, IRD, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Uuniversitaire Méditerranée Infection, Marseille, France ARTICLE INFO ABSTRACT Keywords: Rickettsia species are strictly intracellular bacteria that evolved approximately 150 million years ago from a Rickettsia presumably free-living common ancestor from the order Rickettsiales that followed a transition to an obligate Genomics intracellular lifestyle. Rickettsiae are best known as human pathogens vectored by various arthropods causing a Evolution range of mild to severe human diseases. As part of their obligate intracellular lifestyle, rickettsial genomes have Virulence undergone a convergent evolution that includes a strong genomic reduction resulting from progressive gene Genome rearrangement degradation, genomic rearrangements as well as a paradoxical expansion of various genetic elements, notably Non-coding DNA Gene loss small RNAs and short palindromic elements whose role remains unknown. This reductive evolutionary process is DNA repeats not unique to members of the Rickettsia genus but is common to several human pathogenic bacteria. Gene loss, gene duplication, DNA repeat duplication and horizontal gene transfer all have shaped rickettsial genome evolution. Gene loss mostly involved amino-acid, ATP, LPS and cell wall component biosynthesis and tran- scriptional regulators, but with a high preservation of toxin-antitoxin (TA) modules, recombination and DNA repair proteins. -
Estimated Seroprevalence of Anaplasma Spp. and Spotted Fever Group MARK Rickettsia Exposure Among Herders and Livestock in Mongolia ⁎ Michael E
Acta Tropica 177 (2018) 179–185 Contents lists available at ScienceDirect Acta Tropica journal homepage: www.elsevier.com/locate/actatropica Estimated seroprevalence of Anaplasma spp. and spotted fever group MARK Rickettsia exposure among herders and livestock in Mongolia ⁎ Michael E. von Frickena,b, , Sukhbaatar Lkhagvatserenc, Bazartseren Boldbaatarc, Pagbajab Nymadawad, Thomas A. Weppelmanne, Bekh-Ochir Baigalmaaf, Benjamin D. Andersonb,g, Megan E. Rellerb,g, Paul M. Lantosh, Gregory C. Grayb,g a Department of Global and Community Health, George Mason University, Fairfax, VA, USA b Division of Infectious Diseases, Duke Global Health Institute, Duke University, Durham, NC, USA c Institute of Veterinary Medicine, Ulaanbaatar, Mongolia d Mongolian Academy of Medical Sciences, Ulaanbaatar, Mongolia e Herbert Wertheim College of Medicine, Florida International University, Miami, FL, USA f National Center for Zoonotic Diseases, Ulaanbaatar, Mongolia g Division of Infectious Diseases, School of Medicine, Duke University, Durham, NC, USA h Divisions of Pediatric Infectious Diseases and General Internal Medicine, and Duke Global Health Institute, Duke University, Durham, NC, USA ARTICLE INFO ABSTRACT Keywords: Background: To better understand the epidemiology of tick-borne disease in Mongolia, a comprehensive ser- Rickettsia oprevalence study was conducted investigating exposure to Anaplasma spp. and spotted fever group (SFG) Anaplasma Rickettsia spp. in nomadic herders and their livestock across three provinces from 2014 to 2015. Mongolia Methods: Blood was collected from 397 herders and 2370 livestock, including sheep, goats, cattle, horses and Seroprevalence camels. Antibodies against Anaplasma spp. and SFG Rickettsia were determined by indirect immunofluorescence Tick-borne disease using commercially available slides coated with Anaplasma phagocytophilum and Rickettsia rickettsii antigens. -
Lists of Names of Prokaryotic Candidatus Taxa
NOTIFICATION LIST: CANDIDATUS LIST NO. 1 Oren et al., Int. J. Syst. Evol. Microbiol. DOI 10.1099/ijsem.0.003789 Lists of names of prokaryotic Candidatus taxa Aharon Oren1,*, George M. Garrity2,3, Charles T. Parker3, Maria Chuvochina4 and Martha E. Trujillo5 Abstract We here present annotated lists of names of Candidatus taxa of prokaryotes with ranks between subspecies and class, pro- posed between the mid- 1990s, when the provisional status of Candidatus taxa was first established, and the end of 2018. Where necessary, corrected names are proposed that comply with the current provisions of the International Code of Nomenclature of Prokaryotes and its Orthography appendix. These lists, as well as updated lists of newly published names of Candidatus taxa with additions and corrections to the current lists to be published periodically in the International Journal of Systematic and Evo- lutionary Microbiology, may serve as the basis for the valid publication of the Candidatus names if and when the current propos- als to expand the type material for naming of prokaryotes to also include gene sequences of yet-uncultivated taxa is accepted by the International Committee on Systematics of Prokaryotes. Introduction of the category called Candidatus was first pro- morphology, basis of assignment as Candidatus, habitat, posed by Murray and Schleifer in 1994 [1]. The provisional metabolism and more. However, no such lists have yet been status Candidatus was intended for putative taxa of any rank published in the journal. that could not be described in sufficient details to warrant Currently, the nomenclature of Candidatus taxa is not covered establishment of a novel taxon, usually because of the absence by the rules of the Prokaryotic Code. -
Bacterial Diversity in Amblyomma Americanum (Acari: Ixodidae) with Afocusonmembersofthegenusrickettsia
VECTOR-BORNE DISEASES,SURVEILLANCE,PREVENTION Bacterial Diversity in Amblyomma americanum (Acari: Ixodidae) With aFocusonMembersoftheGenusRickettsia 1 2 1 STEPHANIE R. HEISE, M. S. ELSHAHED, AND S. E. LITTLE Department of Veterinary Pathobiology, Center for Veterinary Health Sciences, Oklahoma State University, Stillwater, OK 74078 J. Med. Entomol. 47(2): 258Ð268 (2010); DOI: 10.1603/ME09197 ABSTRACT The lone star tick, Amblyomma americanum (Acari: Ixodidae), is commonly reported from people and animals throughout the eastern U.S. and is associated with transmission of a number of emerging diseases. To better deÞne the microbial communities within lone star ticks, 16S rRNA gene based analysis using bacteria-wide primers, followed by sequencing of individual clones (n ϭ 449) was used to identify the most common bacterial operational taxonomic units (OTUs) present within colony-reared and wild A. americanum.Thecolony-rearedtickscontainedprimarilysequenceafÞl- iated with members of the genus Coxiella (89%; 81/91), common endosymbionts of ticks, and Brevibacterium (11%; 10/91). Similarly, analysis of clones from unfed wild lone star ticks revealed that 96.7% (89/92) of all the OTUs identiÞed were afÞliated with Coxiella-like endosymbionts, as compared with only 5.1Ð11.7% (5/98Ð9/77) of those identiÞed from wild lone star ticks after feeding. In contrast, the proportion of OTUs identiÞed as Rickettsia sp. in wild-caught ticks increased from 2.2% (2/92) before feeding to as high as 46.8% (36/77) after feeding, and all Rickettsia spp. sequences recovered were most similar to those described from the spotted fever group Rickettsia,speciÞcallyR. amblyo- mmii and R. massiliae.AdditionalcharacterizationoftheRickettsialestickcommunitybypolymerase chain reaction, cloning, and sequencing of 17 kDa and gltA genes conÞrmed these initial Þndings and suggested that novel Rickettsia spp. -
Detection of Multiple Intracellular Bacterial Pathogens in Haemaphysalis Flava Ticks Collected from Hedgehogs in Central China
pathogens Article Detection of Multiple Intracellular Bacterial Pathogens in Haemaphysalis flava Ticks Collected from Hedgehogs in Central China Li-Zhu Fang 1,†, Si-Cong Lei 1,2,†, Zhi-Jian Yan 3, Xiao Xiao 1,4, Jian-Wei Liu 1, Xiao-Qing Gong 1, Hao Yu 1 and Xue-Jie Yu 1,* 1 State Key Laboratory of Virology, School of Health Sciences, Wuhan University, Wuhan 430071, China; [email protected] (L.-Z.F.); [email protected] (S.-C.L.); [email protected] (X.X.); [email protected] (J.-W.L.); [email protected] (X.-Q.G.); [email protected] (H.Y.) 2 The First Affiliated Hospital, Sun Yat-sen University, Guangzhou 510000, China 3 Sixth People’s Hospital, Qingdao 266000, China; [email protected] 4 Lab Animal Research Center, Hubei University of Chinese Medicine, Wuhan 430000, China * Correspondence: [email protected] † These authors contributed equally to this work. Abstract: Tickborne intracellular bacterial pathogens including Anaplasma, Coxiella burnetti, Ehrlichia, and Rickettsia cause emerging infectious diseases worldwide. PCR was used to amplify the genes of these pathogens in Haemaphysalis flava ticks collected from hedgehogs in Central China. Among 125 samples including 20 egg batches, 24 engorged females, and 81 molted male and female adult ticks, the DNA sequences and phylogenetic analysis showed that the minimum infection rate of the ticks was 4% (5/125) for A. bovis, 3.2% (4/125) for C. burnetti, 9.6%, (12/125) for E. ewingii, and Citation: Fang, L.-Z.; Lei, S.-C.; Yan, 5.6% for Rickettsia including R. japonica (3.2%, 4/125) and R. -
Ru 2015 150 263 a (51) Мпк A61k 31/155 (2006.01)
РОССИЙСКАЯ ФЕДЕРАЦИЯ (19) (11) (13) RU 2015 150 263 A (51) МПК A61K 31/155 (2006.01) ФЕДЕРАЛЬНАЯ СЛУЖБА ПО ИНТЕЛЛЕКТУАЛЬНОЙ СОБСТВЕННОСТИ (12) ЗАЯВКА НА ИЗОБРЕТЕНИЕ (21)(22) Заявка: 2015150263, 01.05.2014 (71) Заявитель(и): НЕОКУЛИ ПТИ ЛТД (AU) Приоритет(ы): (30) Конвенционный приоритет: (72) Автор(ы): 01.05.2013 AU 2013901517 ПЕЙДЖ Стефен (AU), ГАРГ Санджай (AU) (43) Дата публикации заявки: 06.06.2017 Бюл. № 16 RU (85) Дата начала рассмотрения заявки PCT на национальной фазе: 01.12.2015 (86) Заявка PCT: AU 2014/000480 (01.05.2014) 2015150263 (87) Публикация заявки PCT: WO 2014/176634 (06.11.2014) Адрес для переписки: 190000, Санкт-Петербург, Box-1125, "ПАТЕНТИКА" A (54) СПОСОБЫ ЛЕЧЕНИЯ БАКТЕРИАЛЬНЫХ ИНФЕКЦИЙ (57) Формула изобретения 1. Способ лечения или профилактики бактериальной колонизации или инфекции у субъекта, включающий стадию: введения субъекту терапевтически эффективного количества робенидина или его терапевтически приемлемой соли, причем указанная A бактериальная колонизация или инфекция вызвана бактериальным агентом. 2. Способ по п. 1, отличающийся тем, что субъект выбран из группы, включающей: человека, животных, принадлежащих видам семейства псовых, кошачьих, крупного рогатого скота, овец, коз, свиней, птиц, рыб и лошадей. 3. Способ по п. 1, отличающийся тем, что робенидин вводят субъекту в дозе в диапазоне от 0,1 до 250 мг/кг массы тела. 4. Способ по любому из пп. 1-3, отличающийся тем, что бактериальный агент является 2015150263 грамположительным. 5. Способ по п. 4, отличающийся тем, что бактериальный агент выбран из