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Entrez Symbols Name Termid Termdesc 117553 Uba3,Ube1c
Entrez Symbols Name TermID TermDesc 117553 Uba3,Ube1c ubiquitin-like modifier activating enzyme 3 GO:0016881 acid-amino acid ligase activity 299002 G2e3,RGD1310263 G2/M-phase specific E3 ubiquitin ligase GO:0016881 acid-amino acid ligase activity 303614 RGD1310067,Smurf2 SMAD specific E3 ubiquitin protein ligase 2 GO:0016881 acid-amino acid ligase activity 308669 Herc2 hect domain and RLD 2 GO:0016881 acid-amino acid ligase activity 309331 Uhrf2 ubiquitin-like with PHD and ring finger domains 2 GO:0016881 acid-amino acid ligase activity 316395 Hecw2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 GO:0016881 acid-amino acid ligase activity 361866 Hace1 HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 GO:0016881 acid-amino acid ligase activity 117029 Ccr5,Ckr5,Cmkbr5 chemokine (C-C motif) receptor 5 GO:0003779 actin binding 117538 Waspip,Wip,Wipf1 WAS/WASL interacting protein family, member 1 GO:0003779 actin binding 117557 TM30nm,Tpm3,Tpm5 tropomyosin 3, gamma GO:0003779 actin binding 24779 MGC93554,Slc4a1 solute carrier family 4 (anion exchanger), member 1 GO:0003779 actin binding 24851 Alpha-tm,Tma2,Tmsa,Tpm1 tropomyosin 1, alpha GO:0003779 actin binding 25132 Myo5b,Myr6 myosin Vb GO:0003779 actin binding 25152 Map1a,Mtap1a microtubule-associated protein 1A GO:0003779 actin binding 25230 Add3 adducin 3 (gamma) GO:0003779 actin binding 25386 AQP-2,Aqp2,MGC156502,aquaporin-2aquaporin 2 (collecting duct) GO:0003779 actin binding 25484 MYR5,Myo1e,Myr3 myosin IE GO:0003779 actin binding 25576 14-3-3e1,MGC93547,Ywhah -
List of Horse Breeds 1 List of Horse Breeds
List of horse breeds 1 List of horse breeds This page is a list of horse and pony breeds, and also includes terms used to describe types of horse that are not breeds but are commonly mistaken for breeds. While there is no scientifically accepted definition of the term "breed,"[1] a breed is defined generally as having distinct true-breeding characteristics over a number of generations; its members may be called "purebred". In most cases, bloodlines of horse breeds are recorded with a breed registry. However, in horses, the concept is somewhat flexible, as open stud books are created for developing horse breeds that are not yet fully true-breeding. Registries also are considered the authority as to whether a given breed is listed as Light or saddle horse breeds a "horse" or a "pony". There are also a number of "color breed", sport horse, and gaited horse registries for horses with various phenotypes or other traits, which admit any animal fitting a given set of physical characteristics, even if there is little or no evidence of the trait being a true-breeding characteristic. Other recording entities or specialty organizations may recognize horses from multiple breeds, thus, for the purposes of this article, such animals are classified as a "type" rather than a "breed". The breeds and types listed here are those that already have a Wikipedia article. For a more extensive list, see the List of all horse breeds in DAD-IS. Heavy or draft horse breeds For additional information, see horse breed, horse breeding and the individual articles listed below. -
Tesi Finale Dottorato
INDICE GENERALE 1. INTRODUZIONE............................................................................................................................3 1.1. La tracciabilità dei prodotti di origine animale: alcuni elementi.........................................3 1.2. Elementi di genetica molecolare..........................................................................................4 1.2.1. I marcatori genetici.......................................................................................................4 1.2.2. Lo stato di avanzamento nello studio del genoma degli animali di interesse zootecnico...............................................................................................................................6 1.3. Tracciabilità dei prodotti di origine animale e genetica molecolare....................................8 1.4. I prodotti “monorazza”.......................................................................................................10 1.5. Genetica e biochimica del colore del mantello: alcuni elementi........................................16 1.6. Genetica molecolare e colore del mantello........................................................................19 1.6.1. Il gene MC1R nella specie bovina.............................................................................21 1.6.2. Il gene MC1R nella specie suina................................................................................26 1.6.3. Il gene KIT nella specie bovina..................................................................................26 -
Influence of the Casein Composite Genotype on Milk Quality And
animals Article Influence of the Casein Composite Genotype on Milk Quality and Coagulation Properties in the Endangered Agerolese Cattle Breed Sara Albarella 1,* , Maria Selvaggi 2, Emanuele D’Anza 1, Gianfranco Cosenza 3 , Simonetta Caira 4, Andrea Scaloni 4, Annunziata Fontana 5, Vincenzo Peretti 1 and Francesca Ciotola 1 1 Department of Veterinary Medicine and Animal Production, University of Naples Federico II, via Delpino 1, 80137 Naples, Italy; [email protected] (E.D.); [email protected] (V.P.); [email protected] (F.C.); 2 Department of Agricultural and Environmental Science, University of Bari Aldo Moro, 70126 Bari, Italy; [email protected] 3 Department of Agriculture, University of Napoli Federico II, 80055 Portici, Italy; [email protected] 4 Proteomics & Mass Spectrometry Laboratory, ISPAAM, National Research Council, 80147 Naples, Italy; [email protected] (S.C.); [email protected] (A.S.) 5 Laboratory of milk analyses (LSL), Italian Breeders Association (AIA), 00054 Maccarese, Italy; [email protected] * Correspondence: [email protected]; Tel.: +39-081-2536502; Fax: +39-081-292981 Received: 16 April 2020; Accepted: 18 May 2020; Published: 20 May 2020 Simple Summary: Characterization of variants in casein genes allows breeders and researchers to select the most suitable cows for milk production within the same breed. It has been observed that milk from different cattle breeds with the same casein composite genotype shows different chemical and coagulation properties. The aim of this work was to characterize CSN1S1, CSN2 and CSN3 gene variants in Agerolese cattle, an Italian autochthonous breed, milk of which is used to produce “Provolone del Monaco”, a PDO cheese with a relevant economic interest for the Lattari Mountains area and the Sorrento Peninsula (Naples, Italy). -
Meta-Analysis of Mitochondrial DNA Reveals Several Population
Table S1. Haplogroup distributions represented in Figure 1. N: number of sequences; J: banteng, Bali cattle (Bos javanicus ); G: yak (Bos grunniens ). Other haplogroup codes are as defined previously [1,2], but T combines T, T1’2’3’ and T5 [2] while the T1 count does not include T1a1c1 haplotypes. T1 corresponds to T1a defined by [2] (16050T, 16133C), but 16050C–16133C sequences in populations with a high T1 and a low T frequency were scored as T1 with a 16050C back mutation. Frequencies of I are only given if I1 and I2 have not been differentiated. Average haplogroup percentages were based on balanced representations of breeds. Country, Region Percentages per Haplogroup N Reference Breed(s) T T1 T1c1a1 T2 T3 T4 I1 I2 I J G Europe Russia 58 3.4 96.6 [3] Yaroslavl Istoben Kholmogory Pechora type Red Gorbatov Suksun Yurino Ukrain 18 16.7 72.2 11.1 [3] Ukrainian Whiteheaded Ukrainian Grey Estonia, Byelorussia 12 100 [3] Estonian native Byelorussia Red Finland 31 3.2 96.8 [3] Eastern Finncattle Northern Finncattle Western Finncattle Sweden 38 100.0 [3] Bohus Poll Fjall cattle Ringamala Cattle Swedish Mountain Cattle Swedish Red Polled Swedish Red-and-White Vane Cattle Norway 44 2.3 0.0 0.0 0.0 97.7 [1,4] Blacksided Trondheim Norwegian Telemark Westland Fjord Westland Red Polled Table S1. Cont. Country, Region Percentages per Haplogroup N Reference Breed(s) T T1 T1c1a1 T2 T3 T4 I1 I2 I J G Iceland 12 100.0 [1] Icelandic Denmark 32 100.0 [3] Danish Red (old type) Jutland breed Britain 108 4.2 1.2 94.6 [1,5,6] Angus Galloway Highland Kerry Hereford Jersey White Park Lowland Black-Pied 25 12.0 88.0 [1,4] Holstein-Friesian German Black-Pied C Europe 141 3.5 4.3 92.2 [1,4,7] Simmental Evolene Raetian Grey Swiss Brown Valdostana Pezzata Rossa Tarina Bruna Grey Alpine France 98 1.4 6.6 92.0 [1,4,8] Charolais Limousin Blonde d’Aquitaine Gascon 82.57 Northern Spain 25 4 13.4 [8,9] 1 Albera Alistana Asturia Montana Monchina Pirenaica Pallaresa Rubia Gallega Southern Spain 638 0.1 10.9 3.1 1.9 84.0 [5,8–11] Avileña Berrenda colorado Berrenda negro Cardena Andaluzia Table S1. -
The Enigmatic Origin of Bovine Mtdna Haplogroup R: Sporadic Interbreeding Or an Independent Event of Bos Primigenius Domestication in Italy?
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central The Enigmatic Origin of Bovine mtDNA Haplogroup R: Sporadic Interbreeding or an Independent Event of Bos primigenius Domestication in Italy? Silvia Bonfiglio1, Alessandro Achilli1,2, Anna Olivieri1, Riccardo Negrini3, Licia Colli3, Luigi Liotta4, Paolo Ajmone-Marsan3, Antonio Torroni1, Luca Ferretti1* 1 Dipartimento di Genetica e Microbiologia, Universita` di Pavia, Pavia, Italy, 2 Dipartimento di Biologia Cellulare e Ambientale, Universita` di Perugia, Perugia, Italy, 3 Istituto di Zootecnica, Universita` Cattolica del Sacro Cuore, Piacenza, Italy, 4 Dipartimento di Morfologia, Biochimica, Fisiologia e Produzioni Animali, Universita` di Messina, Messina, Italy Abstract Background: When domestic taurine cattle diffused from the Fertile Crescent, local wild aurochsen (Bos primigenius) were still numerous. Moreover, aurochsen and introduced cattle often coexisted for millennia, thus providing potential conditions not only for spontaneous interbreeding, but also for pastoralists to create secondary domestication centers involving local aurochs populations. Recent mitochondrial genomes analyses revealed that not all modern taurine mtDNAs belong to the shallow macro-haplogroup T of Near Eastern origin, as demonstrated by the detection of three branches (P, Q and R) radiating prior to the T node in the bovine phylogeny. These uncommon haplogroups represent excellent tools to evaluate if sporadic interbreeding or even additional events of cattle domestication occurred. Methodology: The survey of the mitochondrial DNA (mtDNA) control-region variation of 1,747 bovine samples (1,128 new and 619 from previous studies) belonging to 37 European breeds allowed the identification of 16 novel non-T mtDNAs, which after complete genome sequencing were confirmed as members of haplogroups Q and R. -
The Proteasomal Deubiquitinating Enzyme PSMD14 Regulates Macroautophagy by Controlling Golgi-To-ER Retrograde Transport
Supplementary Materials The proteasomal deubiquitinating enzyme PSMD14 regulates macroautophagy by controlling Golgi-to-ER retrograde transport Bustamante HA., et al. Figure S1. siRNA sequences directed against human PSMD14 used for Validation Stage. Figure S2. Primer pairs sequences used for RT-qPCR. Figure S3. The PSMD14 DUB inhibitor CZM increases the Golgi apparatus area. Immunofluorescence microscopy analysis of the Golgi area in parental H4 cells treated for 4 h either with the vehicle (DMSO; Control) or CZM. The Golgi marker GM130 was used to determine the region of interest in each condition. Statistical significance was determined by Student's t-test. Bars represent the mean ± SEM (n =43 cells). ***P <0.001. Figure S4. CZM causes the accumulation of KDELR1-GFP at the Golgi apparatus. HeLa cells expressing KDELR1-GFP were either left untreated or treated with CZM for 30, 60 or 90 min. Cells were fixed and representative confocal images were acquired. Figure S5. Effect of CZM on proteasome activity. Parental H4 cells were treated either with the vehicle (DMSO; Control), CZM or MG132, for 90 min. Protein extracts were used to measure in vitro the Chymotrypsin-like peptidase activity of the proteasome. The enzymatic activity was quantified according to the cleavage of the fluorogenic substrate Suc-LLVY-AMC to AMC, and normalized to that of control cells. The statistical significance was determined by One-Way ANOVA, followed by Tukey’s test. Bars represent the mean ± SD of biological replicates (n=3). **P <0.01; n.s., not significant. Figure S6. Effect of CZM and MG132 on basal macroautophagy. (A) Immunofluorescence microscopy analysis of the subcellular localization of LC3 in parental H4 cells treated with either with the vehicle (DMSO; Control), CZM for 4 h or MG132 for 6 h. -
35Th International Society for Animal Genetics Conference 7
35th INTERNATIONAL SOCIETY FOR ANIMAL GENETICS CONFERENCE 7. 23.16 – 7.27. 2016 Salt Lake City, Utah ABSTRACT BOOK https://www.asas.org/meetings/isag2016 INVITED SPEAKERS S0100 – S0124 https://www.asas.org/meetings/isag2016 epigenetic modifications, such as DNA methylation, and measuring different proteins and cellular metab- INVITED SPEAKERS: FUNCTIONAL olites. These advancements provide unprecedented ANNOTATION OF ANIMAL opportunities to uncover the genetic architecture GENOMES (FAANG) ASAS-ISAG underlying phenotypic variation. In this context, the JOINT SYMPOSIUM main challenge is to decipher the flow of biological information that lies between the genotypes and phe- notypes under study. In other words, the new challenge S0100 Important lessons from complex genomes. is to integrate multiple sources of molecular infor- T. R. Gingeras* (Cold Spring Harbor Laboratory, mation (i.e., multiple layers of omics data to reveal Functional Genomics, Cold Spring Harbor, NY) the causal biological networks that underlie complex traits). It is important to note that knowledge regarding The ~3 billion base pairs of the human DNA rep- causal relationships among genes and phenotypes can resent a storage devise encoding information for be used to predict the behavior of complex systems, as hundreds of thousands of processes that can go on well as optimize management practices and selection within and outside a human cell. This information is strategies. Here, we describe a multi-step procedure revealed in the RNAs that are composed of 12 billion for inferring causal gene-phenotype networks underly- nucleotides, considering the strandedness and allelic ing complex phenotypes integrating multi-omics data. content of each of the diploid copies of the genome. -
The Myostatin Gene: an Overview of Mechanisms of Action and Its Relevance to Livestock Animals
The Myostatin gene: an overview of mechanisms of action and its relevance to livestock animals Article Accepted Version Aiello, D., Patel, K. and Lasagna, E. (2018) The Myostatin gene: an overview of mechanisms of action and its relevance to livestock animals. Animal Genetics, 49 (6). pp. 505-519. ISSN 1365-2052 doi: https://doi.org/10.1111/age.12696 Available at http://centaur.reading.ac.uk/77388/ It is advisable to refer to the publisher’s version if you intend to cite from the work. See Guidance on citing . To link to this article DOI: http://dx.doi.org/10.1111/age.12696 Publisher: Wiley All outputs in CentAUR are protected by Intellectual Property Rights law, including copyright law. Copyright and IPR is retained by the creators or other copyright holders. Terms and conditions for use of this material are defined in the End User Agreement . www.reading.ac.uk/centaur CentAUR Central Archive at the University of Reading Reading’s research outputs online 1 Review: The Myostatin gene: an overview of mechanisms of action and its 2 relevance to livestock animals 3 D. Aiello 1, K. Patel 2 and E. Lasagna 1 4 5 1 Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Università degli Studi di 6 Perugia, Borgo XX Giugno 74, 06121, Perugia, Italy 7 2 School of Biological Sciences, University of Reading, Berkshire, RG6 6UB, United 8 Kingdom 9 10 Corresponding author: Emiliano Lasagna. Fax: +39 075 5857122. Tel: +39 075 11 5857102. E-mail address: [email protected] 12 13 1 14 15 Summary 16 Myostatin, also known as Growth Differentiation Factor 8, a member of the 17 Transforming Growth Factor-beta (TGF-β) super-family is a negative regulator of 18 muscle development. -
Play Service 2010 / 2011
Play Service 2010 / 2011 Internationales Theaterinstitut Zentrum Bundesrepublik Deutschland _ _ Inhalt _ _ content Vorbemerkungen..................................................................................................................3 editorial.................................................................................................................................3 Schauspiel Uraufführungen..................................................................................................5 drama world premieres.........................................................................................................5 Schauspiel Erstaufführungen.............................................................................................52 drama debut performances................................................................................................52 Kinder- und Jugendtheater - Uraufführungen....................................................................66 children and youth theatre - world premieres.....................................................................66 Kinder- und Jugendtheater - Erstaufführungen..................................................................84 children and youth theatre - debut performances..............................................................84 Verlage...............................................................................................................................87 publishing houses...............................................................................................................87 -
Short Communication Whole Genome Sequencing Reveals a Large Deletion
Short Communication Whole genome sequencing reveals a large deletion in the MITF gene in horses with white spotted coat colour and increased risk of deafness Jan Henkel1,2, Christa Lafayette3, Samantha A. Brooks4, Katie Martin3, Laura Patterson-Rosa4, Deborah Cook3, Vidhya Jagannathan1,2, Tosso Leeb1,2 1 Institute of Genetics, Vetsuisse Faculty, University of Bern, 3001 Bern, Switzerland 2 DermFocus, University of Bern, 3001 Bern, Switzerland 3 Etalon Inc., Menlo Park, CA 94025, USA 4 Department of Animal Sciences, University of Florida, Gainesville, FL 32611-0910, USA Running title: Equine MITF deletion Address for correspondence Tosso Leeb Institute of Genetics Vetsuisse Faculty University of Bern Bremgartenstrasse 109a 3001 Bern | downloaded: 24.9.2021 Switzerland Phone: +41-31-6312326 Fax: +41-31-6312640 E-mail: [email protected] https://doi.org/10.7892/boris.129241 source: 1 Summary White spotting phenotypes in horses are highly valued in some breeds. They are quite variable and may range from the common white markings up to completely white horses. EDNRB, KIT, MITF, PAX3, and TRPM1 represent known candidate genes for white spotting phenotypes in horses. For the present study, we investigated an American Paint Horse family segregating a phenotype involving white spotting and blue eyes. Six of eight horses with the white-spotting phenotype were deaf. We obtained whole genome sequence data from an affected horse and specifically searched for structural variants in the known candidate genes. This analysis revealed a heterozygous ~63 kb deletion spanning exons 6-9 of the MITF gene (chr16:21,503,211_21,566,617). We confirmed the breakpoints of the deletion by PCR and Sanger sequencing. -
OXALOACETATO Patent Application Title Inventors
Method for Extending Lifespan Delaying the Onset of Age-Related Disease: OXALOACETATO Patent application title Inventors: Alan B. Cash (San Diego, CA, US) IPC8 Class: AA61K912FI USPC Class: 424 45 Class name: Drug, bio-affecting and body treating compositions effervescent or pressurized fluid containing organic pressurized fluid Publication date: 2008-11-13 Patent application number: 20080279786 Abstract: A method and composition for extending the lifespan of an individual and delaying the onset of age-related disease is provided. The method includes the administration of an effective dose of oxaloacetate, wherein the oxaloacetate acts to mimic the cellular conditions obtained under caloric restriction to provide similar benefits. The invention further includes methods and compositions for reducing the incidence or treatment of cancer. Compositions and methods for reducing body fat by administering an effective amount of oxaloacetate are likewise provided. Compositions for DNA repair in UV damaged cells is provided are also provided. Similarly, a method for treating a hang-over comprising administering an effective amount of oxaloacetate is disclosed. Claims: 1. Use of an effective lifespan-extending amount of a composition selected from the group consisting of oxaloacetate, oxaloacetic acid, an oxaloacetate salt, alpha-ketoglutarate and aspartate for the manufacture of a medicament for extending the lifespan of an organism. 2. The use of claim 1, wherein said composition is formulated for oral administration. 3. The use of claim 1, wherein said composition is formulated with a buffer. 4. The use of claim 1, wherein said organism is a mammal. 5. The use of claim 4, wherein said mammal is a human.