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Biologically Active Compounds from Pacific Tunicates;
BIOLOGICALLY ACTIVE COMPOUNDS FROM PACIFIC TUNICATES by David Francis Sesin A dissertation submitted to the faculty of The University of Utah in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Medicinal Chemistry The University of Utah December 1986 View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by The University of Utah: J. Willard Marriott Digital Library THE UNIVERSITY OF UTAH GRADUATE SCHOOL SUPERVISORY COMMITTEE APPROVAL of a dissertation submitted by DAVID FRANCIS SESIN This dissertation has been read by each member of the following supervisory committee and by majority vote has been found to be satisfactory .. September 16. 1986 Chainnan:chris M. Ire'iand. Ph.D. September 16. 1986 Arthur D. Broom. Ph.D. September 16. 1986 ark E. Sanders. Ph.D. September 16, 1986 Martin P. Schweizer.�.D. September 16. 1986 David M. Grant. Ph.D. THE VI'IiIVERSITY OF UTAH GRADUATE SCHOOL FINAL READING APPRC)VAL To the Graduate Council of The University of Utah: I have read the dissertation of David Francis Sesin 10 Its final form and have found that (I) its format. citations. and bibliographic style are consistent and acceptable; (2) its illustrative materials including figures. tables. and charts are in place: and (3) the final manuscript is satisfactory to the Supervis ory Committee and is ready for submission to the Graduate School. Date Chris M. Ireland. Ph.D. Chairp(,rson. Supt'rvisory Commill('t, Approved for the Major Departmenl Arthur D. Broom. Ph.D. Chairman / Dean Approved ror lhe GradU,Ill' Coullcil Dean of The (;raduate Sdl()ol Copyright@ David Francis Sesin 1986 All Rights Reserved ABSTRACT Tunicates have proven to be a rich source of structurally-diverse metabolites covering a broad spectrum of biological activities. -
Sea Squirt Symbionts! Or What I Did on My Summer Vacation… Leah Blasiak 2011 Microbial Diversity Course
Sea Squirt Symbionts! Or what I did on my summer vacation… Leah Blasiak 2011 Microbial Diversity Course Abstract Microbial symbionts of tunicates (sea squirts) have been recognized for their capacity to produce novel bioactive compounds. However, little is known about most tunicate-associated microbial communities, even in the embryology model organism Ciona intestinalis. In this project I explored 3 local tunicate species (Ciona intestinalis, Molgula manhattensis, and Didemnum vexillum) to identify potential symbiotic bacteria. Tunicate-specific bacterial communities were observed for all three species and their tissue specific location was determined by CARD-FISH. Introduction Tunicates and other marine invertebrates are prolific sources of novel natural products for drug discovery (reviewed in Blunt, 2010). Many of these compounds are biosynthesized by a microbial symbiont of the animal, rather than produced by the animal itself (Schmidt, 2010). For example, the anti-cancer drug patellamide, originally isolated from the colonial ascidian Lissoclinum patella, is now known to be produced by an obligate cyanobacterial symbiont, Prochloron didemni (Schmidt, 2005). Research on such microbial symbionts has focused on their potential for overcoming the “supply problem.” Chemical synthesis of natural products is often challenging and expensive, and isolation of sufficient quantities of drug for clinical trials from wild sources may be impossible or environmentally costly. Culture of the microbial symbiont or heterologous expression of the biosynthetic genes offers a relatively economical solution. Although the microbial origin of many tunicate compounds is now well established, relatively little is known about the extent of such symbiotic associations in tunicates and their biological function. Tunicates (or sea squirts) present an interesting system in which to study bacterial/eukaryotic symbiosis as they are deep-branching members of the Phylum Chordata (Passamaneck, 2005 and Buchsbaum, 1948). -
A Genomic View of Trophic and Metabolic Diversity in Clade-Specific Lamellodysidea Sponge Microbiomes
UC San Diego UC San Diego Previously Published Works Title A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes. Permalink https://escholarship.org/uc/item/6z2365ft Journal Microbiome, 8(1) ISSN 2049-2618 Authors Podell, Sheila Blanton, Jessica M Oliver, Aaron et al. Publication Date 2020-06-23 DOI 10.1186/s40168-020-00877-y Peer reviewed eScholarship.org Powered by the California Digital Library University of California Podell et al. Microbiome (2020) 8:97 https://doi.org/10.1186/s40168-020-00877-y RESEARCH Open Access A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes Sheila Podell1 , Jessica M. Blanton1, Aaron Oliver1, Michelle A. Schorn2, Vinayak Agarwal3, Jason S. Biggs4, Bradley S. Moore5,6,7 and Eric E. Allen1,5,7,8* Abstract Background: Marine sponges and their microbiomes contribute significantly to carbon and nutrient cycling in global reefs, processing and remineralizing dissolved and particulate organic matter. Lamellodysidea herbacea sponges obtain additional energy from abundant photosynthetic Hormoscilla cyanobacterial symbionts, which also produce polybrominated diphenyl ethers (PBDEs) chemically similar to anthropogenic pollutants of environmental concern. Potential contributions of non-Hormoscilla bacteria to Lamellodysidea microbiome metabolism and the synthesis and degradation of additional secondary metabolites are currently unknown. Results: This study has determined relative abundance, taxonomic novelty, metabolic -
Supplementary Information
Supplementary Information A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes Sheila Podell, Jessica M. Blanton, Aaron Oliver, Michelle A. Schorn, Vinayak Agarwal, Jason S. Biggs, Bradley S. Moore, Eric E. Allen Contents Supplementary Figures S1-S13 ....................................................................................................... 2 Supplementary Tables S1-S8 ........................................................................................................ 16 References ..................................................................................................................................... 26 Supplementary Figure 1. Cyanobacteria MAGs classified taxonomically. A) PhyloPhlAn multi-locus concatenated tree [1], with Crinalium epipsammum as an outgroup. B) 16S rRNA gene/and average amino acid identity matrix with closest database relatives. Guidelines for assigning species, genus, family, and order-level taxonomic granularity were based on [2, 3] for AAI and [4] for 16S rRNA gene percent nucleotide identity. A B Pleurocapsa_PCC_7327 1 Stanieria_cyanosphaera 1 SP5CPC1 1 0.993 Prochloron_didemni_P3 1 Prochloron_didemni_P4 Gloeobacter_violaceus Stanieria_cyanosphaera SP5CPC Prochloron_didemni_P3 Prochloron_didemni_P4 Gloeobacter_violaceus Crinalium_epipsammum Desertifilum_IPPASB1220 GM7CHS1 GM202CHS1 GM102CHS1 SP12CHS1 SP5CHS1 Nostoc_punctiforme 92/65 89/61 89/61 89/61 88/51 90/63 91/62 90/60 90/60 -/60 89/60 90/60 88/63 Pleurocapsa_PCC_7327 Crinalium_epipsammum -
A Novel Species of the Marine Cyanobacterium Acaryochloris With
www.nature.com/scientificreports OPEN A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and Received: 12 February 2018 Accepted: 1 June 2018 lifestyle Published: xx xx xxxx Frédéric Partensky 1, Christophe Six1, Morgane Ratin1, Laurence Garczarek1, Daniel Vaulot1, Ian Probert2, Alexandra Calteau 3, Priscillia Gourvil2, Dominique Marie1, Théophile Grébert1, Christiane Bouchier 4, Sophie Le Panse2, Martin Gachenot2, Francisco Rodríguez5 & José L. Garrido6 All characterized members of the ubiquitous genus Acaryochloris share the unique property of containing large amounts of chlorophyll (Chl) d, a pigment exhibiting a red absorption maximum strongly shifted towards infrared compared to Chl a. Chl d is the major pigment in these organisms and is notably bound to antenna proteins structurally similar to those of Prochloron, Prochlorothrix and Prochlorococcus, the only three cyanobacteria known so far to contain mono- or divinyl-Chl a and b as major pigments and to lack phycobilisomes. Here, we describe RCC1774, a strain isolated from the foreshore near Roscof (France). It is phylogenetically related to members of the Acaryochloris genus but completely lacks Chl d. Instead, it possesses monovinyl-Chl a and b at a b/a molar ratio of 0.16, similar to that in Prochloron and Prochlorothrix. It difers from the latter by the presence of phycocyanin and a vestigial allophycocyanin energetically coupled to photosystems. Genome sequencing confrmed the presence of phycobiliprotein and Chl b synthesis genes. Based on its phylogeny, ultrastructural characteristics and unique pigment suite, we describe RCC1774 as a novel species that we name Acaryochloris thomasi. Its very unusual pigment content compared to other Acaryochloris spp. -
Origins and Bioactivities of Natural Compounds Derived from Marine Ascidians and Their Symbionts
marine drugs Review Origins and Bioactivities of Natural Compounds Derived from Marine Ascidians and Their Symbionts Xiaoju Dou 1,4 and Bo Dong 1,2,3,* 1 Laboratory of Morphogenesis & Evolution, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China; [email protected] 2 Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China 3 Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao 266003, China 4 College of Agricultural Science and Technology, Tibet Vocational Technical College, Lhasa 850030, China * Correspondence: [email protected]; Tel.: +86-0532-82032732 Received: 29 October 2019; Accepted: 25 November 2019; Published: 28 November 2019 Abstract: Marine ascidians are becoming important drug sources that provide abundant secondary metabolites with novel structures and high bioactivities. As one of the most chemically prolific marine animals, more than 1200 inspirational natural products, such as alkaloids, peptides, and polyketides, with intricate and novel chemical structures have been identified from ascidians. Some of them have been successfully developed as lead compounds or highly efficient drugs. Although numerous compounds that exist in ascidians have been structurally and functionally identified, their origins are not clear. Interestingly, growing evidence has shown that these natural products not only come from ascidians, but they also originate from symbiotic microbes. This review classifies the identified natural products from ascidians and the associated symbionts. Then, we discuss the diversity of ascidian symbiotic microbe communities, which synthesize diverse natural products that are beneficial for the hosts. Identification of the complex interactions between the symbiont and the host is a useful approach to discovering ways that direct the biosynthesis of novel bioactive compounds with pharmaceutical potentials. -
Prochlorophyta: a Sub-Class of Chlorophyta
PROCHLOROPHYTA: A SUB-CLASS OF CHLOROPHYTA Prochlorophyta are a photosynthetic prokaryote members of the phytoplankton group Picoplankton. These oligotrophic organisms are abundant in nutrient-poor tropical waters and use a unique photosynthetic pigment, divinyl-chlorophyll, to absorb light and acquire energy. These organisms lack red and blue Phycobilin pigments and have staked thylakoids, both of which make them different from Cyanophyta. Prochlorophyta were initially discovered in 1975 near the Great Barrier Reef and off the coast of Mexico. The following year, Ralph A. Lewin, of the Scripps Institution of Oceanography, assigned them as a new algal sub-class. Prochlorophytes are very small microbes generally between 0.2 and 2 µm (Photosynthetic picoplankton). They morphologically resemble Cyanobacteria, Members of Prochlorophyta have been found as coccoid (spherical) shapes, like Prochlorococcus, and as filaments, like Prochlorothrix. In addition to Prochlorophyta, other phytoplankton that lack Phycobilin pigments were later found in freshwater lakes in the Netherlands, by Tineke Burger-Wiersma. These organisms were termed Prochlorothrix. Prochloron (a marine symbiont) and Prochlorothrix (from freshwater plankton) contain chlorophylls a and b; Prochlorococcus (common in marine picoplankton) contains divinyl-chlorophylls a and b. In 1986, Prochlorococcus was discovered by Sallie W. Chisholm and his colleagues. These organisms might be responsible for a significant portion of the global primary production. Like cyanophytes they are all clearly photosynthetic prokaryotes, but since they contain no blue or red bilin pigment they were assigned to a new algal sub- class, the Prochlorophyta. However, since their possible phylogenetic relationships to ancestral green-plant chloroplasts have not received support from molecular biology, it now seems expedient to consider them as aberrant cyanophytes. -
Patellamide a and C Biosynthesis by a Microcin-Like Pathway in Prochloron Didemni, the Cyanobacterial Symbiont of Lissoclinum Patella
Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella Eric W. Schmidt*†, James T. Nelson*, David A. Rasko‡, Sebastian Sudek§, Jonathan A. Eisen‡, Margo G. Haygood§, and Jacques Ravel‡ *Department of Medicinal Chemistry, University of Utah, Salt Lake City, UT 84112; ‡The Institute for Genomic Research, Rockville, MD 20850; and §Scripps Institution of Oceanography, University of California at San Diego, La Jolla, CA 92093 Edited by Robert Haselkorn, University of Chicago, Chicago, IL, and approved April 7, 2005 (received for review February 18, 2005) Prochloron spp. are obligate cyanobacterial symbionts of many a project to sequence the genome of Prochloron didemni, isolated didemnid family ascidians. It has been proposed that the cyclic from the ascidian Lissoclinum patella. peptides of the patellamide class found in didemnid extracts are The patellamides and trunkamide (another didemnid product) synthesized by Prochloron spp., but studies in which host and are peptides that exemplify both the unique structural features and symbiont cells are separated and chemically analyzed to identify potent bioactivities of didemnid ascidian natural products (Fig. 1). the biosynthetic source have yielded inconclusive results. As part Both groups have clinical potential, because patellamides are of the Prochloron didemni sequencing project, we identified pa- typically moderately cytotoxic, and patellamides B, C, and D tellamide biosynthetic genes and confirmed their function by reportedly reverse multidrug resistance (15, 16), whereas trunka- heterologous expression of the whole pathway in Escherichia coli. mide was initially isolated because of specific and unusual activity The primary sequence of patellamides A and C is encoded on a against the multidrug-resistant UO-31 renal cell line (17). -
"Phycology". In: Encyclopedia of Life Science
Phycology Introductory article Ralph A Lewin, University of California, La Jolla, California, USA Article Contents Michael A Borowitzka, Murdoch University, Perth, Australia . General Features . Uses The study of algae is generally called ‘phycology’, from the Greek word phykos meaning . Noxious Algae ‘seaweed’. Just what algae are is difficult to define, because they belong to many different . Classification and unrelated classes including both prokaryotic and eukaryotic representatives. Broadly . Evolution speaking, the algae comprise all, mainly aquatic, plants that can use light energy to fix carbon from atmospheric CO2 and evolve oxygen, but which are not specialized land doi: 10.1038/npg.els.0004234 plants like mosses, ferns, coniferous trees and flowering plants. This is a negative definition, but it serves its purpose. General Features Algae range in size from microscopic unicells less than 1 mm several species are also of economic importance. Some in diameter to kelps as long as 60 m. They can be found in kinds are consumed as food by humans. These include almost all aqueous or moist habitats; in marine and fresh- the red alga Porphyra (also known as nori or laver), an water environments they are the main photosynthetic or- important ingredient of Japanese foods such as sushi. ganisms. They are also common in soils, salt lakes and hot Other algae commonly eaten in the Orient are the brown springs, and some can grow in snow and on rocks and the algae Laminaria and Undaria and the green algae Caulerpa bark of trees. Most algae normally require light, but some and Monostroma. The new science of molecular biology species can also grow in the dark if a suitable organic carbon has depended largely on the use of algal polysaccharides, source is available for nutrition. -
Metabarcoding Analysis on European Coastal Samples Reveals New
www.nature.com/scientificreports OPEN Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity Received: 8 November 2017 David López-Escardó1, Jordi Paps2, Colomban de Vargas3,4, Ramon Massana5, Accepted: 5 June 2018 Iñaki Ruiz-Trillo 1,6,7 & Javier del Campo1,5 Published: xx xx xxxx Although animals are among the best studied organisms, we still lack a full description of their diversity, especially for microscopic taxa. This is partly due to the time-consuming and costly nature of surveying animal diversity through morphological and molecular studies of individual taxa. A powerful alternative is the use of high-throughput environmental sequencing, providing molecular data from all organisms sampled. We here address the unknown diversity of animal phyla in marine environments using an extensive dataset designed to assess eukaryotic ribosomal diversity among European coastal locations. A multi-phylum assessment of marine animal diversity that includes water column and sediments, oxic and anoxic environments, and both DNA and RNA templates, revealed a high percentage of novel 18S rRNA sequences in most phyla, suggesting that marine environments have not yet been fully sampled at a molecular level. This novelty is especially high among Platyhelminthes, Acoelomorpha, and Nematoda, which are well studied from a morphological perspective and abundant in benthic environments. We also identifed, based on molecular data, a potentially novel group of widespread tunicates. Moreover, we recovered a high number of reads for Ctenophora and Cnidaria in the smaller fractions suggesting their gametes might play a greater ecological role than previously suspected. Te animal kingdom is one of the best-studied branches of the tree of life1, with more than 1.5 million species described in around 35 diferent phyla2. -
Species Specificity of Symbiosis and Secondary Metabolism in Ascidians
The ISME Journal (2015) 9, 615–628 & 2015 International Society for Microbial Ecology All rights reserved 1751-7362/15 www.nature.com/ismej ORIGINAL ARTICLE Species specificity of symbiosis and secondary metabolism in ascidians Ma Diarey B Tianero1, Jason C Kwan1,2, Thomas P Wyche2, Angela P Presson3, Michael Koch4, Louis R Barrows4, Tim S Bugni2 and Eric W Schmidt1 1Department of Medicinal Chemistry, L.S. Skaggs Pharmacy Institute, University of Utah, Salt Lake City, UT, USA; 2School of Pharmacy, University of Wisconsin-Madison, Madison, WI, USA; 3Study Design and Biostatistics Center, Division of Epidemiology, University of Utah, Salt Lake City, UT, USA and 4Department of Pharmacology and Toxicology, L.S. Skaggs Pharmacy Institute, University of Utah, Salt Lake City, UT, USA Ascidians contain abundant, diverse secondary metabolites, which are thought to serve a defensive role and which have been applied to drug discovery. It is known that bacteria in symbiosis with ascidians produce several of these metabolites, but very little is known about factors governing these ‘chemical symbioses’. To examine this phenomenon across a wide geographical and species scale, we performed bacterial and chemical analyses of 32 different ascidians, mostly from the didemnid family from Florida, Southern California and a broad expanse of the tropical Pacific Ocean. Bacterial diversity analysis showed that ascidian microbiomes are highly diverse, and this diversity does not correlate with geographical location or latitude. Within a subset of species, ascidian microbiomes are also stable over time (R ¼À0.037, P-value ¼ 0.499). Ascidian microbiomes and metabolomes contain species-specific and location-specific components. Location-specific bacteria are found in low abundance in the ascidians and mostly represent strains that are widespread. -
And Transcriptomic-Profiling of the Host-Associated Cyanobacteria Prochloron and Acaryochloris Marina
The ISME Journal (2018) 12, 556–567 © 2018 International Society for Microbial Ecology All rights reserved 1751-7362/18 www.nature.com/ismej ORIGINAL ARTICLE In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina Lars Behrendt1,2,3, Jean-Baptiste Raina4, Adrian Lutz5, Witold Kot6, Mads Albertsen7, Per Halkjær-Nielsen7, Søren J Sørensen3, Anthony WD Larkum4 and Michael Kühl2,4 1Department of Civil, Environmental and Geomatic Engineering, Swiss Federal Institute of Technology, Zürich, Switzerland; 2Marine Biological Section, Department of Biology, University of Copenhagen, Helsingør, Denmark; 3Microbiology Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark; 4Plant Functional Biology and Climate Change Cluster (C3), University of Technology, Sydney, New South Wales, Australia; 5Metabolomics Australia, School of BioSciences, University of Melbourne, Parkville, Victoria, Australia; 6Department of Environmental Science—Enviromental Microbiology and Biotechnology, Aarhus University, Roskilde, Denmark and 7Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark The tropical ascidian Lissoclinum patella hosts two enigmatic cyanobacteria: (1) the photoendo- symbiont Prochloron spp., a producer of valuable bioactive compounds and (2) the chlorophyll-d containing Acaryochloris spp., residing in the near-infrared enriched underside of the animal. Despite numerous efforts, Prochloron remains uncultivable,