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Evolution of Isoprenyl Diphosphate Synthase-Like Terpene
www.nature.com/scientificreports OPEN Evolution of isoprenyl diphosphate synthase‑like terpene synthases in fungi Guo Wei1, Franziska Eberl2, Xinlu Chen1, Chi Zhang1, Sybille B. Unsicker2, Tobias G. Köllner2, Jonathan Gershenzon2 & Feng Chen1* Terpene synthases (TPSs) and trans‑isoprenyl diphosphate synthases (IDSs) are among the core enzymes for creating the enormous diversity of terpenoids. Despite having no sequence homology, TPSs and IDSs share a conserved “α terpenoid synthase fold” and a trinuclear metal cluster for catalysis, implying a common ancestry with TPSs hypothesized to evolve from IDSs anciently. Here we report on the identifcation and functional characterization of novel IDS-like TPSs (ILTPSs) in fungi that evolved from IDS relatively recently, indicating recurrent evolution of TPSs from IDSs. Through large-scale bioinformatic analyses of fungal IDSs, putative ILTPSs that belong to the geranylgeranyl diphosphate synthase (GGDPS) family of IDSs were identifed in three species of Melampsora. Among the GGDPS family of the two Melampsora species experimentally characterized, one enzyme was verifed to be bona fde GGDPS and all others were demonstrated to function as TPSs. Melampsora ILTPSs displayed kinetic parameters similar to those of classic TPSs. Key residues underlying the determination of GGDPS versus ILTPS activity and functional divergence of ILTPSs were identifed. Phylogenetic analysis implies a recent origination of these ILTPSs from a GGDPS progenitor in fungi, after the split of Melampsora from other genera within the class of Pucciniomycetes. For the poplar leaf rust fungus Melampsora larici-populina, the transcripts of its ILTPS genes were detected in infected poplar leaves, suggesting possible involvement of these recently evolved ILTPS genes in the infection process. -
Flax Rust and Its Control
-1 I , r TECHNICAL BULLETIN 36 MARCH 1926 University of Minnesota Agricultural Experiment Station IN CO-OPERATION WITH UNITED STATES DEPARTMENT OF AGRICULTURE, BUREAU OF PLANT INDUSTRY Flax Rust and its Control A. W. Henry Division of Plant Pathology and Botany UNIVERSITY FARM, ST. PAUL AGRICULTURAL EXPERIMENT STATION ADMINISTRATIVE OFFICERS W. C. COFFEY, M.S., Director ANDREW Boss, Vice-Director F. W. PECK, M.S., Director of Agricultural Extension and Farmers' Institutes C. G. SELVIG, M.A., Superintendent, Northwest Substation, Crookston P. E. MILLER, M.Agr., Superintendent, West Central Substation, AIorris 0. I. BERGH, B.S.Agr., Superintendent, North Central Substation, Grand Rapids M. J. THOMPSON, Superintendent, Northeast Substation, Duluth R E. HODGSON, B.S. in Agr., Superintendent, Southeast Substation, Waseca RAPHAEL ZON, F.E., Director, Forest Experiment Station, Cloquet F. E. HARALSON, Assistant Superintendent, Fruit Breeding Farm, Zumbra Heights, (P.O. Excelsior) W. P. KIRKWOOD, M.A., Editor, and Chief, Division of Publications ALICE MCFEELY, Assistant Editor of Bulletins HARRIET W. SEWALL, B.A., Librarian T. J. HORTON, Photographer R. A. GORTNER, Ph.D., Chief, Division of Agricultural Biochemistry J. D. BLACK, Ph.D., Chief, Division of Agricultural Economics WILLIAM Boss, Chief, Division of Agricultural Engineering ANDREW Boss, Chief, Division of Agronomy and Farm Management W. H. PETERS, M.Agr., Chief, Division of Animal Husbandry FRANCIS JAGER, Chief, Division of Bee Culture C. H. EcKLEs, M.S., D.Sc., Chief, Division of Dairy Husbandry R. N. CHAPMAN, Ph.D., Chief Division of Entomology and Economic Zoology HENRY ScH/Arrz, Ph.D., Chief, Division of Forestry W. H. ALDERMAN, B.S.A., Chief, Division of Horticulture E. -
Structural Genomics Applied to the Rust Fungus Melampsora Larici-Populina
www.nature.com/scientificreports OPEN Structural genomics applied to the rust fungus Melampsora larici- populina reveals two candidate efector proteins adopting cystine knot and NTF2-like protein folds Karine de Guillen1, Cécile Lorrain2, Pascale Tsan3, Philippe Barthe1, Benjamin Petre2, Natalya Saveleva2, Nicolas Rouhier2, Sébastien Duplessis2, André Padilla1 & Arnaud Hecker2* Rust fungi are plant pathogens that secrete an arsenal of efector proteins interfering with plant functions and promoting parasitic infection. Efectors are often species-specifc, evolve rapidly, and display low sequence similarities with known proteins. How rust fungal efectors function in host cells remains elusive, and biochemical and structural approaches have been scarcely used to tackle this question. In this study, we produced recombinant proteins of eleven candidate efectors of the leaf rust fungus Melampsora larici-populina in Escherichia coli. We successfully purifed and solved the three- dimensional structure of two proteins, MLP124266 and MLP124017, using NMR spectroscopy. Although both MLP124266 and MLP124017 show no sequence similarity with known proteins, they exhibit structural similarities to knottins, which are disulfde-rich small proteins characterized by intricate disulfde bridges, and to nuclear transport factor 2-like proteins, which are molecular containers involved in a wide range of functions, respectively. Interestingly, such structural folds have not been reported so far in pathogen efectors, indicating that MLP124266 and MLP124017 may bear novel functions related to pathogenicity. Our fndings show that sequence-unrelated efectors can adopt folds similar to known proteins, and encourage the use of biochemical and structural approaches to functionally characterize efector candidates. To infect their host, flamentous pathogens secrete efector proteins that interfere with plant physiology and immunity to promote parasitic growth1. -
Charles Darwin Charles Darwin , Edited by Frederick Burkhardt , James Secord , the Editors of the Darwin Correspondence Project Frontmatter More Information
Cambridge University Press 978-0-521-85931-8 — The Correspondence of Charles Darwin Charles Darwin , Edited by Frederick Burkhardt , James Secord , The Editors of the Darwin Correspondence Project Frontmatter More Information THE CORRESPONDENCE OF CHARLES DARWIN Editors FREDERICK BURKHARDT DUNCAN M. PORTER SHEILA ANN DEAN SAMANTHA EVANS SHELLEY INNES ALISON PEARN ANDREW SCLATER PAUL WHITE Associate Editors ANNE SCHLABACH BURKHARDT ROSEMARY CLARKSON RUTH GOLDSTONE MURIEL PALMER ELLIS WEINBERGER © in this web service Cambridge University Press www.cambridge.org Cambridge University Press 978-0-521-85931-8 — The Correspondence of Charles Darwin Charles Darwin , Edited by Frederick Burkhardt , James Secord , The Editors of the Darwin Correspondence Project Frontmatter More Information This edition of the Correspondence of Charles Darwin is sponsored by the American Council of Learned Societies. Its preparation is made possible by the co-operation of Cambridge University Library and the American Philosophical Society. Advisory Committees for the edition, appointed by the Council, have the following members: United States Committee British Committee Whitfield J. Bell Jr Gillian Beer Frederick B. Churchill W. F. Bynum William T. Golden Owen Chadwick John C. Greene Peter J. Gautrey Sandra Herbert Richard Darwin Keynes Frank H. T. Rhodes Desmond King-Hele Marsha Richmond G. E. R. Lloyd Support for editing has been received from the Alfred P. Sloan Foundation, the Andrew W. Mellon Foundation, the National Endowment for the Humanities, the National Science Foundation, the Pew Charitable Trusts, the British Academy, the British Ecological Society, the Isaac Newton Trust, the Natural Environment Research Council, the Royal Society of London, the Stifterverband f¨ur die Deutsche Wissenschaft, and the Wellcome Trust. -
Physiologic Specialization of Melampsora Lini on Linum Usitatissimum '
PHYSIOLOGIC SPECIALIZATION OF MELAMPSORA LINI ON LINUM USITATISSIMUM ' By H. H. FLOR 2 Associate 'pathologist^ Division of Cereal Crops and Diseases^ Bureau of Plant Industry y United States Department of Agriculture INTRODUCTION Melampsora Uni (Pers.) Lev., the fungus that causes rust of culti- vated flax, Linum usitatissimum L., occurs in all the major seed flax- and fiber-flax-producing areas of the world. Injury to the seed crop results from a reduction in the amount of foliage and from the utili- zation by the fungus of some of the food of the host plant. In addition to interfering with the normal photosynthetic metaboUsm of the host plant, rust on fiber flax injures the quality by causing breakage of fibers and preventing normal retting, thus producing what is known as ''measly'' fibers (23)} Consequently a small amount of infection may injure the quality of a fiber-flax crop, while it is only under epidemic conditions that the rust may be destructive to seed flax. Only occasionally is flax rust very destructive in Minnesota and the Dakotas, where most of the domestic flaxseed is grown. However, it sometimes occurs in epidemic form in these areas, and Brentzel ^ and Hart (9) have reported losses ranging from a trace to 100 percent. Measures that have been recommended for the control of flax rust include early sowing, thorough cleaning of the seed, crop rotation, use of high, well-drained land, destruction or removal of infected straw, and the use of resistant varieties. Henry (10) considered the last- named method the most promising and found rust immunity to be inherited independently of morphologic type or wilt resistance. -
Linnean Vol 31 1 April 2015 Press File.Indd
TheNEWSLETTER AND PROCEEDI LinneanNGS OF THE LINNEAN SOCIETY OF LONDON Volume 31 Number 1 April 2015 Harbingers: Orchids: The Ternate Essay: Darwin’s evolutionary A botanical and Revisiting the timeline forefathers surgical liaison and more… A forum for natural history The Linnean Society of London Burlington House, Piccadilly, London W1J 0BF UK Toynbee House, 92–94 Toynbee Road, Wimbledon SW20 8SL UK (by appointment only) +44 (0)20 7434 4479 www.linnean.org [email protected] @LinneanSociety President SECRETARIES COUNCIL Prof Dianne Edwards CBE FRS Scienti fi c The Offi cers () Prof Simon Hiscock Vice Presidents President-Elect Dr Francis Brearley Prof Paul Brakefi eld Dr Malcolm Scoble Prof Anthony K Campbell Vice Presidents Editorial Dr Janet Cubey Ms Laura D'Arcy Prof Paul Brakefi eld Prof Mark Chase FRS Prof Jeff rey Duckett Prof Mark Chase Dr Pat Morris Dr John David Collecti ons Dr Thomas Richards Dr Anjali Goswami Dr John David Prof Mark Seaward Prof Max Telford Treasurer Strategy Dr Michael R Wilson Prof Gren Ll Lucas OBE Prof David Cutler Dr Sarah Whild Ms Debbie Wright THE TEAM Executi ve Secretary Librarian Conservator Dr Elizabeth Rollinson Mrs Lynda Brooks Ms Janet Ashdown Financial Controller & Deputy Librarian Digiti sati on Project Offi cer Membership Offi cer Mrs Elaine Charwat Ms Andrea Deneau Mr Priya Nithianandan Archivist Emerita Linnaean Project Conservators Buildings & Offi ce Manager Ms Gina Douglas Ms Helen Cowdy Ms Victoria Smith Ms Naomi Mitamura Special Publicati ons Manager Communicati ons & Events Ms Leonie Berwick Manager Mr Tom Simpson Manuscripts Specialist Dr Isabelle Charmanti er Room Hire & Membership Educati on Offi cer Assistant Mr Tom Helps Ms Hazel Leeper Editor Publishing in The Linnean Ms Gina Douglas The Linnean is published twice a year, in April and October. -
International Register (Updated March 5, 2021)
Last updated: March 5, 2021 © Mark L. DeBard, MD, Registrar & International Lilac Society Freek Vrugtman, Registrar Emeritus Assistant Registrars: Claire Fouquet, David Gressley, Tatyana Polyakova International Register and Checklist of Cultivar names in the Genus Syringa L. (Oleaceae) (“Work-in-Progress” Lilac Register) For information on title, copyright, address, table of content, acknowledgements, historical overview, and introduction see Introductory Pages. RELEASE NOTE: This release includes updates to the main Register PDF and Excel files, including a massive revision to the Russian cultivar information as a result of a detailed review by our Assistant Registrar, Tatyana Polyakova. In particular, the Latvian cultivars have been updated and many Kravchenko cultivars from Uzbekistan have been added or revised. Also, multiple cultivars from Kazakhstan as well as those of Makedonskaya and Ihara have been updated or added. In addition, the Registrars have decided to maintain the British English format of cultivar names, based on 40 years of tradition and worldwide usage of the names, while converting the text to American English. This primarily affects abbreviations in the cultivar names, such that in British English, Dr, Mr, Mrs, and Ms are all written without periods after them, but in both British and American English, Mons. and Pres. do have periods. There are actually rules governing this. This release is the basis for the identically dated printed hardcopy release of the Register. It has 3561 entries including 1223 registered lilacs (in bold), 640 more with established but non- registered names, and 669 more with non-established names. There are 1025 entries with synonyms or rejected or unacceptable names. -
Habitat Type and Interannual Variation Shape Unique Fungal Pathogen Communities on A
bioRxiv preprint doi: https://doi.org/10.1101/545632; this version posted July 7, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Habitat type and interannual variation shape unique fungal pathogen communities on a California native bunchgrass Johannah E. Farner1, Erin R. Spear1,2, Erin A. Mordecai1 1Biology Department, Stanford University, Stanford, California 94305 USA; 2 Smithsonian Tropical Research Institute, Panama City, Panama, Republic of Panama Author for correspondence: Johannah Farner E-mail: [email protected] Phone: 1 (805) 317 – 5432 1 bioRxiv preprint doi: https://doi.org/10.1101/545632; this version posted July 7, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Abstract The role of infectious disease in regulating host populations is increasingly recognized, but how environmental conditions affect pathogen communities and infection levels remains poorly understood. Over three years, we compared foliar disease burden, fungal pathogen community composition, and foliar chemistry in the perennial bunchgrass Stipa pulchra occurring in adjacent serpentine and nonserpentine grassland habitats with distinct soil types and plant communities. We found that serpentine and nonserpentine S. pulchra experienced consistent, low disease pressure associated with distinct fungal pathogen communities with high interannual species turnover. Additionally, plant chemistry differed with habitat type. -
Inheritance of Virulence of Melampsora Lini Race 218
Genetics Inheritance of Virulence of Melampsora lini Race 218 Glen D. Statler Professor, Department of Plant Pathology, North Dakota State University, Fargo, ND 58102. Journal Series Paper 878. Research was supported in part by Cooperative Agreement 12-14-3001-277 of the Science and Education Administration, United States Department of Agriculture. Accepted for publication 31 August 1978. ABSTRACT STATLER, G. D. 1979. Inheritance of virulence of Melampsora lini race 218. Phytopathology 69:257-259. 3 5 6 selfed and the progeny were host genes K, L', L', L', L , M, M' , M , A , N', P, P2, and P2. Virulence on A culture of race 218, Melampsora lini was 2 tested for virulence on flax lines each of which contained a pair of genes the line with N probably was conditioned by a single recessive gene since conditioning rust resistance. Race 218 was crossed with race 22, but only a there were only a few more cultures in the virulent category than would fit limited number of F, cultures were derived. Race 218 and all of the S, expected ratios. Two independently inherited recessive genes apparently cultures resulting from selfing race 218 were virulent on near-isogenic flax conditioned virulence on the line with L. Chi-square tests indicated that 2 and the P locus was lines containing L L6, L',7, L, L", M', m , Al', and P' indicating that the virulence on several lines with alleles at the L locus genes for virulence were homozygous. Race 218 also was virulent on the line linked. Usually virulence on most other lines with alleles at different loci with L"'. -
How Understand Cryptogams? the Development of Research Methods and Their Impact on the Knowledge of Cryptogams
How understand cryptogams? The development of research methods and their impact on the knowledge of cryptogams A tribute to Josef POELT Franz OBERWINKLER*1 Abstract: This article intends to shed light on increasing knowledge of cryptogam biology over 400 years of research. The progress in biological disciplines involved, is tightly bound to new research methods. Starting with recognizing algae, mosses, ferns, and fungi in the field, collecting and identifying them was a consequence. It required classifi- cations for handling the rapidly growing number of species. Soon, it became apparent that lightmicrocopy was an indispensable method of all kinds of cryptogam studies, especially for elucidating their cellular constructions, an essential basis for studying their functions. Electron microscopy broke down the limitations of magnification and resolution in light microscopy. The detection and understanding of subcellular structures revolutionized bio- logy as such, and that of cryptogams in particular. Now, physiological studies with chemi- cal and physicochemical methods of earlier days could be coupled more and more with structural characters of cell organelles. Increasing knowledge on metabolisms and appli- cable products strengthened efforts in biotechnology and led to new industrial disciplines. Surprisingly, sequencing techniques of nucleic acids were essentially developed in biolo- gy and not in chemistry. Their rapidly spreading application to all kinds of organisms, in- cluding cryptogams, is unique and marks a most revolutionary period in biology. It covers now developmental, metabolic, ecological, and evolutionary studies, and dominates biolo- gical research to a very high percentage. The mass of data produced since then, increasing continously, requires bioinformatics as an additional discipline in biology. -
El Evolucionismo
hm_evolucionismo2.pdf 1 9/26/19 2:37 PM Otros títulos publicados en esta colección: La publicación de la teoría de Charles Darwin supuso un antes y un después en el estudio de la vida en nuestro planeta. ¿De dónde Uruguay venimos?, ¿cómo hemos llegado hasta aquí? Sin embargo, este tipo Filipinas de preguntas no fueron respondidas sólo por Charles Darwin, sino también por autores que lo antecedieron, como Jean-Baptiste El futbol en América Latina Lamarck, por coetáneos, como Herbert Spencer, figura central en La globalización temprana la formulación del llamado darwinismo social, y por otros que Venezuela dieron continuidad a las tesis de Darwin o que, discutiendo con El evolucionismo La Guerra Fría en América Latina ellas, resultan fundamentales para entender la historia de la teoría Los derechos humanos en América evolutiva, de su recepción y de su difusión a escala global. Latina Estos asuntos son abordados en este libro junto a una explica- Colombia ción de los aportes de la moderna genética y, sobre todo, del signifi- Israel cado del descubrimiento de la molécula del ADN, en tanto jalones C Rusia del avance revolucionario de la teoría evolutiva. Autores, hallazgos M científicos, discusiones y polémicas se entrecruzan en un relato que El PRI Y reconstruye la historia del evolucionismo y su enorme impacto en El Derecho en Occidente las formas de pensar y entender el mundo. CM Estados Unidos de América MY El constitucionalismo en América Latina CY La migración México-Estados Unidos CMY El neoliberalismo K La Revolución cubana La literatura mexicana del siglo XX La expansión ferroviaria en América Miguel Ángel Puig-Samper Latina Bolivia mínima del evolucionismo Historia Argentina Perú Chile MIGUEL ÁNGEL PUIG-SAMPER Imagen de portada: Rythme, Joie de vivre, de EL COLEGIO DE MÉXICO Robert Delaunay (1930). -
Melampsora Spp.) David L
Comparative analysis of secreted protein evolution using expressed sequence tags from four poplar leaf rusts (Melampsora spp.) David L. Joly, Nicolas Feau, Philippe Tanguay, Richard Hamelin To cite this version: David L. Joly, Nicolas Feau, Philippe Tanguay, Richard Hamelin. Comparative analysis of secreted protein evolution using expressed sequence tags from four poplar leaf rusts (Melampsora spp.). BMC Genomics, BioMed Central, 2010, 11, 16 p. 10.1186/1471-2164-11-422. hal-02660329 HAL Id: hal-02660329 https://hal.inrae.fr/hal-02660329 Submitted on 30 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Joly et al. BMC Genomics 2010, 11:422 http://www.biomedcentral.com/1471-2164/11/422 RESEARCH ARTICLE Open Access Comparative analysis of secreted protein evolution using expressed sequence tags from four poplar leaf rusts (Melampsora spp.) David L Joly1, Nicolas Feau1,3, Philippe Tanguay1, Richard C Hamelin1,2* Abstract Background: Obligate biotrophs such as rust fungi are believed to establish long-term relationships by modulating plant defenses through a plethora of effector proteins, whose most recognizable feature is the presence of a signal peptide for secretion. Since the phenotypes of these effectors extend to host cells, their genes are expected to be under accelerated evolution stimulated by host-pathogen coevolutionary arms races.