Findings Magazine

Total Page:16

File Type:pdf, Size:1020Kb

Findings Magazine FindingsFALL 2017 U.S. DEPARTMENT OF HEALTH AND HUMAN SERVICES National Institutes of Health National Institute of General Medical Sciences features 1 Protein Paradox: Enrique De La Cruz Aims to Understand Actin 18 The Science of Size: Rebecca Heald Explores Size Control in Amphibians articles 5 A World Without Pain 6 Demystifying General Anesthetics 10 There’s an “Ome” for That —TORSTEN WITTMANN, UNIVERSITY OF CALIFORNIA, SAN FRANCISCO ON THE COVER This human skin cell was bathed 17 Lighting Up the Promise of Gene Therapy in a liquid containing a growth factor. The procedure for Glaucoma triggered the formation of specialized protein structures that enable the cell to move. We depend on our cells 24 NIGMS Is on Instagram! being able to move for basic functions such as the healing of wounds and the launch of immune responses. departments 3 Cool Tools: High-Resolution Microscopy— Editor In Living Color Chris Palmer 9 Spotlight on Videos: Scientists in Action Contributing Writers Carolyn Beans 14 S potlight on the Cell: The Extracellular Matrix, Kathryn Calkins Emily Carlson a Multitasking Marvel Alisa Zapp Machalek Chris Palmer Erin Ross Ruchi Shah activities Production Manager 22 Superstars of Science Quiz Susan Athey Online Editor The Last Word (inside back cover) Susan Athey Find Us At Image credits: Unless otherwise credited, images are royalty-free stock images. https://twitter.com/nigms https://www.facebook.com/nigms.nih.gov Produced by the Offce of Communications and Public Liaison https://www.instagram.com/nigms_nih National Institute of General Medical Sciences National Institutes of Health https://www.youtube.com/user/NIGMS U.S. Department of Health and Human Services More stories on our Biomedical Beat blog https://www.nigms.nih.gov/fndings https://biobeat.nigms.nih.gov Protein Paradox: Enrique De La Cruz Aims to Understand Actin BY EMILY CARLSON But De La Cruz isn’t a profes- sional performer. He’s a molecular biophysicist at Yale University. The show-and-tell performance was part of a scientifc lecture on a paradox De La Cruz has studied for more than 10 years—how a chain of molecules, called actin, that is strong enough to support a cell can break so easily. “I beneft from seeing and holding things as much as anyone else,” he says, explaining that the props help people—even scientists—under- stand his research. By his own account, De La Cruz is an unlikely scientist. A frst- generation Cuban-American, he grew up in and around Newark, New Jersey. Few of his friends earned more than a high school — XIAOWEI ZHUANG, HARVARD UNIVERSITY, AND NATURE PUBLISHING GROUP diploma. De La Cruz never thought Actin (blue) and other proteins support a cell’s structure similar to the way bones he’d end up running his own lab at support our bodies. an Ivy League research university. As a young adult, he recalls, Enrique De La Cruz stood off to the side in a packed room. “It wasn’t even on my radar as As he waited for his turn to speak, he stroked the beads of a necklace. a possibility.” Was he nervous? Quietly praying? When he took center stage, the purpose Although discovering new details about biology keeps his job of the strand became clear. exciting, he said sharing lessons Like a magician—and dressed all in black—De La Cruz held up the he’s learned with students and other aspiring scientists makes necklace with two hands so everyone, even those sitting in the back, could it truly rewarding. see it. It was made of snap-together beads. De La Cruz waved the strand. It wiggled in different directions. Then, with no sleight of hand, he popped Inner City to Ivy League off one of the beads. The necklace broke in two. De La Cruz’s frst taste of research For the next hour, De La Cruz pulled out one prop after another: a piece came during his senior year of high school, when he participated in of rope from his pocket, a pencil tucked behind his ear and even a fresh a work-study program at a nearby spear of asparagus stuffed in his backpack. At one point, De La Cruz pharmaceutical company. He tested assembled a conga line with people in the front row. chemical compounds for their Findings | FALL 2017 1 effects on cholesterol in the blood- their shapes. The flaments also Instead of feeling like stream. Although the project was play a central role in muscle con- unrelated to what he studies now, traction. Because of these tasks, he didn’t belong, he De La Cruz said the experience the flaments must be strong. made science tangible, partly by Yet, the flaments can break. felt empowered to seek putting people and faces to In many cases, they must break the process. to carry out their functions. To out the knowledge and Because his parents—a welder assemble new chains, the flaments and a hospital pharmacist—instilled recycle their parts. Numerous guidance he needed in De La Cruz and his siblings the proteins facilitate this process in importance of education, he headed cells. Some of the proteins break to succeed. to college. But he stayed close to the flament chains to make more home. He applied only to Rutgers ends, which allows the chains to University. Interested in both shrink more rapidly and recycle medicine and teaching, De La Cruz parts faster. RESEARCHER ultimately decided to pursue a To investigate how actin flaments career doing research on basic life break, De La Cruz has relied heavily Enrique M. De La Cruz processes in an academic setting. on techniques, expertise and But his path to becoming a published papers from other felds. scientist almost hit a dead end “An hour in the library can save when De La Cruz started graduate a week in the lab,” De La Cruz says. school at Johns Hopkins University “There’s a lot of information already in Baltimore, Maryland. out there, and it’s always useful “On my frst exam—in a subject to look at others’ studies.” I wasn’t very familiar with—I scored Over the years, he and his team an 18.5,” he says. “The mean of the have pieced together many details class was an 88! I thought, ‘That’s on how actin flaments form it. I had my chance. This experiment and break. is over.’” “Curiosity is what gets you into His course instructor told him science and what keeps it fun,” —JEFF FOLEY, AMER ICAN HEART ASSOCIATION not to stress about the score and he says. “You’re going to know GRE W U P IN to work harder at the things he something in a few months that didn’t know. De La Cruz knew this you don’t know today.” Newark and Kearny, New Jersey was true: He had aced an exam Individual actin molecules, like JOB SITE in biophysical chemistry, a subject the pop-beads of the necklace, Yale University he was interested in and already string together with the help of salt. knew a lot about. The salt helps “glue” the chain links FAVORITE FOOD Instead of feeling like he didn’t together, De La Cruz explains. His mom ’-s Spanish style polenta belong, he felt empowered to seek By integrating computer models (harina de maíz) out the knowledge and guidance with biochemical and biophysical he needed to succeed. experiments, the De La Cruz team IF I WASN ’T A SCIENTIST I WOULD BE learned where the salt connects Managing a vinyl record shop to actin molecules. Each salt-actin Actin Action joint is tight, making the chain stiff, FAVORITE SONG Much of De La Cruz’s career has like the pencil prop De La Cruz “Do Anything You Wanna Do ” focused on studying actin, one of showed the crowd. But a protein by Eddie & the Hot Rods the most prevalent proteins on the called coflin can push off the salt, planet. Actin molecules form long, weakening the joint so it becomes thin chains that grow and shrink wiggly—De La Cruz demonstrated from the ends. These chains, or this with the rope—and more likely flaments, allow cells to move and to come apart. contract, and they help cells keep 22 National Institute of General Medical Sciences cool tools High-Resolution Microscopy— Filament breaks occur in Living Color where different sections BY ALISA ZAPP MACHALEK meet, similar to the way Cell biologists would love an asparagus spear to shrink themselves down and actually see, touch and hear cells’ snaps where the hard inner workings. Because that’s impossible, they have developed an ever-growing collection of part meets the soft, microscopes to study cellular innards from the outside. Using feshy part. these powerful tools, researchers can exhaustively inventory the molecular bits and pieces that make up cells, eavesdrop on cellular com- munication and spy on cells as they Because a flament has thousands The research team is now adapt to changing environments. of actin molecules and joints, some planning to use computer modeling In recent years, scientists have sections can be weak and wiggly, to better understand the specifc developed new cellular imaging while others are stiff. Filament roles of the wiggly and stiff techniques that allow them to breaks occur where different flament sections during the visualize cells’ contents in ways sections meet, similar to the way breaking process. They’ll test the and at levels of detail never before an asparagus spear snaps where modeling results with carefully possible. Many of these techniques the hard, woody part meets the designed lab experiments. soft, feshy part.
Recommended publications
  • Spindle Assembly in Xenopus Egg Extracts
    Spindle Assembly in Xenopus Egg Extracts: Respective Roles of Centrosomes and Microtubule Self-Organization Rebecca Heald, Régis Tournebize, Anja Habermann, Eric Karsenti, and Anthony Hyman Cell Biology Program, European Molecular Biology Laboratory, 69117 Heidelberg, Germany Abstract. In Xenopus egg extracts, spindles assembled end–directed translocation of microtubules by cytoplas- around sperm nuclei contain a centrosome at each pole, mic dynein, which tethers centrosomes to spindle poles. while those assembled around chromatin beads do not. However, in the absence of pole formation, microtu- Poles can also form in the absence of chromatin, after bules are still sorted into an antiparallel array around addition of a microtubule stabilizing agent to extracts. mitotic chromatin. Therefore, other activities in addi- Using this system, we have asked (a) how are spindle tion to dynein must contribute to the polarized orienta- poles formed, and (b) how does the nucleation and or- tion of microtubules in spindles. When centrosomes are ganization of microtubules by centrosomes influence present, they provide dominant sites for pole forma- spindle assembly? We have found that poles are mor- tion. Thus, in Xenopus egg extracts, centrosomes are not phologically similar regardless of their origin. In all cases, necessarily required for spindle assembly but can regu- microtubule organization into poles requires minus late the organization of microtubules into a bipolar array. uring cell division, the correct organization of mi- and Lloyd, 1994). In the absence of centrosomes, bipolar crotubules in bipolar spindles is necessary to dis- spindle assembly seems to occur through the self-organiza- D tribute chromosomes to the daughter cells. The tion of microtubules around mitotic chromatin (McKim slow growing or minus ends of the microtubules are fo- and Hawley, 1995; Heald et al., 1996; Waters and Salmon, cused at each pole, while the plus ends interact with the 1997).
    [Show full text]
  • Mechanistic Mathematical Modeling of Spatiotemporal Microtubule Dynamics and Regulation in Vivo
    Research Collection Doctoral Thesis Mechanistic mathematical modeling of spatiotemporal microtubule dynamics and regulation in vivo Author(s): Widmer, Lukas A. Publication Date: 2018 Permanent Link: https://doi.org/10.3929/ethz-b-000328562 Rights / License: In Copyright - Non-Commercial Use Permitted This page was generated automatically upon download from the ETH Zurich Research Collection. For more information please consult the Terms of use. ETH Library diss. eth no. 25588 MECHANISTICMATHEMATICAL MODELINGOFSPATIOTEMPORAL MICROTUBULEDYNAMICSAND REGULATION INVIVO A thesis submitted to attain the degree of DOCTOR OF SCIENCES of ETH ZURICH (dr. sc. eth zurich) presented by LUKASANDREASWIDMER msc. eth cbb born on 11. 03. 1987 citizen of luzern and ruswil lu, switzerland accepted on the recommendation of Prof. Dr. Jörg Stelling, examiner Prof. Dr. Yves Barral, co-examiner Prof. Dr. François Nédélec, co-examiner Prof. Dr. Linda Petzold, co-examiner 2018 Lukas Andreas Widmer Mechanistic mathematical modeling of spatiotemporal microtubule dynamics and regulation in vivo © 2018 ACKNOWLEDGEMENTS We are all much more than the sum of our work, and there is a great many whom I would like to thank for their support and encouragement, without which this thesis would not exist. I would like to thank my supervisor, Prof. Jörg Stelling, for giving me the opportunity to conduct my PhD research in his group. Jörg, you have been a great scientific mentor, and the scientific freedom you give your students is something I enjoyed a lot – you made it possible for me to develop my own theories, and put them to the test. I thank you for the trust you put into me, giving me a challenge to rise up to, and for always having an open door, whether in times of excitement or despair.
    [Show full text]
  • Intracellular Scaling Mechanisms
    Downloaded from http://cshperspectives.cshlp.org/ on September 29, 2021 - Published by Cold Spring Harbor Laboratory Press Intracellular Scaling Mechanisms Simone Reber1,2 and Nathan W. Goehring3 1Max Planck Institute of Molecular Genetics and Cell Biology, 01307 Dresden, Germany 2Integrative Research Institute (IRI) for the Life Sciences, Humboldt-Universita¨t zu Berlin, 10115 Berlin, Germany 3MRC Laboratory of Molecular Cell Biology, University College London, WC1E 6BT London, United Kingdom Correspondence: [email protected] Organelle function is often directly related to organelle size. However, it is not necessarily absolute size but the organelle-to-cell-size ratio that is critical. Larger cells generally have increased metabolic demands, must segregate DNA over larger distances, and require larger cytokinetic rings to divide. Thus, organelles often must scale to the size of the cell. The need for scaling is particularly acute during early development during which cell size can change rapidly. Here, we highlight scaling mechanisms for cellular structures as diverse as centro- somes, nuclei, and the mitotic spindle, and distinguish them from more general mechanisms of size control. In some cases, scaling is a consequence of the underlying mechanism of organelle size control. In others, size-control mechanisms are not obviously related to cell size, implying that scaling results indirectly from cell-size-dependent regulation of size- control mechanisms. cell is a highly organized unit in which We also know that cell size can vary dra- Afunctions are compartmentalized into spe- matically even within one organism. Xenopus cific organelles. Each cellular organelle carries laevis is an extreme example. The smallest so- out a distinct function, which is not only related matic cells are only a few micrometers in diam- to its molecular composition but, in many cas- eter, whereas the oocyte and one-cell embryo es, also to its size.
    [Show full text]
  • A Lab Co-Op Helps Young Faculty Members to Thrive
    WORLD VIEW A personal take on events A lab co-op helps young MARK JOSEPH HANSON faculty members to thrive Linking a lab with others fosters crucial camaraderie, collaboration and productivity, writes Rebecca Heald. hen I started my lab at the University of California, Berkeley, form the group. Proximity is key. I advise postdocs who want to follow two decades ago, what terrified me most was the thought that conventional paths in academia to prioritize jobs in departments that I alone was responsible for everything — from formulating are hiring lots of junior faculty members, and to avoid institutions — Wsuccessful PhD-thesis projects to picking the right freezer. Fortunately, even prestigious ones — that force assistant professors to compete with my stress was mitigated because, within a year, two new assistant profes- each other. That makes everyone in the lab miserable. sors, Matt Welch and Karsten Weis, were hired and given lab space next Matt, Karsten and I had each previously experienced collaborative to mine. Although we all focused on different areas of cell biology, we environments — Matt at the University of California, San Francisco; me shared common interests and values and quickly saw benefits in joining at the European Molecular Biology Laboratory in Heidelberg, Germany; forces. We called our joint groups the Trilab. and Karsten at both — which helped us conceive of the Trilab. We were Matt, Karsten and I saved space by sharing chemical and microscopy exceedingly fortunate to be at the same career stage at the same place and rooms, and saved money by pooling equipment. We even tore down a time.
    [Show full text]
  • Microtubules: 50 Years on from the Discovery of Tubulin
    PERSPECTIVES microtubule dynamics and organization VIEWPOINT emerge from a defined set of proteins Microtubules: 50 years on from through reconstitution experiments. Jonathon Howard. One of the big questions back when I got into the microtubule the discovery of tubulin business, around 1990, was how motor proteins such as kinesin and dynein use Gary Borisy, Rebecca Heald, Jonathon Howard, Carsten Janke, ATP hydrolysis to generate force for Andrea Musacchio and Eva Nogales transport along microtubules (such as axonal transport) or for cell motility (such as Abstract | Next year will be the 50th anniversary of the discovery of tubulin. ciliary or flagellar motion). The interaction To celebrate this discovery, six leaders in the field of microtubule research reflect of kinesin with microtubules was a model on key findings and technological breakthroughs over the past five decades, system, because it was clear that only a discuss implications for therapeutic applications and provide their thoughts on relatively small number of kinesins must what questions need to be addressed in the near future. be capable of moving small vesicles along microtubules. A related question was how microtubule growth and shrinkage could Identifying the main component of Rebecca Heald. In the mid-1990s, one generate force to move chromosomes microtubules was obviously the pressing question was why microtubules during mitosis. Polymerization and pressing task in the field around 50 years ago. in cells were so much more dynamic than depolymerization forces were very What key questions were being pursued microtubules assembled from purified mysterious: how could you hold on to the when you entered the arena of tubulin.
    [Show full text]
  • Program Book
    The Genetics Society of America Conferences 15th International Xenopus Conference August 24-28, 2014 • Pacific Grove, CA PROGRAM GUIDE LEGEND Information/Guest Check-In Disabled Parking E EV Charging Station V Beverage Vending Machine N S Ice Machine Julia Morgan Historic Building W Roadway Pedestrian Pathway Outdoor Group Activity Area Program and Abstracts Meeting Organizers Carole LaBonne, Northwestern University John Wallingford, University of Texas at Austin Organizing Committee: Julie Baker, Stanford Univ Chris Field, Harvard Medical School Carmen Domingo, San Francisco State Univ Anna Philpott, Univ of Cambridge 9650 Rockville Pike, Bethesda, Maryland 20814-3998 Telephone: (301) 634-7300 • Fax: (301) 634-7079 E-mail: [email protected] • Web site: genetics-gsa.org Thank You to the Following Companies for their Generous Support Platinum Sponsor Gold Sponsors Additional Support Provided by: Carl Zeiss Microscopy, LLC Monterey Convention & Gene Tools, LLC Visitors Bureau Leica Microsystems Xenopus Express 2 Table of Contents General Information ........................................................................................................................... 5 Schedule of Events ............................................................................................................................. 6 Exhibitors ........................................................................................................................................... 8 Opening Session and Plenary/Platform Sessions ............................................................................
    [Show full text]
  • OCTOBER 2006 ASCB NEWSLETTER 3 Life and Place Work and Parenting in Greater Will Take a Toll, There Is Also a Relatively Harmony
    ASCB OCTOBER 2006 NEWSLETTER VOLUME 29, NUMBER 10 Women in Science: A ASCB Launches Disappearing Image & Video Library Act? A New Electronic Resource Page 2 Frustrated in their search for images or videos to (IVL). As part of its mission to teach cell illustrate cell organelles and functions, many cell biology to a broad range of science students Pope Questions biology educators, researchers, around the world, the ASCB has and students have given up. The created a new educational tool Role of Science process has often been extremely that illustrates the cell in a variety Page 15 difficult, if not impossible, for of multimedia formats. The IVL’s both historical micrographs and easy-to-use digital library format cutting-edge discoveries. And offers a growing collection of Take the Time when such visual representations items, all freely accessible on the cannot be obtained from credible Internet at http://cellimages.ascb. to Smell the sources, science education org. suffers. After all, cell biology is a Farquhar MG, Palade GE. The IVL is governed by two Roses? Epithelial cells from the proxi- foundation science, a cornerstone mal tubule of rat kidney dem- boards. A Scientific Advisory Page 24 for students and researchers in all onstrating tight junction seal Board (SAB), composed of biological professions. prominent academic scientists, Now ASCB offers an antidote for frustration, works closely with Curator David Ennist and Inside and a source for peer-reviewed, high-quality Assistant Curator Cindy Boeke, to develop the visual and written
    [Show full text]
  • Engineering Spatiotemporal Organization and Dynamics in Synthetic Cells
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
    [Show full text]
  • 2013 Faseb Science Research Conferences Advisory Committee Meeting
    Proposal #: 15-19 2013 FASEB SCIENCE RESEARCH CONFERENCES ADVISORY COMMITTEE MEETING TOPIC FOR CONSIDERATION TOPIC NAME: MITOSIS: SPINDLE ASSEMBLY AND FUNCTION PREVIOUS TITLE: Mitosis: Spindle Assembly and Function SUBMITTED BY: Erich Nigg, Biozentrum der Universitat Basel Rebecca Heald, University of California-Berkeley YEAR REQUESTED FOR 2015 SCHEDULING: SITE REQUESTS: 1. Portugal 2. Nassau, Bahamas 3. Big Sky, MT DATE REQUESTS: 1. June 21-27, 2015 2. June 28-July 3, 2015 3. September 6-12, 2015 YEAR(S) CONFERENCE 2007, 2009, 2012 HAS BEEN HELD: NOTES: Avoid mid-to-late June dates if Gordon Conferences has similar conferences at that time. FASEB SRC Proposal Instructions Attached are the instructions and requirements for submitting a FASEB SRC proposal. Please complete sections 1-6 before submitting your information. Please submit your proposal by September 23, 2013 in order to be considered for the 2015 SRC Series. Proposals will be reviewed by the FASEB Science Research Conference Advisory Committee in mid November. Shortly thereafter, you will receive a letter with the committee’s decision on your submitted proposal. By the end of January 2014 you will receive a second letter which will indicate the location and date for your conference as well as the name of your assigned Conference Manager. Once your conference is approved, your conference manager will schedule a kick-off conference call to discuss timelines, expectations, instructions on fund raising, and program management to help make your organization process successful. Section 1: Organizer Responsibilities By submitting a FASEB Science Research Conference proposal for consideration by the FASEB SRC Advisory Committee, the organizer(s) accepts the responsibility for producing a successful conference.
    [Show full text]
  • 2015 Annual Report
    RIKEN Center for Developmental Biology http://www.cdb.riken.jp/ RIKEN CENTER FOR DEVELOPMENTAL BIOLOGY 2-2-3 MINATOJIMA-MINAMIMACHI, CHUO-KU KOBE 650-0047 JAPAN PHONE: +81-78-306-0111 FAX: +81-78-306-0101 EMAIL: [email protected] 2015 Annual Report 2015 RIKEN Center for Developmental Biology 2015 Annual Report On The Cover 3D reconstructed image of developing mouse lung at E16.5 showing localization of epithelial and neuroen- docrine cells. Image: Laboratory for Lung Development Printed in Japan using soy inks, waterless printing methods, and paper from sustainable resources. RIKEN 2016-017 Contents 2015 2 Message from the Director 32 Hippocampal neurons from hES cells 54 Sensory Development Annual Report Lab. for Organogenesis and Neurogenesis; In Vitro Raj LADHER 4 Organizational Chart Histogenesis 6 2015 at the CDB 55 Cell Asymmetry 34 Putting a new spin on autonomously organized Fumio MATSUZAKI RIKEN epithelial movement 56 Lung Development Center for Research Highlights Lab. for Histogenetic Dynamics Mitsuru MORIMOTO Developmental Biology 36 Pulmonary neuroendocrine cell clusters at 57 Growth Control Signaling 10 Oocyte maturation directed by PLK1 airway branches Takashi NISHIMURA Lab. for Chromosome Segregation Lab. for Lung Development 58 Pluripotent Stem Cell Studies 12 Generating 3D cerebellar structure and 38 Doubling teeth from single tooth germ Hitoshi NIWA functional cerebellar neurons Lab. for Organ Regeneration 59 Early Embryogenesis Lab. for Organogenesis and Neurogenesis 40 Transplantation of hESC-derived retinal tissue in Guojun SHENG 14 Induction of retinal tissue with ciliary margin primate models of retinitis pigmentosa 60 Retinal Regeneration from hESCs Lab. for Retinal Regeneration Masayo TAKAHASHI Lab.
    [Show full text]
  • Transfection of Choanoflagellates Illuminates Their Cell Biology and the Ancestry of Animal Septins
    M BoC | ARTICLE Transfection of choanoflagellates illuminates their cell biology and the ancestry of animal septins David S. Booth†, Heather Szmidt-Middleton, and Nicole King‡,* Howard Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720 ABSTRACT As the closest living relatives of animals, choanoflagellates offer unique insights Monitoring Editor into animal origins and core mechanisms underlying animal cell biology. However, unlike tra- Doug Kellogg ditional model organisms, such as yeast, flies, and worms, choanoflagellates have been re- University of California, Santa Cruz fractory to DNA delivery methods for expressing foreign genes. Here we report a robust method for expressing transgenes in the choanoflagellateSalpingoeca rosetta, overcoming Received: Aug 16, 2018 barriers that have previously hampered DNA delivery and expression. To demonstrate how Revised: Sep 20, 2018 this method accelerates the study of S. rosetta cell biology, we engineered a panel of fluores- Accepted: Sep 24, 2018 cent protein markers that illuminate key features of choanoflagellate cells. We then investi- gated the localization of choanoflagellate septins, a family of GTP-binding cytoskeletal pro- teins that are hypothesized to regulate multicellular rosette development in S. rosetta. Fluorescently tagged septins localized to the basal poles of S. rosetta single cells and rosettes in a pattern resembling septin localization in animal epithelia. The establishment of transfec- tion in S. rosetta and its application to the study of septins represent critical advances in the use of S. rosetta as an experimental model for investigating choanoflagellate cell biology, core mechanisms underlying animal cell biology, and the origin of animals.
    [Show full text]
  • REBECCA WRIGHT HEALD Professor Division of Cell and Developmental Biology Molecular and Cell Biology Department University of California, Berkeley
    REBECCA WRIGHT HEALD Professor Division of Cell and Developmental Biology Molecular and Cell Biology Department University of California, Berkeley Education YEAR INSTITUTION AND LOCATION DEGREE FIELD OF STUDY MENTOR completed Hamilton College, Clinton NY B.A. 1985 Chemistry Harvard University, Boston, MA Ph.D. 1993 Cell Physiology Frank McKeon European Molecular Biology postdoc 1997 Cell Biology Eric Karsenti Laboratory, Heidelberg, Germany Personal Statement The goal of my laboratory is to elucidate the molecular mechanisms of cell division and size control. Our approaches take advantage of in vitro systems, particularly cytoplasmic extracts prepared from eggs of the frog Xenopus laevis that reconstitute mitotic chromosome condensation and spindle assembly and function in vitro. To study mechanisms of spindle and organelle size control, we have utilized a smaller, related frog, Xenopus tropicalis, to investigate interspecies scaling, and extracts prepared from fertilized eggs at different stages of embryogenesis to study developmental scaling. Our research has provided novel insight into how cell/organelle scaling contributes to intracellular morphogenesis and cell division, processes essential for viability and development, and defective in human diseases including cancer. We currently pursue projects in two broad areas. The first is to elucidate mitotic mechanisms, characterize the key players that define spindle architecture, and advance reconstitution experiments toward a systems-level understanding of the spindle. The second is to investigate size control mechanisms at the subcellular, cellular and organism level, developing tools for chromosome labeling and mutagenesis in Xenopus, and leveraging phylogenetic relationships among different frog species. Our research is highly collaborative and provides new insight into the underlying principles of spindle assembly and biological size control, as well as the molecular basis of variation that contributes to genomic instability and evolution.
    [Show full text]