Sequence List Acetylome-Acetyltransferase JPT

Acetylome - Acetyltransferase Microarray page 1 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1 AYGGLL-K(Ac)-DFTATD AC control peptide 3-ketoacyl-CoA thiolase, mitochondrial 2 SEDAVK-K(Ac)-HNFTPL AC control peptide 3-ketoacyl-CoA thiolase, mitochondrial 3 FVSFIS-K(Ac)-DSIQKS AC control peptide Enoyl-CoA delta isomerase 1, mitochondrial Q96DC0_HUMAN_00224;H3BP91_HUMAN_00275;ECI1_HUMAN_00266 4 EIFQHS-K(Ac)-YKVDFI AC control peptide 39S ribosomal protein L39, mitochondrial C9JG87_HUMAN_00224;RM39_HUMAN_00234 5 SMDALD-K(Ac)-VVQERE AC control peptide 39S ribosomal protein L47, mitochondrial RM47_HUMAN_00124;RM47_HUMAN_00034 6 NIGLGF-K(Ac)-TPKEAI AC control peptide 40S ribosomal protein S11 B7Z712_HUMAN_00082;C9JCQ4_HUMAN_00082;C9JL25_HUMAN_00124;E7ESH4_HUMAN_0008 7 DGVTVA-K(Ac)-SIDLKD AC control peptide 60 kDa heat shock protein, mitochondrial 2;E7EXB4_HUMAN_00082 8 EIIEGM-K(Ac)-FDRGYI AC control peptide 60 kDa heat shock protein, mitochondrial E7ESH4_HUMAN_00216;F5GWR2_HUMAN_00074 9 LNERLA-K(Ac)-LSDGVA AC control peptide 60 kDa heat shock protein, mitochondrial 10 YVLLSE-K(Ac)-KISSIQ AC control peptide 60 kDa heat shock protein, mitochondrial 11 VVTEIP-K(Ac)-EEKDPG AC control peptide 60 kDa heat shock protein, mitochondrial Q3B7A4_HUMAN_00077;F8VPE8_HUMAN_00063;F8VQY6_HUMAN_00077;F8VRK7_HUMAN_000 77;F8VS58_HUMAN_00077;F8VU65_HUMAN_00077;F8VW21_HUMAN_00057;F8VWS0_HUMAN_ 12 NNPALE-K(Ac)-LLPHIR AC control peptide 60S acidic ribosomal protein P0 00077;F8VWV4_HUMAN_00063;F8VZS0_HUMAN_00077;G3V210_HUMAN_00077 13 DKGALA-K(Ac)-LVEAIR AC control peptide 60S ribosomal protein L7a 14 IVKMLE-K(Ac)-YLKGED AC control peptide A-kinase anchor protein 8 15 NIEAMS-K(Ac)-LKPYFL AC control peptide Acetyl-CoA acetyltransferase, cytosolic 16 LEDLIV-K(Ac)-DGLTDV AC control peptide Acetyl-CoA acetyltransferase, mitochondrial 17 KRVDFS-K(Ac)-VPKLKT AC control peptide Acetyl-CoA acetyltransferase, mitochondrial F8W6G0_HUMAN_00328;ACACA_HUMAN_01522;ACACA_HUMAN_01502;ACACA_HUMAN_0161 18 NTPYVT-K(Ac)-DLLQSK AC control peptide Acetyl-CoA carboxylase 1 7 C9JZR4_HUMAN_00151;E9PB03_HUMAN_00179;F5GYF6_HUMAN_00150;H0Y6A0_HUMAN_000 19 KPNQAK-K(Ac)-GLGAKK AC control peptide ADP-ribosylation factor GTPase-activating protein 3 70 A6NCQ0_HUMAN_00042;A6NHE8_HUMAN_00042;A6NJU6_HUMAN_00042;C9JYY9_HUMAN_00 20 YMDPTG-K(Ac)-TRTWES AC control peptide ADP-sugar pyrophosphatase 042 21 GAKAFF-K(Ac)-GAWSNV AC control peptide ADP/ATP translocase 1 22 LGDCLV-K(Ac)-IYKSDG AC control peptide ADP/ATP translocase 2 23 GGKAFF-K(Ac)-GAWSNV AC control peptide ADP/ATP translocase 2 24 FLGGVD-K(Ac)-HTQFWR AC control peptide ADP/ATP translocase 3 25 VDSLYN-K(Ac)-AKKLTZ AC control peptide 26S proteasome non-ATPase regulatory subunit 11 26 TFEEIA-K(Ac)-SAKITV AC control peptide 26S proteasome non-ATPase regulatory subunit 13 B4DJ66_HUMAN_00233;PSD13_HUMAN_00300 27 KMHLAG-K(Ac)-TEQAKA AC control peptide 28 kDa heat- and acid-stable phosphoprotein 28 DIDKRG-K(Ac)-YDLLRS AC control peptide 28S ribosomal protein S22, mitochondrial G5E9V5_HUMAN_00257;G5E9W7_HUMAN_00217;H7C5L9_HUMAN_00087 29 QIKVQE-K(Ac)-YVWNKR AC control peptide 28S ribosomal protein S29, mitochondrial E7EM60_HUMAN_00173;RT29_HUMAN_00166 30 QSTLDA-K(Ac)-ATKAKS AC control peptide 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase 31 QRTKKN-K(Ac)-EEAAEY AC control peptide 40S ribosomal protein S6 32 IYIINL-K(Ac)-RTWEKL AC control peptide 40S ribosomal protein SA A6NE09_HUMAN_00052;C9J9K3_HUMAN_00052;C9JQR9_HUMAN_00052 33 SAVMDT-K(Ac)-KKKDVS AC control peptide 5-AMP-activated protein kinase subunit gamma-2 34 GNLNTY-K(Ac)-RLAIKL AC control peptide 6-phosphofructokinase type C Q5VSR7_HUMAN_00387;H0Y3P8_HUMAN_00384;B1APP6_HUMAN_00179 35 FNRTVS-K(Ac)-VDDFLA AC control peptide 6-phosphogluconate dehydrogenase, decarboxylating B4DQJ8_HUMAN_00025;F5H7U0_HUMAN_00038 B4DQJ8_HUMAN_00296;B4DV68_HUMAN_00125;F5H0L3_HUMAN_00255;F5H7U0_HUMAN_002 36 KLKGPQ-K(Ac)-FQFDGD AC control peptide 6-phosphogluconate dehydrogenase, decarboxylating 87 37 SGRLWS-K(Ac)-AIFAGY AC control peptide 60S ribosomal protein L35a C9K025_HUMAN_00008;F8WB72_HUMAN_00008;F8WBS5_HUMAN_00008 38 RKIEEI-K(Ac)-DFLLTA AC control peptide 60S ribosomal protein L38 B4DP82_HUMAN_00106;E7EWF1_HUMAN_00106;H3BM89_HUMAN_00012;H3BTP7_HUMAN_00 39 RMFAPT-K(Ac)-TWRRWH AC control peptide 60S ribosomal protein L4 106;H3BU31_HUMAN_00106 40 ZZMGFV-K(Ac)-VVKNKA AC control peptide 60S ribosomal protein L5 41 FDTEKE-K(Ac)-YEITEQ AC control peptide 60S ribosomal protein L6 42 FNGTFV-K(Ac)-LNKASI AC control peptide 60S ribosomal protein L7 A8MUD9_HUMAN_00084;C9JIJ5_HUMAN_00084 Acetylome - Acetyltransferase Microarray page 2 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 43 NKVEEL-K(Ac)-KKYGIZ AC control peptide Acyl-CoA-binding protein ACBP_HUMAN_00099;ACBP_HUMAN_00083;ACBP_HUMAN_00124;ACBP_HUMAN_00143 44 PQVSES-K(Ac)-LZZZZZ AC control peptide Acyl-coenzyme A thioesterase 8 A6NDT2_HUMAN_00253;H7C5A7_HUMAN_00208 45 VPLVFP-K(Ac)-TYGESM AC control peptide Acyl-coenzyme A thioesterase 9, mitochondrial ACOT9_HUMAN_00374;ACOT9_HUMAN_00347;ACOT9_HUMAN_00416 46 EAVDIL-K(Ac)-TERLGH AC control peptide Adenosine deaminase E7EWH4_HUMAN_00014;F8VY04_HUMAN_00014;F8VZG5_HUMAN_00014;F8W1A4_HUMAN_00 014;G3V213_HUMAN_00014;F8VPP1_HUMAN_00014;KAD2_HUMAN_00014;KAD2_HUMAN_0001 47 AEPEYP-K(Ac)-GIRAVL AC control peptide Adenylate kinase 2, mitochondrial 4;KAD2_HUMAN_00014 Q5T0R1_HUMAN_00081;Q5T0R2_HUMAN_00081;Q5T0R3_HUMAN_00081;Q5T0R4_HUMAN_000 81;Q5T0R5_HUMAN_00081;Q5T0R6_HUMAN_00081;Q5T0R7_HUMAN_00081;Q5T0R9_HUMAN_ 48 MVHTGL-K(Ac)-LERALL AC control peptide Adenylyl cyclase-associated protein 1 00080;D3DPU2_HUMAN_00081;F5H6Z3_HUMAN_00058;CAP1_HUMAN_00080 49 KTELIQ-K(Ac)-AKLAEQ AC control peptide 14-3-3 protein theta B0AZS6_HUMAN_00038;E7EX29_HUMAN_00115;E7ESK7_HUMAN_00115;E7EX24_HUMAN_000 50 ASQAES-K(Ac)-VFYLKM AC control peptide 14-3-3 protein zeta/delta 40 51 CIFFEP-K(Ac)-ILYRAA AC control peptide 2-oxoisovalerate dehydrogenase subunit beta, mitochondria 52 ERHKIV-K(Ac)-EIHEQL AC control peptide 2-5-oligoadenylate synthase 2 53 LAKDFE-K(Ac)-AYKTVI AC control peptide 26S protease regulatory subunit 6B H0YJC0_HUMAN_00020;H0YJD2_HUMAN_00017;H0YJE9_HUMAN_00024;H0YJS8_HUMAN_000 54 KKLLEH-K(Ac)-EIDGRL AC control peptide 26S protease regulatory subunit 10B 21;H0YJT1_HUMAN_00030;H0YJY8_HUMAN_00026 55 LPKLYV-K(Ac)-LHYCVS AC control peptide 40S ribosomal protein S26 F8VZW7_HUMAN_00070;RS26L_HUMAN_00070 56 KVDENG-K(Ac)-ISRLRR AC control peptide Ubiquitin-40S ribosomal protein S27a UBC_HUMAN_00048;RS27A_HUMAN_00048;RL40_HUMAN_00048;B2RDW1_HUMAN_00048;B4 DV12_HUMAN_00048;Q96C32_HUMAN_00048;F5GXK7_HUMAN_00048;F5GYU3_HUMAN_00048 ;F5GYX6_HUMAN_00048;F5GZ39_HUMAN_00048;F5H041_HUMAN_00048;F5H265_HUMAN_000 48;F5H2Z3_HUMAN_00048;F5H388_HUMAN_00048;F5H4D8_HUMAN_00048;F5H6Q2_HUMAN_0 57 RLIFAG-K(Ac)-QLEDGR AC control peptide Polyubiquitin-B 0048;F5H747_HUMAN_00048;F5H7K6_HUMAN_00048;F5H7Y5_HUMAN_00048 58 GDETGA-K(Ac)-VERADG AC control peptide 40S ribosomal protein S3a D6RAT0_HUMAN_00212;D6R9B6_HUMAN_00130;H0Y9Y4_HUMAN_00193 59 ITPEEA-K(Ac)-YKLCKV AC control peptide 40S ribosomal protein S4, X isoform 60 VKEKYA-K(Ac)-YLPHSA AC control peptide 40S ribosomal protein S5 61 LADIMA-K(Ac)-RNQKPE AC control peptide 60S ribosomal protein L24 C9JNW5_HUMAN_00093;C9JXB8_HUMAN_00093 62 RREAKV-K(Ac)-FEERYK AC control peptide 60S ribosomal protein L27 63 HPGYFG-K(Ac)-VGMKHY AC control peptide 60S ribosomal protein L27a 64 VKPKEV-K(Ac)-PKIPKG AC control peptide 60S ribosomal protein L29 65 LVMKSG-K(Ac)-YVLGYK AC control peptide 60S ribosomal protein L30 E5RI99_HUMAN_00026;E5RJH3_HUMAN_00026 66 KKEELL-K(Ac)-QLDDLK AC control peptide 60S ribosomal protein L35 F2Z388_HUMAN_00019;H0Y3A0_HUMAN_00019 ACTA_HUMAN_00193;ACTG_HUMAN_00191;ACTH_HUMAN_00192;ACTC_HUMAN_00193;ACTS _HUMAN_00193;ACTBL_HUMAN_00192;B4DUI8_HUMAN_00148;B4DW52_HUMAN_00163;B4E33 5_HUMAN_00167;Q5T8M7_HUMAN_00158;E9PG30_HUMAN_00149;F5GYT4_HUMAN_00110;F5 H0N0_HUMAN_00149;F5H1C1_HUMAN_00158;POTEI_HUMAN_00891;POTEJ_HUMAN_00854;A 67 LTDYLM-K(Ac)-ILTERG AC control peptide Actin, cytoplasmic 1 CTBM_HUMAN_00191 68 NMFQIG-K(Ac)-MRYVSV AC control peptide Activated RNA polymerase II transcriptional coactivator p15 69 KNSSYG-K(Ac)-VEGFWS AC control peptide Activity-dependent neuroprotector homeobox protein B7TY16_HUMAN_00676;H0YJ11_HUMAN_00116;H0YJW3_HUMAN_00062;H7C5W8_HUMAN_00 70 HLRQYE-K(Ac)-SIVNYK AC control peptide Alpha-actinin-1 205;H9KV75_HUMAN_00611;ACTN1_HUMAN_00676;ACTN1_HUMAN_00676 71 SQQILE-K(Ac)-RAYICA AC control peptide Acyl-CoA dehydrogenase family member 9, mitochondria F8WAN8_HUMAN_00475;H0Y8Z9_HUMAN_00371 72 VRHLKT-K(Ac)-PSDEEM AC control peptide Acyl-CoA-binding protein ACBP_HUMAN_00036;ACBP_HUMAN_00020;ACBP_HUMAN_00061;ACBP_HUMAN_00080 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, Q96G95_HUMAN_00184;A8MY43_HUMAN_00184;E9PF13_HUMAN_00184;H3BS02_HUMAN_001 73 KHIEDE-K(Ac)-LVRYFL AC control peptide mitochondrial 84;H3BTL2_HUMAN_00175 [Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, 74 PNDYFS-K(Ac)-EASKLY AC control peptide mitochondrial 75 GSGSKG-K(Ac)-GGEIQP AC control peptide 10 kDa heat shock protein, mitochondrial Acetylome - Acetyltransferase Microarray page 3 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 76 ISSIEQ-K(Ac)-TERNEK AC control peptide 14-3-3 protein beta/alpha Q4VY19_HUMAN_00070;1433B_HUMAN_00068 77 ANTGES-K(Ac)-VFYYKM AC control peptide 14-3-3 protein epsilon 78 LLSVAY-K(Ac)-NVVGGR AC control peptide 14-3-3 protein theta 79 DLYHLI-K(Ac)-KAVAVR AC control peptide 40S ribosomal protein S13 H0YK46_HUMAN_00019;H0YN88_HUMAN_00019;RS17L_HUMAN_00019;H0YN73_HUMAN_0001 80 ARVIIE-K(Ac)-YYTRLG AC control peptide 40S ribosomal protein S17 8;H3BNC9_HUMAN_00278 81 ANGLDN-K(Ac)-LREDLE AC control peptide 40S ribosomal protein S18 82 KETVFT-K(Ac)-SPYQEF AC control peptide 40S ribosomal protein S2 H0YEN5_HUMAN_00165;E9PQD7_HUMAN_00205

83 GKATVP-K(Ac)-TEIREK AC control peptide 40S ribosomal protein S24 E7EPK6_HUMAN_00037;E7ETK0_HUMAN_00037;RS24_HUMAN_00037;RS24_HUMAN_00037 84 KEVPNY-K(Ac)-LITPAV AC control peptide 40S ribosomal protein S25 RL10L_HUMAN_00121;F8W7C6_HUMAN_00070;H7C123_HUMAN_00031;H7C2C5_HUMAN_0003 85 MRGAFG-K(Ac)-PQGTVA AC control peptide 60S ribosomal protein L10 1 86 QTPVFS-K(Ac)-ARYTVR AC control peptide 60S ribosomal protein L11 Q5VVC8_HUMAN_00050;Q5VVC9_HUMAN_00050;RL11_HUMAN_00051 87 ASALII-K(Ac)-ALKEPP AC control peptide 60S ribosomal protein L12 88 PHSAHQ-K(Ac)-YVRQAW AC control peptide 60S ribosomal protein L14 B7Z6S8_HUMAN_00071;E7EPB3_HUMAN_00071 89 DTQWIT-K(Ac)-PVHKHK AC control peptide 60S ribosomal protein L15 90 EERLQA-K(Ac)-KEEIIK AC control peptide 60S ribosomal protein L19

91 LSGNKI-K(Ac)-DLSTIE AC control peptide Acidic leucine-rich nuclear phosphoprotein 32 family member D AN32A_HUMAN_00101;AN32C_HUMAN_00097;F2Z3H3_HUMAN_00101;H0YN26_HUMAN_00101 B4DEC3_HUMAN_00294;B4DW08_HUMAN_00284;A2A274_HUMAN_00598;F5H2A5_HUMAN_005 92 LLEPFD-K(Ac)-WDGKDL AC control peptide Aconitate hydratase, mitochondrial 54 C9J4Z7_HUMAN_00044;C9J6C8_HUMAN_00044;C9JBJ7_HUMAN_00044;C9JEY1_HUMAN_0004 4;C9JFG9_HUMAN_00044;C9JQM8_HUMAN_00044;C9JTT6_HUMAN_00044;C9K057_HUMAN_00 93 SGAKWT-K(Ac)-VHELKE AC control peptide Actin-related protein 2/3 complex subunit 1B 044;F8WCG3_HUMAN_00044 94 KANVFF-K(Ac)-NYEIKN AC control peptide Actin-related protein 2/3 complex subunit 3 B4DM63_HUMAN_00056;C9JZD1_HUMAN_00056;F8VR50_HUMAN_00048 95 VCPDLV-K(Ac)-EFNKYD AC control peptide Actin-related protein 3 B4DTI0_HUMAN_00111;B4DXW1_HUMAN_00189;F5H3P5_HUMAN_00178 96 EMVLSG-K(Ac)-YKSGEQ AC control peptide Actin-related protein 6 F8VSD1_HUMAN_00178;F8W057_HUMAN_00260;G3V1Y1_HUMAN_00178 97 LRVGIP-K(Ac)-ETPALT AC control peptide 3-ketoacyl-CoA thiolase, mitochondrial 98 QTKGYN-K(Ac)-VSPFFV AC control peptide 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondria C9J2G3_HUMAN_00174;C9JQQ2_HUMAN_00174;OXSM_HUMAN_00174 99 LWLTKT-K(Ac)-LIEGLP AC control peptide 39S ribosomal protein L37, mitochondrial 100 FQHSKY-K(Ac)-VDFIEE AC control peptide 39S ribosomal protein L39, mitochondrial C9JG87_HUMAN_00226;RM39_HUMAN_00236 101 LRDIAR-K(Ac)-HGCAFL AC control peptide 4-aminobutyrate aminotransferase, mitochondrial H3BNQ7_HUMAN_00318;H3BRN4_HUMAN_00333 102 LGFKTP-K(Ac)-EAIEGT AC control peptide 40S ribosomal protein S11 B7Z712_HUMAN_00125;C9JL25_HUMAN_00167;E7ESH4_HUMAN_00125;E7EXB4_HUMAN_0012 103 LARSIA-K(Ac)-EGFEKI AC control peptide 60 kDa heat shock protein, mitochondrial 5 104 IANAHR-K(Ac)-PLVIIA AC control peptide 60 kDa heat shock protein, mitochondrial 105 IGIEII-K(Ac)-RTLKIP AC control peptide 60 kDa heat shock protein, mitochondrial 106 VLLSEK-K(Ac)-ISSIQS AC control peptide 60 kDa heat shock protein, mitochondrial 107 EIPKEE-K(Ac)-DPGMGA AC control peptide 60 kDa heat shock protein, mitochondrial 108 NSSPSA-K(Ac)-DIKKIL AC control peptide 60S acidic ribosomal protein P2 E7EW01_HUMAN_00046;E9PKU4_HUMAN_00046;E9PKZ0_HUMAN_00046;G3V1A1_HUMAN_00 109 YIKGIV-K(Ac)-DIIHDP AC control peptide 60S ribosomal protein L8 046 110 GFGNGM-K(Ac)-QMRRTW AC control peptide A-kinase anchor protein 8-like 111 EAMSKL-K(Ac)-PYFLTD AC control peptide Acetyl-CoA acetyltransferase, cytosolic 112 LTDVYN-K(Ac)-IHMGSC AC control peptide Acetyl-CoA acetyltransferase, mitochondrial 113 AASMVL-K(Ac)-DVGLKK AC control peptide Acetyl-CoA acetyltransferase, mitochondrial Q6ZV30_HUMAN_00313;F5H6F4_HUMAN_00275;F8W7Y1_HUMAN_00396;ACS2L_HUMAN_0039 114 AVRLLL-K(Ac)-YGDAWV AC control peptide Acetyl-coenzyme A synthetase 2-like, mitochondrial 6 Acetylome - Acetyltransferase Microarray page 4 of 167

Sequence PEP_FLAG Protein name Uniprot IDs C9JZR4_HUMAN_00156;E9PB03_HUMAN_00184;F5GYF6_HUMAN_00155;H0Y6A0_HUMAN_000 115 KKGLGA-K(Ac)-KGSLGA AC control peptide ADP-ribosylation factor GTPase-activating protein 3 75 116 LKHANA-K(Ac)-PFEVPF AC control peptide ADP-sugar pyrophosphatase 117 VAAAIS-K(Ac)-TAVAPI AC control peptide ADP/ATP translocase 2 118 CLVKIY-K(Ac)-SDGIKG AC control peptide ADP/ATP translocase 2 119 AFKDKY-K(Ac)-QIFLGG AC control peptide ADP/ATP translocase 2 120 FRDEGG-K(Ac)-AFFKGA AC control peptide ADP/ATP translocase 3 121 QEENTE-K(Ac)-LKLKYY AC control peptide 26S proteasome non-ATPase regulatory subunit 12 122 RRRGAD-K(Ac)-AKPPPG AC control peptide 26S proteasome non-ATPase regulatory subunit 3 123 KDPAYL-K(Ac)-DPKVCN AC control peptide 28S ribosomal protein S18c, mitochondrial D6RCM2_HUMAN_00103;H0YAG5_HUMAN_00102 124 CQRFVE-K(Ac)-YTELQK AC control peptide 28S ribosomal protein S23, mitochondrial 125 PEKLSH-K(Ac)-LLEAFH AC control peptide 28S ribosomal protein S7, mitochondrial

126 KLQELE-K(Ac)-YPGIQT AC control peptide 3-hydroxybutyrate dehydrogenase type 2 D6R9U8_HUMAN_00048;D6RFG2_HUMAN_00048;D6RIR6_HUMAN_00048;BDH2_HUMAN_00048 127 QLKSFQ-K(Ac)-IQVRLV AC control peptide 40S ribosomal protein S7 Q57Z92_HUMAN_00074;B5MCP9_HUMAN_00074 128 SNGRQW-K(Ac)-PQLGFN AC control peptide 5-3 exoribonuclease 2 B4DZC3_HUMAN_00742;XRN2_HUMAN_00720 129 AVMDTK-K(Ac)-KKDVSS AC control peptide 5-AMP-activated protein kinase subunit gamma-2 130 KRVLPG-K(Ac)-YLEEIA AC control peptide 6-phosphofructokinase type C Q5VSR7_HUMAN_00478;H0Y3P8_HUMAN_00475;H0Y3Y3_HUMAN_00050 131 VGAQSL-K(Ac)-EMVSKL AC control peptide 6-phosphogluconate dehydrogenase, decarboxylating B4DQJ8_HUMAN_00046;F5H7U0_HUMAN_00059 132 PISDSP-K(Ac)-PPPQRV AC control peptide 6-phosphogluconolactonase 133 RAMELL-K(Ac)-VSKDKR AC control peptide 60S ribosomal protein L36 134 PPGLAV-K(Ac)-ELKZZZ AC control peptide 60S ribosomal protein L38 135 KLNPYA-K(Ac)-TMRRNT AC control peptide 60S ribosomal protein L4 E7EWF1_HUMAN_00333;H3BM89_HUMAN_00239;H3BU31_HUMAN_00132 136 NKYNTP-K(Ac)-YRMIVR AC control peptide 60S ribosomal protein L5 137 LTDAYF-K(Ac)-KKKLRK AC control peptide 60S ribosomal protein L6 138 YKRGYG-K(Ac)-INKKRI AC control peptide 60S ribosomal protein L7 139 KVEELK-K(Ac)-KYGIZZ AC control peptide Acyl-CoA-binding protein ACBP_HUMAN_00100;ACBP_HUMAN_00084;ACBP_HUMAN_00125;ACBP_HUMAN_00144 C9J7L8_HUMAN_00043;H7C5Q2_HUMAN_00057;ACOT9_HUMAN_00070;ACOT9_HUMAN_00043 140 EPELRE-K(Ac)-YLTVQN AC control peptide Acyl-coenzyme A thioesterase 9, mitochondrial ;ACOT9_HUMAN_00112 141 ZMTVFF-K(Ac)-TLRNHW AC control peptide Acylglycerol kinase, mitochondrial E9PG39_HUMAN_00007;F8WDD1_HUMAN_00007;AGK_HUMAN_00007 142 QPNWSP-K(Ac)-VVELCK AC control peptide Adenosine deaminase F5GWI4_HUMAN_00164;F5GXW0_HUMAN_00164 E7EWH4_HUMAN_00093;F8VY04_HUMAN_00051;F8VZG5_HUMAN_00093;F8W1A4_HUMAN_00 093;G3V213_HUMAN_00093;KAD2_HUMAN_00093;KAD2_HUMAN_00093;KAD2_HUMAN_00046; 143 LETPLC-K(Ac)-NGFLLD AC control peptide Adenylate kinase 2, mitochondrial KAD2_HUMAN_00093;KAD2_HUMAN_00046 Q5T0R1_HUMAN_00209;Q5T0R9_HUMAN_00208;Q5T0S3_HUMAN_00060;D3DPU2_HUMAN_00 144 TGLAWS-K(Ac)-TGPVAK AC control peptide Adenylyl cyclase-associated protein 1 209;E7ENY9_HUMAN_00156;F5H6Z3_HUMAN_00186;CAP1_HUMAN_00208 E7EX29_HUMAN_00007;E5RGE1_HUMAN_00007;E5RIR4_HUMAN_00007;E7ESK7_HUMAN_000 145 ZZZZMD-K(Ac)-NELVQK AC control peptide 14-3-3 protein zeta/delta 07;E7EVZ2_HUMAN_00007;E9PD24_HUMAN_00007 1433Z_HUMAN_00120;1433F_HUMAN_00125;B0AZS6_HUMAN_00043;B4DHC4_HUMAN_00103 E7EX29_HUMAN_00120;A2IDB2_HUMAN_00112;E7ESK7_HUMAN_00120;E7EX24_HUMAN_0004 146 SKVFYL-K(Ac)-MKGDYY AC control peptide 14-3-3 protein gamma 5 B7Z6B8_HUMAN_00101;E5RFV2_HUMAN_00101;E5RJD2_HUMAN_00060;E5RJG7_HUMAN_000 147 SSQTGN-K(Ac)-VHAIQC AC control peptide 2,4-dienoyl-CoA reductase, mitochondrial 88 148 GSELIQ-K(Ac)-YLGDGP AC control peptide 26S protease regulatory subunit 4 149 KYIINV-K(Ac)-QFAKFV AC control peptide 26S protease regulatory subunit 7 150 EEKFIV-K(Ac)-ATNGPR AC control peptide 26S protease regulatory subunit 10B H0YJC0_HUMAN_00072;H0YJT1_HUMAN_00082 151 ZZMPLA-K(Ac)-DLLHPS AC control peptide 40S ribosomal protein S27 152 LTYCFN-K(Ac)-PEDKZZ AC control peptide Ubiquitin-40S ribosomal protein S27a 153 CFRQYA-K(Ac)-DIGFIK AC control peptide 40S ribosomal protein S29 Acetylome - Acetyltransferase Microarray page 5 of 167

Sequence PEP_FLAG Protein name Uniprot IDs D6RI02_HUMAN_00027;E9PFI5_HUMAN_00027;F5H4F9_HUMAN_00014;H0Y8L7_HUMAN_00022 154 VVDPFS-K(Ac)-KDWYDV AC control peptide 40S ribosomal protein S3a ;H0Y9Y4_HUMAN_00021 155 KIFVGT-K(Ac)-GIPHLV AC control peptide 40S ribosomal protein S4, X isoform 156 ELINAA-K(Ac)-GSSNSY AC control peptide 40S ribosomal protein S5 157 VQVYRK-K(Ac)-YVIYIE AC control peptide 60S ribosomal protein L26 RL26L_HUMAN_00077;A6NE05_HUMAN_00077;E5RIT6_HUMAN_00077 158 YKTGKN-K(Ac)-WFFQKL AC control peptide 60S ribosomal protein L27 159 VRSGYY-K(Ac)-VLGKGK AC control peptide 60S ribosomal protein L27a E9PJD9_HUMAN_00053;E9PLX7_HUMAN_00075 160 GQGYLI-K(Ac)-DGKLIK AC control peptide 60S ribosomal protein L3 B5MCW2_HUMAN_00242;F2Z3A5_HUMAN_00245;G5E9G0_HUMAN_00242 B7Z4C8_HUMAN_00075;B7Z4E3_HUMAN_00075;C9JU56_HUMAN_00075;H7C2W9_HUMAN_000 161 NKAVWA-K(Ac)-GIRNVP AC control peptide 60S ribosomal protein L31 63;RL31_HUMAN_00075;RL31_HUMAN_00075 162 TGGAAS-K(Ac)-LSKIRV AC control peptide 60S ribosomal protein L35 F2Z388_HUMAN_00043;H0Y3A0_HUMAN_00043 ACTA_HUMAN_00328;ACTG_HUMAN_00326;ACTH_HUMAN_00327;ACTC_HUMAN_00328;ACTS _HUMAN_00328;ACTBL_HUMAN_00327;B4DUI8_HUMAN_00283;B4DW52_HUMAN_00298;B4E33 5_HUMAN_00302;Q5T8M7_HUMAN_00293;Q5T8M8_HUMAN_00238;A6NL76_HUMAN_00240;E7E QV5_HUMAN_00205;E9PG30_HUMAN_00284;F5GYT4_HUMAN_00245;F5H0N0_HUMAN_00284; 163 LAPSTM-K(Ac)-IKIIAP AC control peptide Actin, cytoplasmic 1 F5H1C1_HUMAN_00293 164 GDMQLS-K(Ac)-SEILRT AC control peptide Activating signal cointegrator 1 complex subunit 3 165 VEGFWS-K(Ac)-DQSQWK AC control peptide Activity-dependent neuroprotector homeobox protein ACTN1_HUMAN_00398;B7TY16_HUMAN_00398;D6PXK4_HUMAN_00198;E7EV83_HUMAN_0041 166 LDHLAE-K(Ac)-FRQKAS AC control peptide Alpha-actinin-4 7;H9KV75_HUMAN_00333;ACTN1_HUMAN_00398;ACTN1_HUMAN_00398 B4DFQ6_HUMAN_00321;B4DHT5_HUMAN_00283;B4DUF5_HUMAN_00136;E9PF16_HUMAN_002 167 RLKLHE-K(Ac)-TPEQLR AC control peptide Acyl-CoA synthetase family member 2, mitochondrial 53 168 DFTGKA-K(Ac)-WDAWNE AC control peptide Acyl-CoA-binding protein ACBP_HUMAN_00072;ACBP_HUMAN_00056;ACBP_HUMAN_00097;ACBP_HUMAN_00116 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, Q96G95_HUMAN_00192;A8MY43_HUMAN_00192;E9PF13_HUMAN_00192;H3BS02_HUMAN_001 169 VRYFLD-K(Ac)-TLTSRL AC control peptide mitochondrial 92;H3BTL2_HUMAN_00183 H0YCJ2_HUMAN_00713;H0YGI7_HUMAN_00892;H7C0R8_HUMAN_00892;PLCB1_HUMAN_0097 170 LEKSAK-K(Ac)-DSKKKS AC control peptide 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 2 171 SVKVGD-K(Ac)-VLLPEY AC control peptide 10 kDa heat shock protein, mitochondrial B8ZZ54_HUMAN_00015;B8ZZL8_HUMAN_00070 172 ATQPES-K(Ac)-VFYLKM AC control peptide 14-3-3 protein beta/alpha 173 SKVFYY-K(Ac)-MKGDYH AC control peptide 14-3-3 protein epsilon 174 ISSIEQ-K(Ac)-TDTSDK AC control peptide 14-3-3 protein theta B4DMT8_HUMAN_00033;E9PG15_HUMAN_00068 175 LYHLIK-K(Ac)-AVAVRK AC control peptide 40S ribosomal protein S13 176 SLVIPE-K(Ac)-FQHILR AC control peptide 40S ribosomal protein S18 177 ALAAFL-K(Ac)-KSGKLK AC control peptide 40S ribosomal protein S19 178 FTDHLV-K(Ac)-THTRVS AC control peptide 40S ribosomal protein S2 H0YEN5_HUMAN_00177;E9PQD7_HUMAN_00217

179 ERKNRM-K(Ac)-KVRGTA AC control peptide 40S ribosomal protein S24 E7EPK6_HUMAN_00115;E7ETK0_HUMAN_00115;RS24_HUMAN_00115;RS24_HUMAN_00115 180 LQELLS-K(Ac)-GLIKLV AC control peptide 40S ribosomal protein S25 181 NRGPLD-K(Ac)-WRALHS AC control peptide 60S ribosomal protein L10 182 AEEILE-K(Ac)-GLKVRE AC control peptide 60S ribosomal protein L11 Q5VVC8_HUMAN_00083;Q5VVC9_HUMAN_00083;RL11_HUMAN_00084 183 LKPHFH-K(Ac)-DWQRRV AC control peptide 60S ribosomal protein L13 F5H1S2_HUMAN_00016;H3BTH3_HUMAN_00016 184 VRQAWQ-K(Ac)-ADINTK AC control peptide 60S ribosomal protein L14 B7Z6S8_HUMAN_00079;E7EPB3_HUMAN_00079 185 ITKPVH-K(Ac)-HKEMRG AC control peptide 60S ribosomal protein L15 186 SAPRRN-K(Ac)-LDHYAI AC control peptide 60S ribosomal protein L23a A8MUS3_HUMAN_00108;A8MXA8_HUMAN_00072;H7BY10_HUMAN_00072 187 LDMLAE-K(Ac)-LPNLTH AC control peptide Acidic leucine-rich nuclear phosphoprotein 32 family member B 188 PGGTGI-K(Ac)-PFLERF AC control peptide Actin-binding protein anillin C9J4Z7_HUMAN_00082;C9J6C8_HUMAN_00082;C9JBJ7_HUMAN_00082;C9JEY1_HUMAN_0008 2;C9JFG9_HUMAN_00082;C9JQM8_HUMAN_00082;C9K057_HUMAN_00082;F8WCG3_HUMAN_0 189 AYVWTL-K(Ac)-GRTWKP AC control peptide Actin-related protein 2/3 complex subunit 1B 0082 190 FKNYEI-K(Ac)-NEADRT AC control peptide Actin-related protein 2/3 complex subunit 3 B4DM63_HUMAN_00061;C9JZD1_HUMAN_00061;F8VR50_HUMAN_00053 Acetylome - Acetyltransferase Microarray page 6 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 191 LVKEFN-K(Ac)-YDTDGS AC control peptide Actin-related protein 3 B4DTI0_HUMAN_00115;B4DXW1_HUMAN_00193;F5H3P5_HUMAN_00182 192 VLSGKY-K(Ac)-SGEQIL AC control peptide Actin-related protein 6 F8VSD1_HUMAN_00180;F8W057_HUMAN_00262;G3V1Y1_HUMAN_00180 193 NVRFGT-K(Ac)-LGSDIK AC control peptide 3-ketoacyl-CoA thiolase, mitochondrial C9JWR9_HUMAN_00280;E3W993_HUMAN_00277;E9PER6_HUMAN_00277;H0Y4Z0_HUMAN_00 304;PDPK2_HUMAN_00277;PDPK1_HUMAN_00254;PDPK1_HUMAN_00278;PDPK1_HUMAN_001 194 EYDFPE-K(Ac)-FFPKAR AC control peptide 3-phosphoinositide-dependent protein kinase 1 77 195 TKSCEI-K(Ac)-FLTFKD AC control peptide 39S ribosomal protein L39, mitochondrial C9JG87_HUMAN_00126;RM39_HUMAN_00126 196 ESNLGA-K(Ac)-VFFFKA AC control peptide 39S ribosomal protein L46, mitochondrial 197 TRVFVQ-K(Ac)-EILDKF AC control peptide 4-trimethylaminobutyraldehyde dehydrogenase 198 SVPTWL-K(Ac)-LTSDDV AC control peptide 40S ribosomal protein S13 199 AKEGFE-K(Ac)-ISKGAN AC control peptide 60 kDa heat shock protein, mitochondrial B7Z712_HUMAN_00130;E7ESH4_HUMAN_00130;E7EXB4_HUMAN_00130 200 GEVIVT-K(Ac)-DDAMLL AC control peptide 60 kDa heat shock protein, mitochondrial 201 IIKRTL-K(Ac)-IPAMTI AC control peptide 60 kDa heat shock protein, mitochondrial 202 AVIAEL-K(Ac)-KQSKPV AC control peptide 60 kDa heat shock protein, mitochondrial E7ESH4_HUMAN_00156;E7EXB4_HUMAN_00156;F5GWR2_HUMAN_00012 Q5LJ98_HUMAN_00224;Q5LJ99_HUMAN_00224;Q5LJA0_HUMAN_00224;H0Y9N5_HUMAN_0018 203 LSVETE-K(Ac)-LLKYLE AC control peptide 60 kDa SS-A/Ro ribonucleoprotein 7 204 ISELNG-K(Ac)-NIEDVI AC control peptide 60S acidic ribosomal protein P2 B4E1M5_HUMAN_00121;D6RAN4_HUMAN_00121;E7ESE0_HUMAN_00121;H0Y9V9_HUMAN_00 205 RNFLGE-K(Ac)-YIRRVR AC control peptide 60S ribosomal protein L9 118 C9J7Q4_HUMAN_00087;H0YC52_HUMAN_00077;H7BYM8_HUMAN_00087;H7BZ58_HUMAN_000 68;H7C396_HUMAN_00037;ABHDB_HUMAN_00087;ABHDB_HUMAN_00087;ABHDB_HUMAN_00 206 NFNSIA-K(Ac)-ILAQQT AC control peptide Abhydrolase domain-containing protein 11 080;ABHDB_HUMAN_00080 207 EKAGIP-K(Ac)-EEVKEA AC control peptide Acetyl-CoA acetyltransferase, mitochondrial G3XAB4_HUMAN_00083;H0YEL7_HUMAN_00019;E9PRQ6_HUMAN_00083 208 AAWEAG-K(Ac)-FGNEVI AC control peptide Acetyl-CoA acetyltransferase, mitochondrial 209 CAENTA-K(Ac)-KLNIAR AC control peptide Acetyl-CoA acetyltransferase, mitochondrial Q6ZV30_HUMAN_00559;E9PC79_HUMAN_00437;F5H6F4_HUMAN_00521;ACS2L_HUMAN_0064 210 PKTRSG-K(Ac)-VMRRLL AC control peptide Acetyl-coenzyme A synthetase 2-like, mitochondrial 0 C9JZR4_HUMAN_00157;E9PB03_HUMAN_00185;F5GYF6_HUMAN_00156;H0Y6A0_HUMAN_000 211 KGLGAK-K(Ac)-GSLGAQ AC control peptide ADP-ribosylation factor GTPase-activating protein 3 76 212 FEVPFL-K(Ac)-FZZZZZ AC control peptide ADP-sugar pyrophosphatase 213 ALNFAF-K(Ac)-DKYKQI AC control peptide ADP/ATP translocase 2 214 GIYDTA-K(Ac)-GMLPDP AC control peptide ADP/ATP translocase 2 215 NFAFKD-K(Ac)-YKQIFL AC control peptide ADP/ATP translocase 2 216 ALNFAF-K(Ac)-DKYKQL AC control peptide ADP/ATP translocase 1 217 NIRIMA-K(Ac)-YYTRIT AC control peptide 26S proteasome non-ATPase regulatory subunit 12 218 LKGLNS-K(Ac)-LLDIRS AC control peptide 26S proteasome non-ATPase regulatory subunit 7 219 LTPIIF-K(Ac)-EENLRT AC control peptide 28S ribosomal protein S22, mitochondrial G5E9V5_HUMAN_00210;G5E9W7_HUMAN_00170 E5RFH3_HUMAN_00071;E5RGC7_HUMAN_00051;E5RK86_HUMAN_00071;H0YAT2_HUMAN_00 220 PEVDGE-K(Ac)-YQKGTR AC control peptide 28S ribosomal protein S28, mitochondrial 089;H7C5V3_HUMAN_00156 221 RKHDLH-K(Ac)-MAEANR AC control peptide 28S ribosomal protein S7, mitochondrial 222 IKGAGG-K(Ac)-AFCAGG AC control peptide 3-hydroxyisobutyryl-CoA hydrolase, mitochondria B8ZZZ0_HUMAN_00146;HIBCH_HUMAN_00092 223 QNNVEH-K(Ac)-VETFSG AC control peptide 40S ribosomal protein S7 224 REIQNL-K(Ac)-LFRHPH AC control peptide 5-AMP-activated protein kinase catalytic subunit alpha-2 AAPK1_HUMAN_00080;Q96E92_HUMAN_00071;AAPK1_HUMAN_00080 225 AIQHNY-K(Ac)-MSAFKE AC control peptide 5-nucleotidase domain-containing protein 1 B1APP8_HUMAN_00106;Q5VSR7_HUMAN_00680;H0Y3P8_HUMAN_00677;H0Y757_HUMAN_000 226 DRNFGT-K(Ac)-ISARAM AC control peptide 6-phosphofructokinase type C 41 227 RIILLV-K(Ac)-AGQAVD AC control peptide 6-phosphogluconate dehydrogenase, decarboxylating B4DQJ8_HUMAN_00063;F5H7U0_HUMAN_00076 228 NIWIPM-K(Ac)-PYYTKV AC control peptide 6.8 kDa mitochondrial proteolipid G3V556_HUMAN_00014;G3V5Q3_HUMAN_00014 229 RAMELL-K(Ac)-VSKDKQ AC control peptide 60S ribosomal protein L36 230 LAVKEL-K(Ac)-ZZZZZZ AC control peptide 60S ribosomal protein L38 Acetylome - Acetyltransferase Microarray page 7 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 231 LRQLAQ-K(Ac)-YNCDKM AC control peptide Ubiquitin-60S ribosomal protein L40 F8VRY1_HUMAN_00007;F8VWR1_HUMAN_00007;F8VZ45_HUMAN_00007;F8VZA3_HUMAN_000 232 ZZMAGE-K(Ac)-VEKPDT AC control peptide 60S ribosomal protein L6 07 233 RNFAEL-K(Ac)-IKRLRK AC control peptide 60S ribosomal protein L7 234 VNPLFE-K(Ac)-RPKNFG AC control peptide 60S ribosomal protein L7a 235 ASLRDE-K(Ac)-GALFQA AC control peptide Acyl-coenzyme A thioesterase 2, mitochondrial ACOT1_HUMAN_00042;G3V4F2_HUMAN_00042

236 KIDMCK-K(Ac)-SLSPEQ AC control peptide Acyl-coenzyme A thioesterase 9, mitochondrial C9J7L8_HUMAN_00097;ACOT9_HUMAN_00124;ACOT9_HUMAN_00097;ACOT9_HUMAN_00166 237 AELEIQ-K(Ac)-DALEPG AC control peptide Adenine phosphoribosyltransferase G5E9J2_HUMAN_00114;H3BQB1_HUMAN_00114;H3BQZ9_HUMAN_00087 238 LNVKLT-K(Ac)-LTEKQA AC control peptide Adenosylhomocysteinase 239 RLADFA-K(Ac)-ERASLP AC control peptide Adenylosuccinate lyase B0QY75_HUMAN_00161;E7ERF4_HUMAN_00161;PUR8_HUMAN_00147

ARF3_HUMAN_00036;ARF1_HUMAN_00036;ARF5_HUMAN_00036;B7ZB63_HUMAN_00036;C9J1 Z8_HUMAN_00036;C9JPM4_HUMAN_00036;F5H0C7_HUMAN_00036;F5H3A6_HUMAN_00036;F5 240 KTTILY-K(Ac)-LKLGEI AC control peptide ADP-ribosylation factor 4 H423_HUMAN_00036;F5H6T5_HUMAN_00036;F8WCJ5_HUMAN_00036;F8WDB3_HUMAN_00036 1433G_HUMAN_00050;1433Z_HUMAN_00049;1433F_HUMAN_00050;B4DE78_HUMAN_00050;B4 DHC4_HUMAN_00028;Q4VY19_HUMAN_00051;Q4VY20_HUMAN_00051;E7EX29_HUMAN_00049 ;A2IDB2_HUMAN_00037;E5RIR4_HUMAN_00049;E7ESK7_HUMAN_00049;E7EVZ2_HUMAN_000 241 LLSVAY-K(Ac)-NVVGAR AC control peptide 14-3-3 protein beta/alpha 49;E9PD24_HUMAN_00049;1433B_HUMAN_00049 242 HKKMKL-K(Ac)-IGDPSL AC control peptide 2-5A-dependent ribonuclease 243 LAAEWG-K(Ac)-YGMRFN AC control peptide 2,4-dienoyl-CoA reductase, mitochondrial 244 GSEFVQ-K(Ac)-YLGEGP AC control peptide 26S protease regulatory subunit 6B 245 VIKSYA-K(Ac)-FSATPR AC control peptide 26S protease regulatory subunit 7 246 SSSIVD-K(Ac)-YIGESA AC control peptide 26S protease regulatory subunit 10B H0YJC0_HUMAN_00206;H0YJS8_HUMAN_00167;H0YJX2_HUMAN_00009 247 VKLAVL-K(Ac)-YYKVDE AC control peptide Ubiquitin-40S ribosomal protein S27a UBC_HUMAN_00007;RS27A_HUMAN_00007;RL40_HUMAN_00007;B2RDW1_HUMAN_00007;B4 DV12_HUMAN_00007;Q96C32_HUMAN_00007;F5GXK7_HUMAN_00007;F5GYU3_HUMAN_00007 ;F5GYX6_HUMAN_00007;F5GZ39_HUMAN_00007;F5H041_HUMAN_00007;F5H265_HUMAN_000 07;F5H2Z3_HUMAN_00007;F5H388_HUMAN_00007;F5H4D8_HUMAN_00007;F5H6Q2_HUMAN_0 248 ZMQIFV-K(Ac)-TLTGKT AC control peptide Polyubiquitin-B 0007;F5H747_HUMAN_00007;F5H7K6_HUMAN_00007;F5H7Y5_HUMAN_00007 E9PL09_HUMAN_00062;E9PJH4_HUMAN_00062;E9PK82_HUMAN_00062;E9PL45_HUMAN_0006 2;E9PPU1_HUMAN_00062;E9PQ96_HUMAN_00062;F2Z2S8_HUMAN_00062;H0YCJ7_HUMAN_00 249 QNVLGE-K(Ac)-GRRIRE AC control peptide 40S ribosomal protein S3 059;H0YF32_HUMAN_00052 D6RAS7_HUMAN_00107;D6RAT0_HUMAN_00107;D6RB09_HUMAN_00107;D6RG13_HUMAN_00 124;E9PFI5_HUMAN_00144;F5H4F9_HUMAN_00131;H0Y8L7_HUMAN_00139;D6R9B6_HUMAN_0 250 FCVGFT-K(Ac)-KRNNQI AC control peptide 40S ribosomal protein S3a 0025;H0Y9Y4_HUMAN_00088 251 PEEAKY-K(Ac)-LCKVRK AC control peptide 40S ribosomal protein S4, X isoform 252 LRTFYE-K(Ac)-RMATEV AC control peptide 40S ribosomal protein S6 253 RKAVIV-K(Ac)-NIDDGT AC control peptide 60S ribosomal protein L27 254 DKTVVN-K(Ac)-DVFRDP AC control peptide 60S ribosomal protein L27 255 HMIRKN-K(Ac)-YRPDLR AC control peptide 60S ribosomal protein L28 E9PB24_HUMAN_00101;H0YKD8_HUMAN_00101;RL28_HUMAN_00101 256 LEKIDL-K(Ac)-FIDTTS AC control peptide 60S ribosomal protein L3 F2Z3A5_HUMAN_00317;G5E9G0_HUMAN_00314 257 IVYLYT-K(Ac)-KVGKAP AC control peptide 60S ribosomal protein L34 258 RDLRGK-K(Ac)-KEELLK AC control peptide 60S ribosomal protein L35 F2Z388_HUMAN_00013;H0Y3A0_HUMAN_00013 ACTA_HUMAN_00330;ACTG_HUMAN_00328;ACTH_HUMAN_00329;ACTC_HUMAN_00330;ACTS _HUMAN_00330;ACTBL_HUMAN_00329;B4DUI8_HUMAN_00285;B4DW52_HUMAN_00300;B4E33 5_HUMAN_00304;Q5T8M7_HUMAN_00295;Q5T8M8_HUMAN_00240;A6NL76_HUMAN_00242;E7E QV5_HUMAN_00207;E9PG30_HUMAN_00286;F5GYT4_HUMAN_00247;F5H0N0_HUMAN_00286; 259 PSTMKI-K(Ac)-IIAPPE AC control peptide Actin, cytoplasmic 1 F5H1C1_HUMAN_00295 260 ZZZZMA-K(Ac)-WGEGDP AC control peptide Activator of 90 kDa heat shock protein ATPase homolog 1 B4DUR9_HUMAN_00007;G3V3W9_HUMAN_00007 Acetylome - Acetyltransferase Microarray page 8 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B7TY16_HUMAN_00095;G3V2E8_HUMAN_00030;G3V2N5_HUMAN_00074;G3V2W4_HUMAN_00 030;G3V2X9_HUMAN_00030;G3V5M4_HUMAN_00072;H9KV75_HUMAN_00030;ACTN1_HUMAN_ 261 KISNVN-K(Ac)-ALDFIA AC control peptide Alpha-actinin-1 00095;ACTN1_HUMAN_00095 262 VLKLYD-K(Ac)-IDPEKL AC control peptide Acyl carrier protein, mitochondrial 263 FREYWN-K(Ac)-PEETKS AC control peptide Acyl-CoA synthetase family member 3, mitochondrial F5H362_HUMAN_00174;F5H5A1_HUMAN_00174;F5H755_HUMAN_00174 264 MKAYIN-K(Ac)-VEELKK AC control peptide Acyl-CoA-binding protein ACBP_HUMAN_00094;ACBP_HUMAN_00078;ACBP_HUMAN_00119;ACBP_HUMAN_00138 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, 265 PKKIIE-K(Ac)-WVDFAR AC control peptide mitochondrial Q96G95_HUMAN_00233;A8MY43_HUMAN_00233 H0YCJ2_HUMAN_00717;H0YGI7_HUMAN_00896;H7C0R8_HUMAN_00896;PLCB1_HUMAN_0097 266 AKKDSK-K(Ac)-KSEPSS AC control peptide 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 6 267 KVVLDD-K(Ac)-DYFLFR AC control peptide 10 kDa heat shock protein, mitochondrial 268 LLSVAY-K(Ac)-NVIGAR AC control peptide 14-3-3 protein epsilon

269 VFYLKM-K(Ac)-GDYFRY AC control peptide 14-3-3 protein theta 1433B_HUMAN_00124;B4DMT8_HUMAN_00087;E9PG15_HUMAN_00122;1433B_HUMAN_00122 270 ATNPES-K(Ac)-VFYLKM AC control peptide 14-3-3 protein theta B4DMT8_HUMAN_00080;E9PG15_HUMAN_00115 271 RKHTGG-K(Ac)-ILGFFF AC control peptide 40S ribosomal protein S15a 272 QNPRQY-K(Ac)-IPDWFL AC control peptide 40S ribosomal protein S18 273 GVGSMT-K(Ac)-IYGGRQ AC control peptide 40S ribosomal protein S19 274 ADGIVS-K(Ac)-NFZZZZ AC control peptide 40S ribosomal protein S21 275 NLVLFD-K(Ac)-ATYDKL AC control peptide 40S ribosomal protein S25 276 DAYVLP-K(Ac)-LYVKLH AC control peptide 40S ribosomal protein S26 F8VZW7_HUMAN_00066;RS26L_HUMAN_00066 277 VKKLAK-K(Ac)-YDAFLA AC control peptide 60S ribosomal protein L10a 278 AKHRIS-K(Ac)-EEAMRW AC control peptide 60S ribosomal protein L11 Q5VVC8_HUMAN_00157;RL11_HUMAN_00158 279 EEEKNF-K(Ac)-AFASLR AC control peptide 60S ribosomal protein L13 F5H1S2_HUMAN_00130;H3BUK8_HUMAN_00023 280 KADINT-K(Ac)-WAATRW AC control peptide 60S ribosomal protein L14 B7Z6S8_HUMAN_00085;E7EPB3_HUMAN_00085 F8VWC5_HUMAN_00125;G3V203_HUMAN_00154;H0YHA7_HUMAN_00133;F8VUA6_HUMAN_00 281 VYRHFG-K(Ac)-APGTPH AC control peptide 60S ribosomal protein L18 102 282 YARTDG-K(Ac)-VFQFLN AC control peptide 60S ribosomal protein L24 C9JNW5_HUMAN_00027;C9JXB8_HUMAN_00027 283 HYDLLE-K(Ac)-NINIVR AC control peptide Aconitate hydratase, mitochondrial A2A274_HUMAN_00050;F5H2A5_HUMAN_00050 284 TRSEFY-K(Ac)-HIVLSG AC control peptide Actin-related protein 2 E9PF41_HUMAN_00304;F5H6T1_HUMAN_00244;G3V1L8_HUMAN_00244 285 KTSDFL-K(Ac)-VLNRAR AC control peptide Actin-related protein 2/3 complex subunit 2 C9JWM7_HUMAN_00054;E7ETI0_HUMAN_00035;F8WCF6_HUMAN_00035;F8WDD7_HUMAN_00 286 VVERHN-K(Ac)-PEVEVR AC control peptide Actin-related protein 2/3 complex subunit 4 035;F8WE39_HUMAN_00035;H7C0A3_HUMAN_00035 287 YDTDGS-K(Ac)-WIKQYT AC control peptide Actin-related protein 3 B4DTI0_HUMAN_00122;B4DXW1_HUMAN_00200;F5H3P5_HUMAN_00189

290 EKLEND-K(Ac)-SFRGVI AC control peptide Enoyl-CoA delta isomerase 1, mitochondrial Q96DC0_HUMAN_00030;H3BP91_HUMAN_00081;H3BS70_HUMAN_00030;ECI1_HUMAN_00089 291 NLRSFT-K(Ac)-DAHALI AC control peptide 39S ribosomal protein L39, mitochondrial C9JG87_HUMAN_00194;RM39_HUMAN_00204 292 ELGDYL-K(Ac)-PKYLAQ AC control peptide 39S ribosomal protein L46, mitochondrial 293 KLPRYY-K(Ac)-NIGLGF AC control peptide 40S ribosomal protein S11 294 VKEQIY-K(Ac)-LAKKGL AC control peptide 40S ribosomal protein S13 295 KGVITV-K(Ac)-DGKTLN AC control peptide 60 kDa heat shock protein, mitochondrial E7EXB4_HUMAN_00202;F5GWR2_HUMAN_00058 296 DDAMLL-K(Ac)-GKGDKA AC control peptide 60 kDa heat shock protein, mitochondrial Acetylome - Acetyltransferase Microarray page 9 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 297 GIIDPT-K(Ac)-VVRTAL AC control peptide 60 kDa heat shock protein, mitochondrial 298 VIAELK-K(Ac)-QSKPVT AC control peptide 60 kDa heat shock protein, mitochondrial E7ESH4_HUMAN_00157;E7EXB4_HUMAN_00157;F5GWR2_HUMAN_00013 Q5LJ98_HUMAN_00359;Q5LJ99_HUMAN_00359;Q5LJA0_HUMAN_00359;G5E9R9_HUMAN_0008 299 LDAAFY-K(Ac)-TFKTVE AC control peptide 60 kDa SS-A/Ro ribonucleoprotein 4 300 PSAKDI-K(Ac)-KILDSV AC control peptide 60S acidic ribosomal protein P2 301 VMEHFI-K(Ac)-LYKKKT AC control peptide 78 kDa glucose-regulated protein 302 KAGHFD-K(Ac)-EIVPVL AC control peptide Acetyl-CoA acetyltransferase, cytosolic 303 TPYGGV-K(Ac)-LEDLIV AC control peptide Acetyl-CoA acetyltransferase, mitochondrial 304 QPDVVV-K(Ac)-EDEEYK AC control peptide Acetyl-CoA acetyltransferase, mitochondrial F8W6G0_HUMAN_00082;ACACA_HUMAN_01276;ACACA_HUMAN_01256;ACACA_HUMAN_0137 305 TFLVAQ-K(Ac)-DFRKQV AC control peptide Acetyl-CoA carboxylase 1 1 B3KUV2_HUMAN_00126;Q5QPH3_HUMAN_00431;E7EWU3_HUMAN_00368;F6WZD5_HUMAN_0 306 AIRLLM-K(Ac)-FGDEPV AC control peptide Acetyl-coenzyme A synthetase, cytoplasmic 0416 F8VZA5_HUMAN_00036;F8W153_HUMAN_00036;F8W1E1_HUMAN_00036;ARL17_HUMAN_0003 307 KTTILY-K(Ac)-LKLGET AC control peptide ADP-ribosylation factor-like protein 17 6;ARL17_HUMAN_00036 308 AFKDKY-K(Ac)-QLFLGG AC control peptide ADP/ATP translocase 1 ADT2_MOUSE_00105;ADT2_RAT_00105;ADT2_BOVIN_00105;ADT2_PONAB_00105;ADT2_TACA 309 FLGGVD-K(Ac)-RTQFWR AC control peptide ADP/ATP translocase 2 C_00105;ADT3_BOVIN_00105 310 ARDEGG-K(Ac)-AFFKGA AC control peptide ADP/ATP translocase 2 311 IAAAIS-K(Ac)-TAVAPI AC control peptide ADP/ATP translocase 3 312 SLPAPS-K(Ac)-ALSGPE AC control peptide AF4/FMR2 family member 1 E9PBM3_HUMAN_00688;F5GXF9_HUMAN_00319;F5H1V4_HUMAN_00340 313 TTHLIA-K(Ac)-EEMIHN AC control peptide 26S proteasome non-ATPase regulatory subunit 12 314 IRSYLE-K(Ac)-VATGKL AC control peptide 26S proteasome non-ATPase regulatory subunit 7 315 TYEDID-K(Ac)-RGKYDL AC control peptide 28S ribosomal protein S22, mitochondrial G5E9V5_HUMAN_00254;G5E9W7_HUMAN_00214;H7C5L9_HUMAN_00084 316 LQSSYN-K(Ac)-QRFDQP AC control peptide 28S ribosomal protein S29, mitochondrial E7EM60_HUMAN_00141;RT29_HUMAN_00134 317 AEAIVY-K(Ac)-HGSGRI AC control peptide 28S ribosomal protein S9, mitochondrial 318 KLLELE-K(Ac)-HIRVTI AC control peptide 3-keto-steroid reductase DHB7_HUMAN_00313;DHB7_HUMAN_00286 319 VRLDSQ-K(Ac)-HIDFSL AC control peptide 40S ribosomal protein S9 B4DDT7_HUMAN_00232;F8VYY9_HUMAN_00213;F8VZX1_HUMAN_00158;F8W9D1_HUMAN_001 320 LDVSVT-K(Ac)-ALQHRS AC control peptide 5-AMP-activated protein kinase subunit gamma-1 80;H0YHF8_HUMAN_00029;H0YIC9_HUMAN_00184 321 EPVHLY-K(Ac)-DVKDSI AC control peptide 5-nucleotidase domain-containing protein 3 322 KEQWWL-K(Ac)-LRPLMK AC control peptide 6-phosphofructokinase type C B1APP8_HUMAN_00171;Q5VSR7_HUMAN_00745;H0Y3P8_HUMAN_00742 323 EAWPHI-K(Ac)-TIFQGI AC control peptide 6-phosphogluconate dehydrogenase, decarboxylating B4DQJ8_HUMAN_00141;F5H0L3_HUMAN_00100;F5H7U0_HUMAN_00132 B7Z712_HUMAN_00031;C9JCQ4_HUMAN_00031;C9JL19_HUMAN_00031;C9JL25_HUMAN_0007 3;E7ESH4_HUMAN_00031;E7EXB4_HUMAN_00031;C9J0S9_HUMAN_00031;F8WBB1_HUMAN_0 324 AYAKDV-K(Ac)-FGADAR AC control peptide 60 kDa heat shock protein, mitochondrial 0031 325 GTSSFG-K(Ac)-RRNKTH AC control peptide 60S ribosomal protein L37 D6R9X9_HUMAN_00010;D6RG19_HUMAN_00010 B4DP82_HUMAN_00014;E7EWF1_HUMAN_00014;H3BTP7_HUMAN_00014;H3BU31_HUMAN_00 326 ISVYSE-K(Ac)-GESSGK AC control peptide 60S ribosomal protein L4 014 327 QKYNCD-K(Ac)-MICRKC AC control peptide Ubiquitin-60S ribosomal protein L40 328 SNVKIP-K(Ac)-HLTDAY AC control peptide 60S ribosomal protein L6 329 FAELKI-K(Ac)-RLRKKF AC control peptide 60S ribosomal protein L7 330 TATQLL-K(Ac)-LAHKYR AC control peptide 60S ribosomal protein L7a Q9BR14_HUMAN_00050;A6NDT2_HUMAN_00052;E9PIS4_HUMAN_00052;E9PJN0_HUMAN_000 331 HYWVPA-K(Ac)-RLFGGQ AC control peptide Acyl-coenzyme A thioesterase 8 52;E9PMC4_HUMAN_00052;G5E995_HUMAN_00052;H0Y698_HUMAN_00013

332 SSTSLL-K(Ac)-MAPSAE AC control peptide Acyl-coenzyme A thioesterase 9, mitochondrial H7C5Q2_HUMAN_00176;ACOT9_HUMAN_00217;ACOT9_HUMAN_00190;ACOT9_HUMAN_00259 333 NVIGMD-K(Ac)-PLTLPD AC control peptide Adenosine deaminase F5GWI4_HUMAN_00054;F5GXW0_HUMAN_00054;F5GYD4_HUMAN_00054 334 AEAHLG-K(Ac)-LNVKLT AC control peptide Adenosylhomocysteinase 335 SSAMPY-K(Ac)-RNPMRS AC control peptide Adenylosuccinate lyase B4DUM2_HUMAN_00115;E7ERF4_HUMAN_00309;PUR8_HUMAN_00295 Acetylome - Acetyltransferase Microarray page 10 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B7Z8H8_HUMAN_00118;E5RHC5_HUMAN_00231;E5RHT6_HUMAN_00186;E7EV62_HUMAN_001 78;F8VWH9_HUMAN_00157;F8W1U7_HUMAN_00157;ARFG1_HUMAN_00231;ARFG1_HUMAN_0 336 AKEGAT-K(Ac)-FGSQAS AC control peptide ADP-ribosylation factor GTPase-activating protein 1 0231 E7EX29_HUMAN_00068;E5RIR4_HUMAN_00068;E7ESK7_HUMAN_00068;E7EVZ2_HUMAN_000 337 VSSIEQ-K(Ac)-TEGAEK AC control peptide 14-3-3 protein zeta/delta 68;E9PD24_HUMAN_00068 E9PCR7_HUMAN_00985;E9PDF2_HUMAN_00981;E9PFG7_HUMAN_00820;F5H801_HUMAN_009 338 GYYDYV-K(Ac)-PRLRTT AC control peptide 2-oxoglutarate dehydrogenase, mitochondrial 21;ODO1_HUMAN_00966 339 IIRTFL-K(Ac)-ENCFRQ AC control peptide 2-5-oligoadenylate synthase 2 340 RYIVLA-K(Ac)-DFEKAY AC control peptide 26S protease regulatory subunit 6B 341 GSELVQ-K(Ac)-FIGEGA AC control peptide 26S protease regulatory subunit 8 342 SSAFVG-K(Ac)-TPEASP AC control peptide 26S proteasome non-ATPase regulatory subunit 1 343 AVLKYY-K(Ac)-VDENGK AC control peptide Ubiquitin-40S ribosomal protein S27a UBC_HUMAN_00011;RS27A_HUMAN_00011;RL40_HUMAN_00011;B2RDW1_HUMAN_00011;B4 DV12_HUMAN_00011;Q96C32_HUMAN_00011;F5GXK7_HUMAN_00011;F5GYU3_HUMAN_00011 ;F5GYX6_HUMAN_00011;F5GZ39_HUMAN_00011;F5H041_HUMAN_00011;F5H265_HUMAN_000 11;F5H2Z3_HUMAN_00011;F5H388_HUMAN_00011;F5H4D8_HUMAN_00011;F5H6Q2_HUMAN_0 344 VKTLTG-K(Ac)-TITLEV AC control peptide Polyubiquitin-B 0011;F5H747_HUMAN_00011;F5H7K6_HUMAN_00011;F5H7Y5_HUMAN_00011 D6RG13_HUMAN_00014;D6RI02_HUMAN_00034;E9PFI5_HUMAN_00034;F5H4F9_HUMAN_0002 345 KDWYDV-K(Ac)-APAMFN AC control peptide 40S ribosomal protein S3a 1;H0Y8L7_HUMAN_00029;H0Y9Y4_HUMAN_00028 D6RAS7_HUMAN_00108;D6RAT0_HUMAN_00108;D6RB09_HUMAN_00108;D6RG13_HUMAN_00 125;E9PFI5_HUMAN_00145;F5H4F9_HUMAN_00132;H0Y8L7_HUMAN_00140;D6R9B6_HUMAN_0 346 CVGFTK-K(Ac)-RNNQIR AC control peptide 40S ribosomal protein S3a 0026;H0Y9Y4_HUMAN_00089

347 KHWMLD-K(Ac)-LTGVFA AC control peptide 40S ribosomal protein S4, X isoform RS4Y2_HUMAN_00022;RS4Y1_HUMAN_00022;A6NH36_HUMAN_00022;C9JEH7_HUMAN_00031 348 EAAEYA-K(Ac)-LLAKRM AC control peptide 40S ribosomal protein S6 349 VDIPLD-K(Ac)-TVVNKD AC control peptide 60S ribosomal protein L27 350 HRINFD-K(Ac)-YHPGYF AC control peptide 60S ribosomal protein L27a 351 QRYESL-K(Ac)-GVDPKF AC control peptide 60S ribosomal protein L29 352 FIDTTS-K(Ac)-FGHGRF AC control peptide 60S ribosomal protein L3 RL3L_HUMAN_00373;F2Z3A5_HUMAN_00324;G5E9G0_HUMAN_00321 353 VYLYTK-K(Ac)-VGKAPK AC control peptide 60S ribosomal protein L34 354 DLRGKK-K(Ac)-EELLKQ AC control peptide 60S ribosomal protein L35 F2Z388_HUMAN_00014;H0Y3A0_HUMAN_00014 355 KQVAPE-K(Ac)-PVKKQK AC control peptide Activated RNA polymerase II transcriptional coactivator p15 D6R970_HUMAN_00035;D6RC37_HUMAN_00035;F5H1H8_HUMAN_00035 B4DUR9_HUMAN_00212;G3V438_HUMAN_00077;H0YJ63_HUMAN_00014;H0YJG7_HUMAN_001 356 TCKITL-K(Ac)-ETFLTS AC control peptide Activator of 90 kDa heat shock protein ATPase homolog 1 58 B7TY16_HUMAN_00195;G3V2N5_HUMAN_00174;G3V2W4_HUMAN_00130;G3V2X9_HUMAN_00 357 ELIDYG-K(Ac)-LRKDDP AC control peptide Alpha-actinin-1 130;H9KV75_HUMAN_00130;ACTN1_HUMAN_00195;ACTN1_HUMAN_00195 D6R9Z3_HUMAN_00041;D6RCD8_HUMAN_00041;D6RDK9_HUMAN_00041;D6RGK6_HUMAN_00 358 PVRAFA-K(Ac)-ELFLGK AC control peptide Acyl-CoA dehydrogenase family member 9, mitochondrial 041;D6RJA8_HUMAN_00041;E7EPE0_HUMAN_00041 359 SQAEFE-K(Ac)-AAEEVR AC control peptide Acyl-CoA-binding protein 360 EEVRHL-K(Ac)-TKPSDE AC control peptide Acyl-CoA-binding protein ACBP_HUMAN_00034;ACBP_HUMAN_00018;ACBP_HUMAN_00059;ACBP_HUMAN_00078 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, 361 RRLCEH-K(Ac)-YGNAPR AC control peptide mitochondrial Q96G95_HUMAN_00245;A8MY43_HUMAN_00245 362 NEGGID-K(Ac)-FSRGYE AC control peptide 1,4-alpha-glucan-branching enzyme 363 DGDILG-K(Ac)-YVDZZZ AC control peptide 10 kDa heat shock protein, mitochondrial 364 ISSIEQ-K(Ac)-EENKGG AC control peptide 14-3-3 protein epsilon 365 ZZZZME-K(Ac)-TELIQK AC control peptide 14-3-3 protein theta B4DMT8_HUMAN_00007;E9PG15_HUMAN_00007

366 SKVFYL-K(Ac)-MKGDYF AC control peptide 14-3-3 protein theta 1433B_HUMAN_00122;B4DMT8_HUMAN_00085;E9PG15_HUMAN_00120;1433B_HUMAN_00120 367 PVLLLG-K(Ac)-ERFAGV AC control peptide 40S ribosomal protein S16 368 KDVKDG-K(Ac)-YSQVLA AC control peptide 40S ribosomal protein S18 Acetylome - Acetyltransferase Microarray page 11 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 369 QALEGL-K(Ac)-MVEKDQ AC control peptide 40S ribosomal protein S19 370 SLLALY-K(Ac)-GKKERP AC control peptide 40S ribosomal protein S23 371 TYDKLC-K(Ac)-EVPNYK AC control peptide 40S ribosomal protein S25 372 APRPPP-K(Ac)-PMZZZZ AC control peptide 40S ribosomal protein S26 373 ASESLI-K(Ac)-QIPRIL AC control peptide 60S ribosomal protein L10a 374 KATGDW-K(Ac)-GLRITV AC control peptide 60S ribosomal protein L12 375 VEKKID-K(Ac)-YTEVLK AC control peptide 60S ribosomal protein L13a Q642I1_HUMAN_00083;E7ENU7_HUMAN_00083;E7EQV9_HUMAN_00083;E7EX53_HUMAN_000 376 KGATYG-K(Ac)-PVHHGV AC control peptide 60S ribosomal protein L15 83 377 RHMGIG-K(Ac)-RKGTAN AC control peptide 60S ribosomal protein L19 378 RTRRAV-K(Ac)-FQRAIT AC control peptide 60S ribosomal protein L24 C9JNW5_HUMAN_00077;C9JXB8_HUMAN_00077 B4DEC3_HUMAN_00326;B4DW08_HUMAN_00316;A2A274_HUMAN_00630;F5H2A5_HUMAN_005 379 AAGPWL-K(Ac)-FRGHLD AC control peptide Aconitate hydratase, mitochondrial 86 380 RLEREL-K(Ac)-QLYLER AC control peptide Actin-related protein 2 E9PF41_HUMAN_00327;F5H6T1_HUMAN_00267;G3V1L8_HUMAN_00267 381 MKTITG-K(Ac)-TFSSRZ AC control peptide Actin-related protein 2/3 complex subunit 2 C9JWM7_HUMAN_00108;E7ETI0_HUMAN_00089;F8WCF6_HUMAN_00089;F8WDD7_HUMAN_00 382 EKILCH-K(Ac)-FMRFMM AC control peptide Actin-related protein 2/3 complex subunit 4 089 383 DGSKWI-K(Ac)-QYTGIN AC control peptide Actin-related protein 3 B4DTI0_HUMAN_00125;B4DXW1_HUMAN_00203;F5H3P5_HUMAN_00192

Sequence PEP_FLAG Protein name Uniprot IDs A6NCQ0_HUMAN_00042;A6NHE8_HUMAN_00042;A6NJU6_HUMAN_00042;C9JYY9_HUMAN_00 404 YMDPTGKTRTWES wildtype peptide ADP-sugar pyrophosphatase 042 405 GAKAFFKGAWSNV wildtype peptide ADP/ATP translocase 1 406 LGDCLVKIYKSDG wildtype peptide ADP/ATP translocase 2 407 GGKAFFKGAWSNV wildtype peptide ADP/ATP translocase 2 408 FLGGVDKHTQFWR wildtype peptide ADP/ATP translocase 3 D9YZV2_HUMAN_00213;D9YZV8_HUMAN_00213;F5H7S3_HUMAN_00177;H0YL42_HUMAN_000 409 LMAAEDKYSQKED wildtype peptide Tropomyosin alpha-1 chain 87;H7BYY1_HUMAN_00177;TPM1_HUMAN_00213;TPM1_HUMAN_00213 Aminoacyl tRNA synthase complex-interacting multifunctional 410 QQVSLLKEKAILQ wildtype peptide protein 1 B4DNK3_HUMAN_00033;D6R937_HUMAN_00033;AIMP1_HUMAN_00057 411 EESSIGKFPRCTT wildtype peptide Anaphase-promoting complex subunit 10 412 KIASYSKTPKIER wildtype peptide Ankyrin repeat domain-containing protein 12 Q6PG48_HUMAN_00039;F5GYX2_HUMAN_00039;ANR12_HUMAN_00039 413 LRRVFQKYTKYSK wildtype peptide Annexin A1 414 VFQKYTKYSKHDM wildtype peptide Annexin A1 415 EIATVVKKRNLFA wildtype peptide Aspartate aminotransferase, mitochondrial 416 QVERLIKEFSIYM wildtype peptide Aspartate aminotransferase, mitochondrial 417 LSTPNEKLLGHLV wildtype peptide Aspartate--tRNA ligase, cytoplasmic Q68CR9_HUMAN_00274;D3DP78_HUMAN_00341;H7BZ35_HUMAN_00088

418 FLHSGMKMQKAGP wildtype peptide AT-rich interactive domain-containing protein 1A H0Y488_HUMAN_00509;H0YEW5_HUMAN_00065;ARI1A_HUMAN_01395;ARI1A_HUMAN_01229 419 GQSSPEKKIRIEN wildtype peptide AT-rich interactive domain-containing protein 4A H7C485_HUMAN_00545;ARI4A_HUMAN_00867;ARI4A_HUMAN_00867 420 EKHCEFKQLALDH wildtype peptide Atlastin-3 C9JUU1_HUMAN_00418;F5H6I7_HUMAN_00373 421 PMEFVNKMKKEGK wildtype peptide ATP-citrate synthase B4E3P0_HUMAN_00691;E7ENH9_HUMAN_01016;ACLY_HUMAN_00952 ATP-dependent Clp protease ATP-binding subunit clpX-like, 422 IYNYLDKYVVGQS wildtype peptide mitochondrial Q9H072_HUMAN_00178;H0YM48_HUMAN_00178 B1AHC8_HUMAN_00297;B1AHC7_HUMAN_00338;B1AHC9_HUMAN_00288;F5H1I8_HUMAN_002 423 EETEELKRFDDPG wildtype peptide X-ray repair cross-complementing protein 6 05 424 GPSFPLKGITEQQ wildtype peptide X-ray repair cross-complementing protein 5 425 LKALQEKVEIKQL wildtype peptide X-ray repair cross-complementing protein 5 426 SQIPLSKIKTLFP wildtype peptide X-ray repair cross-complementing protein 5 427 EVAKHPKNPEVGL wildtype peptide Bifunctional glutamate/proline--tRNA ligase E7EMN0_HUMAN_00559;F5H7I7_HUMAN_00542 428 VVRWEFKHPQPFL wildtype peptide Bifunctional glutamate/proline--tRNA ligase 429 FRKQYSKGVSQMP wildtype peptide Bifunctional purine biosynthesis protein PURH C9JLK0_HUMAN_00140;E9PBU3_HUMAN_00198;F5GWY2_HUMAN_00140 430 NKNIFLKDQNIFV wildtype peptide Biliverdin reductase A 431 FNRHNLKYYVLPK wildtype peptide Bloom syndrome protein F5H3V6_HUMAN_00050;F5H7R6_HUMAN_00516;H0YNU5_HUMAN_00863 432 YHRLLDKVELMLP wildtype peptide Brain protein 44 433 FKRGVLKEYGVKV wildtype peptide Carbamoyl-phosphate synthase [ammonia], mitochondrial H0YGP4_HUMAN_00535;CPSM_HUMAN_00076 434 IKAYVTKSPVDAG wildtype peptide Carboxymethylenebutenolidase homolog 435 MMVECSKYHGQLT wildtype peptide Carnitine O-palmitoyltransferase 2, mitochondrial 436 TLADIVKDPVSRT wildtype peptide Casein kinase II subunit alpha Q5U5J2_HUMAN_00102;E7EU96_HUMAN_00102 437 VIPAALKAFRRLV wildtype peptide Cat eye syndrome critical region protein 5 B4E2G8_HUMAN_00827;Q8N1C0_HUMAN_00472;E5RGY7_HUMAN_00072;F5GXI1_HUMAN_005 438 SYVASTKYQKSQG wildtype peptide Catenin alpha-1 24;F6XBD8_HUMAN_00865;F8W845_HUMAN_00739;CTNA1_HUMAN_00866 439 EYNRIQKELEREK wildtype peptide Centrosome-associated protein CEP250 440 QVELFVKAGSDGA wildtype peptide Chloride intracellular channel protein 1 441 KFSAYIKNSRPEA wildtype peptide Chloride intracellular channel protein 4 442 TLQAWSKTTPRRI wildtype peptide Chromatin assembly factor 1 subunit B 443 NKTTLQKMGKKQN wildtype peptide Chromobox protein homolog 3 B8ZZ43_HUMAN_00010;C9JMM0_HUMAN_00010 444 GAADVEKVEEKSA wildtype peptide Chromodomain-helicase-DNA-binding protein 4 F5GWX5_HUMAN_01636;F5H2G1_HUMAN_01617;CHD4_HUMAN_01671 COR1B_HUMAN_00339;B3KRY9_HUMAN_00104;F8W759_HUMAN_00409;CORO6_HUMAN_001 445 EIARFYKLHERKC wildtype peptide Coronin-6 52;CORO6_HUMAN_00152;CORO6_HUMAN_00104;CORO6_HUMAN_00338 Acetylome - Acetyltransferase Microarray page 13 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 446 ITEKMAKAIREWY wildtype peptide CpG-binding protein 447 SKNAKKKNNKKTN wildtype peptide CREB-binding protein 448 KKTNKNKSSISRA wildtype peptide CREB-binding protein 449 DDKHLLKPWDAKK wildtype peptide CREB-regulated transcription coactivator 2 450 YQYVINKERKGDY wildtype peptide CTP synthase 1 451 MVECFNKISRDAD wildtype peptide Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial C9JFV8_HUMAN_00253;D6W5I0_HUMAN_00178;DGUOK_HUMAN_00187;DGUOK_HUMAN_0023 452 EVNTFVKNLZZZZ wildtype peptide Deoxyguanosine kinase, mitochondrial 7;DGUOK_HUMAN_00149;DGUOK_HUMAN_00253 453 EIAFLKKVHEEEI wildtype peptide Desmin 454 EGQNLAKILKDLE wildtype peptide Diacylglycerol kinase alpha G3V4E1_HUMAN_00403;H0YJH4_HUMAN_00094 455 KQGYLWKRGHLRR wildtype peptide Differentially expressed in FDCP 6 homolog B4DHG0_HUMAN_00221;B4DT69_HUMAN_00272;F5H4I0_HUMAN_00270;E9PEX6_HUMAN_002 456 GRRPFTKNLGLEE wildtype peptide Dihydrolipoyl dehydrogenase, mitochondrial 97 457 FIQTFGKEFDKHF wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_03637;PRKDC_HUMAN_03638 458 RMMEIAKAMRLKI wildtype peptide DNA-directed RNA polymerase I subunit RPA49 E7EX70_HUMAN_00303;RPA49_HUMAN_00373 459 NPNEGEKFKQISQ wildtype peptide DnaJ homolog subfamily A member 1 460 GAEEKFKEIAEAY wildtype peptide DnaJ homolog subfamily B member 1 Q5QPJ9_HUMAN_00192;Q5QPK2_HUMAN_00224;E9PBD4_HUMAN_00232;E9PHH5_HUMAN_00 461 RKEVLEKLIEKCV wildtype peptide Dolichol-phosphate mannosyltransferase 192;H0Y368_HUMAN_00232 462 RIKKKTKPIVKPQ wildtype peptide Double-stranded RNA-binding protein Staufen homolog 1 STAU1_HUMAN_00189;STAU1_HUMAN_00195 463 QATENAKEEVRRI wildtype peptide Elongation factor 1-gamma B4DTG2_HUMAN_00182;B4DUP0_HUMAN_00012;E7EMT2_HUMAN_00012 B4DMC6_HUMAN_00239;B4DPU3_HUMAN_00239;F5GZG3_HUMAN_00239;F5H370_HUMAN_00 464 VAKFAAKGEGQLG wildtype peptide Elongation factor 2 239 465 KEDLYLKPIQRTI wildtype peptide Elongation factor 2 F5GZG3_HUMAN_00445;F5H370_HUMAN_00445 466 LTAAITKILAEGG wildtype peptide Elongation factor Tu, mitochondrial 467 VLKVVAKVIRALL wildtype peptide Endonuclease domain-containing 1 protein 468 SSSMDAKLEALKD wildtype peptide Engulfment and cell motility protein 1 C9IZR8_HUMAN_00100;C9JIW2_HUMAN_00100 469 KDPETVKQLGSIL wildtype peptide Exportin-1 470 LLAIIPKYLRASM wildtype peptide Exportin-5 C9J4N8_HUMAN_00024;E7EQK9_HUMAN_00101;H0Y9I3_HUMAN_00088 471 KSDPYVKLKLAGR wildtype peptide Extended synaptotagmin-1 B3KY56_HUMAN_00633;ESYT1_HUMAN_00689 472 LHGEKGKLGQYIR wildtype peptide Na(+)/H(+) exchange regulatory cofactor NHE-RF1 B4DG50_HUMAN_00086;A8MW68_HUMAN_00086;C9JUG7_HUMAN_00086;F8W9N7_HUMAN_0 473 GDLGNGKFLDPKN wildtype peptide F-actin-capping protein subunit alpha-2 0086 474 HFIKDPKNLTLER wildtype peptide F-box only protein 22 H3BUC1_HUMAN_00093;H3BVA4_HUMAN_00083;FBX22_HUMAN_00197 475 LICRIVKGYTLAD wildtype peptide Serine/threonine-protein kinase mTOR B4DZD5_HUMAN_01218;F5GYA6_HUMAN_01218 476 KTGAAGKFKRGKZ wildtype peptide Flap endonuclease 1 E9PGQ4_HUMAN_00066;H0Y7W6_HUMAN_00028;H7BY87_HUMAN_00066;FNBP1_HUMAN_000 477 KEEEEYKYTSCKA wildtype peptide Formin-binding protein 1 66;FNBP1_HUMAN_00066;FNBP1_HUMAN_00066 H3BMQ8_HUMAN_00013;H3BNM5_HUMAN_00013;H3BPS8_HUMAN_00067;H3BQN4_HUMAN_0 478 ALTPEQKKELSDI wildtype peptide Fructose-bisphosphate aldolase A 0013;H3BR04_HUMAN_00013;H3BUH7_HUMAN_00013 ALDOC_HUMAN_00230;B7Z1N6_HUMAN_00191;B7Z3K7_HUMAN_00153;A8MVZ9_HUMAN_0020 479 LEGTLLKPNMVTP wildtype peptide Fructose-bisphosphate aldolase A 2;H3BQN4_HUMAN_00230;H3BT43_HUMAN_00066;H3BU78_HUMAN_00038 480 MPTPVIKAFGILK wildtype peptide Fumarate hydratase, mitochondrial 481 RDPSKIKWGDAGA wildtype peptide Glyceraldehyde-3-phosphate dehydrogenase E7EU54_HUMAN_00086;E7EUT4_HUMAN_00044;E7EUT5_HUMAN_00011 482 VDGPSGKLWRDGR wildtype peptide Glyceraldehyde-3-phosphate dehydrogenase E7EPW1_HUMAN_00020;E7EUT4_HUMAN_00152;E7EUT5_HUMAN_00119 483 IQKMFEKLGITTI wildtype peptide Glycine amidinotransferase, mitochondrial 484 RADHLLKAHLQKL wildtype peptide Glycine--tRNA ligase Acetylome - Acetyltransferase Microarray page 14 of 167

Sequence PEP_FLAG Protein name Uniprot IDs Q6PKC0_HUMAN_00013;Q86T14_HUMAN_00013;H0YLV5_HUMAN_00031;H0YMB3_HUMAN_00 013;H0YNJ6_HUMAN_00031;H0YKK3_HUMAN_00031;H0YMG3_HUMAN_00013;H0YMR9_HUMA N_00013;H0YMV5_HUMAN_00013;H0YN74_HUMAN_00031;H0YNH0_HUMAN_00013;GMPR2_HU 485 DVKLDFKDVLLRP wildtype peptide GMP reductase 2 MAN_00031 486 LRASEGKTVEVPF wildtype peptide GMP reductase 487 PEDEEEKKKMEES wildtype peptide Heat shock protein HSP 90-beta 488 TKKIKEKYIDQEE wildtype peptide Heat shock protein HSP 90-beta 489 GYMMAKKHLEINP wildtype peptide Heat shock protein HSP 90-beta B4DQ69_HUMAN_00041;E7EVW7_HUMAN_00041;F8WDD5_HUMAN_00041;F8WEZ6_HUMAN_0 490 EQRWGAKTIEGSG wildtype peptide Hematopoietic lineage cell-specific protein 0041 491 FMRNFQKGQVTRD wildtype peptide Heme oxygenase 1 492 PKFGIEKEVRVCE wildtype peptide Hepatocyte growth factor-regulated tyrosine kinase substrate E7EU53_HUMAN_00207;F5H5Y5_HUMAN_00207;HGS_HUMAN_00207 493 KSEAGKKGPGRPT wildtype peptide High mobility group protein B2 494 SGKEKSKFDEMAK wildtype peptide High mobility group protein B3 E7EQU1_HUMAN_00059;E7ES08_HUMAN_00059;E9PES6_HUMAN_00059 495 LASKQEKDGTEKR wildtype peptide High mobility group protein HMG-I/HMG-Y H7BYM6_HUMAN_00018;HMGA1_HUMAN_00018;HMGA1_HUMAN_00018 E9PRL6_HUMAN_00046;E9PRM3_HUMAN_00046;H0YEP0_HUMAN_00049;KAT5_HUMAN_00052 496 HYIDFNKRLDEWV wildtype peptide Histone acetyltransferase KAT5 ;KAT5_HUMAN_00085;KAT5_HUMAN_00085 497 SKGPFSKVRTGPG wildtype peptide Histone acetyltransferase KAT6A 498 LTKPTLKRKKPFL wildtype peptide Histone acetyltransferase KAT6A 499 SAPAPKKGSKKAI wildtype peptide Histone H2B type 1-B 500 AITKAQKKDGKKR wildtype peptide Histone H2B type 1-B

501 ZMPEPAKSAPAPK wildtype peptide Histone H2B type 1-K H2B1J_HUMAN_00007;H2BFS_HUMAN_00007;H2B1C_HUMAN_00007;H2B2E_HUMAN_00007

H2B1J_HUMAN_00021;H2B1O_HUMAN_00021;H2BFS_HUMAN_00021;H2B1D_HUMAN_00021;H 2B1C_HUMAN_00021;H2B2E_HUMAN_00021;H2B3B_HUMAN_00021;H2B1H_HUMAN_00021;H2 502 SKKAVTKAQKKDG wildtype peptide Histone H2B type 1-K B1N_HUMAN_00021;H2B1L_HUMAN_00021;H2B2C_HUMAN_00021;H2B2D_HUMAN_00021 503 ZMPELAKSAPAPK wildtype peptide Histone H2B type 1-L 504 ZMPEPVKSAPVPK wildtype peptide Histone H2B type 1-M D6RGD3_HUMAN_00090;D6RIC3_HUMAN_00090;E7ERV7_HUMAN_00090;E7ESQ0_HUMAN_00 505 PKELVRKPYVLND wildtype peptide Nucleolar protein 16 065 506 SLVDFSKALGKHP wildtype peptide Hydroxyacyl-coenzyme A dehydrogenase, mitochondria E9PF18_HUMAN_00206;HCDH_HUMAN_00261 507 DGLQNEKNIVSTP wildtype peptide Hydroxymethylglutaryl-CoA lyase, mitochondria B1AK13_HUMAN_00023;B4DUP4_HUMAN_00048;F5GYT9_HUMAN_00023 508 YCKLVQKSLARML wildtype peptide Hydroxymethylglutaryl-CoA synthase, cytoplasmic 509 PGSPLDKLVSSTS wildtype peptide Hydroxymethylglutaryl-CoA synthase, mitochondria 510 LATWATKELRKLK wildtype peptide Importin subunit beta-1 B7ZAV6_HUMAN_00722;F5H4R7_HUMAN_00651 511 ESGAMTKDLAGCI wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial B4DFL2_HUMAN_00361;B4DSZ6_HUMAN_00283 512 LVYRSYKPVFWSP wildtype peptide Isoleucine--tRNA ligase, mitochondrial 513 LGEKGEKMSKSLG wildtype peptide Isoleucine--tRNA ligase, mitochondrial 514 APSTFSKLKMEIK wildtype peptide Lysine-specific demethylase 4B 515 DWSHYFKIIEDLR wildtype peptide Keratin, type I cytoskeletal 18 Acetylome - Acetyltransferase Microarray page 15 of 167

Sequence PEP_FLAG Protein name Uniprot IDs

K2C6A_HUMAN_00180;K2C6B_HUMAN_00180;K2C1_HUMAN_00197;K2C8_HUMAN_00108;K2C 7_HUMAN_00108;K2C3_HUMAN_00215;K2C5_HUMAN_00185;K22E_HUMAN_00195;K2C6C_HU MAN_00180;K22O_HUMAN_00200;K2C72_HUMAN_00142;K2C71_HUMAN_00147;K2C79_HUMA N_00159;K2C74_HUMAN_00157;K2C1B_HUMAN_00181;K2C73_HUMAN_00149;KRT84_HUMAN_ 00182;K2C78_HUMAN_00128;E7EQV7_HUMAN_00165;E7ES34_HUMAN_00084;E7EU87_HUMA N_00150;E7EUE8_HUMAN_00136;F5H6G5_HUMAN_00180;F8VXB4_HUMAN_00136;F8W1S1_HU MAN_00157;F5GZD1_HUMAN_00108;F8VRG4_HUMAN_00108;F8VU64_HUMAN_00108;F8VUG2_ HUMAN_00108;F8VZY5_HUMAN_00108;F8W0C6_HUMAN_00075;F8W1U3_HUMAN_00148;H9KV 516 FASFIDKVRFLEQ wildtype peptide Keratin, type II cytoskeletal 75 51_HUMAN_00142;K2C72_HUMAN_00142;K2C73_HUMAN_00149 Q3BDU5_HUMAN_00378;Q5TCI8_HUMAN_00297;Q5TCJ4_HUMAN_00378;Q6UYC3_HUMAN_00 378;D6RAQ3_HUMAN_00279;E7EUI9_HUMAN_00266;LMNA_HUMAN_00378;LMNA_HUMAN_003 517 EIHAYRKLLEGEE wildtype peptide Prelamin-A/C 78 C9J1F6_HUMAN_00027;C9J6L0_HUMAN_00027;C9J8K3_HUMAN_00027;C9J9U2_HUMAN_0002 7;C9JAP8_HUMAN_00027;C9JAS0_HUMAN_00027;C9JB33_HUMAN_00027;C9JD87_HUMAN_00 027;C9JI26_HUMAN_00027;C9JI89_HUMAN_00027;C9JI93_HUMAN_00027;C9JM53_HUMAN_000 27;C9JTL3_HUMAN_00027;C9JTM3_HUMAN_00027;C9JXZ3_HUMAN_00027;E7EMA1_HUMAN_0 0027;F8WFD4_HUMAN_00027;PRC2A_HUMAN_00027;PRC2A_HUMAN_00027;PRC2A_HUMAN_ 518 NLFDTYKGKSLEI wildtype peptide Protein PRRC2A 00027

519 SKTGEEKYVEESK wildtype peptide LETM1 and EF-hand domain-containing protein 1, mitochondrial 520 IWDTLQKLGAVYD wildtype peptide Leucine-rich PPR motif-containing protein, mitochondrial B8ZZ38_HUMAN_00155;C9JCA9_HUMAN_00129;F5H4J6_HUMAN_00055 521 LCCRHDKVEDALN wildtype peptide Leucine-rich PPR motif-containing protein, mitochondrial 522 TINQWVKGQTEGK wildtype peptide Leukocyte elastase inhibitor 523 GRQTVDKVMGIPK wildtype peptide Mediator of DNA damage checkpoint protein 1 E7EVA7_HUMAN_00812;F8VV34_HUMAN_00812;MDC1_HUMAN_00812 524 GGEFQGKREKSDK wildtype peptide Mediator of RNA polymerase II transcription subunit 1 525 NIPAPLKPTZZZZ wildtype peptide Mediator of RNA polymerase II transcription subunit 28 B4DJE7_HUMAN_00090;B7Z9I1_HUMAN_00243;Q5T4U5_HUMAN_00312;H0YDT5_HUMAN_0001 526 AMGAFDKTRPVVA wildtype peptide Medium-chain specific acyl-CoA dehydrogenase, mitochondrial 7;ACADM_HUMAN_00283 B4DUX5_HUMAN_00404;F8VQZ7_HUMAN_00426;F8VRR3_HUMAN_00391;G3XA91_HUMAN_00 527 DRLGESKYLMALK wildtype peptide Methionine aminopeptidase 2 404 528 QTASIFKQPVTKI wildtype peptide Methyl-CpG-binding domain protein 3 529 DLGHCEKIKKACG wildtype peptide Multifunctional protein ADE2 D6RF62_HUMAN_00191;E9PBS1_HUMAN_00283;PUR6_HUMAN_00290 Q708E1_HUMAN_00480;E9PI07_HUMAN_00445;E9PJF1_HUMAN_00480;E9PLN0_HUMAN_0048 0;E9PLZ5_HUMAN_00480;E9PNA4_HUMAN_00585;E9PNL6_HUMAN_00598;E9PQQ2_HUMAN_0 0480;E9PRS2_HUMAN_00395;F8W8G5_HUMAN_00480;MYB_HUMAN_00477;MYB_HUMAN_006 530 LAAQEIKYGPLKM wildtype peptide Transcriptional activator Myb 01;MYB_HUMAN_00480

531 AKLVSEKLASYQA wildtype peptide Myc proto-oncogene protein B4E1N7_HUMAN_00129;H0YBG3_HUMAN_00162;H0YBT0_HUMAN_00162;MYC_HUMAN_00163 532 LPEVKPKVEEGGR wildtype peptide Histone-lysine N-methyltransferase MLL2 F5H3W9_HUMAN_00628;F5H6E2_HUMAN_00623;F5H730_HUMAN_00612;MYO1C_HUMAN_006 533 LIRHQVKYLGLLE wildtype peptide Unconventional myosin-Ic 12;MYO1C_HUMAN_00628 C9JMZ0_HUMAN_00117;D6R942_HUMAN_00117;D6RC63_HUMAN_00117;F8W7V7_HUMAN_001 534 TEEKYKKINEEFD wildtype peptide Myocyte-specific enhancer factor 2A 37;MEF2A_HUMAN_00117;MEF2A_HUMAN_00117 Q5H9R2_HUMAN_00030;C9IZN5_HUMAN_00040;F8WAS3_HUMAN_00030;H7BYD0_HUMAN_00 535 LRILYTKILDVLE wildtype peptide NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 026 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, 536 AEIEDVKPAKTVN wildtype peptide mitochondrial E7ETQ4_HUMAN_00081;E9PMX3_HUMAN_00074;E9PPR0_HUMAN_00042;E9PPS5_HUMAN_00 537 WILGEIKTSGLRG wildtype peptide NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial 064;E9PQP1_HUMAN_00069;G3V0I5_HUMAN_00074;NDUV1_HUMAN_00072 538 FKDTHPKFPAGGK wildtype peptide NADH-cytochrome b5 reductase 3 B1AHF3_HUMAN_00097;NB5R3_HUMAN_00097;NB5R3_HUMAN_00153 Acetylome - Acetyltransferase Microarray page 16 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 539 QVLRVVKNFEHLN wildtype peptide NADP-dependent malic enzyme E9PAV3_HUMAN_02005;F8VNW4_HUMAN_00138;F8VU71_HUMAN_00852;F8VZJ2_HUMAN_000 63;F8W0W4_HUMAN_00142;F8W1N5_HUMAN_00063;H0YHX9_HUMAN_00140;NACP1_HUMAN_ 540 QLAAAEKFKVQGE wildtype peptide Nascent polypeptide-associated complex subunit alpha 00141 H3BP61_HUMAN_00025;H3BSG3_HUMAN_00025;GLYR1_HUMAN_00025;GLYR1_HUMAN_0002 541 YPPWPGKIVNPPK wildtype peptide Putative oxidoreductase GLYR1 5;GLYR1_HUMAN_00025 542 TKLIAMKTEKEEM wildtype peptide Nuclear receptor coactivator 2 543 LITGPSKLSRGMP wildtype peptide Nuclear receptor corepressor 1 E7EVK1_HUMAN_01319;NCOR1_HUMAN_01428 NCOR2_HUMAN_01248;C9J0Q5_HUMAN_01230;C9J239_HUMAN_01231;C9J7T7_HUMAN_0080 1;C9JE98_HUMAN_01230;C9JFD3_HUMAN_01240;C9JJF6_HUMAN_01239;NCOR2_HUMAN_012 544 PADVLYKGTITRI wildtype peptide Nuclear receptor corepressor 2 (Fragment) 40;NCOR2_HUMAN_01231;NCOR2_HUMAN_01231 C9J0Q5_HUMAN_02012;C9J239_HUMAN_02013;C9J7T7_HUMAN_01583;C9JE98_HUMAN_0201 2;C9JFD3_HUMAN_02022;C9JJF6_HUMAN_02021;H0Y5V2_HUMAN_00114;NCOR2_HUMAN_003 545 SDPHREKTQSKPF wildtype peptide Nuclear receptor corepressor 2 23;NCOR2_HUMAN_02025;NCOR2_HUMAN_02016;NCOR2_HUMAN_02016 546 SREHALKTQNANQ wildtype peptide Nuclear receptor-interacting protein 1 547 YIRKKNKWLIKIK wildtype peptide Obg-like ATPase 1 C9JCJ9_HUMAN_00084;OLA1_HUMAN_00084 D6R9T5_HUMAN_00069;D6RA54_HUMAN_00096;D6RBN5_HUMAN_00069;D6RC55_HUMAN_00 096;D6RDK1_HUMAN_00042;D6RDK6_HUMAN_00042;D6RG39_HUMAN_00096;D6RI08_HUMAN _00042;D6RIT9_HUMAN_00096;D6RIV2_HUMAN_00042;G8JLN7_HUMAN_00096;OCAD1_HUMA 548 GKLSYVKTCQEKF wildtype peptide OCIA domain-containing protein 1 N_00096;OCAD1_HUMAN_00096 549 PDASVTKLAEQYA wildtype peptide Ornithine carbamoyltransferase, mitochondrial 550 ESLFFDKVRKALR wildtype peptide Paired amphipathic helix protein Sin3a 551 IESLQLKPGQVVY wildtype peptide Palmitoyltransferase ZDHHC3 E9PGS3_HUMAN_00121;F8W6M3_HUMAN_00155;ZDHC3_HUMAN_00121 552 PGTMSEKSVEAAA wildtype peptide Parathymosin 553 AVRLFSKHELFAG wildtype peptide Phenylalanine--tRNA ligase, mitochondrial 554 AGTGALKTDFTRT wildtype peptide Phosphatidylinositide phosphatase SAC1 B4DK71_HUMAN_00395;C9JV50_HUMAN_00133;E9PGZ4_HUMAN_00353 555 ZZMVLIKEFRVVL wildtype peptide Phosphatidylinositol transfer protein beta isoform C9JW90_HUMAN_00007;PIPNB_HUMAN_00007 B4DGX2_HUMAN_00030;Q5JUT2_HUMAN_00041;Q5JUT3_HUMAN_00041;E9PCB2_HUMAN_00 556 NMPSHFKFKEYCP wildtype peptide Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha 048 557 QAYQDQKPGTSGL wildtype peptide Phosphoglucomutase-1 558 DQETIKKLFENLR wildtype peptide Phosphoglucomutase-2 559 IAVNTSKYAESYR wildtype peptide Poly(A)-specific ribonuclease PARN B4DSB0_HUMAN_00324;PARN_HUMAN_00438;PARN_HUMAN_00453

E9PQ56_HUMAN_00233;H0YCP8_HUMAN_00121;H0YEM1_HUMAN_00249;PUF60_HUMAN_002 560 VFEAFGKIKSCTL wildtype peptide Poly(U)-binding-splicing factor PUF60 34;PUF60_HUMAN_00208;PUF60_HUMAN_00191;PUF60_HUMAN_00222;PUF60_HUMAN_00205 PABP3_HUMAN_00259;E7EQV3_HUMAN_00214;E7ERJ7_HUMAN_00227;H0YAP2_HUMAN_000 57;H0YAR2_HUMAN_00128;H0YBQ4_HUMAN_00092;H3BNY3_HUMAN_00259;PABP1_HUMAN_ 561 GKELNGKQIYVGR wildtype peptide Polyadenylate-binding protein 1 00259 562 TSNTVSKLLEKVR wildtype peptide Polymerase I and transcript release factor 563 ILQIMNKTISKPR wildtype peptide Polyribonucleotide nucleotidyltransferase 1, mitochondria 564 MYDIFGKYGPIRQ wildtype peptide Pre-mRNA branch site protein p14 C9JQS9_HUMAN_00060;E7ENC1_HUMAN_00060;E7ETT1_HUMAN_00060;E7ETT4_HUMAN_000 60;E7EUY3_HUMAN_00060;E7EX59_HUMAN_00060;E9PDR0_HUMAN_00060;F5H4H8_HUMAN_ 565 RIDAQHKRGKLTA wildtype peptide Propionyl-CoA carboxylase beta chain, mitochondrial 00060;F8WBI9_HUMAN_00060;PCCB_HUMAN_00060 566 SRGASNKYLVEFR wildtype peptide Proteasomal ubiquitin receptor ADRM1 567 KNYVNGKTFLEKR wildtype peptide Proteasome subunit alpha type-2 Q6MZI6_HUMAN_00093;C9JCK5_HUMAN_00101 568 RHEIVPKDIREEA wildtype peptide Proteasome subunit alpha type-3 G3V4X5_HUMAN_00155;H0YJ03_HUMAN_00058;PSA3_HUMAN_00223 569 EVEQLIKKHEEEE wildtype peptide Proteasome subunit alpha type-4 H0YN18_HUMAN_00207;PSA4_HUMAN_00167 B4DQR4_HUMAN_00102;B4DXJ9_HUMAN_00162;G3V295_HUMAN_00181;G3V5Z7_HUMAN_001 570 STSFLEKKVKKKF wildtype peptide Proteasome subunit alpha type-6 87 Acetylome - Acetyltransferase Microarray page 17 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 571 SVGTAVKDLKQEQ wildtype peptide Protein NPAT 572 TEPEHTKERVKLE wildtype peptide Protein RCC2 Q9H4P6_HUMAN_00098;D6RAY9_HUMAN_00105;D6RCQ4_HUMAN_00094;D6REL4_HUMAN_00 573 ERELAEKYRDRAK wildtype peptide Protein Red 098;E7EQZ7_HUMAN_00098 B4DKC2_HUMAN_00165;D6RCQ1_HUMAN_00117;D6REM9_HUMAN_00117;RUFY3_HUMAN_00 574 KLSEYMKALINKK wildtype peptide Protein RUFY3 241;RUFY3_HUMAN_00181;RUFY3_HUMAN_00128 575 DPLAVDKIMKDLD wildtype peptide Protein S100-A10 576 LNKSELKELLTRE wildtype peptide Protein S100-A4 Q5QPL9_HUMAN_00149;Q5QPM0_HUMAN_00099;Q5QPM1_HUMAN_00165;E9PDF3_HUMAN_0 577 KTNVPVKLFARST wildtype peptide RNA-binding protein Raly 0099;RALY_HUMAN_00149 Pyruvate dehydrogenase E1 component subunit alpha, somatic Q5JPT9_HUMAN_00083;Q5JPU0_HUMAN_00083;Q5JPU1_HUMAN_00121;Q5JPU2_HUMAN_001 578 KADQLYKQKIIRG wildtype peptide form, mitochondrial 11;ODPA_HUMAN_00083;ODPA_HUMAN_00083;ODPA_HUMAN_00121 579 ARNILEKHSLDAS wildtype peptide Pyruvate dehydrogenase protein X component, mitochondria E9PB14_HUMAN_00179;E9PLU0_HUMAN_00134;E9PRI6_HUMAN_00167 Q504U3_HUMAN_00101;E7EUJ4_HUMAN_00101;E7EUQ8_HUMAN_00246;E9PF79_HUMAN_001 93;H3BQ34_HUMAN_00266;H3BTN5_HUMAN_00266;KPYM_HUMAN_00266;KPYM_HUMAN_002 580 EKGKNIKIISKIE wildtype peptide Pyruvate kinase isozymes M1/M2 51 581 GGPEVLKLRSDIA wildtype peptide Quinone oxidoreductase A6NN60_HUMAN_00023;A6NP24_HUMAN_00023;C9JH92_HUMAN_00023 582 LKHTWQKANDQFL wildtype peptide Rab GTPase-binding effector protein 1 F5GZU7_HUMAN_00275;F5H355_HUMAN_00239;RABE1_HUMAN_00282 583 KQSFVLKEGVEYR wildtype peptide Rho GDP-dissociation inhibitor 1 F5H2R5_HUMAN_00021;F5H3P3_HUMAN_00021;F5H6Q0_HUMAN_00021;H0YGX7_HUMAN_000 584 DDELDSKLNYKPP wildtype peptide Rho GDP-dissociation inhibitor 2 16 585 KETIVLKEGSEYR wildtype peptide Rho GDP-dissociation inhibitor 2 F5H3P3_HUMAN_00102;F5H6Q0_HUMAN_00102;H0YGX7_HUMAN_00096 F5H2R5_HUMAN_00033;F5H3P3_HUMAN_00033;F5H6Q0_HUMAN_00033;H0YGX7_HUMAN_000 586 PPQKSLKELQEMD wildtype peptide Rho GDP-dissociation inhibitor 2 28 C9IZD3_HUMAN_00295;C9JE65_HUMAN_00206;RHG17_HUMAN_00295;RHG17_HUMAN_00022 587 IGAGASKLKKLKA wildtype peptide Rho GTPase-activating protein 17 RHG17_HUMAN_00295;RHG17_HUMAN_00295 588 LKHNLEKVEGERK wildtype peptide Rho-associated protein kinase 1 589 GMIFYRKGVKSVD wildtype peptide Serine hydroxymethyltransferase, cytosolic B4DPM9_HUMAN_00133;A8MYA6_HUMAN_00271;E7EW08_HUMAN_00046 590 FESMPYKLNPKTG wildtype peptide Serine hydroxymethyltransferase, mitochondria B7Z9F1_HUMAN_00175;G3V2Y4_HUMAN_00035;G3V5L0_HUMAN_00175 591 VKSKTAKLQDFKS wildtype peptide Serine hydroxymethyltransferase, mitochondria B4DLV4_HUMAN_00368;B7Z9F1_HUMAN_00443;GLYM_HUMAN_00454 B4DED5_HUMAN_00039;A9Z1X7_HUMAN_00140;E9PCT1_HUMAN_00140;SRRM1_HUMAN_001 592 RQIEQEKLASMKK wildtype peptide Serine/arginine repetitive matrix protein 1 40 593 GSSPGMKDIPRTP wildtype peptide Serine/arginine repetitive matrix protein 2 F5GWZ7_HUMAN_00719;SRRM2_HUMAN_01467 594 SANHSLKPLPSVP wildtype peptide Serine/threonine-protein kinase PAK 2 595 DKVIYSKYTDLVP wildtype peptide SNW domain-containing protein 1 E9PGQ7_HUMAN_00115;G3V3A4_HUMAN_00115;G3V5R3_HUMAN_00115 596 NMEELKKEVVMDD wildtype peptide Sodium/potassium-transporting ATPase subunit alpha-4 597 VAELFEKLRKVEG wildtype peptide Sorting nexin-5 Q5QPE5_HUMAN_00238;E9PBC7_HUMAN_00238 B4DGT1_HUMAN_00637;A6NG51_HUMAN_00637;F8W7K3_HUMAN_00637;SPTA2_HUMAN_006 598 LEKAGQKLIDVNH wildtype peptide Spectrin alpha chain, brain 37;SPTA2_HUMAN_00637 B4DGT1_HUMAN_01261;A6NG51_HUMAN_02426;F8W7K3_HUMAN_02401;SPTA2_HUMAN_024 599 ALSSEGKPYVTKE wildtype peptide Spectrin alpha chain, brain 26;SPTA2_HUMAN_02401

SPTB2_HUMAN_00090;B2ZZ89_HUMAN_00090;Q59FP5_HUMAN_00094;F8W6C1_HUMAN_0009 600 DGRMLIKLLEVLS wildtype peptide Spectrin beta chain, erythrocyte 0;SPTB1_HUMAN_00090;SPTB1_HUMAN_00090;SPTB2_HUMAN_00090;SPTB2_HUMAN_00077 601 GKLSLDKVFRERE wildtype peptide Stomatin-like protein 2 602 IKNVPFKIVRASN wildtype peptide Stress-70 protein, mitochondrial B7Z4V2_HUMAN_00129;D6RJI2_HUMAN_00074 603 PKHLNMKLTRAQF wildtype peptide Stress-70 protein, mitochondrial B7Z4V2_HUMAN_00331;F5H3L8_HUMAN_00298;H0YBG6_HUMAN_00050 604 DFDTALKHYDKAK wildtype peptide Stress-induced-phosphoprotein 1 F5H0T1_HUMAN_00222;G3XAD8_HUMAN_00293 Structural maintenance of chromosomes flexible hinge domain- 605 SEQEELKKKPRRS wildtype peptide containing protein 1 SMHD1_HUMAN_01703;SMHD1_HUMAN_00638 Acetylome - Acetyltransferase Microarray page 18 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 606 DGTLFQKSGVISG wildtype peptide Structural maintenance of chromosomes protein 1A 607 APVNIFKAGADEE wildtype peptide T-complex protein 1 subunit beta F5GWF6_HUMAN_00013;F8VQ14_HUMAN_00013 608 YILNLVKQIKKTG wildtype peptide T-complex protein 1 subunit delta B7Z2F4_HUMAN_00138;B7Z9L0_HUMAN_00232;F5H5W3_HUMAN_00258 609 RHAQGEKTAGINV wildtype peptide T-complex protein 1 subunit delta B7Z2F4_HUMAN_00339;B7Z9L0_HUMAN_00433;F5H5W3_HUMAN_00459 610 DGATILKLLDVVH wildtype peptide T-complex protein 1 subunit eta B8ZZC9_HUMAN_00067;F8WAM2_HUMAN_00023;TCPH_HUMAN_00023 611 MALHVPKAPGFAQ wildtype peptide T-complex protein 1 subunit theta B4DEM7_HUMAN_00447;B4DQH4_HUMAN_00393;G5E9B2_HUMAN_00465;H7C2U0_HUMAN_00 612 ANEVISKLYAVHQ wildtype peptide T-complex protein 1 subunit theta 025 613 RDDFEKKMADFHK wildtype peptide Thyroid hormone receptor-associated protein 3 614 EIEKFDKSKLKKT wildtype peptide Thymosin beta-4 TYB4Y_HUMAN_00015;Q5T4B6_HUMAN_00015 615 YVLQDNKFRLLTQ wildtype peptide Trafficking protein particle complex subunit 6B 616 QASDLEKIHLDEK wildtype peptide Transaldolase 617 LKDWFAKRKKFKR wildtype peptide Transcription elongation factor SPT5 B4DJK4_HUMAN_00120;SPT5H_HUMAN_00324 618 PAQCSIKQERISY wildtype peptide Transcription factor ETV6 619 KFGAPQKDVKHLA wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 620 QEGVDPKKLDSLT wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 621 KIIDVVKTGIEQG wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 622 RLSLISKFRFNFL wildtype peptide Trifunctional enzyme subunit beta, mitochondrial B4E2W0_HUMAN_00179;D6W539_HUMAN_00202;F5GZQ3_HUMAN_00186 B4E2W0_HUMAN_00271;B5MD38_HUMAN_00170;D6W539_HUMAN_00294;F5GZQ3_HUMAN_00 623 EQMAKLKPAFIKP wildtype peptide Trifunctional enzyme subunit beta, mitochondrial 278 624 AQEVHEKLRGWLK wildtype peptide Triosephosphate isomerase B7Z5D8_HUMAN_00106;TPIS_HUMAN_00188 625 NLQAPSKLTNSSS wildtype peptide Ubinuclein-2 626 RNALYIKSSKISR wildtype peptide Ubiquitin carboxyl-terminal hydrolase 14 B7Z4N8_HUMAN_00302;A6NJA2_HUMAN_00278 627 SANQTLKELKIQI wildtype peptide Ubiquitin carboxyl-terminal hydrolase 48 B7ZKS7_HUMAN_00968;UBP48_HUMAN_00081 628 GLDHFNKAPKRSR wildtype peptide Ubiquitin carboxyl-terminal hydrolase 7 B7Z815_HUMAN_01068;F5H8E5_HUMAN_00985 B4DW59_HUMAN_00034;B7Z9U9_HUMAN_00034;Q5LJA5_HUMAN_00158;Q5LJA9_HUMAN_001 70;Q5LJB0_HUMAN_00149;E7EQ55_HUMAN_00149;E9PGR0_HUMAN_00148;H0Y4E0_HUMAN_ 00014;H0Y6Y4_HUMAN_00049;UCHL5_HUMAN_00158;UCHL5_HUMAN_00158;UCHL5_HUMAN_ 629 DTKTSAKEEDAFH wildtype peptide Ubiquitin carboxyl-terminal hydrolase isozyme L5 00158 630 KYPPPYKHFWTAE wildtype peptide Isoform 2 of Ubiquitin-associated protein 2-like 631 GTFGKVKVGKHEL wildtype peptide 5-AMP-activated protein kinase catalytic subunit alpha-1 Q96E92_HUMAN_00033;AAPK1_HUMAN_00042 632 SGDVSGKLRIWDT wildtype peptide WD repeat-containing protein 1 A8MVA9_HUMAN_00081;D6RD66_HUMAN_00085 633 ILGTTLKDEGKLL wildtype peptide WD repeat-containing protein 1 B4DY05_HUMAN_00315;A8MVA9_HUMAN_00481;WDR1_HUMAN_00340 634 YQFTGIKKYFNSY wildtype peptide Up-regulated during skeletal muscle growth protein 5 635 DTLHRHKSEFFEK wildtype peptide UPF0364 protein C6orf211 636 LKERLEKFFHRYL wildtype peptide Vacuolar fusion protein CCZ1 homolog B CCZ1_HUMAN_00170;F5H553_HUMAN_00027 E5RFL1_HUMAN_00028;E5RFP6_HUMAN_00028;E5RHE1_HUMAN_00028;E5RHZ6_HUMAN_000 28;E5RJN6_HUMAN_00028;F5H740_HUMAN_00028;F8W7Y3_HUMAN_00028;VDAC3_HUMAN_0 637 YGFGMVKIDLKTK wildtype peptide Voltage-dependent anion-selective channel protein 3 0028 E5RFL1_HUMAN_00012;E5RFP6_HUMAN_00012;E5RHE1_HUMAN_00012;E5RHZ6_HUMAN_000 12;E5RJN6_HUMAN_00012;F5H740_HUMAN_00012;F8W7Y3_HUMAN_00012;VDAC3_HUMAN_0 638 TYCDLGKAAKDVF wildtype peptide Voltage-dependent anion-selective channel protein 3 0012 B0AZR7_HUMAN_00296;B7Z8E5_HUMAN_00386;KCAB1_HUMAN_00415;C9K071_HUMAN_0030 0;F8W6W4_HUMAN_00368;KCAB2_HUMAN_00349;KCAB2_HUMAN_00411;KCAB1_HUMAN_003 639 NKPYSKKDYRSZZ wildtype peptide Voltage-gated potassium channel subunit beta-2 97;KCAB1_HUMAN_00404 640 LSAFAFKQEZZZZ wildtype peptide WD repeat and HMG-box DNA-binding protein 1 C9JW18_HUMAN_01004;F8W7P7_HUMAN_00645 641 GHTDNVKALLLNR wildtype peptide WD repeat-containing protein 48 C9JC24_HUMAN_00144;WDR48_HUMAN_00205;WDR48_HUMAN_00132 642 RGCGSGKLVFFER wildtype peptide WD repeat-containing protein 70 643 EEMAELKAQLYLL wildtype peptide Colorectal mutant cancer protein D6REY2_HUMAN_00570;CRCM_HUMAN_00823 644 VDEEERKRREQQK wildtype peptide Poly(A)-specific ribonuclease PARN B4DSB0_HUMAN_00075;PARN_HUMAN_00189;PARN_HUMAN_00204 Acetylome - Acetyltransferase Microarray page 19 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 645 LSIPKFKVEKMID wildtype peptide Serpin B5 646 DADSFVKFALGSV wildtype peptide Exosome component 10 B4DKG8_HUMAN_00037;EXOSX_HUMAN_00037 647 LVHRARKLAQQYY wildtype peptide Proteasome subunit alpha type-2 Q6MZI6_HUMAN_00014;C9JCK5_HUMAN_00022 UBC_HUMAN_00082;B4DV12_HUMAN_00082;Q96C32_HUMAN_00082;F5GXK7_HUMAN_00082 F5GYU3_HUMAN_00082;F5H041_HUMAN_00082;F5H265_HUMAN_00082;F5H2Z3_HUMAN_0008 2;F5H388_HUMAN_00082;F5H6Q2_HUMAN_00082;F5H747_HUMAN_00082;F5H7K6_HUMAN_00 648 GMQIFVKTLTGKT wildtype peptide Polyubiquitin-B 082;F5H7Y5_HUMAN_00082 B4DZM7_HUMAN_00227;Q3HKR1_HUMAN_00129;E7ERJ8_HUMAN_00253;E9PFK9_HUMAN_00 649 IMDQIEKYIMTRL wildtype peptide Rab5 GDP/GTP exchange factor 226;H7BYE7_HUMAN_00297;RABX5_HUMAN_00213;RABX5_HUMAN_00253 650 SGLGKAKRKACPL wildtype peptide PCNA-associated factor 651 KQKEITKAIKRAQ wildtype peptide 28S ribosomal protein S18c, mitochondrial D6RCM2_HUMAN_00081;H0YAG5_HUMAN_00080 652 SEDIYDKIKTGLA wildtype peptide Estradiol 17-beta-dehydrogenase 12 653 YKDMLAKAIEPQE wildtype peptide Regulator of G-protein signaling 9 RGS9_HUMAN_00419;RGS9_HUMAN_00416;RGS9_HUMAN_00190;RGS9_HUMAN_00416 654 SLHYLRKISTYVQ wildtype peptide TBCC domain-containing protein 1 C9J4M0_HUMAN_00035;C9JUE9_HUMAN_00035 655 KGGKDKKQIQTSP wildtype peptide Serine/threonine-protein kinase LATS2 656 AYEDQTKPVLEYY wildtype peptide GTP:AMP phosphotransferase, mitochondrial E7ET30_HUMAN_00141;KAD3_HUMAN_00111 657 GLKTILKDATLTA wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial F5H0P4_HUMAN_00017;F5H226_HUMAN_00017;F5H4X2_HUMAN_00017;G5EA58_HUMAN_0001 658 AEENSPKMRVIRV wildtype peptide Porphobilinogen deaminase 7 659 FNVPMKKNQITNN wildtype peptide Phosphoglycerate kinase 2 E7ENT4_HUMAN_00897;E9PC93_HUMAN_00785;E9PPH6_HUMAN_00897;F5GXG5_HUMAN_00 660 FRNERGKGKIRHH wildtype peptide Exophilin-5 785;EXPH5_HUMAN_00966 661 KSLEEIKSLFQRW wildtype peptide Probable phospholipid-transporting ATPase VD 662 AKKTVDKHSDEYK wildtype peptide CCAAT/enhancer-binding protein beta D6RAD3_HUMAN_00081;D6RGV9_HUMAN_00076;E2QRM6_HUMAN_00081;H0Y9D8_HUMAN_0 663 ENGIPMKKARNDE wildtype peptide Inorganic pyrophosphatase 2, mitochondrial 0078;IPYR2_HUMAN_00096;IPYR2_HUMAN_00081 B1AKE5_HUMAN_00099;B1AKE6_HUMAN_00099;B1AKE7_HUMAN_00099;B1AKF2_HUMAN_000 55;B1AKF3_HUMAN_00055;B1AKF4_HUMAN_00055;B1AKF5_HUMAN_00055;B1AKF6_HUMAN_ 664 NEIATNKPKITWQ wildtype peptide Trophinin 00055;E7ERU6_HUMAN_00055;G5E9N2_HUMAN_00099;TROP_HUMAN_00099 665 ARQLVEKEKYSEI wildtype peptide Zinc finger FYVE domain-containing protein 26 Q96H43_HUMAN_00262;ZFY26_HUMAN_02395;ZFY26_HUMAN_00607 666 EVGGLVKALRLFQ wildtype peptide Tryptophan 5-hydroxylase 2 E9PFT1_HUMAN_00079;TPH2_HUMAN_00079 C9J813_HUMAN_00385;E7EUR9_HUMAN_00019;E7EX44_HUMAN_00405;E9PGZ1_HUMAN_003 79;F5H1Z9_HUMAN_00390;CALD1_HUMAN_00411;CALD1_HUMAN_00405;CALD1_HUMAN_003 667 FKCFTPKGSSLKI wildtype peptide Caldesmon 85;CALD1_HUMAN_00379;CALD1_HUMAN_00411 668 ILSPRSKESVPEF wildtype peptide Stathmin A2A2D0_HUMAN_00029;STMN1_HUMAN_00029 669 DTCRSLKYPYVAV wildtype peptide COMM domain-containing protein 6 B0QZ40_HUMAN_00054;COMD6_HUMAN_00039 670 KYIQGLKNNMNCE wildtype peptide Protein Njmu-R1 671 RRIRKHKSKKKFK wildtype peptide Glutamate-rich protein 1 B4DMI5_HUMAN_00118;E5RHA3_HUMAN_00024 672 SACYWLKGVRYSD wildtype peptide Zinc transporter ZIP14 E5RFT1_HUMAN_00149;S39AE_HUMAN_00326;S39AE_HUMAN_00326 E7ESW5_HUMAN_00049;E9PED6_HUMAN_00048;F8W9U9_HUMAN_00049;H0Y5T2_HUMAN_00 673 FSWPGPKTVTLKR wildtype peptide Rho GTPase-activating protein 21 038;RHG21_HUMAN_00048 674 AKRKTNKGLAQYL wildtype peptide Transcription elongation factor A protein-like 2 Q96HY3_HUMAN_00080;E7EMB3_HUMAN_00163;E7ETZ0_HUMAN_00117;G3V361_HUMAN_000 675 MTNLGEKLTDEEV wildtype peptide Calmodulin 80;H0Y7A7_HUMAN_00154 676 LYGEKAKNQGGVV wildtype peptide FYVE, RhoGEF and PH domain-containing protein 6 F8VY01_HUMAN_00167;FGD6_HUMAN_00167 677 NYRYYFKKASDEF wildtype peptide Axin-2 678 AAATGAKSRGGAG wildtype peptide Hypothetical LOC441242 679 AKYHKLKFGTDLN wildtype peptide Striatin-4 B4DQH7_HUMAN_00017;F5GYK2_HUMAN_00017;F8VYA6_HUMAN_00136 680 PNTKNDKGETPLL wildtype peptide Ankyrin repeat and SOCS box protein 15 681 KDGDKKKKKKIKE wildtype peptide Heat shock protein HSP 90-alpha Q86U12_HUMAN_00097;HS90A_HUMAN_00398 Acetylome - Acetyltransferase Microarray page 20 of 167

Sequence PEP_FLAG Protein name Uniprot IDs

682 KTSRSAKAGVIFP wildtype peptide Core histone macro-H2A.1 B4DJC3_HUMAN_00018;D6RCF2_HUMAN_00018;H2AY_HUMAN_00018;H2AY_HUMAN_00018 683 VHQAKLKEVRDRL wildtype peptide Coiled-coil domain-containing protein 51 C9JSW8_HUMAN_00131;CCD51_HUMAN_00022 684 KSVEITKQDTKVE wildtype peptide RUN and FYVE domain-containing protein 1 H0YAC8_HUMAN_00168;RUFY1_HUMAN_00271 685 SERVVVKYKPVAL wildtype peptide Hemicentin-1

686 VVEDKDKLIAVFE wildtype peptide Partitioning defective 3 homolog B E9PE87_HUMAN_00074;PAR3L_HUMAN_00074;PAR3L_HUMAN_00074;PAR3L_HUMAN_00074 Q5T9S2_HUMAN_00679;E9PDA0_HUMAN_00759;E9PFB9_HUMAN_01004;G3V388_HUMAN_011 687 MEIEDKKQELLEM wildtype peptide Coiled-coil domain-containing protein 18 22;CCD18_HUMAN_01003 688 PMSQKKKKKZZZZ wildtype peptide PRO0202 689 ELYNIEKAFEVER wildtype peptide Coiled-coil domain-containing protein 164 690 KNKVEKKLEEKEA wildtype peptide Sperm flagellar protein 2 D6REZ4_HUMAN_00887;SPEF2_HUMAN_00887 691 KCLQSLKEMYQDL wildtype peptide 80 kDa MCM3-associated protein E9PF17_HUMAN_01510;CSPG2_HUMAN_02325;CSPG2_HUMAN_01558;CSPG2_HUMAN_00571 692 KTFGKMKPRYEIN wildtype peptide Versican core protein ;CSPG2_HUMAN_03312 693 KSIGITKRNLNNY wildtype peptide Histone-lysine N-methyltransferase SUV39H2 H0Y306_HUMAN_00031;SUV92_HUMAN_00041 694 LKEVDSKLQENPE wildtype peptide Transcription termination factor 1 695 LSKLPFKSIDQKF wildtype peptide Sorting nexin-25 696 LQNKNKKNWDKAR wildtype peptide Angiogenic factor with G patch and FHA domains 1 GSTM2_HUMAN_00199;GSTM4_HUMAN_00199;Q4JNT8_HUMAN_00138;A6NGW8_HUMAN_002 18;E7EWW9_HUMAN_00218;B9ZVX7_HUMAN_00130;E9PHN7_HUMAN_00160;GSTM1_HUMAN 697 KISAYMKSSRFLP wildtype peptide Glutathione S-transferase Mu 1 _00162 B7ZBY5_HUMAN_00874;E9PM80_HUMAN_00821;F5H8H4_HUMAN_00245;H0YCT3_HUMAN_002 698 PSFPTNKAATVKS wildtype peptide Pogo transposable element with ZNF domain 83;POGZ_HUMAN_00830;POGZ_HUMAN_00839;POGZ_HUMAN_00788 699 LLEGDEKEYNADG wildtype peptide Receptor tyrosine-protein kinase erbB-4 ERBB4_HUMAN_00863;ERBB4_HUMAN_00873;ERBB4_HUMAN_00863 700 ELKRKKKWNLEIS wildtype peptide High affinity immunoglobulin gamma Fc receptor IB H0Y355_HUMAN_00213;FCGRC_HUMAN_00228;FCGRB_HUMAN_00136 701 ECLRACKKGFIQR wildtype peptide Tissue factor pathway inhibitor B7Z6Q6_HUMAN_00234;B7Z7M6_HUMAN_00162;Q5JR89_HUMAN_00266;Q5JR91_HUMAN_002 702 NKQELAKKEIDVI wildtype peptide Kinesin-like protein KIF2C 34;KIF2C_HUMAN_00221 703 YKNYEKKLSKKWI wildtype peptide Uncharacterized protein C8orf48 704 NIAAFLKENHDID wildtype peptide Dynein heavy chain 3, axonemal E7EQE5_HUMAN_00502;DYH3_HUMAN_00570;DYH3_HUMAN_00630

Q5JYJ5_HUMAN_00311;Q5JYJ7_HUMAN_00853;E9PH77_HUMAN_00784;F5H091_HUMAN_0066 705 VWIGHKKGATKMK wildtype peptide Proto-oncogene DBL 9;H0Y662_HUMAN_00212;MCF2_HUMAN_00708;MCF2_HUMAN_00768;MCF2_HUMAN_00724 706 KVLVESKLRGRTL wildtype peptide SAC3 domain-containing protein 1 707 PGAPGVKGEPGAP wildtype peptide Collagen alpha-2(I) chain B5MD75_HUMAN_00189;E7ERW1_HUMAN_00189;F8W7A7_HUMAN_00189;CR034_HUMAN_001 708 DAEEALKQQRSRK wildtype peptide Uncharacterized protein C18orf34 89;CR034_HUMAN_00189 709 VSCRICKGDHWTT wildtype peptide Eukaryotic translation initiation factor 3 subunit G 710 KEMFAKKHAAYAW wildtype peptide Bromodomain-containing protein 4 Q4G0X8_HUMAN_00368;E7ESP5_HUMAN_00368;BRD4_HUMAN_00368 711 TPSLRRKTMCGTL wildtype peptide Aurora kinase C AURKC_HUMAN_00163;AURKC_HUMAN_00178 Q5JV20_HUMAN_00548;E7ENN3_HUMAN_08005;E7EQI5_HUMAN_08393;E9PEL9_HUMAN_083 45;F5GXQ9_HUMAN_00573;F8WAI0_HUMAN_00571;H0Y325_HUMAN_01338;H0Y326_HUMAN_0 1039;SYNE1_HUMAN_02917;SYNE1_HUMAN_00578;SYNE1_HUMAN_08345;SYNE1_HUMAN_02 712 VKRLEHKLKEEEE wildtype peptide Nesprin-1 808;SYNE1_HUMAN_00573 713 ILEIRTKNFIFRT wildtype peptide Aryl hydrocarbon receptor 714 VKQMEDKVSQLEM wildtype peptide Cingulin-like protein 1 B3KY57_HUMAN_00334;Q3B7B7_HUMAN_00299;B8ZZU6_HUMAN_00241;E9PBF9_HUMAN_003 57;F5H629_HUMAN_00339;G8JLM5_HUMAN_00339;H7C2N6_HUMAN_00186;ATF2_HUMAN_001 715 PDEKRRKFLERNR wildtype peptide Cyclic AMP-dependent transcription factor ATF-2 81 Acetylome - Acetyltransferase Microarray page 21 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 716 DGSDEKKKLYCIY wildtype peptide ATP synthase subunit alpha, mitochondrial 717 KKKKKGKKGKKDS wildtype peptide Transcriptional regulator ATRX ATRX_HUMAN_01731;ATRX_HUMAN_01818;ATRX_HUMAN_01897;ATRX_HUMAN_01780 H0YF38_HUMAN_00145;E9PE65_HUMAN_00150;F8W807_HUMAN_00175;H7BXJ9_HUMAN_000 718 INGQDLKMDCKEY wildtype peptide Beta-secretase 1 41;BACE1_HUMAN_00250;BACE1_HUMAN_00231;BACE1_HUMAN_00206 H0YF38_HUMAN_00170;E9PE65_HUMAN_00175;F8W807_HUMAN_00200;H7BXJ9_HUMAN_000 719 NLRLPKKVFEAAV wildtype peptide Beta-secretase 1 66;BACE1_HUMAN_00275;BACE1_HUMAN_00256;BACE1_HUMAN_00231 720 SQMCAEKQLELRL wildtype peptide Bromodomain adjacent to zinc finger domain protein 1A F5H239_HUMAN_00625;BAZ1A_HUMAN_00941 Q96BE9_HUMAN_00035;F8VTV8_HUMAN_00035;F8VWX7_HUMAN_00035;F8VYH9_HUMAN_00 721 GHFVALKSVRVPN wildtype peptide Cyclin-dependent kinase 4 035;F8VYY1_HUMAN_00035;F8W1L8_HUMAN_00035 722 ESQGIMKNKEIQE wildtype peptide Centromere protein F 723 GLGGGGKWKREEG wildtype peptide Choline O-acetyltransferase 724 MRPLIAKKNPKIP wildtype peptide Chromodomain-helicase-DNA-binding protein 3 E9PG89_HUMAN_00234;H7C2H0_HUMAN_00050;CHD3_HUMAN_00175 F5GWX5_HUMAN_00266;F5H2G1_HUMAN_00247;F5H6N4_HUMAN_00273;CHD4_HUMAN_0027 725 GPNARRKPKGSPR wildtype peptide Chromodomain-helicase-DNA-binding protein 4 3 726 SPNKKKKKKLKDK wildtype peptide Chromodomain-helicase-DNA-binding protein 5 727 VDSLYNKAKKLTZ wildtype peptide 26S proteasome non-ATPase regulatory subunit 11 728 TFEEIAKSAKITV wildtype peptide 26S proteasome non-ATPase regulatory subunit 13 B4DJ66_HUMAN_00233;PSD13_HUMAN_00300 729 KMHLAGKTEQAKA wildtype peptide 28 kDa heat- and acid-stable phosphoprotein 730 DIDKRGKYDLLRS wildtype peptide 28S ribosomal protein S22, mitochondrial G5E9V5_HUMAN_00257;G5E9W7_HUMAN_00217;H7C5L9_HUMAN_00087 731 QIKVQEKYVWNKR wildtype peptide 28S ribosomal protein S29, mitochondrial E7EM60_HUMAN_00173;RT29_HUMAN_00166 732 QSTLDAKATKAKS wildtype peptide 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase 733 QRTKKNKEEAAEY wildtype peptide 40S ribosomal protein S6 734 IYIINLKRTWEKL wildtype peptide 40S ribosomal protein SA A6NE09_HUMAN_00052;C9J9K3_HUMAN_00052;C9JQR9_HUMAN_00052 735 SAVMDTKKKKDVS wildtype peptide 5-AMP-activated protein kinase subunit gamma-2 736 GNLNTYKRLAIKL wildtype peptide 6-phosphofructokinase type C Q5VSR7_HUMAN_00387;H0Y3P8_HUMAN_00384;B1APP6_HUMAN_00179 737 FNRTVSKVDDFLA wildtype peptide 6-phosphogluconate dehydrogenase, decarboxylating B4DQJ8_HUMAN_00025;F5H7U0_HUMAN_00038 B4DQJ8_HUMAN_00296;B4DV68_HUMAN_00125;F5H0L3_HUMAN_00255;F5H7U0_HUMAN_002 738 KLKGPQKFQFDGD wildtype peptide 6-phosphogluconate dehydrogenase, decarboxylating 87 739 SGRLWSKAIFAGY wildtype peptide 60S ribosomal protein L35a C9K025_HUMAN_00008;F8WB72_HUMAN_00008;F8WBS5_HUMAN_00008 740 RKIEEIKDFLLTA wildtype peptide 60S ribosomal protein L38 B4DP82_HUMAN_00106;E7EWF1_HUMAN_00106;H3BM89_HUMAN_00012;H3BTP7_HUMAN_00 741 RMFAPTKTWRRWH wildtype peptide 60S ribosomal protein L4 106;H3BU31_HUMAN_00106 742 ZZMGFVKVVKNKA wildtype peptide 60S ribosomal protein L5 743 FDTEKEKYEITEQ wildtype peptide 60S ribosomal protein L6 744 FNGTFVKLNKASI wildtype peptide 60S ribosomal protein L7 A8MUD9_HUMAN_00084;C9JIJ5_HUMAN_00084 745 NKVEELKKKYGIZ wildtype peptide Acyl-CoA-binding protein ACBP_HUMAN_00099;ACBP_HUMAN_00083;ACBP_HUMAN_00124;ACBP_HUMAN_00143 746 PQVSESKLZZZZZ wildtype peptide Acyl-coenzyme A thioesterase 8 A6NDT2_HUMAN_00253;H7C5A7_HUMAN_00208 747 VPLVFPKTYGESM wildtype peptide Acyl-coenzyme A thioesterase 9, mitochondrial ACOT9_HUMAN_00374;ACOT9_HUMAN_00347;ACOT9_HUMAN_00416 748 EAVDILKTERLGH wildtype peptide Adenosine deaminase E7EWH4_HUMAN_00014;F8VY04_HUMAN_00014;F8VZG5_HUMAN_00014;F8W1A4_HUMAN_00 014;G3V213_HUMAN_00014;F8VPP1_HUMAN_00014;KAD2_HUMAN_00014;KAD2_HUMAN_0001 749 AEPEYPKGIRAVL wildtype peptide Adenylate kinase 2, mitochondrial 4;KAD2_HUMAN_00014 Q5T0R1_HUMAN_00081;Q5T0R2_HUMAN_00081;Q5T0R3_HUMAN_00081;Q5T0R4_HUMAN_000 81;Q5T0R5_HUMAN_00081;Q5T0R6_HUMAN_00081;Q5T0R7_HUMAN_00081;Q5T0R9_HUMAN_ 750 MVHTGLKLERALL wildtype peptide Adenylyl cyclase-associated protein 1 00080;D3DPU2_HUMAN_00081;F5H6Z3_HUMAN_00058;CAP1_HUMAN_00080 751 LTFCGPKIQTGLD wildtype peptide Alpha-crystallin A chain E7EWH7_HUMAN_00125;E9PHE4_HUMAN_00108 752 MGKGVSKAVEHIN wildtype peptide Alpha-enolase 753 EVYHNLKNVIKEK wildtype peptide Alpha-enolase 754 EFFRSGKYDLDFK wildtype peptide Alpha-enolase 755 EEELGSKAKFAGR wildtype peptide Alpha-enolase Acetylome - Acetyltransferase Microarray page 22 of 167

Sequence PEP_FLAG Protein name Uniprot IDs

ENOG_HUMAN_00343;ENOB_HUMAN_00343;B7Z2X9_HUMAN_00300;D3DTL2_HUMAN_00343;F 756 CNCLLLKVNQIGS wildtype peptide Alpha-enolase 5H0C8_HUMAN_00224;ENOA_HUMAN_00250;ENOB_HUMAN_00315;ENOB_HUMAN_00300 757 LTAEELKKFKLKL wildtype peptide Apoptosis-associated speck-like protein containing a CARD H3BP42_HUMAN_00021;ASC_HUMAN_00021 758 ARQQQEKEMKTTS wildtype peptide Apoptotic chromatin condensation inducer in the nucleus E7EQT4_HUMAN_00319;ACINU_HUMAN_00359 F5H7V4_HUMAN_00158;F6XZ68_HUMAN_00283;F8WC17_HUMAN_00098;H0Y7Q1_HUMAN_002 759 QTEGFRKRWFTMD wildtype peptide Arf-GAP with dual PH domain-containing protein 1 55;H7C2Q4_HUMAN_00200;H7C324_HUMAN_00137 760 DTEEEFKKRAYQC wildtype peptide Arginine--tRNA ligase, cytoplasmic F5H3T8_HUMAN_00081;SYRC_HUMAN_00215 761 KAPSPEKAEEESE wildtype peptide Asparagine synthetase [glutamine-hydrolyzing] E9PCI3_HUMAN_00364;E9PCX6_HUMAN_00302 762 AAKNLDKEYLPIG wildtype peptide Aspartate aminotransferase, mitochondrial 763 SQGQVLKLEAKTD wildtype peptide ATP synthase subunit O, mitochondrial 764 GPLDKYKIQAIDA wildtype peptide ATP synthase subunit s, mitochondrial Q8WXQ4_HUMAN_00073;ATP5S_HUMAN_00101;ATP5S_HUMAN_00101 765 KFEVIEKPQAZZZ wildtype peptide ATP synthase-coupling factor 6, mitochondrial 766 MTITEQKYEGEYR wildtype peptide ATP-binding cassette sub-family D member 3 E7EUE1_HUMAN_00284;F5GYC1_HUMAN_00187;ABCD3_HUMAN_00260 767 LDLTHLKERNVED wildtype peptide ATP-binding cassette sub-family E member 1 768 GVKSWLKPRLGQE wildtype peptide ATP-citrate synthase B4E3P0_HUMAN_00086;E7ENH9_HUMAN_00140;ACLY_HUMAN_00086 Q75MG1_HUMAN_00117;B5MCH7_HUMAN_00041;C9JF98_HUMAN_00117;E7EMS9_HUMAN_00 769 YAQVFNKLIRRYK wildtype peptide Basic leucine zipper and W2 domain-containing protein 2 117;E7ETZ4_HUMAN_00117;E9PFD4_HUMAN_00117;F8WDX8_HUMAN_00117 E9PJA7_HUMAN_00150;E9PK09_HUMAN_00152;E9PK91_HUMAN_00152;E9PKI6_HUMAN_0015 2;E9PQN2_HUMAN_00150;BCLF1_HUMAN_00150;BCLF1_HUMAN_00150;BCLF1_HUMAN_0015 770 SSSPYSKSPVSKR wildtype peptide Bcl-2-associated transcription factor 1 2 E9PK09_HUMAN_00637;E9PK91_HUMAN_00637;E9PKI6_HUMAN_00637;E9PQN2_HUMAN_006 771 RFTSYQKATEEHS wildtype peptide Bcl-2-associated transcription factor 1 35;BCLF1_HUMAN_00635;BCLF1_HUMAN_00635;BCLF1_HUMAN_00464 772 MILTFEKRSYKNQ wildtype peptide Beta-catenin-like protein 1 A2A2P1_HUMAN_00064;C9JS85_HUMAN_00064 773 ZMSQAAKASASAT wildtype peptide Beta-crystallin B1 774 LVKIIYKNTPENL wildtype peptide Beta-lactamase-like protein 2 E7ETZ0_HUMAN_00015;F8WBR5_HUMAN_00014;G3V479_HUMAN_00014;H0Y7A7_HUMAN_000 775 EQIAEFKEAFSLF wildtype peptide Calmodulin 52 776 IEAQKKKMEALSA wildtype peptide Calmodulin-regulated spectrin-associated protein 1 CAMP1_HUMAN_00620;CAMP1_HUMAN_00909 777 MAGIAAKLAKDRE wildtype peptide Calpain-2 catalytic subunit B4DDF4_HUMAN_00025;B4DUT8_HUMAN_00025;H3BQH0_HUMAN_00016;CNN2_HUMAN_0002 778 KNRLLSKYDPQKE wildtype peptide Calponin-2 5 KAPCB_HUMAN_00267;B1APG4_HUMAN_00237;B2RB89_HUMAN_00267;C9JK39_HUMAN_0027 3;F8W831_HUMAN_00229;KAPCA_HUMAN_00259;KAPCB_HUMAN_00314;KAPCB_HUMAN_002 55;KAPCB_HUMAN_00254;KAPCB_HUMAN_00270;KAPCB_HUMAN_00273;KAPCB_HUMAN_002 779 HFSSDLKDLLRNL wildtype peptide cAMP-dependent protein kinase catalytic subunit alpha 71;KAPCB_HUMAN_00274 780 PPKFKVKSSPLIE wildtype peptide CapZ-interacting protein 781 RSSLLRKWYNLMI wildtype peptide Succinate-semialdehyde dehydrogenase, mitochondria F5H328_HUMAN_00038;G5E949_HUMAN_00126 782 QVVAMKKKKIRLE wildtype peptide Putative uncharacterized protein DKFZp686L20222 783 QGTRDSKPIALKE wildtype peptide Cyclin-dependent kinase 12 E7EUM9_HUMAN_00503;CDK12_HUMAN_00504;CDK12_HUMAN_00503 784 REICLLKELKHKN wildtype peptide Cyclin-dependent kinase 5

E7ESS1_HUMAN_00160;P53_HUMAN_00292;P53_HUMAN_00292;P53_HUMAN_00253;P53_HUM 785 EENLRKKGEPHHE wildtype peptide Cellular tumor antigen p53 AN_00253;P53_HUMAN_00253;P53_HUMAN_00160;P53_HUMAN_00160;P53_HUMAN_00160 786 STSRHKKLMFKTE wildtype peptide Cellular tumor antigen p53 P53_HUMAN_00343;P53_HUMAN_00250 787 DVQQYNKLKEDLA wildtype peptide Coiled-coil domain-containing protein 109B 788 KRKAEEKLESYRK wildtype peptide Coiled-coil domain-containing protein 75 Complement component 1 Q subcomponent-binding protein, 789 FLSDEIKEERKIQ wildtype peptide mitochondrial 790 HYAKTAKKMDMKK wildtype peptide Condensin complex subunit 2 B4E189_HUMAN_00504;E9PHA2_HUMAN_00629;H7C415_HUMAN_00081 Acetylome - Acetyltransferase Microarray page 23 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 791 HKDLAGKYRQILE wildtype peptide COP9 signalosome complex subunit 4 B3KST5_HUMAN_00025;D6RAX7_HUMAN_00025;D6RFN0_HUMAN_00025 792 TLKKTGKTVSYLG wildtype peptide Copper transport protein ATOX1 E5RGN3_HUMAN_00051;E5RIM7_HUMAN_00065 B4DUX0_HUMAN_00053;F5GWE2_HUMAN_00138;BACH_HUMAN_00126;BACH_HUMAN_00126; 793 YVPLSLKNVDKVL wildtype peptide Cytosolic acyl coenzyme A thioester hydrolase BACH_HUMAN_00126;BACH_HUMAN_00138;BACH_HUMAN_00117 C9K0G7_HUMAN_00045;E9PCG9_HUMAN_00045;C9JM78_HUMAN_00113;C9JQ90_HUMAN_001 794 IVRSSLKDPEKGM wildtype peptide D-beta-hydroxybutyrate dehydrogenase, mitochondrial 32 A6NJE6_HUMAN_00026;A6NM56_HUMAN_00026;E9PD37_HUMAN_00026;H7BXY0_HUMAN_000 795 LIKELAKYEYMEE wildtype peptide Diamine acetyltransferase 1 50 796 HGGSDIKWVDGGK wildtype peptide Dedicator of cytokinesis protein 10 797 PILRTLKALEYVF wildtype peptide Dedicator of cytokinesis protein 2 E5RFJ0_HUMAN_00738;E7ERW7_HUMAN_00230 798 KFCYADKSLLNKA wildtype peptide Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondria B4DGE4_HUMAN_00039;D2D4A3_HUMAN_00099;E9PF68_HUMAN_00039 799 VQPKHVKEAFRLL wildtype peptide DNA replication licensing factor MCM6 800 VVKKKNKAGVSVK wildtype peptide DNA topoisomerase 2-beta E9PCY5_HUMAN_00362;TOP2B_HUMAN_00362 801 AFRKFLKGLASRK wildtype peptide DNA-(apurinic or apyrimidinic site) lyase G3V3M6_HUMAN_00197;G3V5Q1_HUMAN_00168;H7C4A8_HUMAN_00124 802 CTSVYTKDRAAKC wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_00117;F5GX40_HUMAN_00022;PRKDC_HUMAN_00117 803 KSPVNTKSLFKRL wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_01057;PRKDC_HUMAN_01057 804 KFSMKMKMIDSAR wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_03240;PRKDC_HUMAN_03241 805 PFRAPTKPPVGPK wildtype peptide ELL-associated factor 1 806 AYTLGVKQLIVGV wildtype peptide Elongation factor 1-alpha 1 EF1A2_HUMAN_00146;F8W6I0_HUMAN_00146;EF1A3_HUMAN_00146 807 KLEDGPKFLKSGD wildtype peptide Elongation factor 1-alpha 1 Q6IQ15_HUMAN_00371;F8W6I0_HUMAN_00390;EF1A3_HUMAN_00392 808 VIKAVDKKAAGAG wildtype peptide Elongation factor 1-alpha 1 Q6IQ15_HUMAN_00422;EF1A3_HUMAN_00443 809 EVSAYIKKIGYNP wildtype peptide Elongation factor 1-alpha 2 810 PVGYGIKKLQIQC wildtype peptide Elongation factor 1-beta 811 EENPASKFSSASK wildtype peptide Eukaryotic translation initiation factor 4B B4DS13_HUMAN_00547;E7EPC9_HUMAN_00562;E7EX17_HUMAN_00591 812 REEVVQKEQEZZZ wildtype peptide Eukaryotic translation initiation factor 4H 813 KQKKNTKDEFEER wildtype peptide Eukaryotic translation initiation factor 5B Q6P2E8_HUMAN_00028;D6RB59_HUMAN_00028;D6RBR9_HUMAN_00028;H7BXW1_HUMAN_00 814 RPDQLDKVEQYRR wildtype peptide Exocyst complex component 3 038;EXOC3_HUMAN_00039 815 YRIFNNKSSVDLK wildtype peptide Exosome complex component RRP42 816 RSLKYGKVSPSLV wildtype peptide Exosome complex component RRP4 817 EFTVDAKHGGKAP wildtype peptide Filamin-A A6NDY9_HUMAN_00673;Q5HY54_HUMAN_00700;FLNA_HUMAN_00700 818 DQEFTVKSKGAGG wildtype peptide Filamin-A A6NDY9_HUMAN_00967;Q5HY54_HUMAN_00994;FLNA_HUMAN_00994 819 DAKHGGKAPLRVQ wildtype peptide Filamin-A A6NDY9_HUMAN_00677;Q5HY54_HUMAN_00704;FLNA_HUMAN_00704 Q5HY54_HUMAN_01984;E7EWU2_HUMAN_00215;E9PHF0_HUMAN_00157;FLNA_HUMAN_0201 820 EHLVHVKKNGQHV wildtype peptide Filamin-A 6 821 TNGQYVKQGKFGA wildtype peptide FK506-binding protein 15 FKB15_HUMAN_00092;FKB15_HUMAN_00092 822 EWAYGKKGQPDAK wildtype peptide Peptidyl-prolyl cis-trans isomerase FKBP3 B3KV55_HUMAN_00378;B4DGN5_HUMAN_00412;F5GYQ4_HUMAN_00477;F8WA20_HUMAN_00 823 YVNAIEKVFKVYN wildtype peptide Glutamate dehydrogenase 1, mitochondrial 502;H0YFJ0_HUMAN_00244 824 KHVFVEKVLQRLF wildtype peptide Glutamate-rich protein 1 825 PTFLFFKNSQKID wildtype peptide Glutaredoxin-3

826 KVKNQLKETTEAA wildtype peptide Glutathione S-transferase kappa 1 E9PFN5_HUMAN_00169;GSTK1_HUMAN_00225;GSTK1_HUMAN_00157;GSTK1_HUMAN_00126 827 EDYAGLKEEFRKE wildtype peptide Glutathione S-transferase omega-1 Q5TA02_HUMAN_00115;D3DRA3_HUMAN_00115 828 ALPGQLKPFETLL wildtype peptide Glutathione S-transferase P A8K7Q2_HUMAN_00365;E9PKE3_HUMAN_00582;E9PNE6_HUMAN_00455;E9PS65_HUMAN_001 829 QQKELEKVCNPII wildtype peptide Heat shock cognate 71 kDa protein 92 HSP74_HUMAN_00274;D6RJ96_HUMAN_00233;E7ES43_HUMAN_00305;E9PDE8_HUMAN_0024 830 QECEKLKKLMSAN wildtype peptide Heat shock 70 kDa protein 4L 8;F5H3R0_HUMAN_00274 831 LQQRLIKFFIDQS wildtype peptide Heat shock protein 75 kDa, mitochondrial Acetylome - Acetyltransferase Microarray page 24 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 832 VVEITGKHEERQD wildtype peptide Heat shock protein beta-1 833 DSQNRKKLSELLR wildtype peptide Heat shock protein HSP 90-alpha Q86U12_HUMAN_00279;HS90A_HUMAN_00580 E9PHH7_HUMAN_00040;E9PHI1_HUMAN_00040;E9PHI2_HUMAN_00040;H0Y598_HUMAN_0002 834 QQSKILKVIRKNI wildtype peptide Heat shock protein HSP 90-beta 8;H0Y5S7_HUMAN_00028;H0Y6E4_HUMAN_00028 835 YKEESKKALPPEK wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00600;HNRPU_HUMAN_00656 836 DKIVLQKYHTING wildtype peptide Heterogeneous nuclear ribonucleoproteins A2/B1 High mobility group nucleosome-binding domain-containing protein 837 SARLSAKPAPPKP wildtype peptide 4 HMGN2_HUMAN_00031;HMGN3_HUMAN_00033;HMGN3_HUMAN_00033 Q5T7C0_HUMAN_00082;Q5T7C4_HUMAN_00082;Q5T7C6_HUMAN_00082;E9PFF0_HUMAN_000 838 KTYIPPKGETKKK wildtype peptide High mobility group protein B1 82;HGB1A_HUMAN_00082 839 DKQPYEKKAAKLK wildtype peptide High mobility group protein B1 Q5T7C0_HUMAN_00043;Q5T7C4_HUMAN_00043;Q5T7C6_HUMAN_00043;E9PFF0_HUMAN_000 840 NFSEFSKKCSERW wildtype peptide High mobility group protein B1 43 841 NDEELNKLLGRVT wildtype peptide Histone H2A type 1-B/E H2A3_HUMAN_00096;H2A1C_HUMAN_00096 H2A1D_HUMAN_00096;H2A2C_HUMAN_00096;H2A2A_HUMAN_00096;H2A1H_HUMAN_00096;H 2A1J_HUMAN_00096;H2AJ_HUMAN_00096;C9JE22_HUMAN_00096;H0YFX9_HUMAN_00059;H2 842 NDEELNKLLGKVT wildtype peptide Histone H2A type 1 AJ_HUMAN_00096 A6NFA8_HUMAN_00012;A8MQC5_HUMAN_00012;C9J0D1_HUMAN_00012;C9J386_HUMAN_000 843 AGKDSGKAKAKAV wildtype peptide Histone H2A.V 12;H2AV_HUMAN_00012 844 AGKDSGKAKTKAV wildtype peptide Histone H2A.Z 845 KGATISKKGFKKA wildtype peptide Histone H2B type 1-A 846 FKKAVVKTQKKEG wildtype peptide Histone H2B type 1-A 847 TSDHFTKPSPRAD wildtype peptide Histone-lysine N-methyltransferase MLL3 MLL3_HUMAN_01070;MLL3_HUMAN_02009 848 SMETPAKTEEIKL wildtype peptide Histone-lysine N-methyltransferase MLL3 H0Y765_HUMAN_00300;H7BY37_HUMAN_01220;MLL3_HUMAN_02775;MLL3_HUMAN_03714 849 KHSPQKKSTVTNE wildtype peptide Histone-lysine N-methyltransferase MLL3 H7BY37_HUMAN_00321;MLL3_HUMAN_01876;MLL3_HUMAN_02815 850 TVQWWFKKFCKGD wildtype peptide Histone-lysine N-methyltransferase SETMAR B9ZVV8_HUMAN_00155;E7EN68_HUMAN_00252 851 VTQVVLKGAPGQP wildtype peptide Host cell factor 1 A6NEM2_HUMAN_00836;HCFC1_HUMAN_00767 852 EVAEGGKAELERL wildtype peptide Hsp90 co-chaperone Cdc37 853 TKPYGTKFDRRRP wildtype peptide Intron-binding protein aquarius 854 ANVVHVKSLPGYM wildtype peptide Isocitrate dehydrogenase [NAD] subunit beta, mitochondria 855 TITPDEKRVEEFK wildtype peptide Isocitrate dehydrogenase [NADP] cytoplasmic 856 HVDIQLKYFDLGL wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial 857 LVPGWTKPITIGR wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial B4DFL2_HUMAN_00114;B4DSZ6_HUMAN_00036 858 FQEIFDKHYKTDF wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial B4DFL2_HUMAN_00220;B4DSZ6_HUMAN_00142;H0YL11_HUMAN_00163 859 FEELGVKFVKKPD wildtype peptide Lactoylglutathione lyase Q3BDU5_HUMAN_00270;Q5TCI8_HUMAN_00189;Q5TCJ4_HUMAN_00270;Q6UYC3_HUMAN_00 270;D6RAQ3_HUMAN_00171;E7EUI9_HUMAN_00158;LMNA_HUMAN_00270;LMNA_HUMAN_002 860 EKTYSAKLDNARQ wildtype peptide Prelamin-A/C 70 Q3BDU5_HUMAN_00316;Q5TCI8_HUMAN_00235;Q5TCJ4_HUMAN_00316;Q6UYC3_HUMAN_00 316;D6RAQ3_HUMAN_00217;E7EUI9_HUMAN_00204;LMNA_HUMAN_00316;LMNA_HUMAN_003 861 QKQLAAKEAKLRD wildtype peptide Prelamin-A/C 16 862 YGVAWEKYCQRVP wildtype peptide Lamin-B receptor 863 LLLNYAKKESDLN wildtype peptide Lamin-B1 864 LSRLQEKEELREL wildtype peptide Lamin-B1 LMNB2_HUMAN_00027;E9PBF6_HUMAN_00033 865 VSSFEEKMISDAI wildtype peptide Malate dehydrogenase, mitochondrial E9PDB2_HUMAN_00272;G3XAL0_HUMAN_00207 866 LAPEFSKVKTKTP wildtype peptide Male-specific lethal 1 homolog MSL1_HUMAN_00152;MSL1_HUMAN_00090 867 PKKDPVKIVRCHE wildtype peptide Malignant T-cell-amplified sequence 1 MCTS1_HUMAN_00039;MCTS1_HUMAN_00052 868 GQIMAVKRIRSTV wildtype peptide Dual specificity mitogen-activated protein kinase kinase 4 B4DH44_HUMAN_00108;MP2K4_HUMAN_00142 869 LQQIAAKQKREQM wildtype peptide Mastermind-like protein 1 Acetylome - Acetyltransferase Microarray page 25 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B3KM87_HUMAN_00135;A8MXP9_HUMAN_00473;D6RBK5_HUMAN_00071;D6REM6_HUMAN_00 870 RVHLSQKYKRIKK wildtype peptide Matrin-3 473;H0Y8T4_HUMAN_00233;MATR3_HUMAN_00185 871 WLKLNKKVTAQDV wildtype peptide Moesin 872 VNYFSIKNKKGSE wildtype peptide Moesin Q5JYA3_HUMAN_00079;Q5JYA4_HUMAN_00034;Q5JYA5_HUMAN_00033;H0Y327_HUMAN_001 873 TDINLGKLVRGDA wildtype peptide Monofunctional C1-tetrahydrofolate synthase, mitochondrial 49;C1TM_HUMAN_00189 SMAD3_HUMAN_00378;SMAD2_HUMAN_00420;SMAD1_HUMAN_00418;SMAD5_HUMAN_00418 B7Z9Q2_HUMAN_00273;F5GWU7_HUMAN_00418;F5H383_HUMAN_00183;H3BQ00_HUMAN_00 874 IRMSFVKGWGAEY wildtype peptide Mothers against decapentaplegic homolog 9 109;SMAD9_HUMAN_00383;SMAD3_HUMAN_00334;SMAD2_HUMAN_00390 875 AIESLVKKLKEKK wildtype peptide Mothers against decapentaplegic homolog 4 Q9BYG6_HUMAN_00045;E7EUB6_HUMAN_00045 B4DIQ0_HUMAN_00366;B4DSJ8_HUMAN_00335;Q5TCW7_HUMAN_00395;MCE1_HUMAN_0039 876 ISPRHEKMKTGLI wildtype peptide mRNA-capping enzyme 5;MCE1_HUMAN_00395;MCE1_HUMAN_00395 B0AZT5_HUMAN_00081;C9J5D1_HUMAN_00115;E7EQ69_HUMAN_00154;F8WB80_HUMAN_000 877 VLQKNLKVPSGQN wildtype peptide N-alpha-acetyltransferase 50 67;NAA50_HUMAN_00067 878 YMGLYQKRDRTQQ wildtype peptide NAD-dependent malic enzyme, mitochondrial 879 EIFQNEKRVALSP wildtype peptide NAD(P) transhydrogenase, mitochondrial D6RAI5_HUMAN_00070;D6RHU2_HUMAN_00070 880 YSNNITKLLKAIS wildtype peptide NAD(P) transhydrogenase, mitochondrial Isoform 2 of NADH dehydrogenase [ubiquinone] flavoprotein 3, 881 DITDPEKPHQPKK wildtype peptide mitochondrial F8VQS7_HUMAN_00043;F8VRD8_HUMAN_00043;H0YID5_HUMAN_00037;H0YIT1_HUMAN_0001 882 TLVGEDKYGNKYY wildtype peptide NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 9 B4DHP6_HUMAN_00373;A6NM69_HUMAN_00410;C9JC79_HUMAN_00430;E1B6W5_HUMAN_00 883 GEQFVKKIGGIFA wildtype peptide Non-specific lipid-transfer protein 047;H0YF61_HUMAN_00069;NLTP_HUMAN_00050 884 IERLQEKVESAQS wildtype peptide Nuclear cap-binding protein subunit 1 885 KLIAGNKPVSFLT wildtype peptide Nuclear factor related to kappa-B-binding protein NFRKB_HUMAN_01262;NFRKB_HUMAN_01236 886 LQQVQEKEVRAQK wildtype peptide Nuclear mitotic apparatus protein 1 887 EGFKFSKPIGDFK wildtype peptide Nuclear pore complex protein Nup153 Q4LE47_HUMAN_00934;F6QR24_HUMAN_00985 888 RPFAYHKLLKDAG wildtype peptide Nuclear pore complex protein Nup214 NU214_HUMAN_00143;NU214_HUMAN_00143;NU214_HUMAN_00143;NU214_HUMAN_00143 889 EKEMLEKIGRLEK wildtype peptide Nucleoprotein TPR 890 QLDFASKRYEMLQ wildtype peptide Nucleoprotein TPR NDKB_HUMAN_00012;Q32Q12_HUMAN_00037;E7ERL0_HUMAN_00037;C9K028_HUMAN_00037 891 RTFIAIKPDGVQR wildtype peptide Nucleoside diphosphate kinase A ;E5RHP0_HUMAN_00012;NDKA_HUMAN_00037;NDKB_HUMAN_00012 NDKB_HUMAN_00100;Q32Q12_HUMAN_00125;E7ERL0_HUMAN_00125;F6XY72_HUMAN_00025 892 TNPADSKPGTIRG wildtype peptide Nucleoside diphosphate kinase A ;NDK8_HUMAN_00085;NDKA_HUMAN_00125;NDKB_HUMAN_00100 893 KTTLIHKASEVLK wildtype peptide Cancer-related nucleoside-triphosphatase B3KNT8_HUMAN_00197;B3KV44_HUMAN_00129;B7Z4K9_HUMAN_00014;B7Z9C2_HUMAN_001 55;F5H4R6_HUMAN_00197;F8VUC3_HUMAN_00014;F8VUX1_HUMAN_00170;F8VV59_HUMAN_0 0156;F8VXI6_HUMAN_00203;F8VY35_HUMAN_00197;F8W0J6_HUMAN_00208;F8W118_HUMAN _00156;F8W543_HUMAN_00134;H0YH88_HUMAN_00137;H0YHC3_HUMAN_00158;H0YIV4_HUM 894 PILKHLKDIKVKF wildtype peptide Nucleosome assembly protein 1-like 1 AN_00191 895 KHNKMMKDCSAGK wildtype peptide Peroxisomal carnitine O-octanoyltransferase C9J3D7_HUMAN_00495;E7EQF2_HUMAN_00523 E7EWE5_HUMAN_00639;E9PB82_HUMAN_00645;F5HE57_HUMAN_00688;E7EPL9_HUMAN_004 896 GGNIGAKWTIDLK wildtype peptide Peroxisomal multifunctional enzyme type 2 01;E7ET17_HUMAN_00526;G5E9S2_HUMAN_00523 E7ER27_HUMAN_00140;E7EWE5_HUMAN_00116;E9PB82_HUMAN_00122;F5HE57_HUMAN_00 897 AWEHMKKQKYGRI wildtype peptide Peroxisomal multifunctional enzyme type 2 165 898 AADLPTKPTKISK wildtype peptide PEST proteolytic signal-containing nuclear protein D3DN52_HUMAN_00085;PCNP_HUMAN_00064 899 AAQINGKTESSSV wildtype peptide PH-interacting protein 900 SLQYSAKEHGMPE wildtype peptide PHD finger protein 20-like protein 1 901 YAGLLEKKWTSVI wildtype peptide Platelet-activating factor acetylhydrolase IB subunit alpha Acetylome - Acetyltransferase Microarray page 26 of 167

Sequence PEP_FLAG Protein name Uniprot IDs MACF1_HUMAN_00086;B4E2T3_HUMAN_00049;E9PIA2_HUMAN_00067;E9PKG0_HUMAN_0002 7;E9PLY5_HUMAN_00044;E9PMV1_HUMAN_00077;E9PS75_HUMAN_00049;F5GZL7_HUMAN_0 0086;F8W8Q1_HUMAN_00086;H3BPE1_HUMAN_00049;H3BQK9_HUMAN_00086;H7BZ03_HUMA N_00102;PLEC_HUMAN_00077;PLEC_HUMAN_00077;PLEC_HUMAN_00050;PLEC_HUMAN_000 50;PLEC_HUMAN_00054;PLEC_HUMAN_00018;PLEC_HUMAN_00028;PLEC_HUMAN_00036;MA 902 QKKTFTKWVNKHL wildtype peptide Plectin CF1_HUMAN_00086;MACF1_HUMAN_00051;MACF1_HUMAN_00086 903 RQERVEKGLKLFA wildtype peptide Plexin-A4 904 AGGVTGKGQDGIG wildtype peptide Poly [ADP-ribose] polymerase 1 905 MKLYEEKTGNAWH wildtype peptide Poly [ADP-ribose] polymerase 1 F5H5I8_HUMAN_00657;G3V2A0_HUMAN_00391;G3XAH6_HUMAN_00641;H0YJL4_HUMAN_0014 906 SGNAATKIPTPIV wildtype peptide Poly(A) polymerase alpha 2 B4DDY8_HUMAN_00419;B4DQ67_HUMAN_00272;C9JHI8_HUMAN_00330;C9JV49_HUMAN_0040 4;C9JW95_HUMAN_00384;E9PD60_HUMAN_00297;E9PG66_HUMAN_00370;F5HHF0_HUMAN_0 907 KAEMLYKNNPKLL wildtype peptide Probable histidine--tRNA ligase, mitochondrial 0283 908 PRPSKGKMMRCVR wildtype peptide Probable histone-lysine N-methyltransferase NSD2 A2A2T2_HUMAN_00129;NSD2_HUMAN_00129 909 KAETAAKHGEAQV wildtype peptide Phosphoglycerate mutase 1 910 HGGLINKKCYEMA wildtype peptide Profilin-1 911 KNPGYIKLRKIRA wildtype peptide Prohibitin-2 B4DP75_HUMAN_00212;F5GY37_HUMAN_00250 912 KYYLAPKIEDEEG wildtype peptide Proliferating cell nuclear antigen 913 IPNEHKKPAEVFR wildtype peptide Protein Jade-3 F2Z2B6_HUMAN_00039;F2Z3N8_HUMAN_00039 914 GEPWGAKKPRHDL wildtype peptide DBIRD complex subunit KIAA1967 E5RHJ4_HUMAN_00033;K1967_HUMAN_00215

915 KIKNWQKEAFHKQ wildtype peptide Protein kinase C and casein kinase substrate in neurons protein 2 B0QYG7_HUMAN_00117;B0QYG8_HUMAN_00117;PACN2_HUMAN_00117 916 SGPVITKLIFAKP wildtype peptide Protein lin-54 homolog D6REW4_HUMAN_00023;LIN54_HUMAN_00023 MGN2_HUMAN_00116;A6NEC0_HUMAN_00079;B1ARP8_HUMAN_00077;F5H6P7_HUMAN_0007 917 IDVNQSKDPEGLR wildtype peptide Protein mago nashi homolog 0 918 NKLRENKEFLEFR wildtype peptide Protein NipSnap homolog 2 C9J7B1_HUMAN_00008;C9K068_HUMAN_00008;H7C333_HUMAN_00056 919 ZMPEPAKFAPAPK wildtype peptide Putative histone H2B type 2-C 920 SVKSAEKEISLRF wildtype peptide Putative nucleoside diphosphate kinase Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 921 DYPSGKKRAGTDG wildtype peptide DHX15 922 KKASFQKLNGISK wildtype peptide Putative ribosomal RNA methyltransferase NOP2 Q3KQS4_HUMAN_00682;NOP2_HUMAN_00645 923 KFYHLAKETGYRS wildtype peptide Putative rRNA methyltransferase 3 F5GYJ8_HUMAN_00188;F5GYN4_HUMAN_00158;F5H3F0_HUMAN_00087;F5H6Q1_HUMAN_001 924 YLQRESKFFEHFI wildtype peptide Ubiquitin thioesterase OTUB1 97;OTUB1_HUMAN_00232 925 ASKTFGKAAGPSL wildtype peptide Replication protein A 70 kDa DNA-binding subunit Q5SYQ7_HUMAN_00091;Q5SYQ8_HUMAN_00091;Q5SYQ9_HUMAN_00091;E7ER57_HUMAN_00 926 RGRLLYKLADLIE wildtype peptide Retinal dehydrogenase 1 091;H0Y4S2_HUMAN_00105 927 GKKEGAKLECGGG wildtype peptide Retinal dehydrogenase 1 928 VKTVTVKISQKNS wildtype peptide Retinal dehydrogenase 1 929 DIGYIFKEKFAKA wildtype peptide Retinoblastoma-associated protein 930 PCKDREKHVLEAR wildtype peptide E3 ubiquitin-protein ligase RBBP6 H3BNY6_HUMAN_01404;RBBP6_HUMAN_01537;RBBP6_HUMAN_00731 931 VSLDFVKSGDYAL wildtype peptide Sarcosine dehydrogenase, mitochondrial B4DPI2_HUMAN_00716;Q5SYV2_HUMAN_00334 SAFB1_HUMAN_00423;B7Z2F6_HUMAN_00266;B7Z959_HUMAN_00173;A8MXT5_HUMAN_00424 ;C9JPX0_HUMAN_00320;F5GXS4_HUMAN_00175;F5GZU3_HUMAN_00253;F5H0H3_HUMAN_00 932 TRATDLKNLFSKY wildtype peptide Scaffold attachment factor B2 354;F5H1L1_HUMAN_00318 933 VYPATEKHLQKYL wildtype peptide Scavenger mRNA-decapping enzyme DcpS 934 ZZMEQSKVLIKEG wildtype peptide Novel protein Acetylome - Acetyltransferase Microarray page 27 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B4DNE4_HUMAN_00126;E7EPK1_HUMAN_00180;E7ES33_HUMAN_00180;G3V1Q4_HUMAN_00 128;H0Y3Y4_HUMAN_00159;H0YFF6_HUMAN_00167;F5GZE5_HUMAN_00180;SEPT7_HUMAN_0 935 LDIEFMKRLHEKV wildtype peptide Septin-7 0180 936 ERASGCKYLDYMQ wildtype peptide Serine beta-lactamase-like protein LACTB, mitochondrial B7Z5S1_HUMAN_01136;A9IYQ1_HUMAN_00090;E7ENA8_HUMAN_01136;E9PBP3_HUMAN_000 937 VLGAVNKPLSSAG wildtype peptide Sister chromatid cohesion protein PDS5 homolog B 94;PDS5B_HUMAN_01136 FNBP2_HUMAN_00230;SRGP1_HUMAN_00220;F5H5V9_HUMAN_00100;G5EA48_HUMAN_00180 ;H0Y2P8_HUMAN_00144;H0Y4C3_HUMAN_00090;SRGP3_HUMAN_00220;SRGP3_HUMAN_0022 938 SVKKIEKMKEKRQ wildtype peptide SLIT-ROBO Rho GTPase-activating protein 3 0;SRGP1_HUMAN_00220 939 DAKSNYKMMFVKS wildtype peptide Small acidic protein RSMN_HUMAN_00008;B3KVR1_HUMAN_00012;E7ERB2_HUMAN_00008;E7ENP4_HUMAN_0000 940 TVGKSSKMLQHID wildtype peptide Small nuclear ribonucleoprotein-associated proteins B and B 8;RSMB_HUMAN_00008;RSMB_HUMAN_00008 SUMO2_HUMAN_00042;B4DUW4_HUMAN_00041;A8MU27_HUMAN_00041;A8MUA9_HUMAN_00 941 RHTPLSKLMKAYC wildtype peptide Small ubiquitin-related modifier 3 041;H7BZT4_HUMAN_00042;SUMO2_HUMAN_00042 Q9HBD4_HUMAN_01033;F5H0X5_HUMAN_01097;SMCA4_HUMAN_01033;SMCA4_HUMAN_0103 942 KGKGGTKTLMNTI wildtype peptide Transcription activator BRG1 3;SMCA4_HUMAN_01033;SMCA4_HUMAN_01033 943 SKGFGGKYGIDKD wildtype peptide Src substrate cortactin H7C314_HUMAN_00180;SRC8_HUMAN_00198;SRC8_HUMAN_00198 944 SQQDYSKGFGGKY wildtype peptide Src substrate cortactin 945 ERSSYYKSLLSAE wildtype peptide Staphylococcal nuclease domain-containing protein 1 STMN2_HUMAN_00129;B7Z4N6_HUMAN_00118;E5RGX5_HUMAN_00118;G3V110_HUMAN_0012 946 ENNNFSKMAEEKL wildtype peptide Stathmin 9;STMN1_HUMAN_00095 947 REYLIEKLLTRTP wildtype peptide STE20/SPS1-related proline-alanine-rich protein kinase 948 PFCRFQKCLTVGM wildtype peptide Steroidogenic factor 1 B3KUK2_HUMAN_00022;B4E3K9_HUMAN_00068;F5GXZ9_HUMAN_00068;F5GYZ5_HUMAN_000 91;F5H3C5_HUMAN_00022;F5H4R2_HUMAN_00091;G5E9P6_HUMAN_00068;G8JLJ2_HUMAN_0 949 LNVTEEKYQEALA wildtype peptide Superoxide dismutase [Mn], mitochondrial 0022;SODM_HUMAN_00068 950 TCGIADKPMTQYQ wildtype peptide Survival of motor neuron-related-splicing factor 30 951 GKRRSQKEEDEQE wildtype peptide SWI/SNF complex subunit SMARCC1 SWI/SNF-related matrix-associated actin-dependent regulator of 952 ILNSAGKMDKMRL wildtype peptide chromatin subfamily A member 5 953 DFDRFSKHDIIGE wildtype peptide Synaptotagmin-1 SYT2_HUMAN_00234;H0YIH4_HUMAN_00139 954 ERAALAKALKMTD wildtype peptide T-cell leukemia homeobox protein 1 955 LVKSFIKWCNSGS wildtype peptide THO complex subunit 7 homolog 956 CFHQLMKDTTLNW wildtype peptide Thymidylate kinase H7BZ20_HUMAN_00165;H7C312_HUMAN_00127 957 ASFDKAKLKKTET wildtype peptide Thymosin beta-10 958 DMAEIEKFDKSKL wildtype peptide Thymosin beta-4 959 EKFDKSKLKKTET wildtype peptide Thymosin beta-4 960 RGFVPEKNFRVTA wildtype peptide Thyroid hormone receptor-associated protein 3 B3KSI4_HUMAN_00171;B4E022_HUMAN_00207;E7EPA7_HUMAN_00262;E9PFF2_HUMAN_0025 961 ITGVEDKESWHGK wildtype peptide Transketolase 4 962 FRLLNLKNDSLRK wildtype peptide Translin B7Z5D9_HUMAN_00153;E9PGT1_HUMAN_00182 963 LREKDPKYSALRQ wildtype peptide Transmembrane protein 205 E7ETY2_HUMAN_00600;E9PHK9_HUMAN_00600;TCOF_HUMAN_00523;TCOF_HUMAN_00600;T COF_HUMAN_00600;TCOF_HUMAN_00600;TCOF_HUMAN_00600;TCOF_HUMAN_00600;TCOF_ 964 PVAVQVKAEKPMD wildtype peptide Treacle protein HUMAN_00523 965 QTSPNPKYRGFFH wildtype peptide Tricarboxylate transport protein, mitochondrial 966 LYPAPLKIIDVVK wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 967 PALGYSKRVHLMN wildtype peptide Tyrosine--tRNA ligase, cytoplasmic 968 KKKVFEKLQADFK wildtype peptide Tyrosine--tRNA ligase, cytoplasmic 969 YDTTESKLRREFE wildtype peptide U1 small nuclear ribonucleoprotein 70 kDa RU17_HUMAN_00118;RU17_HUMAN_00118 Acetylome - Acetyltransferase Microarray page 28 of 167

Sequence PEP_FLAG Protein name Uniprot IDs C9JB80_HUMAN_00327;E7ET15_HUMAN_00759;H7C4V2_HUMAN_00080;SR140_HUMAN_00759 970 FKVAPSKWEAVDE wildtype peptide U2 snRNP-associated SURP motif-containing protein ;SR140_HUMAN_00351 971 SVDQAGKYSKTVA wildtype peptide U3 small nucleolar ribonucleoprotein protein MPP10 972 DKNNLVKYDKKTG wildtype peptide U5 small nuclear ribonucleoprotein 200 kDa helicase 973 DCLKLMKYLLEQL wildtype peptide Protein MB21D1 974 TPFILKKLDSIZZ wildtype peptide Mitochondrial import receptor subunit TOM5 homolog 975 GSKAKGKEIQPVS wildtype peptide Putative uncharacterized protein ENSP00000382131 976 KHPSDEKYSGLTA wildtype peptide Uncharacterized protein KIAA1143 B3KM87_HUMAN_00186;A8MXP9_HUMAN_00524;D6REM6_HUMAN_00524;H0Y8T4_HUMAN_00 977 EPYGKIKNYILMR wildtype peptide Matrin-3 284;MATR3_HUMAN_00236 978 YMDPTGKTRRNKE wildtype peptide ADP-sugar pyrophosphatase 979 NTRTNEKVELQEL wildtype peptide Vimentin B0YJC4_HUMAN_00104;F5H288_HUMAN_00091 980 DEIQNMKEEMARH wildtype peptide Vimentin B0YJC4_HUMAN_00373;B0YJC5_HUMAN_00191;F5H288_HUMAN_00360 Q5JVS8_HUMAN_00061;B0YJC4_HUMAN_00235;B0YJC5_HUMAN_00053;F5H288_HUMAN_0022 981 EEIAFLKKLHEEE wildtype peptide Vimentin 2 982 AGEALSKPKSETV wildtype peptide Visual system homeobox 2 983 RFGIAAKYQIDPD wildtype peptide Voltage-dependent anion-selective channel protein 1 Q5JSD1_HUMAN_00039;Q5JSD2_HUMAN_00039;A2A3S1_HUMAN_00054;VDAC2_HUMAN_0005 984 FGFGLVKLDVKTK wildtype peptide Voltage-dependent anion-selective channel protein 2 4;VDAC2_HUMAN_00028

985 GKSLDGKAIKVEQ wildtype peptide RNA-binding motif protein, X chromosome RMXL1_HUMAN_00077;H0Y6E7_HUMAN_00079;H3BT71_HUMAN_00077;RBMX_HUMAN_00064 986 RALAFAKAGPRLW wildtype peptide cDNA FLJ43087 fis, clone BRTHA3019105 987 VFVAGIKEDTEEH wildtype peptide NONE 988 IRPDGEKKVYVZZ wildtype peptide NONE 989 EKIPKGKKGKADA wildtype peptide Protein HMGN2P42 Q68DV2_HUMAN_00176;E9PHY5_HUMAN_00176;E9PII3_HUMAN_00176;E9PK52_HUMAN_0017 990 SKEREEKVKETQE wildtype peptide Band 4.1-like protein 2 6;E9PPD9_HUMAN_00176;E41L2_HUMAN_00176

991 AQHDVYKGLLPEE wildtype peptide Electron transfer flavoprotein subunit alpha, mitochondrial H0YKF0_HUMAN_00085;H0YL12_HUMAN_00023;H0YLU7_HUMAN_00085;ETFA_HUMAN_00036 A6NGW8_HUMAN_00163;E9PEM9_HUMAN_00144;E9PHN6_HUMAN_00144;F6XZQ7_HUMAN_0 992 YSQFLGKQPWFLG wildtype peptide Glutathione S-transferase Mu 2 0144;E9PGV1_HUMAN_00040;E9PHN7_HUMAN_00142;E9PLF1_HUMAN_00135 993 VRGKAGKGLGKGG wildtype peptide Histone H4-like protein type G 994 VTALWGKVNVDEV wildtype peptide Hemoglobin subunit beta 995 PEKSQGKVLQATV wildtype peptide 10 kDa heat shock protein, mitochondrial 996 EVYHTLKGVIKDK wildtype peptide Gamma-enolase 997 AQTRYIKTSGNAT wildtype peptide E3 ubiquitin-protein ligase RING2 A6NML8_HUMAN_00130;C9J6U3_HUMAN_00119;F5H7I1_HUMAN_00130;DIAP2_HUMAN_00130 998 KAPLRNKDFTTKR wildtype peptide Protein diaphanous homolog 2 DIAP2_HUMAN_00119 999 PLLSTPKRERMVL wildtype peptide Kinesin-like protein KIF22 B7Z265_HUMAN_00397;H3BRB3_HUMAN_00397 1000 MSDRPGKRCAAEG wildtype peptide Low-density lipoprotein receptor-related protein 2 1001 LQGNNKKAPLNZZ wildtype peptide Host cell factor 2 1002 RLEVGMKNNVKWE wildtype peptide 39S ribosomal protein L9, mitochondrial

1003 EPQLRPKKMDGAS wildtype peptide Uncharacterized protein C1orf49 Q5T0J8_HUMAN_00141;CA049_HUMAN_00149;CA049_HUMAN_00141;CA049_HUMAN_00065 H2A2C_HUMAN_00014;H2A2A_HUMAN_00014;H2A3_HUMAN_00014;H2A2B_HUMAN_00014;H2 1004 GGKARAKAKSRSS wildtype peptide Histone H2A.x A1C_HUMAN_00014 1005 RASGGSKAVQPGR wildtype peptide cDNA FLJ31668 fis, clone NT2RI2004916 1006 PEPAVFKATLDRS wildtype peptide Thiosulfate sulfurtransferase 1007 WAAKREKQGKPRL wildtype peptide BBX protein 1008 RFCAEIKSPKYGE wildtype peptide Selenide, water dikinase 1 B4DWK0_HUMAN_00274;Q5T5U9_HUMAN_00270 Acetylome - Acetyltransferase Microarray page 29 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1009 GTSTSEKPNSMDT wildtype peptide Ras GTPase-activating protein nGAP B1AKC7_HUMAN_00155;F8W755_HUMAN_00173 1010 GNPFDSKTEQGPQ wildtype peptide Aldehyde dehydrogenase, mitochondrial E7EUE5_HUMAN_00308;F8VXI5_HUMAN_00279;F8W0A9_HUMAN_00215 1011 SKATGKKISSVLQ wildtype peptide Rhotekin-2 1012 RAPGLEKRVKREP wildtype peptide Zinc finger protein 541 H7BXG6_HUMAN_00555;ZN541_HUMAN_00964;ZN541_HUMAN_01222 1013 TGVKPYKCTECGK wildtype peptide Zinc finger protein 100 C9J6N5_HUMAN_00100;C9JQ40_HUMAN_00100;C9JW51_HUMAN_00100;F107B_HUMAN_0027 1014 LELEKQKLQEEQE wildtype peptide Protein FAM107B 5 Q5TEV0_HUMAN_00106;ARHGJ_HUMAN_00423;H0Y4D8_HUMAN_00112;ARHGJ_HUMAN_0042 1015 KQWLFSKLPEVKS wildtype peptide Rho guanine nucleotide exchange factor 19 3 1016 YPEGQVKSQMKCV wildtype peptide WD repeat-containing protein 93 WDR93_HUMAN_00482;WDR93_HUMAN_00454 1017 EDLTRLKETIDNN wildtype peptide Eukaryotic translation initiation factor 3 subunit E E5RGA2_HUMAN_00100;E5RHS5_HUMAN_00066;H0YAW4_HUMAN_00017

1018 AIQERAKEAVTKS wildtype peptide Nesprin-1 E7EQI5_HUMAN_03481;E9PEL9_HUMAN_03488;SYNE1_HUMAN_03488;SYNE1_HUMAN_03481 1019 IRSSVEKENQKSK wildtype peptide Peptidyl-prolyl cis-trans isomerase G 1020 VTKEEYKDILRKA wildtype peptide PHD and RING finger domain-containing protein 1 E9PJ24_HUMAN_01589;F8WEF5_HUMAN_01591;PHRF1_HUMAN_01592 1021 RIKNGEKPFECTA wildtype peptide Zinc finger protein 182 B7Z9C6_HUMAN_00782;F5GZ35_HUMAN_00750;F5GZJ6_HUMAN_00830;H0Y507_HUMAN_0084 1022 LDTVPAKGRQNEG wildtype peptide SH3 and PX domain-containing protein 2A 2;SPD2A_HUMAN_00722;SPD2A_HUMAN_00887 1023 REQSTRKENIQTG wildtype peptide Androglobin F8W7W4_HUMAN_00232;H0Y334_HUMAN_00467;ADGB_HUMAN_00454 C9JCC6_HUMAN_00136;E9PMW2_HUMAN_00085;E9PNC7_HUMAN_00090;E9PQX9_HUMAN_0 1024 GMGTKSKDKKLSG wildtype peptide Dr1-associated corepressor 0109;NC2A_HUMAN_00135 1025 HYERQMKTYIPPK wildtype peptide Putative high mobility group protein B1-like 1 1026 SGQYERKAERGAG wildtype peptide Sorbin and SH3 domain-containing protein 1 SRBS1_HUMAN_01084;SRBS1_HUMAN_00989 1027 NNCLELKKKNHKE wildtype peptide Potassium-transporting ATPase alpha chain 2 B7Z227_HUMAN_00241;A6NCU2_HUMAN_00224;MS3L2_HUMAN_00315;MS3L1_HUMAN_00331 1028 LFLHLEKKTPVHS wildtype peptide Male-specific lethal 3 homolog MS3L1_HUMAN_00378 A4QN19_HUMAN_01494;C9JVR0_HUMAN_00462;H0Y5S1_HUMAN_00234;SC16A_HUMAN_0192 1029 ETKEPKKGESWFF wildtype peptide Protein transport protein Sec16A 6;SC16A_HUMAN_01926;SC16A_HUMAN_01926;SC16A_HUMAN_01926 1030 HDVTQSKLFSLKT wildtype peptide Uncharacterized protein C18orf63 1031 EMRLKEKGKAEGR wildtype peptide Dynein intermediate chain 2, axonemal 1032 IQWIKEKEPVLTS wildtype peptide Spectrin alpha chain, erythrocyte D3DVD8_HUMAN_00283;SPTA1_HUMAN_00283 1033 ENIAKAKRLKKDZ wildtype peptide UPF0542 protein C5orf43 1034 AEAGGGKKGGKKK wildtype peptide Myosin-1 B7Z5B0_HUMAN_00219;Q6N077_HUMAN_00204;E7EMV7_HUMAN_00204;E7EPY1_HUMAN_002 57;E7ERB0_HUMAN_00214;E7ET96_HUMAN_00257;E7EW15_HUMAN_00204;F5GYD7_HUMAN_ 1035 LMSNGNKEGASGR wildtype peptide TNFAIP3-interacting protein 1 00214;F5H4X3_HUMAN_00214;TNIP1_HUMAN_00257 1036 DSRNLKKASKNDD wildtype peptide Cylicin-1 1037 NVIYVDKENNKAK wildtype peptide Protein fantom H3BS47_HUMAN_01165;H3BV03_HUMAN_01177;FTM_HUMAN_01131 1038 KLKELEKDNRDLT wildtype peptide Protein Daple Q5JR01_HUMAN_00079;Q6IQ15_HUMAN_00079;F8W6I0_HUMAN_00079;A6PW80_HUMAN_000 1039 IDISLWKFETSKY wildtype peptide Elongation factor 1-alpha 1 79;EF1A3_HUMAN_00079 1040 KRKDYLKQHMKTH wildtype peptide Transcription factor IIIA 1041 QNPCDDKRHKDIW wildtype peptide Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 B4DE98_HUMAN_00111;Q2KHM8_HUMAN_00200;NDST4_HUMAN_00579 1042 DEVAQSKGSVSAG wildtype peptide Ankyrin repeat domain-containing protein 6 ANKR6_HUMAN_00299;ANKR6_HUMAN_00240 1043 LRDKGKKAESTES wildtype peptide Regulator of nonsense transcripts 3B DAAM2_HUMAN_00182;G5EA45_HUMAN_00182;DAAM1_HUMAN_00186;DAAM1_HUMAN_0018 1044 SLIGCIKALMNNS wildtype peptide Disheveled-associated activator of morphogenesis 1 6 1045 KNRLLKKDASSSP wildtype peptide Transducin-like enhancer protein 1 1046 RYRCSKKERVYVY wildtype peptide Beta-defensin 123 1047 PVLSCKKRRLVRP wildtype peptide KAT8 regulatory NSL complex subunit 1 Acetylome - Acetyltransferase Microarray page 30 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1048 KELEDLKRTFKEG wildtype peptide C10orf118 protein (Fragment) CJ118_HUMAN_00488;F6VCB7_HUMAN_00086;H0Y7V5_HUMAN_00117 1049 ATEERGKPSEQLT wildtype peptide Genetic suppressor element 1 H0Y613_HUMAN_00234;GSE1_HUMAN_00323;GSE1_HUMAN_00354 1050 YLLLGRKTEPDEH wildtype peptide MAP/microtubule affinity-regulating kinase 4 (Fragment) Q5SZW8_HUMAN_00045;Q5SZX6_HUMAN_00045;Q5SZX9_HUMAN_00021;E9PAQ6_HUMAN_00 1051 KRESGRKVQSGNI wildtype peptide T-complex protein 1 subunit gamma 021;E9PRC8_HUMAN_00021;E9PM09_HUMAN_00021;TCPG_HUMAN_00021 1052 KVPPEQKRKAGST wildtype peptide RNA-binding protein 28 CE57L_HUMAN_00091;E5RFY4_HUMAN_00091;E5RG21_HUMAN_00091;E5RG82_HUMAN_0009 1;E5RHF8_HUMAN_00091;E5RI49_HUMAN_00091;E5RIV2_HUMAN_00091;E5RJH1_HUMAN_000 1053 REAAQYKKALENE wildtype peptide C6orf182 protein 91;E5RJP9_HUMAN_00091;G3V140_HUMAN_00094;G5E992_HUMAN_00091 E7EVA7_HUMAN_01553;E9PGY5_HUMAN_01576;F8VU38_HUMAN_01406;F8VV34_HUMAN_015 53;F8VZP8_HUMAN_01406;F8W1C2_HUMAN_01406;MDC1_HUMAN_01576;MDC1_HUMAN_015 1054 QKTVIIKEEEEDT wildtype peptide Mediator of DNA damage checkpoint protein 1 53;MDC1_HUMAN_00817 E9PFI7_HUMAN_00351;F5H3X8_HUMAN_00125;G5E9Z7_HUMAN_00125;G8JLJ9_HUMAN_0012 1055 PCPAAVKSEECLT wildtype peptide Poly [ADP-ribose] polymerase 8 5;PARP8_HUMAN_00372 1056 AEILEEKEVEVAK wildtype peptide Bicaudal D-related protein 2 1057 MQNEITKMSIIDK wildtype peptide Sacsin 1058 SNASTTKYPQSPT wildtype peptide Glutamate [NMDA] receptor subunit epsilon-2 1059 EILEILKKGKAFV wildtype peptide UPF0489 protein C5orf22 1060 GIHSGEKPYKCNE wildtype peptide Zinc finger protein 160 1061 QCNQCGKTFWEKS wildtype peptide Zinc finger protein 33B E7ETX9_HUMAN_00364;E7EVK5_HUMAN_00330 1062 TKLSPEKKPTRGR wildtype peptide Protein odd-skipped-related 1 1063 AESPDMKKEQDPP wildtype peptide ETS homologous factor E9PSB2_HUMAN_00210;EHF_HUMAN_00165 1064 EVQPPFKPASGKP wildtype peptide Ribosomal protein S6 kinase alpha-6 1065 KFGMSKKEMEQVD wildtype peptide Small G protein signaling modulator 2 SGSM2_HUMAN_00635;SGSM2_HUMAN_00590 G3V2D9_HUMAN_00008;G3V3C7_HUMAN_00008;G3V3M6_HUMAN_00008;G3V5D9_HUMAN_00 1066 ZZZZZPKRGKKGA wildtype peptide DNA-(apurinic or apyrimidinic site) lyase 008;G3V5Q1_HUMAN_00008 B7Z5S1_HUMAN_01103;A9IYQ1_HUMAN_00057;E7ENA8_HUMAN_01103;E9PBP3_HUMAN_000 1067 FFTQPDKNFSNTK wildtype peptide Sister chromatid cohesion protein PDS5 homolog B 61;PDS5B_HUMAN_01103 1068 GLKNPEKSFPVNS wildtype peptide Coatomer subunit delta B0YIW6_HUMAN_00392;E9PEU4_HUMAN_00263 1069 EQIGAAKEAKKKY wildtype peptide Rho GTPase-activating protein 26 F8W8N5_HUMAN_00100;RHG26_HUMAN_00128 1070 LIVNLLKSDNKEV wildtype peptide Armadillo repeat-containing protein 4 ARMC4_HUMAN_00891;F5H5Q9_HUMAN_00583 1071 EVRGADKVNTFSA wildtype peptide ATPase ASNA1 1072 ESSLGAKHRLTEE wildtype peptide Nuclear speckle splicing regulatory protein 1 1073 TGGFGAKKRKGSS wildtype peptide Coiled-coil domain-containing protein 86 1074 KTGKKGKGSKGCK wildtype peptide C-C motif chemokine 21 1075 PWKANSKQPAFTI wildtype peptide Cyclin-A2 1076 ZZZAAVKTLNPKA wildtype peptide T-complex protein 1 subunit zeta 1077 PHSHTLKGRRLVF wildtype peptide Cell division control protein 6 homolog 1078 KTELIQKAKLAEQ wildtype peptide 14-3-3 protein theta B0AZS6_HUMAN_00038;E7EX29_HUMAN_00115;E7ESK7_HUMAN_00115;E7EX24_HUMAN_000 1079 ASQAESKVFYLKM wildtype peptide 14-3-3 protein zeta/delta 40 1080 CIFFEPKILYRAA wildtype peptide 2-oxoisovalerate dehydrogenase subunit beta, mitochondria 1081 ERHKIVKEIHEQL wildtype peptide 2-5-oligoadenylate synthase 2 1082 LAKDFEKAYKTVI wildtype peptide 26S protease regulatory subunit 6B H0YJC0_HUMAN_00020;H0YJD2_HUMAN_00017;H0YJE9_HUMAN_00024;H0YJS8_HUMAN_000 1083 KKLLEHKEIDGRL wildtype peptide 26S protease regulatory subunit 10B 21;H0YJT1_HUMAN_00030;H0YJY8_HUMAN_00026 1084 LPKLYVKLHYCVS wildtype peptide 40S ribosomal protein S26 F8VZW7_HUMAN_00070;RS26L_HUMAN_00070 1085 KVDENGKISRLRR wildtype peptide Ubiquitin-40S ribosomal protein S27a Acetylome - Acetyltransferase Microarray page 31 of 167

Sequence PEP_FLAG Protein name Uniprot IDs UBC_HUMAN_00048;RS27A_HUMAN_00048;RL40_HUMAN_00048;B2RDW1_HUMAN_00048;B4 DV12_HUMAN_00048;Q96C32_HUMAN_00048;F5GXK7_HUMAN_00048;F5GYU3_HUMAN_00048 ;F5GYX6_HUMAN_00048;F5GZ39_HUMAN_00048;F5H041_HUMAN_00048;F5H265_HUMAN_000 48;F5H2Z3_HUMAN_00048;F5H388_HUMAN_00048;F5H4D8_HUMAN_00048;F5H6Q2_HUMAN_0 1086 RLIFAGKQLEDGR wildtype peptide Polyubiquitin-B 0048;F5H747_HUMAN_00048;F5H7K6_HUMAN_00048;F5H7Y5_HUMAN_00048 1087 GDETGAKVERADG wildtype peptide 40S ribosomal protein S3a D6RAT0_HUMAN_00212;D6R9B6_HUMAN_00130;H0Y9Y4_HUMAN_00193 1088 ITPEEAKYKLCKV wildtype peptide 40S ribosomal protein S4, X isoform 1089 VKEKYAKYLPHSA wildtype peptide 40S ribosomal protein S5 1090 LADIMAKRNQKPE wildtype peptide 60S ribosomal protein L24 C9JNW5_HUMAN_00093;C9JXB8_HUMAN_00093 1091 RREAKVKFEERYK wildtype peptide 60S ribosomal protein L27 1092 HPGYFGKVGMKHY wildtype peptide 60S ribosomal protein L27a 1093 VKPKEVKPKIPKG wildtype peptide 60S ribosomal protein L29 1094 LVMKSGKYVLGYK wildtype peptide 60S ribosomal protein L30 E5RI99_HUMAN_00026;E5RJH3_HUMAN_00026 1095 KKEELLKQLDDLK wildtype peptide 60S ribosomal protein L35 F2Z388_HUMAN_00019;H0Y3A0_HUMAN_00019 ACTA_HUMAN_00193;ACTG_HUMAN_00191;ACTH_HUMAN_00192;ACTC_HUMAN_00193;ACTS _HUMAN_00193;ACTBL_HUMAN_00192;B4DUI8_HUMAN_00148;B4DW52_HUMAN_00163;B4E33 5_HUMAN_00167;Q5T8M7_HUMAN_00158;E9PG30_HUMAN_00149;F5GYT4_HUMAN_00110;F5 H0N0_HUMAN_00149;F5H1C1_HUMAN_00158;POTEI_HUMAN_00891;POTEJ_HUMAN_00854;A 1096 LTDYLMKILTERG wildtype peptide Actin, cytoplasmic 1 CTBM_HUMAN_00191 1097 NMFQIGKMRYVSV wildtype peptide Activated RNA polymerase II transcriptional coactivator p15 1098 KNSSYGKVEGFWS wildtype peptide Activity-dependent neuroprotector homeobox protein B7TY16_HUMAN_00676;H0YJ11_HUMAN_00116;H0YJW3_HUMAN_00062;H7C5W8_HUMAN_00 1099 HLRQYEKSIVNYK wildtype peptide Alpha-actinin-1 205;H9KV75_HUMAN_00611;ACTN1_HUMAN_00676;ACTN1_HUMAN_00676 1100 SQQILEKRAYICA wildtype peptide Acyl-CoA dehydrogenase family member 9, mitochondria F8WAN8_HUMAN_00475;H0Y8Z9_HUMAN_00371 1101 VRHLKTKPSDEEM wildtype peptide Acyl-CoA-binding protein ACBP_HUMAN_00036;ACBP_HUMAN_00020;ACBP_HUMAN_00061;ACBP_HUMAN_00080 AK1C1_HUMAN_00031;B4DK69_HUMAN_00031;B4DKR9_HUMAN_00031;B5ME26_HUMAN_0001 1102 APAEVPKSKALEA wildtype peptide Aldo-keto reductase family 1 member C2 6 AK1C3_HUMAN_00270;AK1C2_HUMAN_00270;AK1C1_HUMAN_00270;B4DK69_HUMAN_00244; 1103 GVVVLAKSYNEQR wildtype peptide Aldo-keto reductase family 1 member C4 H0Y804_HUMAN_00237 1104 WCTYHEKGLVKGA wildtype peptide Aldose reductase 1105 DFLHDLKETNISY wildtype peptide Alkyldihydroxyacetonephosphate synthase, peroxisoma 1106 KINNVNKALDFIA wildtype peptide Alpha-actinin-4 1107 EYDKLRKDDPVTN wildtype peptide Alpha-actinin-4 B7Z582_HUMAN_00180;A6NN80_HUMAN_00306;E5RK69_HUMAN_00099;E9PGK1_HUMAN_002 1108 SLYSMIKNDTSGE wildtype peptide Annexin A6 74 B7Z582_HUMAN_00481;A6NN80_HUMAN_00601;E5RK69_HUMAN_00394;E7EMC6_HUMAN_002 1109 PLFFADKLYKSMK wildtype peptide Annexin A6 64;E9PGK1_HUMAN_00575 1110 FKTSYGKDLIKDL wildtype peptide Annexin A7 B4DHY4_HUMAN_00179;B4DT77_HUMAN_00081;ANXA7_HUMAN_00211 1111 QTQDHAKAPKSEK wildtype peptide Antigen KI-67 F5H4V4_HUMAN_00992;KI67_HUMAN_00633 AP2A1_HUMAN_00035;C9J1S3_HUMAN_00035;E7ESQ4_HUMAN_00035;E7EVC3_HUMAN_0003 5;E9PJJ7_HUMAN_00035;E9PPY8_HUMAN_00029;E9PR62_HUMAN_00035;H0YDE9_HUMAN_00 041;H0YEG0_HUMAN_00025;AP2A2_HUMAN_00035;AP2A2_HUMAN_00035;AP2A1_HUMAN_00 1112 EIKRINKELANIR wildtype peptide AP-2 complex subunit alpha-2 035 1113 WGETWEKAKTMCE wildtype peptide Probable methylthioribulose-1-phosphate dehydratase 1114 KKFNALKVPVPED wildtype peptide ATP synthase subunit d, mitochondrial 1115 RIVEYEKEMEKMK wildtype peptide ATP synthase subunit d, mitochondrial 1116 VDDFEKKFNALKV wildtype peptide ATP synthase subunit d, mitochondrial 1117 AQTGSFKQLTVKE wildtype peptide ATP synthase subunit g, mitochondrial 1118 SIAKQMKSEVATL wildtype peptide ATP synthase subunit gamma, mitochondrial B4DL14_HUMAN_00068;ATPG_HUMAN_00115 1119 KLEQVEKELLRVA wildtype peptide ATP synthase subunit O, mitochondrial H7C086_HUMAN_00060;H7C0C1_HUMAN_00009 Acetylome - Acetyltransferase Microarray page 32 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1120 ZZMLFDKLITNTA wildtype peptide ATPase family AAA domain-containing protein 2 ATD3A_HUMAN_00183;Q5SV14_HUMAN_00089;Q5SV15_HUMAN_00017;G3V1I6_HUMAN_0005 6;H0Y2W2_HUMAN_00121;ATD3B_HUMAN_00017;ATD3B_HUMAN_00089;ATD3A_HUMAN_0013 1121 RAQYQDKLARQRY wildtype peptide ATPase family AAA domain-containing protein 3B 5 1122 EIVHHKKEIERLQ wildtype peptide ATPase inhibitor, mitochondrial B5ME99_HUMAN_00036;C9K0G3_HUMAN_00036;E9PNR0_HUMAN_00036;BCL9L_HUMAN_0003 1123 CPPAPAKPMHPEN wildtype peptide B-cell CLL/lymphoma 9-like protein 1;BCL9L_HUMAN_00036;BCL9L_HUMAN_00036 B5ME99_HUMAN_00112;C9K0G3_HUMAN_00112;E9PKJ9_HUMAN_00075;E9PNR0_HUMAN_001 1124 SLKGKVKRDRSVS wildtype peptide B-cell CLL/lymphoma 9-like protein 12;BCL9L_HUMAN_00107;BCL9L_HUMAN_00112;BCL9L_HUMAN_00112 1125 QNHSILKIEKVLK wildtype peptide BAG family molecular chaperone regulator 5 1126 MKAAKEKLKYWQR wildtype peptide Bromodomain-containing protein 1 F5H6M9_HUMAN_00214;BRD1_HUMAN_00521 B5MCW3_HUMAN_00481;F8W820_HUMAN_00440;H0Y2L9_HUMAN_00375;H0YAH7_HUMAN_00 133;H7C127_HUMAN_00510;H7C128_HUMAN_00475;H7C179_HUMAN_00479;BRD8_HUMAN_00 1127 APEMTVKQERLDF wildtype peptide Bromodomain-containing protein 8 554;BRD8_HUMAN_00375;BRD8_HUMAN_00484 1128 NLYINVKLKAAEE wildtype peptide C-1-tetrahydrofolate synthase, cytoplasmic F5H2F4_HUMAN_00112;G3V2B8_HUMAN_00056 1129 GGDVRDKWDQYKG wildtype peptide Calcium homeostasis endoplasmic reticulum protein 1130 FRRIISKEGIPGL wildtype peptide Calcium-binding mitochondrial carrier protein SCaMC-1 1131 VKVLLEKATRKRV wildtype peptide Calcyclin-binding protein B2ZWH1_HUMAN_00019;CYBP_HUMAN_00019 1132 IGNSYFKEEKYKD wildtype peptide Stress-induced-phosphoprotein 1 F5H0T1_HUMAN_00288;G3XAD8_HUMAN_00359 1133 DLALEEKNKGNEC wildtype peptide Stress-induced-phosphoprotein 1 F5H0T1_HUMAN_00340;G3XAD8_HUMAN_00411 1134 YTINNLKFARHVE wildtype peptide Hydroxyacylglutathione hydrolase, mitochondria H3BPK3_HUMAN_00160;H3BPQ4_HUMAN_00181;GLO2_HUMAN_00181 1135 LPPRNIKPPFDLK wildtype peptide FYN-binding protein B4DLN2_HUMAN_00435;F5H8I8_HUMAN_00425;FYB_HUMAN_00425 1136 SQRDWGKGMACVG wildtype peptide E3 ubiquitin-protein ligase UHRF1 B5ME40_HUMAN_00014;F5GXG0_HUMAN_00399 AK1C3_HUMAN_00209;AK1C2_HUMAN_00209;AK1C1_HUMAN_00209;B4DK69_HUMAN_00183; 1137 LDFCKSKDIVLVA wildtype peptide Aldo-keto reductase family 1 member C4 B5ME26_HUMAN_00150;H0Y804_HUMAN_00176 1138 GQLPLVKPYLRSV wildtype peptide Clathrin heavy chain 2 1139 MREEFDKIGMRRT wildtype peptide Cleavage and polyadenylation specificity factor subunit 5 Q5HYH5_HUMAN_00073;H3BND3_HUMAN_00007;H3BV41_HUMAN_00007 1140 LEEDFIKSELKKA wildtype peptide Coactosin-like protein 1141 LRISDDKYGRIRL wildtype peptide Coatomer subunit delta B0YIW6_HUMAN_00350;E9PEU4_HUMAN_00221 E9PK25_HUMAN_00170;E9PP50_HUMAN_00132;E9PQB7_HUMAN_00115;G3V1A4_HUMAN_001 1142 KKLTGIKHELQAN wildtype peptide Cofilin-1 15 DEST_HUMAN_00121;COF2_HUMAN_00121;E9PK25_HUMAN_00159;E9PP50_HUMAN_00121;E 9PQB7_HUMAN_00104;F6RFD5_HUMAN_00121;G3V1A4_HUMAN_00104;G3V5P4_HUMAN_0010 1143 MIYASSKDAIKKK wildtype peptide Cofilin-1 4;DEST_HUMAN_00104 1144 KHQILPKEQWTKY wildtype peptide Cytochrome b-c1 complex subunit 7 B7Z2R2_HUMAN_00078;E5RHG9_HUMAN_00046;E5RJU0_HUMAN_00078 Q86WV2_HUMAN_00053;H3BN72_HUMAN_00053;H3BNV9_HUMAN_00053;H3BPG0_HUMAN_0 1145 PEVAHVKHLSASQ wildtype peptide Cytochrome c oxidase subunit 4 isoform 1, mitochondrial 0015

1146 LQKFFQKADGVPV wildtype peptide Cytochrome c oxidase subunit 7A-related protein, mitochondrial 1147 LSSQLLKVLGTRK wildtype peptide Cytoplasmic dynein 1 heavy chain 1 1148 SFDSEFKLACKVD wildtype peptide Cytoplasmic dynein 1 heavy chain 1 E7ER31_HUMAN_00048;E9PQH5_HUMAN_00048;CKAP5_HUMAN_00048;CKAP5_HUMAN_0004 1149 KSPEWSKFLGLIK wildtype peptide Cytoskeleton-associated protein 5 8 B4DL39_HUMAN_00303;B4DSB9_HUMAN_00341;B4E2Z2_HUMAN_00489;E9PHA6_HUMAN_005 1150 VKFTNSKLTSLNE wildtype peptide DNA mismatch repair protein Msh2 55 1151 GLLAFAKRRNCCI wildtype peptide DNA polymerase delta catalytic subunit 1152 GVQGLWKLLECSG wildtype peptide DNA repair protein complementing XP-G cells Q9HD60_HUMAN_00008;F2Z2A1_HUMAN_00008 1153 HGHNVFKERISDM wildtype peptide DNA replication licensing factor MCM2 F5H1E9_HUMAN_00197;F5H3V0_HUMAN_00120;H0Y8E6_HUMAN_00079 1154 HIKSFDKNLYRQL wildtype peptide DNA replication licensing factor MCM4 E7EM48_HUMAN_00180;E5RFJ8_HUMAN_00170 1155 SEHSIIKDFTKQK wildtype peptide DNA replication licensing factor MCM5 Acetylome - Acetyltransferase Microarray page 33 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1156 RLCELEKLRQDFE wildtype peptide E3 ubiquitin-protein ligase BRE1A E7EVU8_HUMAN_01840;E9PD66_HUMAN_01840;H0Y5W0_HUMAN_00874;HUWE1_HUMAN_01 1157 LRHTMEKVVRSAA wildtype peptide E3 ubiquitin-protein ligase HUWE1 840;HUWE1_HUMAN_01831 1158 KTSLSFKSDQVKV wildtype peptide E3 ubiquitin-protein ligase TRIM33 E7EN20_HUMAN_00401;H0Y612_HUMAN_00530;TRI33_HUMAN_00769 1159 EKRVNSKFDTIYQ wildtype peptide E3 ubiquitin/ISG15 ligase TRIM25 1160 QRKAAFKELQSTF wildtype peptide EF-hand domain-containing protein D2 Electron transfer flavoprotein-ubiquinone oxidoreductase, 1161 FGILTEKYRIPVP wildtype peptide mitochondrial 1162 DKKKLVKAFKKKF wildtype peptide Eukaryotic translation initiation factor 1b 1163 SLCRLYKFIEQKG wildtype peptide Eukaryotic translation initiation factor 2-alpha kinase 4 H0YME5_HUMAN_01037;E2AK4_HUMAN_01231 B4DV79_HUMAN_00288;C9JQN7_HUMAN_00092;F8W8C8_HUMAN_00364;EIF3B_HUMAN_0036 1164 ALWGGEKFKQIQR wildtype peptide Eukaryotic translation initiation factor 3 subunit B 4 1165 KRRQVLKDLVKVI wildtype peptide Eukaryotic translation initiation factor 3 subunit E E5RGA2_HUMAN_00182;E5RHS5_HUMAN_00148 B0QY90_HUMAN_00451;B3KNG0_HUMAN_00282;B0QY89_HUMAN_00592;G8JLH4_HUMAN_005 1166 FIRQIHKFEELNR wildtype peptide Eukaryotic translation initiation factor 3 subunit L 01 1167 KLASYVKFYQNNK wildtype peptide Eukaryotic translation initiation factor 3 subunit M B4E2Q4_HUMAN_00122;H0YCQ8_HUMAN_00095 1168 EQYQILKENYGQK wildtype peptide Farnesyl pyrophosphate synthase 1169 LAQERTKFDLLKE wildtype peptide FAST kinase domain-containing protein 5 1170 TPEAVQKLLEQGL wildtype peptide Fatty acid synthase 1171 NSLAEEKLQASVR wildtype peptide Fatty acid synthase 1172 WRLVDSKGFDEYM wildtype peptide Fatty acid-binding protein, epidermal 1173 RIANRTKNSLTLQ wildtype peptide Fibronectin type-III domain-containing protein 3A G5E9X3_HUMAN_00384;FND3A_HUMAN_00328 1174 RRRLVSKLDLEER wildtype peptide Genetic suppressor element 1 H0Y613_HUMAN_00546;GSE1_HUMAN_00635;GSE1_HUMAN_00666 1175 QTAELTKVFEIRN wildtype peptide Glia maturation factor beta E7EWZ9_HUMAN_00119;G3V4P8_HUMAN_00132 1176 PLGCYKKLIEYHK wildtype peptide Glucosamine-6-phosphate isomerase 2 GNPI2_HUMAN_00051;GNPI2_HUMAN_00051 1177 NEAVYTKMMTKKP wildtype peptide Glucose-6-phosphate 1-dehydrogenase E9PDV8_HUMAN_00403;G6PD_HUMAN_00449;G6PD_HUMAN_00433 1178 RDPQFQKLQQWYR wildtype peptide Glucose-6-phosphate isomerase B3KV55_HUMAN_00336;B4DGN5_HUMAN_00370;F5GYQ4_HUMAN_00435;F8WA20_HUMAN_00 1179 ISGASEKDIVHSG wildtype peptide Glutamate dehydrogenase 1, mitochondrial 460;H0YFJ0_HUMAN_00202 1180 LVDTIEKKKGDFV wildtype peptide Guanylate-binding protein 4

1181 DDKTLPKLERKRL wildtype peptide Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase MESH1 H0YKT9_HUMAN_00090;H0YNP9_HUMAN_00097;MESH1_HUMAN_00097 F5GZ62_HUMAN_00091;F5H1D3_HUMAN_00090;F8VZJ4_HUMAN_00085;H0YG33_HUMAN_001 1182 KVQVSYKGETKAF wildtype peptide Heat shock 70 kDa protein 1A/1B 75 1183 DKLAELKNLGQPI wildtype peptide Heat shock 70 kDa protein 4 E7ET08_HUMAN_00108;E9PK54_HUMAN_00108;E9PKE3_HUMAN_00108;E9PLF4_HUMAN_001 08;E9PN25_HUMAN_00108;E9PN89_HUMAN_00048;E9PPY6_HUMAN_00108;E9PQK7_HUMAN_ 1184 KVQVEYKGETKSF wildtype peptide Heat shock cognate 71 kDa protein 00108;E9PQQ4_HUMAN_00108;HSP7C_HUMAN_00108 A8K7Q2_HUMAN_00276;E9PKE3_HUMAN_00493;E9PM13_HUMAN_00064;E9PNE6_HUMAN_00 1185 DKGRLSKEDIERM wildtype peptide Heat shock cognate 71 kDa protein 366;E9PS65_HUMAN_00103 HNRPQ_HUMAN_00221;HNRPQ_HUMAN_00221;HNRPQ_HUMAN_00221;HNRPQ_HUMAN_0006 1186 AAQEAVKLYNNHE wildtype peptide Heterogeneous nuclear ribonucleoprotein Q 9 Q2L7G6_HUMAN_00351;E7ERE4_HUMAN_00393;E7ETM7_HUMAN_00229;HNRPR_HUMAN_003 1187 DRGAAVKAMDEMN wildtype peptide Heterogeneous nuclear ribonucleoprotein R 92 1188 VRHLYTKDIDIHE wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00277;Q5RI18_HUMAN_00129;HNRPU_HUMAN_00333 1189 QMADTGKLNTLLQ wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00476;HNRPU_HUMAN_00532 1190 KLLEQYKEESKKA wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00595;HNRPU_HUMAN_00651 1191 QAGGDGKTEQKGG wildtype peptide Isoform Short of Heterogeneous nuclear ribonucleoprotein U 1192 TNEYLEKIKQRLF wildtype peptide Histone deacetylase 1 Q6IT96_HUMAN_00361;F5GXM1_HUMAN_00168 1193 VKIELDKSARHLY wildtype peptide Histone deacetylase complex subunit SAP30 Acetylome - Acetyltransferase Microarray page 34 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1194 VSLAALKKALAAA wildtype peptide Histone H1.4 H13_HUMAN_00064;H12_HUMAN_00063;H11_HUMAN_00066 1195 APAPAEKTPVKKK wildtype peptide Histone H1.4 1196 VKPKAAKPKAAKP wildtype peptide Histone H1.5 1197 KGAGAKKDKGGKA wildtype peptide Histone H1x 1198 GGKGLGKGGAKRH wildtype peptide Histone H4 E9PIC4_HUMAN_00007;E9PNS2_HUMAN_00007;E9PNS6_HUMAN_00007;RBBP4_HUMAN_0000 1199 ZZZMADKEAAFDD wildtype peptide Histone-binding protein RBBP4 7 1200 QYFSSAKYAKEGL wildtype peptide Histone-lysine N-methyltransferase MLL E9PQG7_HUMAN_00636;E9PR05_HUMAN_00669;MLL1_HUMAN_00636 1201 TPDPFLKPRCPSL wildtype peptide Histone-lysine N-methyltransferase MLL2 1202 GHLLLQKLLRAKN wildtype peptide Histone-lysine N-methyltransferase MLL2 1203 VSYQGGKSIKLSS wildtype peptide Histone-lysine N-methyltransferase MLL3 H0YMU7_HUMAN_00758;MLL3_HUMAN_00758 D6R967_HUMAN_00152;E2QRM6_HUMAN_00207;F8WDN9_HUMAN_00123;H0Y9D8_HUMAN_00 1204 DIDDVKKFKPGYL wildtype peptide Inorganic pyrophosphatase 2, mitochondrial 204;IPYR2_HUMAN_00240;IPYR2_HUMAN_00196 E5RG13_HUMAN_00049;E5RG94_HUMAN_00049;E5RGY4_HUMAN_00108;E5RHE9_HUMAN_00 049;E5RI82_HUMAN_00049;E5RIF4_HUMAN_00049;E5RIP7_HUMAN_00041;H0YBL1_HUMAN_0 1205 VTATDQKVEKMLI wildtype peptide Inositol monophosphatase 1 0074;IMPA1_HUMAN_00049 1206 AFRFKDKERPRGY wildtype peptide Insulin-degrading enzyme 1207 TTVVNPKYEGKZZ wildtype peptide Integrin beta-1 B4DFG4_HUMAN_00081;C9JFV5_HUMAN_00081;G5E9M5_HUMAN_00081;ILF3_HUMAN_00081; 1208 EGAGEQKTEHMTR wildtype peptide Interleukin enhancer-binding factor 3 LF3_HUMAN_00081;ILF3_HUMAN_00081;ILF3_HUMAN_00081;ILF3_HUMAN_00081 1209 PQEGWKKLAVAIK wildtype peptide Interleukin-1 receptor-associated kinase 4 F8VR40_HUMAN_00034;F8VVZ1_HUMAN_00034;F8VW24_HUMAN_00034 C9JVN9_HUMAN_00155;G3V272_HUMAN_00155;G3V5S1_HUMAN_00155;L2HDH_HUMAN_0015 1210 LQALYEKGLQNGV wildtype peptide L-2-hydroxyglutarate dehydrogenase, mitochondrial 5 F5GXH2_HUMAN_00057;F5GXY2_HUMAN_00057;F5GYU2_HUMAN_00057;F5GZQ4_HUMAN_00 057;F5H5J4_HUMAN_00057;F5H6W8_HUMAN_00057;LDHA_HUMAN_00057;LDHA_HUMAN_000 1211 VDVIEDKLKGEMM wildtype peptide L-lactate dehydrogenase A chain 86;LDHA_HUMAN_00057;LDHA_HUMAN_00057 E9PH51_HUMAN_00195;F5H308_HUMAN_00194;LDHA_HUMAN_00222;LDHA_HUMAN_00251;L 1212 PDLGTDKDKEQWK wildtype peptide L-lactate dehydrogenase A chain DHA_HUMAN_00164;LDHA_HUMAN_00222 E9PH51_HUMAN_00105;F5GXY2_HUMAN_00132;F5GYU2_HUMAN_00132;F5H308_HUMAN_001 1213 KYSPNCKLLIVSN wildtype peptide L-lactate dehydrogenase A chain 04;LDHA_HUMAN_00132;LDHA_HUMAN_00161;LDHA_HUMAN_00132 1214 EVAQLKKSADTLW wildtype peptide L-lactate dehydrogenase B chain 1215 LQEYLGKFRRLED wildtype peptide La-related protein 1 1216 HSPWAVKKINPIC wildtype peptide Lymphokine-activated killer T-cell-originated protein kinase 1217 QAIHQLKVNGEDP wildtype peptide Lysine--tRNA ligase H3BVA8_HUMAN_00116;SYK_HUMAN_00116 1218 DDLKKKKAKAGKL wildtype peptide M-phase phosphoprotein 8 F5H8H9_HUMAN_00172;MPP8_HUMAN_00172 1219 AEQIRSKSHLIQV wildtype peptide Mitotic spindle assembly checkpoint protein MAD1

1220 QGAALDKYAKKSV wildtype peptide Malate dehydrogenase, cytoplasmic F5H098_HUMAN_00136;C9JF79_HUMAN_00136;C9JRL4_HUMAN_00073;MDHC_HUMAN_00029 1221 GVYNPNKIFGVTT wildtype peptide Malate dehydrogenase, mitochondrial

1222 LLNHPDKGGSPYI wildtype peptide Mitochondrial import inner membrane translocase subunit TIM14 B7WPJ1_HUMAN_00199;B9A067_HUMAN_00164;C9J406_HUMAN_00112;F5GZ32_HUMAN_0020 1223 RLAQQEKQEQVKI wildtype peptide Mitochondrial inner membrane protein 0;IMMT_HUMAN_00200 1224 DLADFVKIAHPEP wildtype peptide Mitochondrial intermediate peptidase 1225 AASVAAKNLALLK wildtype peptide Mitogen-activated protein kinase 7 C9JUK9_HUMAN_00035;MK07_HUMAN_00035 1226 RRESSLKYQTRCI wildtype peptide Mitotic checkpoint protein BUB3 B4DDM6_HUMAN_00099;BUB3_HUMAN_00179 B4E049_HUMAN_00138;B1AMS2_HUMAN_00196;E7ETH8_HUMAN_00226;F5H1J5_HUMAN_002 26;F8W8Q8_HUMAN_00196;SEPT6_HUMAN_00196;SEPT6_HUMAN_00196;SEPT6_HUMAN_001 1227 SKSELTKFKIKIT wildtype peptide Septin-6 96 1228 DKSFVEKVMQEQG wildtype peptide Myosin-9 Acetylome - Acetyltransferase Microarray page 35 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1229 AKHNLEKQIATLH wildtype peptide Myosin-9 1230 EKTISAKYAEERD wildtype peptide Myosin-9 MYH14_HUMAN_00845;F2Z2S7_HUMAN_00845;F2Z2U8_HUMAN_00878;F2Z2U9_HUMAN_00845 ;F8VTL3_HUMAN_00859;F8W6L6_HUMAN_00844;G8JLL9_HUMAN_00886;MYH10_HUMAN_0084 4;MYH10_HUMAN_00849;MYH14_HUMAN_00886;MYH14_HUMAN_00845;MYH14_HUMAN_00845 1231 NCAAYLKLRHWQW wildtype peptide Myosin-10 ;MYH14_HUMAN_00853 1232 GADKTVKGPDGLT wildtype peptide Myotrophin 1233 PVSYNDKFYRKFG wildtype peptide Isoform 2 of N-alpha-acetyltransferase 50 1234 FNETFLKRNSDSL wildtype peptide N-alpha-acetyltransferase 15, NatA auxiliary subunit 1235 SVRLSAKPAPPKP wildtype peptide Non-histone chromosomal protein HMG-17 C9IZL7_HUMAN_00096;C9JYS8_HUMAN_00096;F5GYZ3_HUMAN_00007;H7C367_HUMAN_0001 1236 MRKLFEKYGKAGE wildtype peptide Non-POU domain-containing octamer-binding protein 5 1237 FRKPGEKTFTQRS wildtype peptide Non-POU domain-containing octamer-binding protein C9IZL7_HUMAN_00068;C9J4X2_HUMAN_00068;C9JYS8_HUMAN_00068 B4DHP6_HUMAN_00061;E9PLD1_HUMAN_00142;H0YCB0_HUMAN_00117;A6NM69_HUMAN_00 1238 RTIPTDKHVDLLI wildtype peptide Non-specific lipid-transfer protein 098;C9JC79_HUMAN_00118;NLTP_HUMAN_00098 B4DHP6_HUMAN_00260;E9PLD1_HUMAN_00341;A6NM69_HUMAN_00297;C9JC79_HUMAN_003 1239 DNTYGGKWVINPS wildtype peptide Non-specific lipid-transfer protein 17;NLTP_HUMAN_00297 1240 ISDVFAKNDLAVV wildtype peptide Nucleolin 1241 EKATFIKVPQNQN wildtype peptide Nucleolin Q9BQ02_HUMAN_00285;E7EX81_HUMAN_00405;H7BY16_HUMAN_00138 1242 KNQGDPKKMAPPP wildtype peptide Nucleolin Q9BQ02_HUMAN_00015;E7EX81_HUMAN_00015 1243 KSNQNGKDSKPSS wildtype peptide Nucleophosmin 1244 CELKADKDYHFKV wildtype peptide Nucleophosmin NPM_HUMAN_00027;NPM_HUMAN_00027 1245 IEAELNKHWRRLL wildtype peptide Nucleoporin NUP188 homolog F8W973_HUMAN_00038;H7C4K7_HUMAN_00059;NU188_HUMAN_00038 1246 HPAPNFKATAVMP wildtype peptide Peroxiredoxin-1 1247 LSDYKGKYVVFFF wildtype peptide Peroxiredoxin-1 1248 LAPEFAKRNVKLI wildtype peptide Peroxiredoxin-6 C9JB63_HUMAN_00098;F1LLU7_HUMAN_00051;F8W6J1_HUMAN_00051;F8WAW4_HUMAN_00 1249 NSMNQVKLLKKDP wildtype peptide Enoyl-CoA delta isomerase 2, mitochondrial 021;ECI2_HUMAN_00016 1250 PDGTYVKPLSNKL wildtype peptide Peroxisomal acyl-coenzyme A oxidase 1 F5GYQ8_HUMAN_00229;F5H0M0_HUMAN_00199;ACOX1_HUMAN_00267 1251 KNSPLNKAEVHES wildtype peptide Peroxisomal acyl-coenzyme A oxidase 1 F5GYQ8_HUMAN_00605;F5H0M0_HUMAN_00575;ACOX1_HUMAN_00643 B4E329_HUMAN_00165;B7ZKZ1_HUMAN_00251;E7EMY2_HUMAN_00211;E7EPA1_HUMAN_002 1252 MLIPKEKPPITVV wildtype peptide Phosphoribosyl pyrophosphate synthase-associated protein 2 51 1253 GDDALEKRFLDKA wildtype peptide Phosphoserine aminotransferase CD11A_HUMAN_00213;Q5QPR3_HUMAN_00222;Q5QPR4_HUMAN_00189;E7ESP2_HUMAN_002 23;CD11B_HUMAN_00008;CD11B_HUMAN_00225;CD11B_HUMAN_00224;CD11B_HUMAN_0018 1;CD11B_HUMAN_00215;CD11B_HUMAN_00191;CD11A_HUMAN_00223;CD11A_HUMAN_00222; 1254 REDYSDKVKASHW wildtype peptide Cyclin-dependent kinase 11B CD11A_HUMAN_00213;CD11A_HUMAN_00165 D3DQ69_HUMAN_00203;D3DQ70_HUMAN_00203;PAIRB_HUMAN_00140;PAIRB_HUMAN_00140 1255 RERRFEKPLEEKG wildtype peptide Plasminogen activator inhibitor 1 RNA-binding protein PAIRB_HUMAN_00140 1256 NFSTDIKDSKAYY wildtype peptide Plastin-2 1257 SSISSFKDPKIST wildtype peptide Plastin-2 Q59F66_HUMAN_00131;C9JMU5_HUMAN_00050;H3BLZ8_HUMAN_00129;DDX17_HUMAN_0005 1258 DLSELPKFEKNFY wildtype peptide Probable ATP-dependent RNA helicase DDX17 0;DDX17_HUMAN_00050;DDX17_HUMAN_00050 1259 TAGNAEKLEIAKR wildtype peptide Probable ATP-dependent RNA helicase DDX46 1260 RLGAGAKFDTRRF wildtype peptide Probable ATP-dependent RNA helicase DDX52 F5H0R7_HUMAN_00015;F5H5G9_HUMAN_00015 1261 KNYITIKDFLKTF wildtype peptide Probable cysteine--tRNA ligase, mitochondrial F5H7A3_HUMAN_00067;H0YFF0_HUMAN_00023 1262 THTETGKVLFGPE wildtype peptide Probable global transcription activator SNF2L2 B1ALG1_HUMAN_00199;B1ALF6_HUMAN_00241;B1ALG2_HUMAN_00217;B1ALG5_HUMAN_000 1263 KGRDKGKGKKRPN wildtype peptide Probable global transcription activator SNF2L2 82;F6XG14_HUMAN_00239;SMCA2_HUMAN_01535 1264 RIVENEKINAEKS wildtype peptide Protein dpy-30 homolog Acetylome - Acetyltransferase Microarray page 36 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1265 RDAQLIKELGLRL wildtype peptide Protein ETHE1, mitochondrial 1266 KGYYDPKEMMDRD wildtype peptide Piezo-type mechanosensitive ion channel component 1 1267 LSGNDFKGGYFPE wildtype peptide Protein flightless-1 homolog B3KPL2_HUMAN_00048;B5MBX1_HUMAN_00032;C9J929_HUMAN_00032;D3DQA3_HUMAN_000 32;D6R9B8_HUMAN_00032;G3XAA4_HUMAN_00032;JADE2_HUMAN_00032;JADE2_HUMAN_00 1268 SASRCSKLPSSTK wildtype peptide Protein Jade-2 032 1269 MYRIKSKIPNEHK wildtype peptide Protein Jade-3 F2Z2B6_HUMAN_00032;F2Z3N8_HUMAN_00032 1270 CQRTWDKIFHNTL wildtype peptide Protein unc-13 homolog D B4DTQ6_HUMAN_00511;UN13D_HUMAN_00511

1271 ITTKDLKEKKEVV wildtype peptide Prothymosin alpha B8ZZA1_HUMAN_00039;B8ZZI3_HUMAN_00018;B8ZZQ6_HUMAN_00018;PTMA_HUMAN_00018 1272 IQQHFLKPLQRFL wildtype peptide Proto-oncogene vav 1273 GFSGILKERYSDF wildtype peptide Pseudouridylate synthase 7 homolog 1274 EGYPLWKVTFPVR wildtype peptide Purine nucleoside phosphorylase G3V393_HUMAN_00016;G3V5M2_HUMAN_00134 1275 SKNLTIKTESTLK wildtype peptide Putative fatty acid-binding protein 5-like protein 3 1276 SFENISKWLRNID wildtype peptide Ras-related protein Rab-10 RAB8B_HUMAN_00007;F5GY21_HUMAN_00007;H0YNE9_HUMAN_00007;H0YL94_HUMAN_0000 1277 ZZZZMAKTYDYLF wildtype peptide Ras-related protein Rab-8A 7;H0YLJ8_HUMAN_00007;H0YMN7_HUMAN_00007 PTBP1_HUMAN_00259;B1ALY6_HUMAN_00162;PTBP3_HUMAN_00226;PTBP3_HUMAN_00229; PTBP3_HUMAN_00263;PTBP3_HUMAN_00260;PTBP3_HUMAN_00229;PTBP1_HUMAN_00259;P 1278 LRIDFSKLTSLNV wildtype peptide Polypyrimidine tract-binding protein 3 TBP1_HUMAN_00259 B1ALY6_HUMAN_00415;PTBP3_HUMAN_00479;PTBP3_HUMAN_00516;PTBP3_HUMAN_00513; 1279 AFKFFQKDRKMAL wildtype peptide Polypyrimidine tract-binding protein 3 PTBP3_HUMAN_00482 1280 EQESTKKPYRIES wildtype peptide Remodeling and spacing factor 1 RSF1_HUMAN_01308;RSF1_HUMAN_01087 1281 GRLDYHKEQAAQL wildtype peptide Replication factor C subunit 3 A8MX32_HUMAN_00020;C9JU95_HUMAN_00020 1282 PTPKGGKYAINPH wildtype peptide RNA-binding protein NOB1 1283 EKEPFGKLQLSSR wildtype peptide Round spermatid basic protein 1-like protein 1284 ZZZZZMKIEEVKS wildtype peptide RuvB-like 1 1285 AVYLPPKAETGKC wildtype peptide S-formylglutathione hydrolase 1286 SSYTKLKGCKVLH wildtype peptide Sacsin 1287 RYVVACKEPKKKZ wildtype peptide SAGA-associated factor 29 homolog 1288 EVKLAIKPFYQNK wildtype peptide Protein SCAF11 F8VXG7_HUMAN_01200;SCAFB_HUMAN_01077 1289 SKHSWGKTYGEHK wildtype peptide Sialic acid synthase 1290 LKRFDDKYTLKLT wildtype peptide Signal peptidase complex subunit 2 E9PI68_HUMAN_00200;E9PL01_HUMAN_00100;E9PRB9_HUMAN_00030 1291 KARVVLKYRHSDG wildtype peptide Signal recognition particle 9 kDa protein E9PE20_HUMAN_00030;SRP09_HUMAN_00030 1292 PKSFFSKQPVRNK wildtype peptide Signal-induced proliferation-associated 1-like protein 3 1293 ARQCLLKNISIRR wildtype peptide Sister chromatid cohesion protein PDS5 homolog A 1294 FLAVDPKGRAVMI wildtype peptide Splicing factor 3B subunit 3 1295 PLTRGAKEEHGGL wildtype peptide Splicing factor U2AF 65 kDa subunit 1296 VVQIVEKFIKKCK wildtype peptide Splicing factor, arginine/serine-rich 15 C9J1W7_HUMAN_00049;C9JD39_HUMAN_00049;SFR15_HUMAN_00049 1297 RTSGRDKYGPPVR wildtype peptide Serine/arginine-rich splicing factor 6 1298 FKRLFAKYGEPGE wildtype peptide Splicing factor, proline- and glutamine-rich 1299 GEVFINKGKGFGF wildtype peptide Splicing factor, proline- and glutamine-rich 1300 PKGYVAKSPDEAY wildtype peptide Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial F5GXC8_HUMAN_00020;SUCB1_HUMAN_00056 1301 IENEAAKYDLKYI wildtype peptide Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial E9PDQ8_HUMAN_00291;SUCB2_HUMAN_00291 1302 GSNYSVKTVEKTW wildtype peptide Sulfide:quinone oxidoreductase, mitochondrial H3BMS6_HUMAN_00121;H3BNX3_HUMAN_00173 1303 YARLFSKSIETLR wildtype peptide SUMO-activating enzyme subunit 2 B3KWB9_HUMAN_00228;F5H4L5_HUMAN_00197 1304 KALSNQKYREMYE wildtype peptide Superkiller viralicidic activity 2-like 2 1305 DEPIFGKKPRIEE wildtype peptide Superkiller viralicidic activity 2-like 2 1306 VFKEVQKLFKRKN wildtype peptide Tetratricopeptide repeat protein 39C G3V1P2_HUMAN_00109;TT39C_HUMAN_00355 1307 ENCAILKELVTLR wildtype peptide Thimet oligopeptidase Acetylome - Acetyltransferase Microarray page 37 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1308 HLDTFLKGKSGLR wildtype peptide Thiopurine S-methyltransferase 1309 GEKPYWKDPNNDF wildtype peptide Thioredoxin domain-containing protein 17 1310 LSLDDFKGKYLVL wildtype peptide Thioredoxin-dependent peroxide reductase, mitochondria 1311 GFRNWLKEGHPVT wildtype peptide Thiosulfate sulfurtransferase 1312 TDVEYKKKQDPYL wildtype peptide Transducin beta-like protein 2 Q96E41_HUMAN_00314;E9PF19_HUMAN_00278 A6NIY7_HUMAN_00237;Q5JSY7_HUMAN_00222;E9PCB5_HUMAN_00230;F8W6T6_HUMAN_002 12;F8W9R0_HUMAN_00237;G8JLG4_HUMAN_00237;H7C4E4_HUMAN_00028;H7C4P7_HUMAN_ 1313 KQKTEEKEIAARY wildtype peptide Transducin-like enhancer protein 4 00107;H7C4W5_HUMAN_00034;TLE4_HUMAN_00237;TLE4_HUMAN_00237 Q4VXL4_HUMAN_00511;Q4VXL8_HUMAN_00974;D6RAA5_HUMAN_00944;E7EMZ9_HUMAN_02 762;E9PBC6_HUMAN_02811;H7BXY4_HUMAN_02797;TACC2_HUMAN_00962;TACC2_HUMAN_0 1314 KVHAEEKLDRANA wildtype peptide Transforming acidic coiled-coil-containing protein 2 0507;TACC2_HUMAN_02807;TACC2_HUMAN_01030;TACC2_HUMAN_00932

1315 IVEWTKKIQDIVR wildtype peptide Transient receptor potential cation channel subfamily M member 2 E9PGK7_HUMAN_00405;TRPM2_HUMAN_00405;TRPM2_HUMAN_00405 1316 TGKYFDKASYRVY wildtype peptide Transketolase B3KSI4_HUMAN_00061;B4E022_HUMAN_00097;E9PFF2_HUMAN_00144 B3KSI4_HUMAN_00177;B4E022_HUMAN_00213;E7EPA7_HUMAN_00268;E9PFF2_HUMAN_0026 1317 KESWHGKPLPKNM wildtype peptide Transketolase 0 TBA4A_HUMAN_00164;TBA1A_HUMAN_00164;TBA1C_HUMAN_00164;A8MUB1_HUMAN_00149; C9JJQ8_HUMAN_00187;C9JQ00_HUMAN_00149;F5H5D3_HUMAN_00234;F8VQQ4_HUMAN_001 1318 SVDYGKKSKLEFS wildtype peptide Tubulin alpha-1B chain 29;G3V1U9_HUMAN_00129;C9JDS9_HUMAN_00011;F8VXZ4_HUMAN_00011 G3V2N6_HUMAN_00058;G3V2R8_HUMAN_00058;G3V3R4_HUMAN_00058;G3V5W4_HUMAN_00 1319 NEASSHKYVPRAI wildtype peptide Tubulin beta-3 chain 058 1320 DQKVLEKQLPGSM wildtype peptide Tubulin-specific chaperone E 1321 LKEFFAKARAGSV wildtype peptide Twinfilin-2 1322 YYSLASKVEGPPG wildtype peptide Tyrosine-protein kinase ZAP-70 ZAP70_HUMAN_00296;ZAP70_HUMAN_00477 1323 YPHRVAKFPENRN wildtype peptide Tyrosine-protein phosphatase non-receptor type 2 PTN2_HUMAN_00038;PTN2_HUMAN_00038 B4DN25_HUMAN_00010;E7ER83_HUMAN_00107;E7ETF4_HUMAN_00107;E7EV97_HUMAN_001 1324 GRAADLKYIEACA wildtype peptide UDP-glucose 6-dehydrogenase 20 1325 TKEFFTKHKYFGL wildtype peptide UDP-N-acetylhexosamine pyrophosphorylase B1AR80_HUMAN_00180;UAP1_HUMAN_00180;UAP1_HUMAN_00180 1326 ZMNRDIKMPLRKH wildtype peptide Uncharacterized protein C12orf40 CL040_HUMAN_00084;CL040_HUMAN_00007 1327 SQAAPVKWIFQDN wildtype peptide Ligand-dependent nuclear receptor-interacting factor 1 1328 RHFHGVKDIKWRP wildtype peptide Uncharacterized protein C21orf59 1329 NSRAYSKNVEGQD wildtype peptide KAT8 regulatory NSL complex subunit 1-like protein 1330 LLREGCKKILVAD wildtype peptide Vacuolar protein sorting-associated protein 41 homolog E9PF36_HUMAN_00736;H7BZX6_HUMAN_00109;VPS41_HUMAN_00761 F6VX93_HUMAN_00312;G3V0H8_HUMAN_00162;VPS53_HUMAN_00331;VPS53_HUMAN_00360 1331 FEGFLAKRFSGCT wildtype peptide Vacuolar protein sorting-associated protein 53 homolog VPS53_HUMAN_00360 1332 HADFIHKHVKGSR wildtype peptide Valacyclovir hydrolase H7C0M3_HUMAN_00023;BPHL_HUMAN_00240 H0Y407_HUMAN_00327;H0Y462_HUMAN_00327;H0YBZ0_HUMAN_00299;VEGFA_HUMAN_0032 7;VEGFA_HUMAN_00327;VEGFA_HUMAN_00147;VEGFA_HUMAN_00147;VEGFA_HUMAN_0014 1333 KKSVRGKGKGQKR wildtype peptide Vascular endothelial growth factor A 7 1334 ATQVGEKTPKDES wildtype peptide Vasodilator-stimulated phosphoprotein

1335 PATGAVKEKITAF wildtype peptide Very long-chain specific acyl-CoA dehydrogenase, mitochondrial F5H2A9_HUMAN_00299;G3V1M7_HUMAN_00322;ACADV_HUMAN_00254 1336 HTDAFSKRSDLIQ wildtype peptide Zinc finger protein 749 1337 NFVGGNKLQSTGN wildtype peptide Zinc finger RNA-binding protein B4DQR8_HUMAN_00192;B4DQX7_HUMAN_00122;H0Y2Y8_HUMAN_00247;H7C3D3_HUMAN_00 1338 FTPVASKFSPGAP wildtype peptide Zyxin 096 1339 NLYIYSKKSSTSR wildtype peptide ZZ-type zinc finger-containing protein 3 ZZZ3_HUMAN_00724;ZZZ3_HUMAN_00231 1340 ZZZZMKKRNKNEV wildtype peptide NONE 1341 DKSSDKKTQTKGK wildtype peptide Uncharacterized protein ENSP00000369749 1342 FAKNVQKRLNRAQ wildtype peptide Amphiphysin F5H533_HUMAN_00015;F5H6E8_HUMAN_00015;AMPH_HUMAN_00015 Acetylome - Acetyltransferase Microarray page 38 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1343 RISSLPKSEKPLN wildtype peptide Breast cancer type 2 susceptibility protein 1344 SAWPLAKCNTNTS wildtype peptide Cyclic nucleotide-gated cation channel alpha-3 1345 LYRIKFKESFAEM wildtype peptide Cytochrome c oxidase subunit 4 isoform 1, mitochondrial H3BN72_HUMAN_00087;H3BNV9_HUMAN_00087;H3BPG0_HUMAN_00049 1346 AEDEEWKRIRPLL wildtype peptide Cytochrome P450, family 3, subfamily A, polypeptide 5 variant 1347 RSPDSPKTPKSPS wildtype peptide Transcription factor E2F3 1348 PSECRMKDKSTRD wildtype peptide Desmocollin-1 1349 AGKKAKKPAKAAA wildtype peptide Histone H1.1 PROM1_HUMAN_00082;PROM1_HUMAN_00082;PROM1_HUMAN_00082;PROM1_HUMAN_0008 1350 LRKFLQKAYESKI wildtype peptide Prominin-1 2;PROM1_HUMAN_00082;PROM1_HUMAN_00082 1351 LADKEVKRPQHSQ wildtype peptide Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1352 ZZZMAGKQAVSAS wildtype peptide Cytochrome b-c1 complex subunit 7 B7Z2R2_HUMAN_00007;E5RJU0_HUMAN_00007 1353 VKVDVEKQMPKKY wildtype peptide Helicase SRCAP SRCAP_HUMAN_00847;SRCAP_HUMAN_00847 1354 APKADSKYSPSVK wildtype peptide Integrin alpha-9 1355 IETDKPKVAPAPA wildtype peptide Coatomer subunit delta B0YIW6_HUMAN_00252;E9PEU4_HUMAN_00123 B7Z4A6_HUMAN_00077;E9PCN5_HUMAN_00123;F8WAF2_HUMAN_00237;H7C1X9_HUMAN_00 1356 LLAVLEKMISQGN wildtype peptide CCR4-NOT transcription complex subunit 10 136;CNOTA_HUMAN_00176;CNOTA_HUMAN_00177;CNOTA_HUMAN_00177 1357 WLQAVIKRWWSEL wildtype peptide Uncharacterized protein C15orf29 H0YLX9_HUMAN_00020;H0YMR8_HUMAN_00101 1358 LIDVQKKLESILA wildtype peptide Probable ATP-dependent RNA helicase DDX10 E9PIF2_HUMAN_00453;E7EUR6_HUMAN_00359 1359 KAVVHLKKAHRRV wildtype peptide Testis-expressed sequence 15 protein 1360 EGKISSKTAAKLS wildtype peptide Ubiquitin-conjugating enzyme E2 E2 C9J180_HUMAN_00048;F8W8F0_HUMAN_00048;F8WF15_HUMAN_00048 1361 KEQKEQKEEPLRE wildtype peptide C10orf27 protein 1362 RMAKAQKQFRLFK wildtype peptide Abnormal spindle-like microcephaly-associated protein 1363 VEGSELKKVRSNS wildtype peptide Inactive phospholipase C-like protein 2 PLCL2_HUMAN_00024;PLCL2_HUMAN_00024 1364 ITADPKKELENLA wildtype peptide KIF1-binding protein 1365 KVLELLKVAWKRR wildtype peptide Protein deltex-2 E7ET89_HUMAN_00462;F5GX89_HUMAN_00462;DTX2_HUMAN_00506 1366 YMESGTKKDNSIL wildtype peptide Leucine-rich repeat transmembrane protein FLRT1 1367 LELSASKKKKTQE wildtype peptide ERC protein 2

1368 TRFAHLKKSKESE wildtype peptide Transmembrane protein 131-like C9K0F5_HUMAN_00569;D3DP10_HUMAN_00422;T131L_HUMAN_00199;T131L_HUMAN_00570 1369 QLGADSKLQLKQS wildtype peptide G protein-regulated inducer of neurite outgrowth 3 1370 EMLKYKKEKQQEE wildtype peptide Probable ATP-dependent RNA helicase YTHDC2 D6RA70_HUMAN_00399;E9PE26_HUMAN_00309 1371 RDLLTLKNFTGEE wildtype peptide Ornithine carbamoyltransferase, mitochondrial 1372 VAEALTKAEAGRV wildtype peptide Rootletin B1AKD8_HUMAN_00593;CROCC_HUMAN_00015 ACS2B_HUMAN_00298;F5GWL3_HUMAN_00219;F5H4B8_HUMAN_00070;H3BTX9_HUMAN_002 1373 DPLVILKTLSSYP wildtype peptide Acyl-coenzyme A synthetase ACSM2A, mitochondrial 19 1374 TKQIRDKVILLFS wildtype peptide Olfactory receptor 52H1 B4DSN4_HUMAN_00208;E7EML5_HUMAN_00765;E7ET57_HUMAN_00768;KDM2B_HUMAN_007 1375 EGQEPAKRRSECE wildtype peptide Lysine-specific demethylase 2B 68;KDM2B_HUMAN_00765;KDM2B_HUMAN_00734 1376 KCKECGKAFQLHI wildtype peptide Zinc finger protein 780B 1377 KNEPLGKLTSLFK wildtype peptide Telomere-associated protein RIF1 H7BZN3_HUMAN_00791;RIF1_HUMAN_00799 1378 LADEALKLGILDK wildtype peptide Peroxisomal bifunctional enzyme F5GWL9_HUMAN_00165;ECHP_HUMAN_00069 1379 GEIFELKAELNNE wildtype peptide AP-2 complex subunit beta 1380 KEADIEKLNQALC wildtype peptide Sperm-associated antigen 5 1381 KEKSKKKKGGKTE wildtype peptide Coiled-coil domain-containing protein 80 E7ENF7_HUMAN_00214;CCD80_HUMAN_00597 1382 PELEEQKDSLVIN wildtype peptide Dynein heavy chain 2, axonemal F5GZ11_HUMAN_00059;F5H155_HUMAN_00059;F5H245_HUMAN_00059;F5H5G7_HUMAN_0005 1383 VALDKLKGEMMDL wildtype peptide L-lactate dehydrogenase C chain 9;G3XAP5_HUMAN_00059 D3DPF9_HUMAN_16525;D3DPG0_HUMAN_24541;E7ENC6_HUMAN_16523;TITIN_HUMAN_1665 0;TITIN_HUMAN_23022;TITIN_HUMAN_23857;TITIN_HUMAN_16525;TITIN_HUMAN_23044;TITIN 1384 ENSSGTKSAFVTV wildtype peptide Titin _HUMAN_22499;TITIN_HUMAN_23214;TITIN_HUMAN_24074;TITIN_HUMAN_16717 Acetylome - Acetyltransferase Microarray page 39 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1385 WGLAIRKTPMLPA wildtype peptide Protein C15orf2 C9JB80_HUMAN_00469;E7ET15_HUMAN_00901;H7C4V2_HUMAN_00222;SR140_HUMAN_00901 1386 ERDKKDKEKLESR wildtype peptide U2 snRNP-associated SURP motif-containing protein ;SR140_HUMAN_00493 1387 DEADDEKMKELLR wildtype peptide Ankyrin repeat domain-containing protein 31 1388 IALKARKSAIEQD wildtype peptide Rap guanine nucleotide exchange factor 5 1389 MAQAEGKFAQKEE wildtype peptide WD repeat-containing protein 87 E7ESW6_HUMAN_01675;WDR87_HUMAN_01675 1390 AEKINAKLNYVPL wildtype peptide Probable ATP-dependent RNA helicase DDX46 FANK1_HUMAN_00034;A6NH44_HUMAN_00028;A6NKD7_HUMAN_00028;A6NP17_HUMAN_000 28;C9JD80_HUMAN_00028;H7BY65_HUMAN_00034;FANK1_HUMAN_00034;FANK1_HUMAN_000 1391 YWDLEKKAKRQGP wildtype peptide Fibronectin type 3 and ankyrin repeat domains protein 1 34 B5MCW5_HUMAN_00204;E7EPT8_HUMAN_00340;E7EW79_HUMAN_00204;E9PH21_HUMAN_0 1392 WAGVSSKSMKELK wildtype peptide Ral-GDS-related protein 0340;E9PH87_HUMAN_00340

C1KBH7_HUMAN_00165;E7EU09_HUMAN_00073;E9PKF2_HUMAN_00073;E9PKV7_HUMAN_000 75;E9PNM3_HUMAN_00164;E9PQ40_HUMAN_00073;FGFR1_HUMAN_00075;FGFR1_HUMAN_00 075;FGFR1_HUMAN_00073;FGFR1_HUMAN_00075;FGFR1_HUMAN_00073;FGFR1_HUMAN_001 65;FGFR1_HUMAN_00164;FGFR1_HUMAN_00156;FGFR1_HUMAN_00195;FGFR1_HUMAN_0007 1393 PEKMEKKLHAVPA wildtype peptide Fibroblast growth factor receptor 1 5;FGFR1_HUMAN_00075;FGFR1_HUMAN_00162;FGFR1_HUMAN_00164;FGFR1_HUMAN_00164 1394 YQQKPEKAPKSLI wildtype peptide Ig kappa chain V-I region HK101 (Fragment) F71F1_HUMAN_00206;F8WC62_HUMAN_00206;F8WC78_HUMAN_00063;H7C4R1_HUMAN_000 1395 GLSITTKDPRILV wildtype peptide HCG2039358, isoform CRA_b 62;F71F1_HUMAN_00206 1396 SNLTKHKKIHIEK wildtype peptide Zinc finger protein 43 H0Y3P3_HUMAN_00500;ZNF43_HUMAN_00495 1397 LHFSNMKTVDCVE wildtype peptide Pleckstrin homology-like domain family A member 1 1398 SVEPKKKEQENKT wildtype peptide Histone-lysine N-methyltransferase MLL3 H7BY37_HUMAN_00303;MLL3_HUMAN_01858;MLL3_HUMAN_02797 E7EX30_HUMAN_00022;E9PHH4_HUMAN_00043;F8W9E3_HUMAN_00043;H0YBA3_HUMAN_00 111;H7BXY2_HUMAN_00043;NRG1_HUMAN_00022;NRG1_HUMAN_00043;NRG1_HUMAN_00043 ;NRG1_HUMAN_00043;NRG1_HUMAN_00043;NRG1_HUMAN_00043;NRG1_HUMAN_00043;NRG 1399 PRLKEMKSQESAA wildtype peptide Pro-neuregulin-1, membrane-bound isoform 1_HUMAN_00258 1400 LPSISTKENTLSK wildtype peptide Proenkephalin-B 1401 MRVENSKAEKPKP wildtype peptide Pannexin-2 PANX2_HUMAN_00456;PANX2_HUMAN_00322 1402 TFKAFSKKMDDSV wildtype peptide Sorting nexin-33 1403 ARNAEEKAKKAIT wildtype peptide Myosin-3 MYH1_HUMAN_01758;MYH2_HUMAN_01760;MYH4_HUMAN_01758 1404 SQESCEKKDFLSA wildtype peptide Protocadherin gamma-A2 B7Z223_HUMAN_00167;B7Z257_HUMAN_00225;Q5T3H5_HUMAN_00082;RGS7_HUMAN_00251 1405 TPTPETKPPTEDE wildtype peptide Regulator of G-protein signaling 7 RGS7_HUMAN_00251;RGS7_HUMAN_00198;RGS7_HUMAN_00251 1406 QHPDTLKFTSIED wildtype peptide Nebulin F8WCL5_HUMAN_00992;F8WCP0_HUMAN_00992 1407 VYVYNGKETTLGD wildtype peptide Phosphatidylinositol-glycan-specific phospholipase D 1408 DKIVIQKYHTVKG wildtype peptide Heterogeneous nuclear ribonucleoprotein A1-like 2 1409 EEDPEYKKKFRAN wildtype peptide Protein FAM161A H7C4C9_HUMAN_00275;F161A_HUMAN_00170;F161A_HUMAN_00279 1410 SDGKLEKAIAKDL wildtype peptide Sentan C9JRU3_HUMAN_00079;C9JXY5_HUMAN_00075 1411 TFTTSYKLKRHLQ wildtype peptide Zinc finger X-linked protein ZXDA 1412 LNNELQKKQKAYN wildtype peptide Centrosomal protein of 290 kDa 1413 PLLSQLKGPRGGP wildtype peptide Death-inducer obliterator 1 CP4F3_HUMAN_00346;CP4FB_HUMAN_00346;A8MU03_HUMAN_00197;F5H469_HUMAN_00273 1414 VLYHLAKHPEYQE wildtype peptide Leukotriene-B(4) omega-hydroxylase 1 F8W978_HUMAN_00346 1415 NMKAVLKTSSPSV wildtype peptide FH1/FH2 domain-containing protein 3 E7ETX5_HUMAN_00539;FHOD3_HUMAN_01297;FHOD3_HUMAN_01335 VIP1_HUMAN_00259;A8MYH2_HUMAN_00259;B7WPL9_HUMAN_00259;D6RBU4_HUMAN_0017 0;D6RFZ8_HUMAN_00248;E9PGM8_HUMAN_00248;F8W9A8_HUMAN_00259;H7BXU5_HUMAN_ Inositol hexakisphosphate and diphosphoinositol- 00260;VIP2_HUMAN_00248;VIP1_HUMAN_00259;VIP1_HUMAN_00259;VIP1_HUMAN_00259;VIP 1416 TDGTDVKVYTVGP wildtype peptide pentakisphosphate kinase 2 1_HUMAN_00259;VIP1_HUMAN_00259;VIP1_HUMAN_00259 Acetylome - Acetyltransferase Microarray page 40 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1417 KRNEEQKKNLQFS wildtype peptide Leucine-rich repeat and death domain-containing protein 1 1418 ERTKEEKQELKEK wildtype peptide MORC family CW-type zinc finger protein 4 A1YR24_HUMAN_00601;H7BXF1_HUMAN_00853 1419 ENLTLGKKAELQH wildtype peptide POM121-like protein 2 (Fragment)

1420 GTISNGKNPPTLK wildtype peptide A disintegrin and metalloproteinase with thrombospondin motifs 12 1421 FPEDPVKIVRAQG wildtype peptide Alanine--glyoxylate aminotransferase 2-like 2 D6RAR0_HUMAN_00033;D6RCB8_HUMAN_00033 A6NBZ8_HUMAN_00223;B7WNR0_HUMAN_00108;D6RHD5_HUMAN_00073;E7ESU5_HUMAN_0 1422 SAKQRLKCASLQK wildtype peptide Serum albumin 0232;H0YA55_HUMAN_00068 1423 KIHAGPKFASYLT wildtype peptide Delta-1-pyrroline-5-carboxylate synthase ANKH1_HUMAN_01685;B3KU50_HUMAN_00099;Q8IWZ2_HUMAN_01685;E7EUV3_HUMAN_016 02;E7EWI7_HUMAN_01122;E9PF56_HUMAN_01685;F5GZ24_HUMAN_00120;F6WFL0_HUMAN_0 0068;G5E964_HUMAN_01464;H0Y472_HUMAN_00207;H0Y4P6_HUMAN_00341;H0Y785_HUMAN _00176;H0Y7Y3_HUMAN_00136;H0YM23_HUMAN_01599;ANR17_HUMAN_01714;ANR17_HUMA 1424 SPKRGQKREEGWK wildtype peptide Ankyrin repeat domain-containing protein 17 N_01122;ANKH1_HUMAN_01685 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat F5H682_HUMAN_00099;H7BXV4_HUMAN_00146;ANR44_HUMAN_00171;ANR44_HUMAN_00171 1425 NINAFDKKDRRAL wildtype peptide subunit B ;ANR44_HUMAN_00146;ANR44_HUMAN_00171 1426 GDEEKDKGLQTSQ wildtype peptide Calreticulin 1427 KPEDWDKPEHIPD wildtype peptide Calreticulin 1428 SLPSCQKMKRVVQ wildtype peptide Histone acetyltransferase p300 CBP_HUMAN_01797;Q4LE28_HUMAN_01827;E9PEX7_HUMAN_00332 1429 DKSEGGKRKADSD wildtype peptide Chromobox protein homolog 1 B5MD17_HUMAN_00084;C9JWS9_HUMAN_00084;E9PCS5_HUMAN_00084 1430 MFLMKWKDSDEAD wildtype peptide Chromobox protein homolog 3 1431 DIKSKKKREQSND wildtype peptide Chromobox protein homolog 5 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, Q96G95_HUMAN_00184;A8MY43_HUMAN_00184;E9PF13_HUMAN_00184;H3BS02_HUMAN_001 1432 KHIEDEKLVRYFL wildtype peptide mitochondrial 84;H3BTL2_HUMAN_00175 [Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, 1433 PNDYFSKEASKLY wildtype peptide mitochondrial 1434 GSGSKGKGGEIQP wildtype peptide 10 kDa heat shock protein, mitochondrial 1435 ISSIEQKTERNEK wildtype peptide 14-3-3 protein beta/alpha Q4VY19_HUMAN_00070;1433B_HUMAN_00068 1436 ANTGESKVFYYKM wildtype peptide 14-3-3 protein epsilon 1437 LLSVAYKNVVGGR wildtype peptide 14-3-3 protein theta 1438 DLYHLIKKAVAVR wildtype peptide 40S ribosomal protein S13 H0YK46_HUMAN_00019;H0YN88_HUMAN_00019;RS17L_HUMAN_00019;H0YN73_HUMAN_0001 1439 ARVIIEKYYTRLG wildtype peptide 40S ribosomal protein S17 8;H3BNC9_HUMAN_00278 1440 ANGLDNKLREDLE wildtype peptide 40S ribosomal protein S18 1441 KETVFTKSPYQEF wildtype peptide 40S ribosomal protein S2 H0YEN5_HUMAN_00165;E9PQD7_HUMAN_00205

1442 GKATVPKTEIREK wildtype peptide 40S ribosomal protein S24 E7EPK6_HUMAN_00037;E7ETK0_HUMAN_00037;RS24_HUMAN_00037;RS24_HUMAN_00037 1443 KEVPNYKLITPAV wildtype peptide 40S ribosomal protein S25 RL10L_HUMAN_00121;F8W7C6_HUMAN_00070;H7C123_HUMAN_00031;H7C2C5_HUMAN_0003 1444 MRGAFGKPQGTVA wildtype peptide 60S ribosomal protein L10 1 1445 QTPVFSKARYTVR wildtype peptide 60S ribosomal protein L11 Q5VVC8_HUMAN_00050;Q5VVC9_HUMAN_00050;RL11_HUMAN_00051 1446 ASALIIKALKEPP wildtype peptide 60S ribosomal protein L12 1447 PHSAHQKYVRQAW wildtype peptide 60S ribosomal protein L14 B7Z6S8_HUMAN_00071;E7EPB3_HUMAN_00071 1448 DTQWITKPVHKHK wildtype peptide 60S ribosomal protein L15 1449 EERLQAKKEEIIK wildtype peptide 60S ribosomal protein L19

1450 LSGNKIKDLSTIE wildtype peptide Acidic leucine-rich nuclear phosphoprotein 32 family member D AN32A_HUMAN_00101;AN32C_HUMAN_00097;F2Z3H3_HUMAN_00101;H0YN26_HUMAN_00101 B4DEC3_HUMAN_00294;B4DW08_HUMAN_00284;A2A274_HUMAN_00598;F5H2A5_HUMAN_005 1451 LLEPFDKWDGKDL wildtype peptide Aconitate hydratase, mitochondrial 54 Acetylome - Acetyltransferase Microarray page 41 of 167

Sequence PEP_FLAG Protein name Uniprot IDs C9J4Z7_HUMAN_00044;C9J6C8_HUMAN_00044;C9JBJ7_HUMAN_00044;C9JEY1_HUMAN_0004 4;C9JFG9_HUMAN_00044;C9JQM8_HUMAN_00044;C9JTT6_HUMAN_00044;C9K057_HUMAN_00 1452 SGAKWTKVHELKE wildtype peptide Actin-related protein 2/3 complex subunit 1B 044;F8WCG3_HUMAN_00044 1453 KANVFFKNYEIKN wildtype peptide Actin-related protein 2/3 complex subunit 3 B4DM63_HUMAN_00056;C9JZD1_HUMAN_00056;F8VR50_HUMAN_00048 1454 VCPDLVKEFNKYD wildtype peptide Actin-related protein 3 B4DTI0_HUMAN_00111;B4DXW1_HUMAN_00189;F5H3P5_HUMAN_00178 1455 EMVLSGKYKSGEQ wildtype peptide Actin-related protein 6 F8VSD1_HUMAN_00178;F8W057_HUMAN_00260;G3V1Y1_HUMAN_00178 1456 KLVAIPKPTVPPS wildtype peptide AF4/FMR2 family member 4 C9JCE0_HUMAN_00079;AFF4_HUMAN_00079;AFF4_HUMAN_00079 1457 VNAVAQKQLGRLW wildtype peptide Alanine--glyoxylate aminotransferase 2, mitochondria 1458 VNGKWLKPEHRNS wildtype peptide Aldehyde dehydrogenase family 16 member A1 A16A1_HUMAN_00050;A16A1_HUMAN_00050 C9JMC5_HUMAN_00269;E7ERM4_HUMAN_00196;E9PNN6_HUMAN_00269;H0Y3F3_HUMAN_00 1459 KLKKSLKEFYGED wildtype peptide Aldehyde dehydrogenase, dimeric NADP-preferring 327 1460 VRKAFEKTLKDLK wildtype peptide Aldo-keto reductase family 1 member B10 AK1BF_HUMAN_00123;AK1BF_HUMAN_00095 1461 AFEKTLKDLKLSY wildtype peptide Aldo-keto reductase family 1 member B10 AK1BF_HUMAN_00126;AK1BF_HUMAN_00098 B4DVE7_HUMAN_00446;E9PDK5_HUMAN_00386;E9PDS7_HUMAN_00126;H0Y6E1_HUMAN_00 1462 YKRMYGKSLYHDI wildtype peptide Annexin A11 112 B3KRQ1_HUMAN_00035;H0YKS4_HUMAN_00152;H0YL33_HUMAN_00035;H0YM50_HUMAN_00 121;H0YMD0_HUMAN_00152;H0YMU9_HUMAN_00152;H0YN28_HUMAN_00035;H0YN42_HUMA N_00152;H0YN52_HUMAN_00035;H0YNA0_HUMAN_00035;H0YNP5_HUMAN_00087;H0YLE2_HU 1463 VYKEMYKTDLEKD wildtype peptide Annexin A2 MAN_00035;AXA2L_HUMAN_00152;ANXA2_HUMAN_00170 1464 SEVDMLKIRSEFK wildtype peptide Annexin A2 AXA2L_HUMAN_00302;ANXA2_HUMAN_00320 1465 FKRLYGKSLYSFI wildtype peptide Annexin A4 B4DDF9_HUMAN_00211;Q6P452_HUMAN_00273 1466 LTGKFEKLIVALM wildtype peptide Annexin A5 D6RBL5_HUMAN_00019;E7ENQ5_HUMAN_00079;E9PHT9_HUMAN_00079 A6NN80_HUMAN_00068;E5RI05_HUMAN_00068;E5RIU8_HUMAN_00068;E5RJF5_HUMAN_0003 6;E5RJR0_HUMAN_00068;E5RK63_HUMAN_00036;E5RK69_HUMAN_00068;E9PGK1_HUMAN_0 1467 YKSLYGKDLIADL wildtype peptide Annexin A6 0036;E5RFF0_HUMAN_00068 1468 GNAIDGKGPIGSK wildtype peptide ATP synthase subunit alpha, mitochondrial 1469 YFRDNGKHALIIY wildtype peptide ATP synthase subunit alpha, mitochondrial 1470 EPSKITKFENAFL wildtype peptide ATP synthase subunit alpha, mitochondrial 1471 DKLNEQKLAQLEE wildtype peptide ATP synthase subunit b, mitochondrial 1472 EKETIAKCIADLK wildtype peptide ATP synthase subunit b, mitochondrial 1473 VARGVQKILQDYK wildtype peptide ATP synthase subunit beta, mitochondrial F8VPV9_HUMAN_00415;F8VQY0_HUMAN_00129 1474 IDSWMGKGAAKLR wildtype peptide ATP-dependent DNA helicase Q1 1475 RNALIHKSSVNCP wildtype peptide ATP-dependent RNA helicase A 1476 AQVTQTKFLPNAP wildtype peptide ATP-dependent RNA helicase DDX1 B4DME8_HUMAN_00153;B4DPN6_HUMAN_00265 1477 AIHGKQKQNKRTT wildtype peptide ATP-dependent RNA helicase DDX18 F5H863_HUMAN_00199;H7C452_HUMAN_00124 1478 PPKKDIKGSYVSI wildtype peptide ATP-dependent RNA helicase DDX39A B1Q2N1_HUMAN_00035;Q8N5M0_HUMAN_00035 1479 NLIFRLKDLDFAS wildtype peptide ATP-dependent RNA helicase DDX55 Q8IYH0_HUMAN_00051;F5H5U2_HUMAN_00413 1480 RFQKELKEIQYGI wildtype peptide Branched-chain-amino-acid aminotransferase, mitochondrial B3KSI3_HUMAN_00337;BCAT2_HUMAN_00285 1481 QRTALWKAGFKGK wildtype peptide Brefeldin A-inhibited guanine nucleotide-exchange protein 1 E5RHL7_HUMAN_00546;E5RHZ1_HUMAN_00039;E5RIF2_HUMAN_01162 1482 NSKSPKKGLKTPK wildtype peptide Tyrosine-protein kinase BAZ1B B7ZLN5_HUMAN_00447;Q17RB6_HUMAN_00447;E9PI60_HUMAN_00447;E9PSF3_HUMAN_0044 1483 LKGVPKKSKMSLK wildtype peptide Bromodomain and PHD finger-containing protein 3 7;F6XDC4_HUMAN_00447;H0Y7B4_HUMAN_00420 B7ZLN5_HUMAN_00671;Q17RB6_HUMAN_00671;E9PI60_HUMAN_00671;E9PSF3_HUMAN_0067 1484 CMKYNAKDTIFHR wildtype peptide Bromodomain and PHD finger-containing protein 3 1;F5H264_HUMAN_00085 1485 RKESSVKTVRSTS wildtype peptide Bromodomain-containing protein 1 F5H6M9_HUMAN_00057;BRD1_HUMAN_00418 1486 LRPLVIKQEPREE wildtype peptide CCAAT/enhancer-binding protein alpha 1487 VELVAGKTYRWCV wildtype peptide CDGSH iron-sulfur domain-containing protein 3, mitochondrial 1488 TMQIFVKTLTGKT wildtype peptide Ubiquitin C variant 1489 VPDQRSKFENEEF wildtype peptide Core-binding factor subunit beta H3BSC0_HUMAN_00011;PEBB_HUMAN_00011 1490 QKKTKVKKKTSNP wildtype peptide Ras GTPase-activating protein 2 Acetylome - Acetyltransferase Microarray page 42 of 167

Sequence PEP_FLAG Protein name Uniprot IDs F5GXD8_HUMAN_00068;F5H0T1_HUMAN_00068;F5H783_HUMAN_00068;G3XAD8_HUMAN_001 1491 CKTVDLKPDWGKG wildtype peptide Stress-induced-phosphoprotein 1 15 ATAT_HUMAN_00221;ATAT_HUMAN_00210;ATAT_HUMAN_00233;ATAT_HUMAN_00233;ATAT_ 1492 RAEGDIKPYSSSD wildtype peptide Alpha-tubulin N-acetyltransferase HUMAN_00210;ATAT_HUMAN_00210 1493 KLVEQLKEERELL wildtype peptide Luc7-like protein 3 B4DJ96_HUMAN_00090;F5H1W9_HUMAN_00166 1494 QREFALKHLPNDP wildtype peptide Citrate synthase, mitochondrial B4DJV2_HUMAN_00353;H0YIC4_HUMAN_00039 1495 YNENLSKYCIRKE wildtype peptide Citron Rho-interacting kinase H7BYJ3_HUMAN_01334;CTRO_HUMAN_01239;CTRO_HUMAN_01763 1496 EKRNRLKLLLPWL wildtype peptide Clathrin heavy chain 2 CLH1_HUMAN_00856;CLH2_HUMAN_00856;CLH1_HUMAN_00856 1497 KIVLYAKKVGYTP wildtype peptide Clathrin heavy chain 2 CLH1_HUMAN_00506;CLH2_HUMAN_00506;CLH1_HUMAN_00506 1498 VVKMILKLLEDKN wildtype peptide Cullin-associated NEDD8-dissociated protein 1 F5H6I6_HUMAN_00031;CAND1_HUMAN_00055 1499 SAKVSLKEYRAKH wildtype peptide Cyclin-T1 B3KVC9_HUMAN_00089;E9PND2_HUMAN_00075;E9PP21_HUMAN_00079;E9PS42_HUMAN_001 1500 ASKFAQKIGGSER wildtype peptide Cysteine and glycine-rich protein 1 12 1501 KVYFAEKVTSLGK wildtype peptide Cysteine-rich protein 2 B7Z6C0_HUMAN_00212;H0YFA4_HUMAN_00122 1502 PGSALEKEVESMG wildtype peptide Cytochrome b-c1 complex subunit 1, mitochondrial 1503 LGLSGAKANYRGG wildtype peptide Cytochrome b-c1 complex subunit 2, mitochondrial H3BRG4_HUMAN_00250;H3BSJ9_HUMAN_00250 Dihydrolipoyllysine-residue acetyltransferase component of E7ESJ9_HUMAN_00247;E9PEJ4_HUMAN_00361;F5H7M3_HUMAN_00237;H0YDD4_HUMAN_002 1504 VRKELNKILEGRS wildtype peptide pyruvate dehydrogenase complex, mitochondrial 98 1505 RLGVVEKKKINNN wildtype peptide Dihydroxyacetone phosphate acyltransferase 1506 TYEQANKIYDKAM wildtype peptide Disks large homolog 3 Q5JUW8_HUMAN_00797;DLG3_HUMAN_00460;DLG3_HUMAN_00314 F5GX68_HUMAN_01113;H0YFC7_HUMAN_00981;DNMT1_HUMAN_01129;DNMT1_HUMAN_0077 1507 GNKGKGKGKGKGK wildtype peptide DNA (cytosine-5)-methyltransferase 1 7 F5GX68_HUMAN_01111;H0YFC7_HUMAN_00979;DNMT1_HUMAN_01127;DNMT1_HUMAN_0077 1508 SPGNKGKGKGKGK wildtype peptide DNA (cytosine-5)-methyltransferase 1 5 1509 LLPGVIKTVYNLN wildtype peptide DNA ligase 3 1510 GQIMAVKRIRATV wildtype peptide Dual specificity mitogen-activated protein kinase kinase 6 A8K1B6_HUMAN_00594;E9PEQ4_HUMAN_00598;F5H4R9_HUMAN_00598;F5H722_HUMAN_002 1511 EQRNVYKDLRQIE wildtype peptide Dynamin-2 05;DYN2_HUMAN_00594 1512 AVLAAAKSKLLKT wildtype peptide Dynein heavy chain 5, axonemal A6NFV8_HUMAN_00031;D6RCT8_HUMAN_00031;F5GY46_HUMAN_00031;DTBP1_HUMAN_0003 1513 DKSREAKVKSKPR wildtype peptide Dysbindin 1 1514 SPAHPAKLRAQTT wildtype peptide E1A-binding protein p400 EP400_HUMAN_01517;EP400_HUMAN_01480;EP400_HUMAN_01516 1515 PPGKSGKYYYQLN wildtype peptide E3 SUMO-protein ligase CBX4 1516 LLVQPTKRPEGRT wildtype peptide Enhancer of rudimentary homolog 1517 EYYAAHKYATSNK wildtype peptide Erlin-1 1518 VEPASEKDPESLR wildtype peptide ETS translocation variant 3 IF4A2_HUMAN_00292;B4DKP9_HUMAN_00114;Q9NZE6_HUMAN_00197;E7EQG2_HUMAN_0029 1519 VDWLTEKMHARDF wildtype peptide Eukaryotic initiation factor 4A-I 2;IF4A2_HUMAN_00293 Eukaryotic peptide chain release factor GTP-binding subunit ERF3B_HUMAN_00237;F5GWG9_HUMAN_00154;H3BR35_HUMAN_00114;H3BSV8_HUMAN_001 1520 DKRTLEKYEREAK wildtype peptide ERF3A 39;ERF3A_HUMAN_00245 1521 ELSLLEKSLGLSK wildtype peptide Eukaryotic translation elongation factor 1 epsilon-1 C9J1V9_HUMAN_00012;C9JLK5_HUMAN_00012;D6RBD7_HUMAN_00012 1522 GKRRKGKGKGKAR wildtype peptide F-box and WD-40 domain protein 4, isoform CRA_b 1523 TSEVFNKFFKERV wildtype peptide FACT complex subunit SPT16 1524 FKNFIEKVEALTK wildtype peptide FACT complex subunit SPT16 1525 DVVKKQKPELLNK wildtype peptide FACT complex subunit SPT16 1526 GKTFDYKIPYTTV wildtype peptide FACT complex subunit SSRP1 E9PMD4_HUMAN_00136;E9PPZ7_HUMAN_00136 1527 IHEVHVKMDRSLE wildtype peptide FAD-dependent oxidoreductase domain-containing protein 1 B4DXM1_HUMAN_00102;FXRD1_HUMAN_00061;FXRD1_HUMAN_00258 1528 IAKTAHKNGSTLK wildtype peptide Fumarate hydratase, mitochondrial 1529 PPSLGNKPVLPLI wildtype peptide G patch domain-containing protein 8 Acetylome - Acetyltransferase Microarray page 43 of 167

Sequence PEP_FLAG Protein name Uniprot IDs D3DUZ3_HUMAN_00218;E7EPR3_HUMAN_00162;H3BLV7_HUMAN_00158;H3BR65_HUMAN_00 1530 KVLSTTKPFEYET wildtype peptide Gamma-interferon-inducible protein 16 056;H3BR88_HUMAN_00056;IF16_HUMAN_00214;IF16_HUMAN_00214 1531 VFSVKEKSQRQKI wildtype peptide GC-rich sequence DNA-binding factor 1 GCFC1_HUMAN_00280;GCFC1_HUMAN_00280;GCFC1_HUMAN_00280 1532 VPRRTLKMIQPSA wildtype peptide Geminin C9K0U5_HUMAN_00027;E2QRF9_HUMAN_00027;H7C608_HUMAN_00027 1533 LSQQWAKASGRGE wildtype peptide General transcription factor IIF subunit 2 1534 ZMEAIAKYDFKAT wildtype peptide Growth factor receptor-bound protein 2 1535 IQKVFTKHGLLKL wildtype peptide GrpE protein homolog 1, mitochondrial 1536 DTAGQEKFGGLRD wildtype peptide GTP-binding nuclear protein Ran B5MDF5_HUMAN_00071;F5H018_HUMAN_00067;H0YFC6_HUMAN_00086 1537 TGEFEKKYVATLG wildtype peptide GTP-binding nuclear protein Ran B5MDF5_HUMAN_00038;F5H018_HUMAN_00034;H0YFC6_HUMAN_00053 1538 REEYEEKIRKLED wildtype peptide GTPase IMAP family member 4 B4DWN0_HUMAN_00194;G5E9W9_HUMAN_00276 D6R9L0_HUMAN_00178;D6R9Z1_HUMAN_00116;D6RAU2_HUMAN_00130;D6RBD0_HUMAN_00 106;D6RDF4_HUMAN_00130;D6RFX4_HUMAN_00089;D6RFZ9_HUMAN_00170;D6RHH4_HUMAN _00130;E9PD14_HUMAN_00130;H0Y8W2_HUMAN_00061;H0YAF8_HUMAN_00048;H0YAM7_HU 1539 SRDKTIKLWNTLG wildtype peptide Guanine nucleotide-binding protein subunit beta-2-like 1 MAN_00037 D6R9P3_HUMAN_00266;D6RBZ0_HUMAN_00313;D6RD18_HUMAN_00269;ROAA_HUMAN_0031 1540 GSTNYGKSQRRGG wildtype peptide Heterogeneous nuclear ribonucleoprotein A/B 8;ROAA_HUMAN_00271;ROAA_HUMAN_00272 F8VRQ1_HUMAN_00285;F8VXY0_HUMAN_00282;F8W6I7_HUMAN_00298;H0YH80_HUMAN_001 1541 GGQYFAKPRNQGG wildtype peptide Heterogeneous nuclear ribonucleoprotein A1 69;ROA1_HUMAN_00298;ROA1_HUMAN_00245

1542 YFEKYGKIETIEV wildtype peptide Heterogeneous nuclear ribonucleoprotein A3 B4DDB6_HUMAN_00129;E7ERJ4_HUMAN_00129;E7EWI9_HUMAN_00129;ROA3_HUMAN_00129 B4DTC3_HUMAN_00199;F5H6R6_HUMAN_00097;H0Y8G5_HUMAN_00184;H0YA96_HUMAN_001 55;H7BXN2_HUMAN_00226;HNRPD_HUMAN_00232;HNRPD_HUMAN_00251;HNRPD_HUMAN_0 1543 HNVGLSKCEIKVA wildtype peptide Heterogeneous nuclear ribonucleoprotein D0 0232 1544 RYIGIVKQAGLER wildtype peptide Heterogeneous nuclear ribonucleoprotein F 1545 DGSCSYKDFSESR wildtype peptide Heterogeneous nuclear ribonucleoprotein L 1546 KVQSKNKYLHSPE wildtype peptide Histone acetyltransferase KAT6B KAT6B_HUMAN_00861;KAT6B_HUMAN_00752 1547 MDLSTIKRKLDTG wildtype peptide Histone acetyltransferase p300 CBP_HUMAN_01139;Q4LE28_HUMAN_01169 1548 SPFAMDKKAVPGG wildtype peptide Histone acetyltransferase p300 1549 GDSKNAKKKNNKK wildtype peptide Histone acetyltransferase p300 CBP_HUMAN_01586;Q4LE28_HUMAN_01616 1550 KKKNNKKTSKNKS wildtype peptide Histone acetyltransferase p300 1551 ATMEKHKEVFFVI wildtype peptide Histone acetyltransferase p300 CBP_HUMAN_01629;Q4LE28_HUMAN_01659 1552 PKKGSKKAINKAQ wildtype peptide Histone H2B type 1-M 1553 PKKGSKKAVTKVQ wildtype peptide Histone H2B type 2-F B4DR52_HUMAN_00017;H2B2F_HUMAN_00017 H2BFS_HUMAN_00035;H2B1D_HUMAN_00035;H2B1C_HUMAN_00035;H2B2F_HUMAN_00035;H 2B1H_HUMAN_00035;H2B1N_HUMAN_00035;H2B1M_HUMAN_00035;H2B1L_HUMAN_00035;B4 1554 KRKRSRKESYSVY wildtype peptide Histone H2B type 1-K DR52_HUMAN_00035;H2B2F_HUMAN_00035 1555 RKQLATKAARKST wildtype peptide Histone H3.3C H33_HUMAN_00010;H31T_HUMAN_00010;H3C_HUMAN_00010;H32_HUMAN_00010;B4DEB1_H 1556 TKQTARKSTGGKA wildtype peptide Histone H3.1 UMAN_00010;Q5TEC6_HUMAN_00010 H33_HUMAN_00019;H3C_HUMAN_00019;H32_HUMAN_00019;B4DEB1_HUMAN_00019;Q5TEC6 1557 GGKAPRKQLATKA wildtype peptide Histone H3.1 _HUMAN_00019 1558 DHIPEKKFKSEAL wildtype peptide Inhibitor of growth protein 3 ING4_HUMAN_00145;ING4_HUMAN_00122;ING4_HUMAN_00142;ING4_HUMAN_00143;ING4_HU 1559 AARARSKGKNSDE wildtype peptide Inhibitor of growth protein 4 MAN_00145;ING4_HUMAN_00143;ING4_HUMAN_00146 1560 SSSSKGKKSRTQK wildtype peptide Isoform 2 of Inhibitor of growth protein 4 ING4_HUMAN_00159;ING4_HUMAN_00136;ING4_HUMAN_00156;ING4_HUMAN_00157;ING4_HU 1561 APKTAQKKLKLVR wildtype peptide Inhibitor of growth protein 4 MAN_00159;ING4_HUMAN_00157;ING4_HUMAN_00160 1562 EADLKDKMEGSDF wildtype peptide Inhibitor of growth protein 5 E9PEN0_HUMAN_00114;ING5_HUMAN_00114 D6R967_HUMAN_00143;E2QRM6_HUMAN_00198;F8WDN9_HUMAN_00114;H0Y9D8_HUMAN_00 1563 NDPEASKFHDIDD wildtype peptide Inorganic pyrophosphatase 2, mitochondrial 195;IPYR2_HUMAN_00231;IPYR2_HUMAN_00187 Acetylome - Acetyltransferase Microarray page 44 of 167

Sequence PEP_FLAG Protein name Uniprot IDs F8VXB4_HUMAN_00235;F8VP67_HUMAN_00090;F8VU64_HUMAN_00207;F8VUG2_HUMAN_002 1564 DEAYMNKVELESR wildtype peptide Keratin, type II cytoskeletal 8 07;F8W1U3_HUMAN_00247;H0YIB2_HUMAN_00037 KH domain-containing, RNA-binding, signal transduction- 1565 KFNFVGKILGPQG wildtype peptide associated protein 1 E7ET98_HUMAN_00151;KHDR1_HUMAN_00150 G3V2W2_HUMAN_00140;MRRP3_HUMAN_00496;MRRP3_HUMAN_00140;MRRP3_HUMAN_0041 1566 ACLPDAKTQRLFF wildtype peptide Mitochondrial ribonuclease P protein 3 7 1567 EVNRGDKYIAKFQ wildtype peptide Kinesin-1 heavy chain C9JKA9_HUMAN_00644;H7BYN9_HUMAN_01008;KIF15_HUMAN_00912;KIF15_HUMAN_00057;K 1568 ETIDTLKQELKDI wildtype peptide Kinesin-like protein KIF15 F15_HUMAN_01009 1569 RRSWARKRQAAHT wildtype peptide Krueppel-like factor 1 1570 LKAYVEKFSYKSI wildtype peptide Leukotriene A-4 hydrolase F8VV40_HUMAN_00390;LKHA4_HUMAN_00414;LKHA4_HUMAN_00390 1571 KMTLNMKNYKGYE wildtype peptide LIM and SH3 domain protein 1 B4DIC4_HUMAN_00042;C9JVR8_HUMAN_00042;LASP1_HUMAN_00042

1572 EDPNFKKIDPKIL wildtype peptide Lipopolysaccharide-responsive and beige-like anchor protein E9PEM5_HUMAN_02106;F5H1X8_HUMAN_02106;H0YAC6_HUMAN_00759;LRBA_HUMAN_02106 B7Z3Z9_HUMAN_00372;B7Z452_HUMAN_00543;E7EPM6_HUMAN_00509;H0Y9U7_HUMAN_001 1573 HTGDIGKWLPNGT wildtype peptide Long-chain-fatty-acid--CoA ligase 1 39;ACSL1_HUMAN_00533 1574 CRAFLEKAHZZZZ wildtype peptide Low molecular weight phosphotyrosine protein phosphatase PPAC_HUMAN_00156;PPAC_HUMAN_00122 1575 QQESLNKWKSKGR wildtype peptide Lupus La protein 1576 QLFWEKKLSGLNA wildtype peptide Methyl-CpG-binding domain protein 3 Methylmalonate-semialdehyde dehydrogenase [acylating], 1577 LVGEAKKWLPELV wildtype peptide mitochondrial 1578 FYRLTRKVFANPE wildtype peptide Microsomal glutathione S-transferase 1 F5H6X2_HUMAN_00042;F5H7F6_HUMAN_00042;G5EA53_HUMAN_00042 F5GZL7_HUMAN_04122;F8W8Q1_HUMAN_04252;H0Y390_HUMAN_03256;H3BPE1_HUMAN_063 11;H3BQK9_HUMAN_06348;MACF1_HUMAN_04252;MACF1_HUMAN_04196;MACF1_HUMAN_04 1579 WENLGEKIAHRQH wildtype peptide Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 122;MACF1_HUMAN_04754 1580 RDFYFGKLREIEL wildtype peptide Microtubule-associated protein RP/EB family member 2 E9PHR3_HUMAN_00259;F5H1V8_HUMAN_00218;G5E9I6_HUMAN_00228 1581 ASSGESKYTGTLD wildtype peptide Mitochondrial carnitine/acylcarnitine carrier protein B4DWZ5_HUMAN_00098;C9JPE1_HUMAN_00075 F8W966_HUMAN_00280;F6XG23_HUMAN_00212;MEF2A_HUMAN_00280;MEF2A_HUMAN_0028 2;MEF2A_HUMAN_00280;MEF2A_HUMAN_00282;MEF2A_HUMAN_00280;MEF2A_HUMAN_0021 1582 VIPPSSKGMMPPL wildtype peptide Myocyte-specific enhancer factor 2A 2 C9JMZ0_HUMAN_00237;D6R9J8_HUMAN_00239;D6RAH2_HUMAN_00239;D6RJG6_HUMAN_002 39;F8W7V7_HUMAN_00257;MEF2C_HUMAN_00239;MEF2C_HUMAN_00239;MEF2C_HUMAN_00 1583 NKNMQAKSPPPMN wildtype peptide Myocyte-specific enhancer factor 2C 191 1584 SPLLEDKYRRASE wildtype peptide Myocyte-specific enhancer factor 2D Q05BX2_HUMAN_00116;MEF2D_HUMAN_00116 Q5T9U4_HUMAN_00278;MEF2D_HUMAN_00278;MEF2D_HUMAN_00233;MEF2D_HUMAN_00279 1585 ITSQAGKGLMHHL wildtype peptide Myocyte-specific enhancer factor 2D ;MEF2D_HUMAN_00278;MEF2D_HUMAN_00233

1586 LVHRINKALDRTK wildtype peptide Myosin-10 F8VTL3_HUMAN_00452;F8W6L6_HUMAN_00458;MYH10_HUMAN_00458;MYH10_HUMAN_00442 1587 AQQAADKYLYVDK wildtype peptide Myosin-9 Q5BKV1_HUMAN_00008;B1AH99_HUMAN_00008 C9IZ93_HUMAN_00007;C9J212_HUMAN_00007;C9J9P8_HUMAN_00007;C9JF62_HUMAN_00007 C9JFD2_HUMAN_00007;C9JSK8_HUMAN_00007;F2Z363_HUMAN_00007;F8WB39_HUMAN_000 07;F8WD80_HUMAN_00007;F8WDQ9_HUMAN_00007;F8WFB7_HUMAN_00007;G5E9R6_HUMA N_00007;H3BSR4_HUMAN_00007;H3BUI7_HUMAN_00007;UBE2F_HUMAN_00007;UBE2F_HUM 1588 MLTLASKLKRDDG wildtype peptide NEDD8-conjugating enzyme UBE2F AN_00007;UBE2F_HUMAN_00007;UBE2F_HUMAN_00007 H3BMX9_HUMAN_00139;H3BNK9_HUMAN_00039;H3BP64_HUMAN_00139;H3BU93_HUMAN_00 1589 EKKLTVKPIETKN wildtype peptide Protein FAM192A 062;H3BUL4_HUMAN_00139 1590 LSDNILKLEKQIN wildtype peptide Nesprin-2 F8WAA3_HUMAN_00955;G3V5X4_HUMAN_00955;SYNE2_HUMAN_00955 1591 PKMKMPKFSMPGF wildtype peptide Neuroblast differentiation-associated protein AHNAK 1592 RPYGSDKPWPSLL wildtype peptide NF-kappa-B-activating protein 1593 LGSESAKIKAMGI wildtype peptide Nipped-B-like protein Acetylome - Acetyltransferase Microarray page 45 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1594 VHNDVSKFNTQNY wildtype peptide Nuclear receptor-interacting protein 1 1595 LSEVANKFAKATG wildtype peptide Nucleolar and coiled-body phosphoprotein 1 NOLC1_HUMAN_00033;NOLC1_HUMAN_00033 1596 GQINIAKNLVDNV wildtype peptide Nucleolar GTP-binding protein 1 B7Z7A3_HUMAN_00056;Q5T3R7_HUMAN_00056 1597 TEKKAKKAKIKVK wildtype peptide Nucleolar protein 58 1598 CKGHFAKDCFMQP wildtype peptide Nucleolar protein of 40 kDa B4DY38_HUMAN_00136;NO40_HUMAN_00120 Q9BQ02_HUMAN_00116;C9J1H7_HUMAN_00100;C9JLB1_HUMAN_00100;C9JWL1_HUMAN_001 1599 KGATPGKALVATP wildtype peptide Nucleolin 00;C9JYW2_HUMAN_00100 1600 REARLDKVLSDMK wildtype peptide PAXIP1-associated protein 1 1601 ALSTGEKGFGYKG wildtype peptide Peptidyl-prolyl cis-trans isomerase A B4DM82_HUMAN_00044;C9J5S7_HUMAN_00044;F8WE65_HUMAN_00044 1602 TEWLDGKHVVFGK wildtype peptide Peptidyl-prolyl cis-trans isomerase A B4DM82_HUMAN_00089;Q567Q0_HUMAN_00065 Q1JUQ5_HUMAN_00037;Q5W0X3_HUMAN_00048;A8MSS1_HUMAN_00037;Q5VVH2_HUMAN_0 1603 FKFMLGKQEVIRG wildtype peptide Peptidyl-prolyl cis-trans isomerase FKBP1A 0053 1604 FRQGVGKYINPAA wildtype peptide Peptidyl-prolyl cis-trans isomerase-like 2 H7C2D2_HUMAN_00262;PPIL2_HUMAN_00482 1605 MSSRHFKPEIRVT wildtype peptide Periodic tryptophan protein 2 homolog 1606 GVPMPDKYSLEPV wildtype peptide Phosphoglycerate kinase 1 1607 VKAEPAKIEAFRA wildtype peptide Phosphoglycerate kinase 1 B4E1H9_HUMAN_00056;B7Z7A9_HUMAN_00118 B4DHM5_HUMAN_00148;B4E1H9_HUMAN_00233;B7Z7A9_HUMAN_00295;E7ERH5_HUMAN_00 1608 GPESSKKYAEAVT wildtype peptide Phosphoglycerate kinase 1 187 1609 EGAKIVKDIMAKA wildtype peptide Phosphoglycerate kinase 2 1610 ZZMAAYKLVLIRH wildtype peptide Phosphoglycerate mutase 1 PGAM4_HUMAN_00007;F2Z2J9_HUMAN_00007 1611 PPVSHWKPEAVQY wildtype peptide Serine/threonine-protein phosphatase PGAM5, mitochondrial F5GXG4_HUMAN_00042;PGAM5_HUMAN_00191 E9PHJ7_HUMAN_00065;F5H578_HUMAN_00196;F8W9L2_HUMAN_00196;H0YG38_HUMAN_001 1612 YKSDSGKPYYYNS wildtype peptide Pre-mRNA-processing factor 40 homolog A 89;H7C2N3_HUMAN_00122;PR40A_HUMAN_00169;PR40A_HUMAN_00196 1613 RAAYFEKNHGTRE wildtype peptide Pre-mRNA-processing factor 6

1614 DRSVRGKYSDDTP wildtype peptide Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 1615 NDPVADKLLKRAS wildtype peptide Pre-mRNA-splicing factor RBM22 F5GWK3_HUMAN_00163;RBM22_HUMAN_00163 1616 KIDFLTKQMEKIQ wildtype peptide Prefoldin subunit 5 H3BMQ1_HUMAN_00042;H3BPF6_HUMAN_00110;PFD5_HUMAN_00067 1617 FINTYNKTDVAAP wildtype peptide Mitochondrial 10-formyltetrahydrofolate dehydrogenase 1618 SVRIIDKNGIHDL wildtype peptide Proteasome subunit beta type-2 1619 GVSAPGKSIEASV wildtype peptide Protein AHNAK2 1620 FNWDKEKLMERYF wildtype peptide E3 ubiquitin-protein ligase ARIH1 1621 CRVPKSKLEVGRI wildtype peptide Protein BUD31 homolog C9JCD9_HUMAN_00084;C9JNV2_HUMAN_00096 1622 KPKGTFKDYVRDR wildtype peptide Protein C-ets-1 F5GYX9_HUMAN_00089;ETS1_HUMAN_00349 1623 PTDEELKETIKKL wildtype peptide Protein DEK B4DFG0_HUMAN_00298;H0Y993_HUMAN_00102;DEK_HUMAN_00292

1624 RQPFFQKRSELIA wildtype peptide Protein SET A6NGV1_HUMAN_00059;Q5VXV2_HUMAN_00061;B2REB8_HUMAN_00058;SET_HUMAN_00070 1625 AAKVSKKELNSNH wildtype peptide Isoform 2 of Protein SET H7C1M2_HUMAN_01050;H7C2G8_HUMAN_00116;SON_HUMAN_02055;SON_HUMAN_01736;SO N_HUMAN_02055;SON_HUMAN_02055;SON_HUMAN_02055;SON_HUMAN_02055;SON_HUMAN 1626 RLTDLDKAQLLEI wildtype peptide Protein SON _02015;SON_HUMAN_02095 1627 KTAILVKEVNPKK wildtype peptide Protein strawberry notch homolog 1 SBNO1_HUMAN_01221;SBNO1_HUMAN_01220 1628 WTFAKVKEFKSKL wildtype peptide Protein TMED8 1629 SWHDIEKDNARFM wildtype peptide Protein transport protein Sec23B A7YIJ8_HUMAN_00079;A7YIK0_HUMAN_00047;E9PNV3_HUMAN_00068;E9PQ82_HUMAN_0006 1630 ENPLQFKFRAKFF wildtype peptide Radixin 8;H7BZI4_HUMAN_00079 1631 EKIEREKEELMER wildtype peptide Moesin 1632 LLKSEDKVKAIAN wildtype peptide Ran GTPase-activating protein 1 B3KUP2_HUMAN_00060;C9JGV6_HUMAN_00100;C9JXG8_HUMAN_00100;H7C137_HUMAN_000 1633 NAENAQKFKTKFE wildtype peptide Ran-specific GTPase-activating protein 77 Acetylome - Acetyltransferase Microarray page 46 of 167

Sequence PEP_FLAG Protein name Uniprot IDs

1634 AEYACYKAEKFAK wildtype peptide Rap1 GTPase-activating protein 1 F2Z357_HUMAN_00378;G3V1A7_HUMAN_00378;RPGP1_HUMAN_00378;RPGP1_HUMAN_00408 1635 RINSGGKLPNFGF wildtype peptide Ras GTPase-activating protein-binding protein 1 F5H4D6_HUMAN_00194;F8W7N6_HUMAN_00218 1636 VDKSGMKSIDTFF wildtype peptide Ribonuclease H2 subunit B 1637 ERVMFDKITSRIQ wildtype peptide Ribonucleoside-diphosphate reductase large subunit H0YFI0_HUMAN_00011;E9PJ62_HUMAN_00017;E9PRY9_HUMAN_00017 1638 MDIEALKKLNKNK wildtype peptide 60S ribosomal protein L10a 1639 KNFFLSKIRSHVA wildtype peptide RING finger protein 114 C9JU49_HUMAN_00102;RN114_HUMAN_00102 1640 ARFALQKLEEAKK wildtype peptide RNA polymerase II-associated protein 3 1641 QIRFLYKDENRTR wildtype peptide RNA-binding protein 12B 1642 NQEVAVKIIRNNE wildtype peptide Serine/threonine-protein kinase PRP4 homolog F5H2U2_HUMAN_00703;H0YDJ3_HUMAN_00297;H0YEC8_HUMAN_00221 1643 KLIVAGKYSKEFF wildtype peptide SRSF protein kinase 1 H3BLV9_HUMAN_00601;SRPK1_HUMAN_00756 1644 TAPSHAKFRSTGL wildtype peptide Serine/threonine-protein phosphatase 1 regulatory subunit 10 Serine/threonine-protein phosphatase 2A catalytic subunit alpha 1645 ZZZMDEKVFTKEL wildtype peptide isoform 1646 KRLRFDKEGEVRE wildtype peptide Serine/threonine-protein phosphatase 4 regulatory subunit 2 H7C559_HUMAN_00084;PP4R2_HUMAN_00195;PP4R2_HUMAN_00196

Serine/threonine-protein phosphatase PP1-gamma catalytic PP1A_HUMAN_00147;A6NNR3_HUMAN_00103;E9PDP1_HUMAN_00244;F8VR82_HUMAN_00147 1647 KRRYNIKLWKTFT wildtype peptide subunit ;F8VYE8_HUMAN_00147;F8W0W8_HUMAN_00156;PP1G_HUMAN_00147;PP1A_HUMAN_00158 1648 RFSLFGKKKZZZZ wildtype peptide Spectrin beta chain, brain 1 B2ZZ89_HUMAN_02362;D6W5C0_HUMAN_02276 1649 DLIDFDKLKDSNA wildtype peptide Spectrin beta chain, erythrocyte Q59FP5_HUMAN_00228;SPTB1_HUMAN_00224;SPTB1_HUMAN_00224

B4DM23_HUMAN_00249;B4DQ31_HUMAN_00241;B4DWK7_HUMAN_00164;B4E0L6_HUMAN_00 136;E7ESA2_HUMAN_00398;G8JLC4_HUMAN_00358;H7BXF4_HUMAN_00471;H7C0W5_HUMAN _00097;H7C1Q6_HUMAN_00375;H7C235_HUMAN_00036;H7C2E2_HUMAN_00242;H7C2J2_HUM 1650 TDLVSPKHALMVF wildtype peptide Sphingomyelin phosphodiesterase 4 AN_00182;NSMA3_HUMAN_00432;NSMA3_HUMAN_00369;NSMA3_HUMAN_00507

DX39B_HUMAN_00053;B1Q2N1_HUMAN_00052;Q5STU3_HUMAN_00053;Q8N5M0_HUMAN_000 52;E7EMX2_HUMAN_00053;F6QWI5_HUMAN_00053;F6QYI9_HUMAN_00076;F6R6M7_HUMAN_0 0053;F6S2B7_HUMAN_00053;F6S4E6_HUMAN_00053;F6SXL5_HUMAN_00068;F6TRA5_HUMAN _00053;F6U6E2_HUMAN_00053;F6UN21_HUMAN_00053;F6V772_HUMAN_00076;F6WLT2_HUM 1651 FRDFLLKPELLRA wildtype peptide ATP-dependent RNA helicase DDX39A AN_00053;F8VQ10_HUMAN_00053;F8VZL8_HUMAN_00053;DX39B_HUMAN_00053 1652 NRLKQIKEFHRKH wildtype peptide Splicing factor 3A subunit 3 1653 IDRILYKLDDLVR wildtype peptide Splicing factor 3B subunit 1 1654 AASILTKFQELKD wildtype peptide Structural maintenance of chromosomes protein 2 1655 SAFDLKKKNLACE wildtype peptide Structural maintenance of chromosomes protein 2 F5GZR0_HUMAN_00321;SMC2_HUMAN_00321 1656 ELAQYQKWDKMRR wildtype peptide Structural maintenance of chromosomes protein 3

1657 KLNKITKFIEENK wildtype peptide Structural maintenance of chromosomes protein 4 E9PD53_HUMAN_00356;C9JR83_HUMAN_00381;E7ET04_HUMAN_00381;SMC4_HUMAN_00381 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, 1658 FGGQSLKFGKGGQ wildtype peptide mitochondrial D6RFM5_HUMAN_00179;E9PBJ5_HUMAN_00131 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, 1659 LQEGCGKISKLYG wildtype peptide mitochondrial E9PBJ5_HUMAN_00490;E9PEF8_HUMAN_00393 1660 KFTFIEKCNNPRS wildtype peptide T-complex protein 1 subunit zeta B4DPJ8_HUMAN_00334;A6NCD2_HUMAN_00320 1661 HFLNKMKIMVIKD wildtype peptide T-complex protein 1 subunit delta B7Z2F4_HUMAN_00171;B7Z9L0_HUMAN_00265;F5H5W3_HUMAN_00291 TATA box-binding protein-associated factor RNA polymerase I 1662 YYSFVDKPVAYKK wildtype peptide subunit B TAF1B_HUMAN_00440;TAF1B_HUMAN_00185 1663 ANEKALKQKGITV wildtype peptide TBC1 domain family member 24 H3BQ06_HUMAN_00312;TBC24_HUMAN_00312 1664 REGTFSKSDSEKI wildtype peptide Telomere-associated protein RIF1 H3BR06_HUMAN_00094;H3BR37_HUMAN_00070;H3BTA7_HUMAN_00052;TERF2_HUMAN_0017 1665 KNKEFEKASKILK wildtype peptide Telomeric repeat-binding factor 2 3 Acetylome - Acetyltransferase Microarray page 47 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1666 AASCRVKRVTQKE wildtype peptide Transcription factor MafG 1667 RSDHLSKHIKTHQ wildtype peptide Transcription factor Sp1 D6RGK3_HUMAN_00007;D6RHW1_HUMAN_00007;D6RIE8_HUMAN_00007;D6RIV9_HUMAN_00 1668 ZZMESGKTASPKS wildtype peptide Transcription initiation factor TFIID subunit 9 007;D6RIY1_HUMAN_00007 1669 TMTKIQKHQEHIL wildtype peptide Transcription intermediary factor 1-beta 1670 FGHTFCKYSEEMK wildtype peptide Transcriptional activator protein Pur-alpha F8WDE0_HUMAN_00733;ATRX_HUMAN_00602;ATRX_HUMAN_00689;ATRX_HUMAN_00768;AT 1671 SSIISKKKRQTQS wildtype peptide Transcriptional regulator ATRX RX_HUMAN_00651;ATRX_HUMAN_00738 1672 PHQYSLKLEKGDY wildtype peptide Tripeptidyl-peptidase 2 1673 GRGGCYKHTFYGI wildtype peptide tRNA wybutosine-synthesizing protein 1 homolog TPM2_HUMAN_00251;Q5TCU3_HUMAN_00251;Q5TCU8_HUMAN_00251;Q5VU58_HUMAN_0021 5;Q5VU59_HUMAN_00199;Q5VU61_HUMAN_00191;Q5VU63_HUMAN_00125;Q5VU66_HUMAN_0 0215;Q5VU72_HUMAN_00215;Q8NAG3_HUMAN_00150;TPM3_HUMAN_00215;TPM3_HUMAN_00 1674 SVAKLEKTIDDLE wildtype peptide Tropomyosin alpha-3 chain 215;TPM2_HUMAN_00251;TPM2_HUMAN_00215 1675 YSEKEDKYEEEIK wildtype peptide Tropomyosin alpha-4 chain 1676 FDLMYAKRAFLHW wildtype peptide Tubulin alpha chain-like 3 TBA4A_HUMAN_00163;TBA3C_HUMAN_00163;TBA1A_HUMAN_00163;TBA1C_HUMAN_00163;A 8MUB1_HUMAN_00148;C9JJQ8_HUMAN_00186;C9JQ00_HUMAN_00148;F5H5D3_HUMAN_0023 3;F8VQQ4_HUMAN_00128;G3V1U9_HUMAN_00128;C9JDS9_HUMAN_00010;F8VXZ4_HUMAN_0 1677 LSVDYGKKSKLEF wildtype peptide Tubulin alpha-1B chain 0010;TBA3C_HUMAN_00163 1678 PDKYPFKSPSIGF wildtype peptide Ubiquitin-conjugating enzyme E2 H C9J8Q9_HUMAN_00031;C9JZY6_HUMAN_00064;C9JZG9_HUMAN_00080 1679 DRKKFCKNAEEFT wildtype peptide Ubiquitin-conjugating enzyme E2 L3 B4DDG1_HUMAN_00106;E7EWS7_HUMAN_00196 1680 ICLDILKDKWSPA wildtype peptide Ubiquitin-conjugating enzyme E2 N 1681 FSEFYSKKNTIMF wildtype peptide Ubiquitin-like domain-containing CTD phosphatase 1 1682 QFLDYFKTEHKLE wildtype peptide Ubiquitin-like modifier-activating enzyme 1 B4DDE4_HUMAN_00492;Q5JRR6_HUMAN_00428;E7ERL1_HUMAN_00525 1683 KALADGKRLSDYS wildtype peptide Ubiquitin-like protein 4A 1684 LPACLNKEESKTC wildtype peptide Mini-chromosome maintenance complex-binding protein 1685 WPKFFEKYLRDVN wildtype peptide UPF0568 protein C14orf166 1686 LVVPVDKNDVGYR wildtype peptide UPF0609 protein C4orf27 1687 GCRHFSKTNELLQ wildtype peptide Uracil-DNA glycosylase B4DRT6_HUMAN_00252;UNG_HUMAN_00286 Q8NDD7_HUMAN_00538;Q96NH6_HUMAN_00549;F5H2B9_HUMAN_00453;G3XAG2_HUMAN_00 1688 ASAEVGKLRNQIK wildtype peptide Uveal autoantigen with coiled-coil domains and ankyrin repeats 549;H0YN48_HUMAN_00538;H0YNH8_HUMAN_00547 1689 RDHFLEKFGPLKH wildtype peptide Vacuolar protein sorting-associated protein 18 homolog 1690 DLRSFDKGPFATF wildtype peptide WD repeat-containing protein 82 1691 FSELKMKRLRKKF wildtype peptide Similar to 60S ribosomal protein L7; similar to P18124 Q5T6H2_HUMAN_00130;Q5T6H3_HUMAN_00130;Q5T6H7_HUMAN_00059;G5E9Y2_HUMAN_001 1692 IPTDYWKKMAKVL wildtype peptide Xaa-Pro aminopeptidase 1 73;G8JLB2_HUMAN_00173;XPP1_HUMAN_00130 1693 SSASTGKPPLSVE wildtype peptide Zinc finger CCCH domain-containing protein 11A E7EUW9_HUMAN_00372;E7ESP8_HUMAN_00372;F5H601_HUMAN_00367;F5H814_HUMAN_003 1694 ITQLRNKLENGKP wildtype peptide Zinc finger E-box-binding homeobox 2 48 1695 SSQSIGKHMKTAH wildtype peptide Zinc finger protein 292 1696 NRKMSSKSKKCKK wildtype peptide Trans-acting T-cell-specific transcription factor GATA-3 1697 DYGNKYKRRVPRV wildtype peptide Ski oncogene 1698 WGKIVAKNNKNMA wildtype peptide GTP-binding protein GEM 1699 PAPKAQKGQKAPA wildtype peptide 60S ribosomal protein L14 1700 WYVPDKKKAPSSP wildtype peptide Protein Shroom2 1701 MELIIGKKFKLPV wildtype peptide AH receptor-interacting protein E9PMH2_HUMAN_00066;E9PPD7_HUMAN_00066 1702 PDKKLSKNEILRL wildtype peptide T-cell acute lymphocytic leukemia protein 1 E7EVM2_HUMAN_00227;TAL1_HUMAN_00200;TAL1_HUMAN_00050 1703 LREFQGKLLRDLE wildtype peptide Tripartite motif-containing protein 26 1704 TLKHLDKAYEVED wildtype peptide Adenylate cyclase type 7 F5H4D1_HUMAN_00426;H3BQ93_HUMAN_00426 Acetylome - Acetyltransferase Microarray page 48 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1705 TIDNMGKEIPTDA wildtype peptide Amine oxidase [flavin-containing] A 1706 HKGRFFKLWLYEG wildtype peptide Carnitine O-palmitoyltransferase 1, muscle isoform E9PCP2_HUMAN_00345;CPT1B_HUMAN_00345;CPT1B_HUMAN_00311 1707 KATDQEKSRKLHE wildtype peptide Kinesin-1 heavy chain 1708 DLKDKTKVLEWAR wildtype peptide Protein FAM118A 1709 NSQMCQKSLDVET wildtype peptide Multidrug resistance protein 3 A4D1D5_HUMAN_00679;MDR3_HUMAN_00679 1710 LKATSVKEDSVLN wildtype peptide Ankyrin repeat domain-containing protein 36B AN36B_HUMAN_00473;AN36B_HUMAN_00473 1711 GWVDVDKETLQHR wildtype peptide Sulfide:quinone oxidoreductase, mitochondrial 1712 ISWEDIKWLRRLT wildtype peptide Hydroxyacid oxidase 1 1713 EPRELAKRGVRIV wildtype peptide Protocadherin gamma-A11 PCDGB_HUMAN_00062;PCDGB_HUMAN_00062 Serine/threonine-protein phosphatase 2A 65 kDa regulatory B4DDF7_HUMAN_00551;B4E1Q0_HUMAN_00128;E9PH38_HUMAN_00481;F5H3X9_HUMAN_005 1714 TLQSEVKPILEKL wildtype peptide subunit A alpha isoform 06 1715 TAPRQYKNQKESE wildtype peptide G patch domain-containing protein 1 1716 TRAKKRKPNFCPQ wildtype peptide TSNARE1 protein TSNA1_HUMAN_00125;E5RG83_HUMAN_00125;E5RHW3_HUMAN_00125 STA5B_HUMAN_00084;Q1KLZ6_HUMAN_00084;Q59GY7_HUMAN_00086;C9J4I3_HUMAN_00084 1717 EDGFLLKIKLGHY wildtype peptide Signal transducer and activator of transcription 5A ;C9JVV6_HUMAN_00084 1718 LVRAAQKAAFGKA wildtype peptide Talin-2 1719 KYNLYGKDIKERA wildtype peptide Glutathione S-transferase A1 GSTA3_HUMAN_00084;Q5JW84_HUMAN_00034;Q5JW85_HUMAN_00034 1720 DKDFLDKYSLKPN wildtype peptide Adenosine kinase ADK_HUMAN_00030;ADK_HUMAN_00047 B7Z4B6_HUMAN_00279;MERL_HUMAN_00120;MERL_HUMAN_00279;MERL_HUMAN_00279;ME 1721 IKPLDKKIDVFKF wildtype peptide Merlin RL_HUMAN_00196;MERL_HUMAN_00238;MERL_HUMAN_00237;MERL_HUMAN_00279 1722 FQEDVEKVKSSGD wildtype peptide Probable E3 ubiquitin-protein ligase HECTD2 Q5VZ98_HUMAN_00141;E7ERR3_HUMAN_00141 1723 SYSVKWKKSDVKF wildtype peptide Transmembrane 9 superfamily member 3 1724 QMDKETKENNLSE wildtype peptide Disks large-associated protein 4 F8WF49_HUMAN_00136;DLGP4_HUMAN_00827;DLGP4_HUMAN_00291 1725 NIHCLTKAIIQVS wildtype peptide Nck-associated protein 1-like B1ALG1_HUMAN_00202;B1ALF6_HUMAN_00244;B1ALG2_HUMAN_00220;B1ALG5_HUMAN_000 1726 DKGKGKKRPNRGK wildtype peptide Probable global transcription activator SNF2L2 85;F6XG14_HUMAN_00242;SMCA2_HUMAN_01538 1727 DRLQELKQRTKEI wildtype peptide Syntaxin-19 1728 KDNQQKKIQKVEK wildtype peptide Leucine-rich repeat and IQ domain-containing protein 1 C9JI57_HUMAN_00557;LRIQ1_HUMAN_00557 1729 KEKNLLKYIQFKT wildtype peptide Dimethylaniline monooxygenase [N-oxide-forming] 3 1730 MGLNLRKDQKKTK wildtype peptide Rab11 family-interacting protein 1 1731 CREEHKKKNPKVP wildtype peptide Putative high mobility group protein B3-like protein 1732 STGIKKKSNKKTN wildtype peptide Shugoshin-like 2 Q5JTW6_HUMAN_00087;C9JPQ8_HUMAN_00553;H0YG57_HUMAN_00049;PCCA_HUMAN_0052 1733 SRMPVIKPDIANW wildtype peptide Propionyl-CoA carboxylase alpha chain, mitochondrial 7 1734 GKVYKKKITLVNT wildtype peptide Uncharacterized protein KIAA1751 1735 SKTRRDKEKQSCK wildtype peptide FYVE, RhoGEF and PH domain-containing protein 3 B4DXH4_HUMAN_00136;F8W7P2_HUMAN_00533;FGD3_HUMAN_00533 F8VTR6_HUMAN_00074;H0YD03_HUMAN_00099;H3BNG1_HUMAN_00008;RAB3I_HUMAN_0036 1736 QPIRFVKASAVEC wildtype peptide Rab-3A-interacting protein 7;RAB3I_HUMAN_00367;RAB3I_HUMAN_00383;RAB3I_HUMAN_00161

1737 IPEATEKYLGGTD wildtype peptide Liver carboxylesterase 1 B7Z795_HUMAN_00267;E9PAU8_HUMAN_00401;H3BSU0_HUMAN_00039;EST1_HUMAN_00403 1738 KKQIEQKFAQIDE wildtype peptide Inner centromere protein 1739 KAEKDSKAEQAKV wildtype peptide Charged multivesicular body protein 1a F8VUA2_HUMAN_00027;F8VVT7_HUMAN_00027 1740 PPKPLKKLRFDIE wildtype peptide Retinoblastoma-associated protein C9JGV8_HUMAN_00211;F5H0W8_HUMAN_00211;BDP1_HUMAN_00211;BDP1_HUMAN_00211;B 1741 QEKKTEKPSTPVQ wildtype peptide Transcription factor TFIIIB component B homolog DP1_HUMAN_00211;BDP1_HUMAN_00191;BDP1_HUMAN_00211 1742 SDESAAKKPKWDD wildtype peptide Pumilio domain-containing protein KIAA0020 1743 LRGQYIKAVKKIK wildtype peptide Centrosomal protein of 152 kDa E7ER66_HUMAN_01272;CE152_HUMAN_01179;CE152_HUMAN_01272 B7ZM78_HUMAN_01219;D6W5D1_HUMAN_01165;H0Y470_HUMAN_00265;H0Y7U8_HUMAN_00 201;H7C2C6_HUMAN_00395;GRDN_HUMAN_01220;GRDN_HUMAN_01219;GRDN_HUMAN_0121 1744 DLEKMLKVEQEKM wildtype peptide Girdin 9 Acetylome - Acetyltransferase Microarray page 49 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1745 NIQFRRKTTVKTL wildtype peptide Anaphase-promoting complex subunit 10 D6R9Q5_HUMAN_00071;D6RA92_HUMAN_00071;D6RD74_HUMAN_00071 1746 IALPATKLVKLKD wildtype peptide Disintegrin and metalloproteinase domain-containing protein 28 E5RGY1_HUMAN_00190;ADA28_HUMAN_00190 D6RGW0_HUMAN_00138;ERAP2_HUMAN_00138;ERAP2_HUMAN_00138;ERAP2_HUMAN_0013 1747 KPGKELKVLSYPA wildtype peptide Endoplasmic reticulum aminopeptidase 2 8 1748 ESDTNKKLKQTSR wildtype peptide UPF0614 protein C14orf102 1749 SLEDRDKPYVCDI wildtype peptide Zinc finger protein neuro-d4 (Fragment) E9PDV3_HUMAN_00194;DPF1_HUMAN_00220;DPF1_HUMAN_00138 Q59EM5_HUMAN_00232;G5E980_HUMAN_00216;ARRB2_HUMAN_00216;ARRB2_HUMAN_0023 1750 STKTVKKIKVSVR wildtype peptide Beta-arrestin-2 1 A6NJK7_HUMAN_00128;F5GWN9_HUMAN_00128;F5H101_HUMAN_00128;F5H540_HUMAN_001 28;F5H692_HUMAN_00060;F5H797_HUMAN_00060;F5H8B8_HUMAN_00128;F8WE42_HUMAN_0 1751 GVDFHMKAVPGTE wildtype peptide Nucleolar protein 8 0128;NOL8_HUMAN_00060;NOL8_HUMAN_00128 ZN642_HUMAN_00440;ZN879_HUMAN_00289;ZN643_HUMAN_00448;D3DPV3_HUMAN_00448;E 1752 TGERPYKCKECGK wildtype peptide Zinc finger protein 192 7EN37_HUMAN_00379;ZN643_HUMAN_00346 1753 DADDNVKIICPGD wildtype peptide RABL2A protein 1754 ILSTYRKRTPVME wildtype peptide Lysyl oxidase homolog 2 1755 TSGSQKKSQDKGP wildtype peptide Multidrug resistance-associated protein 5 Q86UX3_HUMAN_00806;E9PBW0_HUMAN_00742 1756 SRSTCLKTNDEDK wildtype peptide N-acetyltransferase ESCO2 E5RFE4_HUMAN_00111;E5RFP7_HUMAN_00111;E5RIE3_HUMAN_00111 1757 EEDEGRKDSDTES wildtype peptide Zinc finger protein 330 1758 TIYKRQKSELSDG wildtype peptide Tripartite motif-containing protein 54 1759 QGIEMEKVMQELG wildtype peptide Uncharacterized protein C12orf4 1760 LNKICYKSGVPLI wildtype peptide Protein patched homolog 2 2ABB_HUMAN_00094;2ABD_HUMAN_00104;E5RIY1_HUMAN_00098;G3V149_HUMAN_00083;2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory BA_HUMAN_00108;2ABB_HUMAN_00097;2ABB_HUMAN_00100;2ABB_HUMAN_00152;2ABB_HU 1761 IEEKINKIRWLPQ wildtype peptide subunit B alpha isoform MAN_00160 1762 SAELDKKANLLKC wildtype peptide Polyhomeotic-like protein 1 1763 WGPGAAKSGVGTA wildtype peptide Transferrin receptor protein 1 F5H6B1_HUMAN_00136;G3V0E5_HUMAN_00337 1764 KRKELEKNMVEDS wildtype peptide Structural maintenance of chromosomes protein 2 F5GZR0_HUMAN_00336;SMC2_HUMAN_00336

1765 VKGTLGKASKQAG wildtype peptide A disintegrin and metalloproteinase with thrombospondin motifs 14 ATS14_HUMAN_00655;ATS14_HUMAN_00658;ATS14_HUMAN_00725 1766 PRKDLVKGKQIAA wildtype peptide E3 ubiquitin-protein ligase RNF213 RN213_HUMAN_00573;RN213_HUMAN_00524 B3KUP2_HUMAN_00021;B7Z6U1_HUMAN_00098;C9JGV6_HUMAN_00061;C9JJ34_HUMAN_001 1767 TPMMELKPNAGSD wildtype peptide Ran-specific GTPase-activating protein 11;C9JXG8_HUMAN_00061;H7C137_HUMAN_00038 Q5VYG5_HUMAN_00807;F5H7D1_HUMAN_00807;F8W9E6_HUMAN_01144;F8WAD9_HUMAN_0 1768 LSKEDLKKLHDFE wildtype peptide Transient receptor potential cation channel subfamily M member 6 1144;TRPM6_HUMAN_01139;TRPM6_HUMAN_01139;TRPM6_HUMAN_01144 D3YHP0_HUMAN_00099;B7WPI3_HUMAN_00099;CXAR_HUMAN_00099;CXAR_HUMAN_00099; 1769 FTSNDLKSGDASI wildtype peptide Coxsackievirus and adenovirus receptor CXAR_HUMAN_00099 1770 LEKDPEKRLGFRD wildtype peptide Rhodopsin kinase D6RDU5_HUMAN_00344;D6RER5_HUMAN_00352;D6RGI3_HUMAN_00352;H0Y961_HUMAN_000 1771 VMRVKEKEAELKE wildtype peptide Septin-11 81;SEP11_HUMAN_00362 B4DSF6_HUMAN_00007;C9JAV5_HUMAN_00007;F8WAV4_HUMAN_00007;CA2D3_HUMAN_000 1772 MEEMFHKKSEAVR wildtype peptide Voltage-dependent calcium channel subunit alpha-2/delta-3 07;CA2D3_HUMAN_00007 1773 PPICFVKPTSSMT wildtype peptide Tumor susceptibility gene 101 protein 1774 DFQYESKVFYLKM wildtype peptide 14-3-3 protein eta 1775 LAGNQDKRKEVLK wildtype peptide Alpha-2-macroglobulin 1776 MPSDLAKKKAAKK wildtype peptide ATP-binding cassette sub-family F member 2 C9JZV3_HUMAN_00007;C9JHK9_HUMAN_00007 1777 RFVRRKKKAAAAA wildtype peptide Activator of basal transcription 1 F5H2A9_HUMAN_00505;G3V1M7_HUMAN_00528;F5GYP4_HUMAN_00183;ACADV_HUMAN_004 1778 GCMDKGKELSGLG wildtype peptide Very long-chain specific acyl-CoA dehydrogenase, mitochondrial 60 1779 DEIMWFKKLHLVN wildtype peptide Peroxisomal acyl-coenzyme A oxidase 1 1780 IGPAIRKQQVGIP wildtype peptide Protein boule-like F2Z2G3_HUMAN_00111;BOLL_HUMAN_00117;BOLL_HUMAN_00123;BOLL_HUMAN_00117 Acetylome - Acetyltransferase Microarray page 50 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B0S7P1_HUMAN_00031;B0V072_HUMAN_00031;B0V073_HUMAN_00031;E9PIQ3_HUMAN_0003 1;E9PKQ9_HUMAN_00031;H0Y5T9_HUMAN_00037;H0Y602_HUMAN_00037;H0Y6K2_HUMAN_00 1781 EAAAPGKRIRKPS wildtype peptide Bromodomain-containing protein 2 037;H0Y799_HUMAN_00033;H0Y801_HUMAN_00033;BRD2_HUMAN_00031 1782 PGGAGGKGMRIVD wildtype peptide BUD13 homolog 1783 QVKSKAKKTVDKH wildtype peptide CCAAT/enhancer-binding protein beta 1784 RRKRMEKMAEQQA wildtype peptide Uncharacterized protein C1orf114 Q96HY3_HUMAN_00040;E7EMB3_HUMAN_00123;E7ETZ0_HUMAN_00077;G3V226_HUMAN_000 1785 LTMMARKMKDTDS wildtype peptide Calmodulin 40;G3V361_HUMAN_00040;H0Y7A7_HUMAN_00114 1786 LRVGIPKETPALT wildtype peptide 3-ketoacyl-CoA thiolase, mitochondrial 1787 QTKGYNKVSPFFV wildtype peptide 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondria C9J2G3_HUMAN_00174;C9JQQ2_HUMAN_00174;OXSM_HUMAN_00174 1788 LWLTKTKLIEGLP wildtype peptide 39S ribosomal protein L37, mitochondrial 1789 FQHSKYKVDFIEE wildtype peptide 39S ribosomal protein L39, mitochondrial C9JG87_HUMAN_00226;RM39_HUMAN_00236 1790 LRDIARKHGCAFL wildtype peptide 4-aminobutyrate aminotransferase, mitochondrial H3BNQ7_HUMAN_00318;H3BRN4_HUMAN_00333 1791 LGFKTPKEAIEGT wildtype peptide 40S ribosomal protein S11 B7Z712_HUMAN_00125;C9JL25_HUMAN_00167;E7ESH4_HUMAN_00125;E7EXB4_HUMAN_0012 1792 LARSIAKEGFEKI wildtype peptide 60 kDa heat shock protein, mitochondrial 5 1793 IANAHRKPLVIIA wildtype peptide 60 kDa heat shock protein, mitochondrial 1794 IGIEIIKRTLKIP wildtype peptide 60 kDa heat shock protein, mitochondrial 1795 VLLSEKKISSIQS wildtype peptide 60 kDa heat shock protein, mitochondrial 1796 EIPKEEKDPGMGA wildtype peptide 60 kDa heat shock protein, mitochondrial 1797 NSSPSAKDIKKIL wildtype peptide 60S acidic ribosomal protein P2 E7EW01_HUMAN_00046;E9PKU4_HUMAN_00046;E9PKZ0_HUMAN_00046;G3V1A1_HUMAN_00 1798 YIKGIVKDIIHDP wildtype peptide 60S ribosomal protein L8 046 1799 GFGNGMKQMRRTW wildtype peptide A-kinase anchor protein 8-like 1800 EAMSKLKPYFLTD wildtype peptide Acetyl-CoA acetyltransferase, cytosolic 1801 LTDVYNKIHMGSC wildtype peptide Acetyl-CoA acetyltransferase, mitochondrial 1802 AASMVLKDVGLKK wildtype peptide Acetyl-CoA acetyltransferase, mitochondrial Q6ZV30_HUMAN_00313;F5H6F4_HUMAN_00275;F8W7Y1_HUMAN_00396;ACS2L_HUMAN_0039 1803 AVRLLLKYGDAWV wildtype peptide Acetyl-coenzyme A synthetase 2-like, mitochondrial 6 C9JZR4_HUMAN_00156;E9PB03_HUMAN_00184;F5GYF6_HUMAN_00155;H0Y6A0_HUMAN_000 1804 KKGLGAKKGSLGA wildtype peptide ADP-ribosylation factor GTPase-activating protein 3 75 1805 LKHANAKPFEVPF wildtype peptide ADP-sugar pyrophosphatase 1806 VAAAISKTAVAPI wildtype peptide ADP/ATP translocase 2 1807 CLVKIYKSDGIKG wildtype peptide ADP/ATP translocase 2 1808 AFKDKYKQIFLGG wildtype peptide ADP/ATP translocase 2 1809 FRDEGGKAFFKGA wildtype peptide ADP/ATP translocase 3 1810 EVWTWGKGKEGQL wildtype peptide Alsin 1811 AYVHEFKFRSILA wildtype peptide Aminopeptidase B A6NKB8_HUMAN_00407;C9JMZ3_HUMAN_00315;H7C2T3_HUMAN_00154 1812 TICSLEKKSLLRD wildtype peptide Anaphase-promoting complex subunit 7 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat 1813 VNAKDSKWLTPLH wildtype peptide subunit A ANR28_HUMAN_00106;ANR28_HUMAN_00103 1814 SKHDMNKVLDLEL wildtype peptide Annexin A1 1815 DVAALHKAIMVKG wildtype peptide Annexin A1 Q5T3N0_HUMAN_00053;Q5T3N1_HUMAN_00064 1816 AFTMVCKDADEAK wildtype peptide Aspartate aminotransferase, mitochondrial 1817 FSIYMTKDGRISV wildtype peptide Aspartate aminotransferase, mitochondrial 1818 PSREPGKFYSLPQ wildtype peptide Aspartate--tRNA ligase, mitochondrial

1819 PDGPPEKRITATM wildtype peptide AT-rich interactive domain-containing protein 1A Q96SM7_HUMAN_00233;H0Y488_HUMAN_00802;ARI1A_HUMAN_01688;ARI1A_HUMAN_01522 Acetylome - Acetyltransferase Microarray page 51 of 167

Sequence PEP_FLAG Protein name Uniprot IDs A8K1R6_HUMAN_00348;Q63ZY4_HUMAN_00348;H3BSK9_HUMAN_00288;H3BUF6_HUMAN_003 48;ATX2L_HUMAN_00348;ATX2L_HUMAN_00348;ATX2L_HUMAN_00348;ATX2L_HUMAN_00348; 1820 LASREGKYIPLPQ wildtype peptide Ataxin-2-like protein ATX2L_HUMAN_00348 1821 KMKNYNKPWEPKW wildtype peptide ATP synthase protein 8 1822 KMKKEGKLIMGIG wildtype peptide ATP-citrate synthase B4E3P0_HUMAN_00697;E7ENH9_HUMAN_01022;ACLY_HUMAN_00958 ATP-dependent Clp protease ATP-binding subunit clpX-like, 1823 SRRKNEKYLGFGT wildtype peptide mitochondrial B1AHC8_HUMAN_00420;B1AHC7_HUMAN_00461;B1AHC9_HUMAN_00411;F5H1I8_HUMAN_003 1824 TPEQVGKMKAIVE wildtype peptide X-ray repair cross-complementing protein 6 28 1825 IRIAAYKSILQER wildtype peptide X-ray repair cross-complementing protein 5 1826 IIIHSLKKCDISL wildtype peptide X-ray repair cross-complementing protein 5 1827 IYVTPEKIAKSKM wildtype peptide ATP-dependent DNA helicase Q1 F8WA66_HUMAN_00193;F8WD97_HUMAN_00193 1828 NPEVGLKPVWYSP wildtype peptide Bifunctional glutamate/proline--tRNA ligase E7EMN0_HUMAN_00566;F5H7I7_HUMAN_00549 1829 CGKNPAKYYTLFG wildtype peptide Bifunctional glutamate/proline--tRNA ligase E9PBU3_HUMAN_00355;F5GWY2_HUMAN_00297;H7C084_HUMAN_00050;H7C1S2_HUMAN_00 1830 ALTILSKKKNGNY wildtype peptide Bifunctional purine biosynthesis protein PURH 025 1831 RHAYVHKPYLYSK wildtype peptide Biorientation of chromosomes in cell division protein 1-like 1832 INRPFLKPSYAFS wildtype peptide Bloom syndrome protein F5H7R6_HUMAN_01041;H0YNU5_HUMAN_01280 1833 QLEMTQKPHKKPG wildtype peptide Branched-chain-amino-acid aminotransferase, mitochondrial 1834 SNLDLRKELSEPS wildtype peptide Carbamoyl-phosphate synthase [ammonia], mitochondrial H0YGP4_HUMAN_00849;CPSM_HUMAN_00390 1835 HRNSWAKAYNTLI wildtype peptide Carnitine O-acetyltransferase C9JBD1_HUMAN_00261;CACP_HUMAN_00240;CACP_HUMAN_00261 1836 YHGQLTKEAAMGQ wildtype peptide Carnitine O-palmitoyltransferase 2, mitochondrial 1837 GGTNIIKLIDTVK wildtype peptide Casein kinase II subunit alpha H3BNI9_HUMAN_00097;H3BSA1_HUMAN_00026 1838 AQIFIQKKAVKNF wildtype peptide Catalase CTNA2_HUMAN_00841;CTNA2_HUMAN_00796;CTNA2_HUMAN_00473;CTNA2_HUMAN_00875; 1839 SYVASTKYQKVYG wildtype peptide Catenin alpha-2 CTNA2_HUMAN_00520 1840 ZMSVFGKLFGAGG wildtype peptide Charged multivesicular body protein 4b 1841 KFSAYIKNSNPAL wildtype peptide Chloride intracellular channel protein 1 1842 SHIQSDKEIDAFV wildtype peptide Choline dehydrogenase, mitochondrial

1843 RYLTNQKNSNSKN wildtype peptide Chromatin modification-related protein MEAF6 B1AK63_HUMAN_00047;B1AK64_HUMAN_00069;EAF6_HUMAN_00069;EAF6_HUMAN_00069 1844 RRVVNGKVEYFLK wildtype peptide Chromobox protein homolog 3 B8ZZ43_HUMAN_00044;C9JMM0_HUMAN_00044 CHD4_HUMAN_00884;CHD5_HUMAN_00858;B1AK51_HUMAN_00374;E9PG89_HUMAN_00953;F 2Z2R5_HUMAN_00858;F5GWX5_HUMAN_00877;F5GXP9_HUMAN_00266;F5GZM9_HUMAN_003 74;F5H2G1_HUMAN_00858;F5H2K7_HUMAN_00266;CHD3_HUMAN_00894;CHD4_HUMAN_0088 1845 LKNNQSKFFRVLN wildtype peptide Chromodomain-helicase-DNA-binding protein 3 4 1846 EIARFFKLHERKC wildtype peptide Coronin-1C A7MAP0_HUMAN_00343;B4E3S0_HUMAN_00232;H0YHL7_HUMAN_00028 1847 PDPGESKGEPRSE wildtype peptide CREB-binding protein 1848 AKKKNNKKTNKNK wildtype peptide CREB-binding protein 1849 TKSHAHKMVKWGL wildtype peptide CREB-binding protein Q4LE28_HUMAN_01771;E9PEX7_HUMAN_00276 1850 DVKNWIKYARFEE wildtype peptide Crooked neck-like protein 1 Q5JY65_HUMAN_00369;CRNL1_HUMAN_00220;CRNL1_HUMAN_00369 CELF1_HUMAN_00436;B4DIB6_HUMAN_00353;Q5VZZ6_HUMAN_00448;E9PC62_HUMAN_00471 ;F8W940_HUMAN_00435;G5EA30_HUMAN_00464;H0YFD9_HUMAN_00264;CELF2_HUMAN_004 40;CELF2_HUMAN_00471;CELF2_HUMAN_00459;CELF2_HUMAN_00438;CELF1_HUMAN_00432 1851 AKVFIDKQTNLSK wildtype peptide CUGBP Elav-like family member 2 ;CELF1_HUMAN_00433;CELF1_HUMAN_00462 1852 QATTENKELKTVT wildtype peptide Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial H0Y477_HUMAN_00091;H0YKC5_HUMAN_00156;H0YKI0_HUMAN_00179;H0YMM5_HUMAN_000 94;H0YMP1_HUMAN_00048;H0YNJ9_HUMAN_00091;H0YNW5_HUMAN_00094;DUT_HUMAN_00 1853 RSGLAAKHFIDVG wildtype peptide Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial 091 1854 RIFYDMKVRKCST wildtype peptide Destrin Acetylome - Acetyltransferase Microarray page 52 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1855 ELAEFEKLSDQVK wildtype peptide Diamine acetyltransferase 2 B4DHG0_HUMAN_00028;B4DT69_HUMAN_00127;F5H4I0_HUMAN_00077;E9PEX6_HUMAN_001 1856 DKMMEQKSTAVKA wildtype peptide Dihydrolipoyl dehydrogenase, mitochondrial 04 B4DHG0_HUMAN_00311;B4DT69_HUMAN_00362;F5H4I0_HUMAN_00360;E9PEX6_HUMAN_003 1857 KSEEQLKEEGIEY wildtype peptide Dihydrolipoyl dehydrogenase, mitochondrial 87 1858 FGKEFDKHFGKGG wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_03641;PRKDC_HUMAN_03642 1859 AKAMRLKISKRRV wildtype peptide DNA-directed RNA polymerase I subunit RPA49 E7EX70_HUMAN_00308;RPA49_HUMAN_00378 1860 KRELYDKGGEQAI wildtype peptide DnaJ homolog subfamily A member 1 1861 NPEAADKFKEINN wildtype peptide DnaJ homolog subfamily C member 5 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 1862 NVESYTKLGNPTR wildtype peptide subunit 1 B7Z4L4_HUMAN_00015;F5H6I5_HUMAN_00161 1863 KRSLLAKDLTKTC wildtype peptide Down syndrome critical region protein 3 A8MTY9_HUMAN_00083;E7EWN9_HUMAN_00089 1864 LLDAYLKTRTFLV wildtype peptide Elongation factor 1-gamma B4DTG2_HUMAN_00197;B4DUP0_HUMAN_00027;E7EMT2_HUMAN_00027 1865 FDPANGKFSKSAT wildtype peptide Elongation factor 2 B4DMC6_HUMAN_00272;F5GZG3_HUMAN_00272;F5H370_HUMAN_00272 1866 LDNFLDKLZZZZZ wildtype peptide Elongation factor 2 1867 AEGGGAKFKKYEE wildtype peptide Elongation factor Tu, mitochondrial 1868 DTQVHGKKLFLRF wildtype peptide Endonuclease 8-like 2 E7EU31_HUMAN_00050;E9PPN4_HUMAN_00050;NEIL2_HUMAN_00050 1869 AKLEALKDLASLS wildtype peptide Engulfment and cell motility protein 1 B4DJV6_HUMAN_00009;C9IZR8_HUMAN_00105;C9JIW2_HUMAN_00105

1870 TAHSLFKRYRHEF wildtype peptide Exportin-2 B4DM67_HUMAN_00059;F8W904_HUMAN_00158;XPO2_HUMAN_00158;XPO2_HUMAN_00158 1871 FKILLEKLMLAQD wildtype peptide Exportin-T 1872 GFPTWLKLDKKVS wildtype peptide Ezrin 1873 KVRIAAKFITHAP wildtype peptide F-actin-capping protein subunit alpha-1 B4DG50_HUMAN_00097;A8MW68_HUMAN_00097;C9JUG7_HUMAN_00097;F8W9N7_HUMAN_0 1874 KNRICFKFDHLRK wildtype peptide F-actin-capping protein subunit alpha-2 0097 1875 FARIWTKDGNLAS wildtype peptide F-box-like/WD repeat-containing protein TBL1XR1 1876 MMENGIKPVYVFD wildtype peptide Flap endonuclease 1 1877 GAAGKFKRGKZZZ wildtype peptide Flap endonuclease 1 E9PGQ4_HUMAN_00110;F2Z2U3_HUMAN_00031;H0Y7W6_HUMAN_00072;H7BY87_HUMAN_00 1878 RYVQELKQERKSN wildtype peptide Formin-binding protein 1 110;FNBP1_HUMAN_00110;FNBP1_HUMAN_00110;FNBP1_HUMAN_00110 H3BNM5_HUMAN_00042;H3BPS8_HUMAN_00096;H3BQN4_HUMAN_00042;H3BUH7_HUMAN_0 1879 STGSIAKRLQSIG wildtype peptide Fructose-bisphosphate aldolase A 0042 ALDOC_HUMAN_00147;B7Z1N6_HUMAN_00108;A8MVZ9_HUMAN_00147;H3BPS8_HUMAN_002 1880 DGADFAKWRCVLK wildtype peptide Fructose-bisphosphate aldolase A 01;H3BQN4_HUMAN_00147;H3BR04_HUMAN_00136;H3BUH7_HUMAN_00147 1881 DYGLDPKIANAIM wildtype peptide Fumarate hydratase, mitochondrial 1882 KFHGTVKAENGKL wildtype peptide Glyceraldehyde-3-phosphate dehydrogenase E7EU54_HUMAN_00061;E7EUT4_HUMAN_00019 1883 AAKAVGKVIPELN wildtype peptide Glyceraldehyde-3-phosphate dehydrogenase E7EPW1_HUMAN_00045;E7EUT4_HUMAN_00177;E7EUT5_HUMAN_00144 1884 LEKSLRKSLPASL wildtype peptide Glycine N-acyltransferase 1885 VQFEPSKGAIGKA wildtype peptide Glycine--tRNA ligase Q86T14_HUMAN_00263;H0YLV5_HUMAN_00276;H0YMB3_HUMAN_00258;H0YK13_HUMAN_000 1886 YRASEGKTVEVPF wildtype peptide GMP reductase 2 31;H0YK71_HUMAN_00059;GMPR2_HUMAN_00309 1887 YTHEFHKTKANFM wildtype peptide Golgi SNAP receptor complex member 1 B4DQA8_HUMAN_00122;E9PCW1_HUMAN_00122;G5E9T8_HUMAN_00059 1888 KKKIKEKYIDQEE wildtype peptide Heat shock protein HSP 90-alpha Q86U12_HUMAN_00104;HS90A_HUMAN_00405 E9PHH7_HUMAN_00073;E9PHI1_HUMAN_00073;E9PHI2_HUMAN_00073;H0Y598_HUMAN_0006 1889 FYEAFSKNLKLGI wildtype peptide Heat shock protein HSP 90-beta 1;H0Y5S7_HUMAN_00061;H0Y6E4_HUMAN_00061 1890 MKEILDKKVEKVT wildtype peptide Heat shock protein HSP 90-beta 1891 AKGFGGKYGVERD wildtype peptide Hematopoietic lineage cell-specific protein B4DQ69_HUMAN_00123;E7EVW7_HUMAN_00123 1892 VKAAWGKVGAHAG wildtype peptide Hemoglobin subunit alpha 1893 VKSTANKYQVFFF wildtype peptide Hepatoma-derived growth factor A8K8G0_HUMAN_00012;Q5SZ07_HUMAN_00060;Q5SZ08_HUMAN_00037 Acetylome - Acetyltransferase Microarray page 53 of 167

Sequence PEP_FLAG Protein name Uniprot IDs HMGB2_HUMAN_00043;D6R9A6_HUMAN_00043;E7EQU1_HUMAN_00043;E7ES08_HUMAN_000 1894 NFAEFSKKCSERW wildtype peptide High mobility group protein B3 43;E9PES6_HUMAN_00043;HMG3M_HUMAN_00043 1895 KQPYITKAAKLKE wildtype peptide High mobility group protein B3 E7EQU1_HUMAN_00145;E7ES08_HUMAN_00145;E9PES6_HUMAN_00145 D6RC06_HUMAN_00021;D6RD60_HUMAN_00021;D6RE99_HUMAN_00021;D6REP8_HUMAN_00 1896 GDTIFGKIIRKEI wildtype peptide Histidine triad nucleotide-binding protein 1 021 1897 QLYSTLKSILQQV wildtype peptide Histone acetyltransferase KAT2B

KAT6B_HUMAN_00815;KAT6A_HUMAN_00604;A5PLL3_HUMAN_00604;C9K0F9_HUMAN_00184; E7ER15_HUMAN_00293;E7EUP3_HUMAN_00246;G3V125_HUMAN_00276;G5E9K7_HUMAN_004 1898 KLFLDHKTLYYDV wildtype peptide Histone acetyltransferase KAT7 02;KAT7_HUMAN_00322;KAT7_HUMAN_00263;KAT6B_HUMAN_00632;KAT6B_HUMAN_00523 1899 LIDGLTKFFTPSP wildtype peptide Histone acetyltransferase KAT6B KAT6A_HUMAN_00415;A5PLL3_HUMAN_00415;KAT6B_HUMAN_00440 1900 APKKGSKKAITKA wildtype peptide Histone H2B type 1-B H2B1J_HUMAN_00047;H2B1O_HUMAN_00047;H2B1B_HUMAN_00047;H2BFS_HUMAN_00047;H 2B1D_HUMAN_00047;H2B1C_HUMAN_00047;H2B2E_HUMAN_00047;H2B2F_HUMAN_00047;H2 B3B_HUMAN_00047;H2B1H_HUMAN_00047;H2B1N_HUMAN_00047;H2B1M_HUMAN_00047;H2B 1901 YVYKVLKQVHPDT wildtype peptide Histone H2B type 1-K 1L_HUMAN_00047;B4DR52_HUMAN_00047;H2B2F_HUMAN_00047 H2B1J_HUMAN_00013;H2B1O_HUMAN_00013;H2BFS_HUMAN_00013;H2B1D_HUMAN_00013;H 2B1C_HUMAN_00013;H2B2E_HUMAN_00013;H2B2F_HUMAN_00013;H2B3B_HUMAN_00013;H2 B1H_HUMAN_00013;H2B1N_HUMAN_00013;H2B1L_HUMAN_00013;B4DR52_HUMAN_00013;H2 1902 SAPAPKKGSKKAV wildtype peptide Histone H2B type 1-K B2F_HUMAN_00013 H2B1J_HUMAN_00024;H2B1O_HUMAN_00024;H2B1D_HUMAN_00024;H2B1C_HUMAN_00024;H 2B2E_HUMAN_00024;H2B3B_HUMAN_00024;H2B1H_HUMAN_00024;H2B1N_HUMAN_00024;H2 1903 AVTKAQKKDGKKR wildtype peptide Histone H2B type 1-K B1L_HUMAN_00024;H2B2C_HUMAN_00024;H2B2D_HUMAN_00024

H2B1J_HUMAN_00109;H2B1O_HUMAN_00109;H2B1B_HUMAN_00109;H2BFS_HUMAN_00109;H 2B1D_HUMAN_00109;H2B1C_HUMAN_00109;H2B2E_HUMAN_00109;H2B2F_HUMAN_00109;H2 B3B_HUMAN_00109;H2B1H_HUMAN_00109;H2B1A_HUMAN_00110;H2B1N_HUMAN_00109;H2B 1904 LPGELAKHAVSEG wildtype peptide Histone H2B type 1-K 1M_HUMAN_00109;H2B1L_HUMAN_00109;B4DR52_HUMAN_00109;H2B2F_HUMAN_00109 1905 KSAPVPKKGSKKA wildtype peptide Histone H2B type 1-M 1906 PPEKPRKHDSGAA wildtype peptide Huntingtin-interacting protein K 1907 ERGDASKEDIDTA wildtype peptide Hydroxyacyl-coenzyme A dehydrogenase, mitochondria 1908 DHTEVLKGIQKFP wildtype peptide Hydroxymethylglutaryl-CoA lyase, mitochondria B1AK13_HUMAN_00068;B4DUP4_HUMAN_00093;F5GYT9_HUMAN_00068 1909 VEKAFMKASSELF wildtype peptide Hydroxymethylglutaryl-CoA synthase, cytoplasmic 1910 QERPPVKPFILTR wildtype peptide Immunoglobulin-binding protein 1 1911 ATKELRKLKNQAZ wildtype peptide Importin subunit beta-1 B7ZAV6_HUMAN_00726;F5H4R7_HUMAN_00655 1912 RKTIPIKYPLKEI wildtype peptide Isoleucine--tRNA ligase, cytoplasmic Q5TCC4_HUMAN_00076;F5H1M4_HUMAN_00354 1913 KITELYKQYDFGK wildtype peptide Isoleucine--tRNA ligase, mitochondrial 1914 SYCYVSKEELKEL wildtype peptide Isopentenyl-diphosphate Delta-isomerase 1 1915 RTHLNDKYGYZZZ wildtype peptide Kanadaptin 1916 ADDFRVKYETELA wildtype peptide Keratin, type I cytoskeletal 18 K2C72_HUMAN_00234;K2C79_HUMAN_00253;K2C73_HUMAN_00241;B4DXK4_HUMAN_00046;E 7ES34_HUMAN_00175;F5GZD1_HUMAN_00199;F8VZY5_HUMAN_00199;H9KV51_HUMAN_0023 1917 EFVVLKKDVDAAY wildtype peptide Keratin, type II cytoskeletal 7 4;K2C72_HUMAN_00234;K2C73_HUMAN_00241 1918 RRYLWLKDCKINL wildtype peptide Lamina-associated polypeptide 2, isoform alpha A6NG23_HUMAN_00421;C9J1F6_HUMAN_01179;C9J6L0_HUMAN_01179;C9J8K3_HUMAN_0118 8;C9J9U2_HUMAN_01179;C9JAS0_HUMAN_01188;C9JB33_HUMAN_01179;C9JD87_HUMAN_01 190;C9JI26_HUMAN_01190;C9JI89_HUMAN_01188;C9JI93_HUMAN_01190;C9JM53_HUMAN_011 88;C9JTL3_HUMAN_01190;C9JTM3_HUMAN_01179;C9JXZ3_HUMAN_01190;F8VVM9_HUMAN_0 0421;F8VVQ5_HUMAN_00421;F8W1J3_HUMAN_00421;PRC2A_HUMAN_01183;PRC2A_HUMAN_ 1919 KSLAPKKPPTGPL wildtype peptide Protein PRRC2A 01195 1920 LSELEEKLKKCNM wildtype peptide Leucine carboxyl methyltransferase 1 A8MQ43_HUMAN_00185;LCMT1_HUMAN_00204 Acetylome - Acetyltransferase Microarray page 54 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1921 PTDFLAKMEEANI wildtype peptide Leucine-rich PPR motif-containing protein, mitochondrial B8ZZ38_HUMAN_00187;C9JCA9_HUMAN_00161;F5H4J6_HUMAN_00087 1922 AVLDTGKYVGLVR wildtype peptide Leucine-rich PPR motif-containing protein, mitochondrial 1923 WKDKFMKEATTNA wildtype peptide Leukocyte elastase inhibitor B4DNT0_HUMAN_00026;B4E3A8_HUMAN_00139 E9PGY5_HUMAN_01138;F8VU38_HUMAN_00968;F8VZP8_HUMAN_00968;F8W1C2_HUMAN_00 1924 KNRSSGKTPETLV wildtype peptide Mediator of DNA damage checkpoint protein 1 968;MDC1_HUMAN_01138 1925 KKSHSIKPESWSK wildtype peptide Mediator of RNA polymerase II transcription subunit 1 1926 QQTVSAKGPPEKR wildtype peptide Mediator of RNA polymerase II transcription subunit 6 B4DU17_HUMAN_00243;G3V4A5_HUMAN_00236 B4DJE7_HUMAN_00112;B7Z9I1_HUMAN_00265;Q5T4U5_HUMAN_00334;H0YDT5_HUMAN_0003 1927 ALDEATKYALERK wildtype peptide Medium-chain specific acyl-CoA dehydrogenase, mitochondrial 9;ACADM_HUMAN_00305 1928 QVNEPWKRIKGSE wildtype peptide Methionine--tRNA ligase, cytoplasmic 1929 RQLFWEKKLSGLN wildtype peptide Methyl-CpG-binding domain protein 3 1930 GHCEKIKKACGNF wildtype peptide Multifunctional protein ADE2 D6RF62_HUMAN_00193;E9PBS1_HUMAN_00285;PUR6_HUMAN_00292 1931 PKGSEMKYALKRL wildtype peptide Myb-binding protein 1A E7EN09_HUMAN_00071;MBB1A_HUMAN_00071 1932 EGPAPCKQMKLEA wildtype peptide MYC-induced nuclear antigen D6RCB6_HUMAN_00020;MINA_HUMAN_00020;MINA_HUMAN_00020 1933 GPGMPAKPLQHFS wildtype peptide Histone-lysine N-methyltransferase MLL2 F5H3W9_HUMAN_00685;F5H6E2_HUMAN_00680;F5H730_HUMAN_00669;MYO1C_HUMAN_006 1934 VRHLGYKPEEYKM wildtype peptide Unconventional myosin-Ic 69;MYO1C_HUMAN_00685 F8W966_HUMAN_00247;F6XG23_HUMAN_00179;MEF2A_HUMAN_00247;MEF2A_HUMAN_0024 9;MEF2A_HUMAN_00247;MEF2A_HUMAN_00249;MEF2A_HUMAN_00247;MEF2A_HUMAN_0017 1935 GANSLGKVMPTKS wildtype peptide Myocyte-specific enhancer factor 2A 9 Q5H9R2_HUMAN_00046;C9IZN5_HUMAN_00056;F8WAS3_HUMAN_00046;H7BYD0_HUMAN_00 1936 KNAAYRKYTEQIT wildtype peptide NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 042

1937 PDYRQWKIEGTPL wildtype peptide NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 E9PMX3_HUMAN_00097;E9PPR0_HUMAN_00065;E9PQP1_HUMAN_00092;G3V0I5_HUMAN_000 1938 KWSFMNKPSDGRP wildtype peptide NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial 97;NDUV1_HUMAN_00095

1939 CLVEIEKAPKVVA wildtype peptide NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial C9JPQ5_HUMAN_00084;NDUS1_HUMAN_00098;NDUS1_HUMAN_00027 B4DZ70_HUMAN_00009;B7Z6V0_HUMAN_00119;MAON_HUMAN_00119;Q6TCH8_HUMAN_0005 1940 LQDRNEKLFYRVL wildtype peptide NADP-dependent malic enzyme 7;Q8NAS5_HUMAN_00057;E9PMB9_HUMAN_00119;E9PNN2_HUMAN_00119 1941 RLIYSGKQMNDEK wildtype peptide NEDD8 1942 SRLHDSKGQTKLL wildtype peptide Nuclear receptor coactivator 2 1943 IAMKTEKEEMSFE wildtype peptide Nuclear receptor coactivator 2 NCOR2_HUMAN_00878;C9J0Q5_HUMAN_00860;C9J239_HUMAN_00861;C9J7T7_HUMAN_0043 1;C9JE98_HUMAN_00860;C9JFD3_HUMAN_00878;C9JJF6_HUMAN_00877;NCOR2_HUMAN_008 1944 EGPAKGKDAEAAE wildtype peptide Nuclear receptor corepressor 2 (Fragment) 78;NCOR2_HUMAN_00861;NCOR2_HUMAN_00861 C9J0Q5_HUMAN_01777;C9J239_HUMAN_01778;C9J7T7_HUMAN_01348;C9JE98_HUMAN_0177 7;C9JFD3_HUMAN_01787;C9JJF6_HUMAN_01786;H7C0P3_HUMAN_00022;H7C1J7_HUMAN_00 117;NCOR2_HUMAN_00085;NCOR2_HUMAN_01787;NCOR2_HUMAN_01778;NCOR2_HUMAN_0 1945 GPTHLTKPTTTSS wildtype peptide Nuclear receptor corepressor 2 1778 1946 NIVKFHKYWADIK wildtype peptide Nuclear receptor-binding protein C9JHZ6_HUMAN_00134;F8W6G1_HUMAN_00134 1947 LQENGQKDVGSYQ wildtype peptide Nuclear receptor-interacting protein 1 1948 TQSALPKIIKAGF wildtype peptide Obg-like ATPase 1 1949 HRAEISKIMRECQ wildtype peptide OCIA domain-containing protein 2 D6RD77_HUMAN_00041;OCAD2_HUMAN_00041 1950 LAEQYAKENGTKL wildtype peptide Ornithine carbamoyltransferase, mitochondrial 1951 WREQNEKYYLKSL wildtype peptide Paired amphipathic helix protein Sin3a 1952 FVEFAAKPPARKA wildtype peptide Paraspeckle component 1 F5H656_HUMAN_00146;PSPC1_HUMAN_00206 1953 EDEADPKRQKTEN wildtype peptide Parathymosin F8VVM2_HUMAN_00098;F8VWQ0_HUMAN_00098;F8VWR4_HUMAN_00099;F8VZL5_HUMAN_00 1954 MQVDPQKYKGIFN wildtype peptide Phosphate carrier protein, mitochondrial 099;MPCP_HUMAN_00098 Acetylome - Acetyltransferase Microarray page 55 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1955 IMHNYDKLKSRIS wildtype peptide Phosphatidylinositol 3-kinase regulatory subunit alpha E7EX19_HUMAN_00167;P85A_HUMAN_00260;P85A_HUMAN_00230;P85A_HUMAN_00530 1956 VENFIQKQEKRIF wildtype peptide Phosphatidylinositol transfer protein beta isoform B7Z7Q0_HUMAN_00217;C9JW90_HUMAN_00215;PIPNB_HUMAN_00215 1957 DKRYIIKTITSED wildtype peptide Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha B4DGX2_HUMAN_00086;Q5JUT3_HUMAN_00097;E9PCB2_HUMAN_00104 1958 LKDHWQKYGRNFF wildtype peptide Phosphoglucomutase-1 B4DPV0_HUMAN_00222;F5H857_HUMAN_00395;PGM1_HUMAN_00437 1959 NKLTLDKLDVKGK wildtype peptide Phosphoglycerate kinase 1 B4E1H9_HUMAN_00011;E7ERH5_HUMAN_00011 1960 PFPTHYKDLWDNK wildtype peptide Poly(ADP-ribose) glycohydrolase PARG_HUMAN_00421;PARG_HUMAN_00395 PUF60_HUMAN_00437;PUF60_HUMAN_00411;PUF60_HUMAN_00394;PUF60_HUMAN_00425;P 1961 RHMVMQKLLRKQE wildtype peptide Poly(U)-binding-splicing factor PUF60 UF60_HUMAN_00408 PABP5_HUMAN_00111;E5RGH3_HUMAN_00059;E5RH24_HUMAN_00104;E5RJB9_HUMAN_001 1962 VGNIFIKNLDKSI wildtype peptide Polyadenylate-binding protein 1 04;E7EQV3_HUMAN_00059;PABP1_HUMAN_00104 1963 GIQQLVKETGVTK wildtype peptide Polyribonucleotide nucleotidyltransferase 1, mitochondria F5GY90_HUMAN_00070;F5H0P4_HUMAN_00081;F5H345_HUMAN_00069;G3V1P4_HUMAN_000 1964 LEHALEKNEVDLV wildtype peptide Porphobilinogen deaminase 70;G5EA58_HUMAN_00087;HEM3_HUMAN_00070 1965 VIARLTKEVTAAR wildtype peptide Pre-mRNA-processing factor 19 F5GY56_HUMAN_00122;F5H2I0_HUMAN_00037 B4DDC6_HUMAN_00007;B4DHP2_HUMAN_00007;B4DP11_HUMAN_00007;B4DP21_HUMAN_00 1966 MQPASAKWYDRRD wildtype peptide Prostaglandin E synthase 3 007 1967 LVSKIAKYPHVED wildtype peptide Proteasome activator complex subunit 3 B3KQ25_HUMAN_00134;PSME3_HUMAN_00208 1968 EKLVLSKLYEEGS wildtype peptide Proteasome subunit alpha type-3 1969 IREEAEKYAKESL wildtype peptide Proteasome subunit alpha type-3 G3V4X5_HUMAN_00163;H0YJ03_HUMAN_00066;PSA3_HUMAN_00231 H0YKT8_HUMAN_00156;H0YL69_HUMAN_00180;H0YMA1_HUMAN_00180;H0YMI6_HUMAN_001 54;H0YMZ1_HUMAN_00180;H0YKS0_HUMAN_00092;H0YN18_HUMAN_00149;PSA4_HUMAN_00 1970 MLKQDYKEGEMTL wildtype peptide Proteasome subunit alpha type-4 109 1971 NPEEIEKYVAEIE wildtype peptide Proteasome subunit alpha type-7 E9PBC8_HUMAN_00170;H0Y586_HUMAN_00166;PSA7_HUMAN_00157 1972 EKAAKWKNPDGHM wildtype peptide E3 ubiquitin-protein ligase pellino homolog 2 1973 GHNSDGKFIARAQ wildtype peptide Protein RCC2 1974 RHSYFEKPKVDDE wildtype peptide Protein Red 1975 HKFAGDKGYLTKE wildtype peptide Protein S100-A10 1976 AVDKIMKDLDQCR wildtype peptide Protein S100-A10 1977 MVSTFHKYSGKEG wildtype peptide Protein S100-A4 1978 VDVKKSKFCEADV wildtype peptide Putative UPF0609 protein C4orf27-like Pyruvate dehydrogenase E1 component subunit alpha, somatic 1979 DPIMLLKDRMVNS wildtype peptide form, mitochondrial Q5JPU3_HUMAN_00040;ODPA_HUMAN_00328;ODPA_HUMAN_00290;ODPA_HUMAN_00359 E7EUQ8_HUMAN_00062;H3BQ34_HUMAN_00062;H3BT25_HUMAN_00062;H3BTJ2_HUMAN_000 62;H3BTN5_HUMAN_00062;H3BU13_HUMAN_00062;H3BUW1_HUMAN_00062;KPYM_HUMAN_0 1980 RSVETLKEMIKSG wildtype peptide Pyruvate kinase isozymes M1/M2 0062 1981 AIIVLTKSGRSAH wildtype peptide Pyruvate kinase isozymes M1/M2 E9PF79_HUMAN_00360;KPYM_HUMAN_00418 1982 EVNYIDKIKKYVG wildtype peptide Quinone oxidoreductase A6NP24_HUMAN_00208;QOR_HUMAN_00071 B4DZM7_HUMAN_00165;E7ERJ8_HUMAN_00191;E9PFK9_HUMAN_00164;H7BYE7_HUMAN_001 1983 FLKTFHKTGQEIY wildtype peptide Rab5 GDP/GTP exchange factor 96;RABX5_HUMAN_00151;RABX5_HUMAN_00191 1984 EIVSGMKYIQHTY wildtype peptide Rho GDP-dissociation inhibitor 1 F5H2R5_HUMAN_00025;F5H3P3_HUMAN_00025;F5H6Q0_HUMAN_00025;H0YGX7_HUMAN_000 1985 DSKLNYKPPPQKS wildtype peptide Rho GDP-dissociation inhibitor 2 20 1986 DIVSGLKYVQHTY wildtype peptide Rho GDP-dissociation inhibitor 2 F5H3P3_HUMAN_00124;H0YGX7_HUMAN_00118 1987 EVAGDDKYGRKII wildtype peptide Rho GTPase-activating protein 1 E9PCG8_HUMAN_00080;E9PNR6_HUMAN_00080;H0YE29_HUMAN_00078 B7Z977_HUMAN_00398;Q5VY93_HUMAN_00354;D3DVA5_HUMAN_00397;F5H3H5_HUMAN_003 1988 KALKLYKELYARD wildtype peptide Rho guanine nucleotide exchange factor 2 26;ARHG2_HUMAN_00352;ARHG2_HUMAN_00325 1989 AMCEMEKKLKEER wildtype peptide Rho-associated protein kinase 1 1990 GMIFYRKGVAVAL wildtype peptide Isoform 2 of Serine hydroxymethyltransferase, cytosolic B4DLV4_HUMAN_00173;B7Z9F1_HUMAN_00248;G3V2Y4_HUMAN_00108;G3V4W5_HUMAN_002 1991 VIPSPFKHADIVT wildtype peptide Serine hydroxymethyltransferase, mitochondrial 28;H0YIZ0_HUMAN_00069;GLYM_HUMAN_00259 Acetylome - Acetyltransferase Microarray page 56 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 1992 AKLQDFKSFLLKD wildtype peptide Serine hydroxymethyltransferase, mitochondria B4DLV4_HUMAN_00373;B7Z9F1_HUMAN_00448;GLYM_HUMAN_00459 1993 GERPDYKGEEELR wildtype peptide Serine/arginine repetitive matrix protein 2 1994 EKVLNSKTIRSNS wildtype peptide Serine/threonine-protein kinase Nek9 1995 AVLDVLKFYDSNT wildtype peptide Serine/threonine-protein kinase PAK 2 1996 MEPPRFKINKKIP wildtype peptide SNW domain-containing protein 1 E9PGQ7_HUMAN_00213;G3V3A4_HUMAN_00213;G3V4X8_HUMAN_00051

1997 SAEFLEKRRAALE wildtype peptide Sorting nexin-1 A6NKH4_HUMAN_00237;H0Y2M5_HUMAN_00237;H0YK42_HUMAN_00019;SNX1_HUMAN_00172 1998 SVNHRYKHFDWLY wildtype peptide Sorting nexin-9 B4DGT1_HUMAN_00779;A6NG51_HUMAN_00779;F8W7K3_HUMAN_00779;SPTA2_HUMAN_007 1999 MVARKQKLADSLR wildtype peptide Spectrin alpha chain, brain 79;SPTA2_HUMAN_00779 B4DGT1_HUMAN_01022;A6NG51_HUMAN_01022;F8W7K3_HUMAN_01022;SPTA2_HUMAN_010 2000 VPAAYVKKLDPAQ wildtype peptide Spectrin alpha chain, brain 22;SPTA2_HUMAN_01022

2001 KFYHDAKEIFGRI wildtype peptide Spectrin beta chain, brain 1 B2ZZ89_HUMAN_01815;D6W5C0_HUMAN_01729;SPTB2_HUMAN_01815;SPTB2_HUMAN_01802 2002 LASEAEKAEQINQ wildtype peptide Stomatin-like protein 2 B4E1K7_HUMAN_00188;F2Z2I8_HUMAN_00044 2003 LAYGLDKSEDKVI wildtype peptide Stress-70 protein, mitochondrial B7Z4V2_HUMAN_00220;F5H3L8_HUMAN_00187 2004 MVKNAEKYAEEDR wildtype peptide Stress-70 protein, mitochondrial B7Z4V2_HUMAN_00553;F5H3L8_HUMAN_00520;H0Y8S0_HUMAN_00089 2005 HYTEAIKRNPKDA wildtype peptide Stress-induced-phosphoprotein 1 F5H0T1_HUMAN_00364;G3XAD8_HUMAN_00435 2006 EQQQIEKEIKEKD wildtype peptide Structural maintenance of chromosomes protein 1A 2007 GLQMRLKYSQSDL wildtype peptide Structural maintenance of chromosomes protein 1A 2008 HGSDEVKFRQDLM wildtype peptide T-complex protein 1 subunit beta F5GWF6_HUMAN_00154;F8VQ14_HUMAN_00154;TCPB_HUMAN_00107 2009 NVLLIQKSILRDA wildtype peptide T-complex protein 1 subunit delta B7Z2F4_HUMAN_00152;B7Z9L0_HUMAN_00246;F5H5W3_HUMAN_00272 B4DYD8_HUMAN_00130;B7ZAR1_HUMAN_00185;E7EWW2_HUMAN_00196;E9PCA1_HUMAN_0 2010 GRLEDTKLIKGVI wildtype peptide T-complex protein 1 subunit epsilon 0202;E7ENZ3_HUMAN_00168 B7Z1C9_HUMAN_00192;B8ZZC9_HUMAN_00278;F5GZK5_HUMAN_00220;TCPH_HUMAN_00116 2011 VPEEDLKRTMMAC wildtype peptide T-complex protein 1 subunit eta ;TCPH_HUMAN_00276;TCPH_HUMAN_00233 2012 MLKEGAKHFSGLE wildtype peptide T-complex protein 1 subunit theta G5E9B2_HUMAN_00020;H7C4C8_HUMAN_00012 2013 ZZMAAVKTLNPKA wildtype peptide T-complex protein 1 subunit zeta 2014 HSKEVIKPYDWTY wildtype peptide TIP41-like protein 2015 LRDMFYKILHGFK wildtype peptide Transportin-2 Q4LE60_HUMAN_01016;TNPO2_HUMAN_00852 2016 PFIYGHKYDFTSS wildtype peptide Trans-2,3-enoyl-CoA reductase 2017 FAADAVKLERMLT wildtype peptide Transaldolase 2018 AKEYVIKACSRKL wildtype peptide Transcription elongation factor SPT6 2019 GLHREGKPINLSH wildtype peptide Transcription factor ETV6 2020 GQQQVFKGLNDKV wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 2021 IYQEGVKRKDLNS wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 2022 EGVDPKKLDSLTT wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 2023 YVSQDPKDQLLLG wildtype peptide Trifunctional enzyme subunit beta, mitochondrial B4E2W0_HUMAN_00326;B5MD38_HUMAN_00225;F5GZQ3_HUMAN_00333 2024 YPGDYTKGVEITG wildtype peptide Trifunctional purine biosynthetic protein adenosine-3 2025 KLRGWLKSNVSDA wildtype peptide Triosephosphate isomerase B7Z5D8_HUMAN_00112;TPIS_HUMAN_00194 2026 EKEAQKKREEEHK wildtype peptide Ubinuclein-1 2027 KQDEWIKFDDDKV wildtype peptide Ubiquitin carboxyl-terminal hydrolase 14 B7Z4N8_HUMAN_00438;A6NJA2_HUMAN_00414 2028 KHAFSLKQLDNPA wildtype peptide Ubiquitin carboxyl-terminal hydrolase 5 2029 RYTYLEKAIKIHN wildtype peptide Ubiquitin carboxyl-terminal hydrolase 7 B7Z815_HUMAN_01080;F5H8E5_HUMAN_00997 2030 HFNKAPKRSRYTY wildtype peptide Ubiquitin carboxyl-terminal hydrolase 7 B7Z815_HUMAN_01071;F5H8E5_HUMAN_00988 2031 ALKRIHKELNDLA wildtype peptide Ubiquitin-conjugating enzyme E2 D2 2032 NTPRRNKLDHYAI wildtype peptide 60S ribosomal protein L23a 2033 AWTEDSKRIAVVG wildtype peptide WD repeat-containing protein 1 A8MVA9_HUMAN_00115;D6RD66_HUMAN_00119 2034 EKLLHEKLRFSGV wildtype peptide Zinc finger MYM-type protein 3 A6NHB5_HUMAN_00647;A6NHN7_HUMAN_00647;ZMYM3_HUMAN_00645 2035 QFTGIKKYFNSYT wildtype peptide Up-regulated during skeletal muscle growth protein 5 Acetylome - Acetyltransferase Microarray page 57 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2036 NELQTDKPFIPLV wildtype peptide UPF0364 protein C6orf211 2037 TQAALTKHLLKSV wildtype peptide E3 UFM1-protein ligase 1 E5RFP6_HUMAN_00062;E5RHE1_HUMAN_00061;E5RHZ6_HUMAN_00061;E5RJN6_HUMAN_00 2038 SGNLETKYKVCNY wildtype peptide Voltage-dependent anion-selective channel protein 3 061;E5RK27_HUMAN_00029;F5H740_HUMAN_00062;VDAC3_HUMAN_00062 E5RFL1_HUMAN_00015;E5RFP6_HUMAN_00015;E5RHE1_HUMAN_00015;E5RHZ6_HUMAN_000 15;E5RJN6_HUMAN_00015;F5H740_HUMAN_00015;F8W7Y3_HUMAN_00015;VDAC3_HUMAN_0 2039 DLGKAAKDVFNKG wildtype peptide Voltage-dependent anion-selective channel protein 3 0015 2040 KGYQWLKDKVQSE wildtype peptide Voltage-gated potassium channel subunit beta-3 2041 QKEHLLKYEYQPF wildtype peptide WD repeat-containing protein 1 A8MVA9_HUMAN_00095;D6RD66_HUMAN_00099 C9JQ19_HUMAN_00020;WDR48_HUMAN_00020;WDR48_HUMAN_00569;WDR48_HUMAN_0049 2042 HASSGAKTLKKDR wildtype peptide WD repeat-containing protein 48 6;WDR48_HUMAN_00303 2043 KTQRKAKQAETLT wildtype peptide WD repeat-containing protein 70 2044 QLYLLEKEKKALE wildtype peptide Colorectal mutant cancer protein D6REY2_HUMAN_00578;CRCM_HUMAN_00831 F8VNX2_HUMAN_00010;F8VNZ1_HUMAN_00113;F8VP00_HUMAN_00010;F8VSF5_HUMAN_000 10;F8VSF7_HUMAN_00010;F8VSL1_HUMAN_00010;F8VTQ3_HUMAN_00084;F8VTT5_HUMAN_0 0113;F8VUB8_HUMAN_00081;F8VVE3_HUMAN_00113;F8VW30_HUMAN_00010;F8VX13_HUMA N_00010;F8VYK8_HUMAN_00081;F8VZ53_HUMAN_00010;F8VZI0_HUMAN_00043;F8VZQ1_HUM 2045 EEHHAAKTLGIGK wildtype peptide 6-phosphofructokinase, muscle type AN_00010;F8W1J8_HUMAN_00010;K6PF_HUMAN_00010 2046 PKFKVEKMIDPKA wildtype peptide Serpin B5 2047 KLADIVKINNQLR wildtype peptide DNA-directed RNA polymerase II subunit RPB1 2048 GDGTQNKRKIALE wildtype peptide mRNA cap guanine-N7 methyltransferase 2049 VRFGWVKGVMIRC wildtype peptide Solute carrier family 12 member 3 S12A3_HUMAN_00140;S12A3_HUMAN_00139 2050 SRVGSKKPPERVE wildtype peptide BTB/POZ domain-containing protein KCTD7 2051 VAFYKKKLELKED wildtype peptide Unhealthy ribosome biogenesis protein 2 homolog 2052 HLQRHLKGQNCLE wildtype peptide Zinc finger and BTB domain-containing protein 7B 2053 VLWDINKHGLEET wildtype peptide Estradiol 17-beta-dehydrogenase 11 RBMX_HUMAN_00072;RMXL1_HUMAN_00072;H0Y6E7_HUMAN_00074;H3BT71_HUMAN_00072 2054 ARDMNGKSLDGKA wildtype peptide RNA-binding motif protein, X-linked-like-2 RBMX_HUMAN_00059 2055 EQAEIYKSKLKEE wildtype peptide Meiosis-specific nuclear structural protein 1 2056 QLFAKNKESQREK wildtype peptide Angiomotin A6NP16_HUMAN_00313;E7ERM3_HUMAN_00313;AMOT_HUMAN_00136 2057 QPKKQPKKDEEGQ wildtype peptide PC4 and SFRS1-interacting protein 2058 EDEKPPKKSLLSK wildtype peptide DNA repair protein complementing XP-C cells E7EUB5_HUMAN_00038;E9PB96_HUMAN_00044;E9PH69_HUMAN_00044 2059 KKRLQEKCQALER wildtype peptide Optineurin OPTN_HUMAN_00327;OPTN_HUMAN_00276 2060 YTITPVKMRKSGG wildtype peptide 39S ribosomal protein L2, mitochondrial C9IY40_HUMAN_00078;C9JZG7_HUMAN_00078;C9JZW2_HUMAN_00078 2061 IEPGYFKTAVTSK wildtype peptide Retinol dehydrogenase 16 2062 KNEELAKRAKKLL wildtype peptide Mediator of RNA polymerase II transcription subunit 26 2063 ZMKFICKDFWTTV wildtype peptide Trafficking protein particle complex subunit 6B G3V2H7_HUMAN_00070;TPC6B_HUMAN_00071 2064 KSRKASKEQGPTP wildtype peptide Chromodomain-helicase-DNA-binding protein 6 C9JFU2_HUMAN_00186;CHD6_HUMAN_00221;CHD6_HUMAN_00186

2065 LTEEDQKKLHDFE wildtype peptide Transient receptor potential cation channel subfamily M member 7 G5E9N3_HUMAN_00122;H7BZ16_HUMAN_00122;H7BZ81_HUMAN_00022;RETST_HUMAN_0018 2066 IQGLKEKFPQEEA wildtype peptide All-trans-retinol 13,14-reductase 3 2067 TKQKLEKAENQVL wildtype peptide B-cell receptor-associated protein 31 C9J813_HUMAN_00390;E7EUR9_HUMAN_00024;E7EX44_HUMAN_00410;E9PGZ1_HUMAN_003 84;F5H1Z9_HUMAN_00395;CALD1_HUMAN_00416;CALD1_HUMAN_00410;CALD1_HUMAN_003 2068 PKGSSLKIEERAE wildtype peptide Caldesmon 90;CALD1_HUMAN_00384;CALD1_HUMAN_00416 B4DR12_HUMAN_00259;E9PB19_HUMAN_00260;H3BQ05_HUMAN_00259;MGRN1_HUMAN_002 2069 IYGIENKNNQETK wildtype peptide E3 ubiquitin-protein ligase MGRN1 59;MGRN1_HUMAN_00259;MGRN1_HUMAN_00259 2070 YVAVMLKVADHSG wildtype peptide COMM domain-containing protein 6 B0QZ40_HUMAN_00063;COMD6_HUMAN_00048 Acetylome - Acetyltransferase Microarray page 58 of 167

Sequence PEP_FLAG Protein name Uniprot IDs E9PH98_HUMAN_00438;G3V0G4_HUMAN_00106;ACSF4_HUMAN_00491;ACSF4_HUMAN_00591 2071 SGGDSLKSIRLLS wildtype peptide Acyl-CoA synthetase family member 4 ;ACSF4_HUMAN_00591 2072 RKHKSKKKFKNPN wildtype peptide Glutamate-rich protein 1 B4DMI5_HUMAN_00121;E5RHA3_HUMAN_00027 2073 KLIQILKGQSLLQ wildtype peptide Flap endonuclease GEN homolog 1 E7ETY2_HUMAN_01346;E9PHK9_HUMAN_01383;TCOF_HUMAN_01269;TCOF_HUMAN_01347;T 2074 KGWESRKRKLSGD wildtype peptide Treacle protein COF_HUMAN_01382;TCOF_HUMAN_01308;TCOF_HUMAN_01309;TCOF_HUMAN_01270 2075 VADSKKKGHKNNV wildtype peptide Nuclear receptor-interacting protein 1 2076 EKAIKEKEYEIER wildtype peptide Desmoplakin 2077 KCNKCGKAFSQKE wildtype peptide Zinc finger protein 260 2078 AEASSPKGKFSLF wildtype peptide Neuroblast differentiation-associated protein AHNAK 2079 RCRECGKSFSQKS wildtype peptide Zinc finger protein 793 ZN793_HUMAN_00346;E9PGN4_HUMAN_00346;ZN793_HUMAN_00252 2080 KRGQKRKSGYSLN wildtype peptide Bromodomain adjacent to zinc finger domain protein 2A F8VU39_HUMAN_01744;BAZ2A_HUMAN_01719;BAZ2A_HUMAN_01742 2081 EKKDGDKKKKKTK wildtype peptide Putative heat shock protein HSP 90-alpha A2 E7EW20_HUMAN_00334;MYO6_HUMAN_00334;MYO6_HUMAN_00334;MYO6_HUMAN_00334;M 2082 GLDDEEKLDLFRV wildtype peptide Unconventional myosin-VI YO6_HUMAN_00334;MYO6_HUMAN_00334 2083 KDVKEFKPESSLT wildtype peptide Androglobin F5H6H2_HUMAN_00331;BAZ2B_HUMAN_00392;BAZ2B_HUMAN_00394;BAZ2B_HUMAN_00198; 2084 SLVNQAKKETYMK wildtype peptide Bromodomain adjacent to zinc finger domain protein 2B BAZ2B_HUMAN_00392 D6RAQ1_HUMAN_00098;D6RHG4_HUMAN_00098;E9PCA9_HUMAN_00098;E9PGR1_HUMAN_0 2085 LRFGGTKTDFLIF wildtype peptide Heparanase 0098;E9PHC3_HUMAN_00098 2086 KLLDDIKMLNKPK wildtype peptide Syntaxin-binding protein 3 E3W983_HUMAN_00086;E5RFX0_HUMAN_00052;E5RHI1_HUMAN_00086;HACE1_HUMAN_0008 2087 CLVLLLKKGANPN wildtype peptide E3 ubiquitin-protein ligase HACE1 6 2088 QTNEILKIHEKNS wildtype peptide Angiopoietin-1 D3DPF9_HUMAN_10229;D3DPG0_HUMAN_18245;E7ENC6_HUMAN_10227;TITIN_HUMAN_1035 4;TITIN_HUMAN_16726;TITIN_HUMAN_17561;TITIN_HUMAN_10229;TITIN_HUMAN_16748;TITIN 2089 PEDLEVKEVTKNT wildtype peptide Titin _HUMAN_16203;TITIN_HUMAN_16918;TITIN_HUMAN_17778;TITIN_HUMAN_10421 2090 LLASNKKKWEQAL wildtype peptide Coiled-coil domain-containing protein 164 2091 KKNKVEKKLEEKE wildtype peptide Sperm flagellar protein 2 D6REZ4_HUMAN_00886;SPEF2_HUMAN_00886 2092 LVGKYTKFSDSYA wildtype peptide CTP synthase 1 F5H3X5_HUMAN_00386;F8WCY9_HUMAN_00386;AKAP9_HUMAN_00374;AKAP9_HUMAN_0037 2093 QKNQEIKNMKLEL wildtype peptide A-kinase anchor protein 9 4;AKAP9_HUMAN_00386;AKAP9_HUMAN_00386;AKAP9_HUMAN_00386 2094 PPSCKRKVGGTSG wildtype peptide BRCA1-associated RING domain protein 1 2095 EEVILKKMSPQEL wildtype peptide Transcription termination factor 1 2096 QAKKEDKETSAKR wildtype peptide Ubiquitin carboxyl-terminal hydrolase 8 2097 SKEKQEKITDTFK wildtype peptide G/T mismatch-specific thymine DNA glycosylase F5H0I7_HUMAN_00097;F5H539_HUMAN_00072;G8JL98_HUMAN_00093 2098 DLSEALKEATKEV wildtype peptide Heme oxygenase 1 2099 PETPKQKGESRPE wildtype peptide Nipped-B-like protein NIPBL_HUMAN_00706;NIPBL_HUMAN_00706 2100 YNADGGKMPIKWM wildtype peptide Receptor tyrosine-protein kinase erbB-4 ERBB4_HUMAN_00871;ERBB4_HUMAN_00881;ERBB4_HUMAN_00871 FCGRB_HUMAN_00241;H0Y355_HUMAN_00226;FCGRC_HUMAN_00241;FCGRB_HUMAN_0014 2101 LDSGHEKKVISSL wildtype peptide High affinity immunoglobulin gamma Fc receptor I 9 2102 CLRACKKGFIQRI wildtype peptide Tissue factor pathway inhibitor B7Z6Q6_HUMAN_00235;B7Z7M6_HUMAN_00163;Q5JR89_HUMAN_00267;Q5JR91_HUMAN_002 2103 KQELAKKEIDVIS wildtype peptide Kinesin-like protein KIF2C 35;KIF2C_HUMAN_00222 2104 KKESKKKTLKNDC wildtype peptide HIV Tat-specific factor 1 2105 HESDSKKSEDLSL wildtype peptide TIR domain-containing adapter molecule 2 2106 RDKEIKKLNEEIE wildtype peptide Serine/threonine-protein kinase MRCK beta

2107 CANKLDKKDFFGK wildtype peptide Copine-8 CPNE9_HUMAN_00161;CPNE5_HUMAN_00190;E7ENV7_HUMAN_00159;CPNE9_HUMAN_00161 2108 MLWLSEKLREVYR wildtype peptide 6-phosphofructokinase, liver type F5H3H2_HUMAN_00482;K6PL_HUMAN_00736 Acetylome - Acetyltransferase Microarray page 59 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2109 NLAILEKIKKNQR wildtype peptide Ubiquitin-conjugating enzyme E2 Q1 2110 TTRCPYKDTLGPM wildtype peptide Eukaryotic translation initiation factor 3 subunit G 2111 LKEMFAKKHAAYA wildtype peptide Bromodomain-containing protein 4 Q4G0X8_HUMAN_00367;E7ESP5_HUMAN_00367;BRD4_HUMAN_00367 2112 LIWTNDKTTADPF wildtype peptide Synaptotagmin-12 Q5JV20_HUMAN_00550;E7ENN3_HUMAN_08007;E7EQI5_HUMAN_08395;E9PEL9_HUMAN_083 47;F5GXQ9_HUMAN_00575;F8WAI0_HUMAN_00573;H0Y325_HUMAN_01340;H0Y326_HUMAN_0 1041;SYNE1_HUMAN_02919;SYNE1_HUMAN_00580;SYNE1_HUMAN_08347;SYNE1_HUMAN_02 2113 RLEHKLKEEEESL wildtype peptide Nesprin-1 810;SYNE1_HUMAN_00575 2114 PIGCDAKGRIVLG wildtype peptide Aryl hydrocarbon receptor 2115 DRSRLVKQMEDKV wildtype peptide Cingulin-like protein 1 B3KY57_HUMAN_00351;Q3B7B7_HUMAN_00316;B8ZZU6_HUMAN_00258;E9PBF9_HUMAN_003 74;F5H629_HUMAN_00356;G8JLM5_HUMAN_00356;H7C2N6_HUMAN_00203;ATF2_HUMAN_001 2116 RCRQKRKVWVQSL wildtype peptide Cyclic AMP-dependent transcription factor ATF-2 98 2117 NTFPTFKFEDPKF wildtype peptide ATP synthase-coupling factor 6, mitochondrial 2118 KKKKGKKGKKDSS wildtype peptide Transcriptional regulator ATRX ATRX_HUMAN_01732;ATRX_HUMAN_01819;ATRX_HUMAN_01898;ATRX_HUMAN_01781 H0YF38_HUMAN_00149;E9PE65_HUMAN_00154;F8W807_HUMAN_00179;H7BXJ9_HUMAN_000 2119 DLKMDCKEYNYDK wildtype peptide Beta-secretase 1 45;BACE1_HUMAN_00254;BACE1_HUMAN_00235;BACE1_HUMAN_00210 H0YF38_HUMAN_00177;E9PE65_HUMAN_00182;F8W807_HUMAN_00207;H7BXJ9_HUMAN_000 2120 VFEAAVKSIKAAS wildtype peptide Beta-secretase 1 73;BACE1_HUMAN_00282;BACE1_HUMAN_00263;BACE1_HUMAN_00238 2121 CNWKKYKFIVLNS wildtype peptide B-cell lymphoma 6 protein 2122 HRKTGQKVALKKV wildtype peptide Cyclin-dependent kinase 9 2123 EEIKSSKDQLKEL wildtype peptide Centromere protein F 2124 GGGGKWKREEGGG wildtype peptide Choline O-acetyltransferase CHD5_HUMAN_00175;E9PG89_HUMAN_00235;F2Z2R5_HUMAN_00175;H7C2H0_HUMAN_00051 2125 RPLIAKKNPKIPM wildtype peptide Chromodomain-helicase-DNA-binding protein 3 ;CHD3_HUMAN_00176 F5GWX5_HUMAN_00268;F5H2G1_HUMAN_00249;F5H6N4_HUMAN_00275;CHD4_HUMAN_0027 2126 NARRKPKGSPRVP wildtype peptide Chromodomain-helicase-DNA-binding protein 4 5 2127 NKKKKKKLKDKKE wildtype peptide Chromodomain-helicase-DNA-binding protein 5 2128 QEENTEKLKLKYY wildtype peptide 26S proteasome non-ATPase regulatory subunit 12 2129 RRRGADKAKPPPG wildtype peptide 26S proteasome non-ATPase regulatory subunit 3 2130 KDPAYLKDPKVCN wildtype peptide 28S ribosomal protein S18c, mitochondrial D6RCM2_HUMAN_00103;H0YAG5_HUMAN_00102 2131 CQRFVEKYTELQK wildtype peptide 28S ribosomal protein S23, mitochondrial 2132 PEKLSHKLLEAFH wildtype peptide 28S ribosomal protein S7, mitochondrial

2133 KLQELEKYPGIQT wildtype peptide 3-hydroxybutyrate dehydrogenase type 2 D6R9U8_HUMAN_00048;D6RFG2_HUMAN_00048;D6RIR6_HUMAN_00048;BDH2_HUMAN_00048 2134 QLKSFQKIQVRLV wildtype peptide 40S ribosomal protein S7 Q57Z92_HUMAN_00074;B5MCP9_HUMAN_00074 2135 SNGRQWKPQLGFN wildtype peptide 5-3 exoribonuclease 2 B4DZC3_HUMAN_00742;XRN2_HUMAN_00720 2136 AVMDTKKKKDVSS wildtype peptide 5-AMP-activated protein kinase subunit gamma-2 2137 KRVLPGKYLEEIA wildtype peptide 6-phosphofructokinase type C Q5VSR7_HUMAN_00478;H0Y3P8_HUMAN_00475;H0Y3Y3_HUMAN_00050 2138 VGAQSLKEMVSKL wildtype peptide 6-phosphogluconate dehydrogenase, decarboxylating B4DQJ8_HUMAN_00046;F5H7U0_HUMAN_00059 2139 PISDSPKPPPQRV wildtype peptide 6-phosphogluconolactonase 2140 RAMELLKVSKDKR wildtype peptide 60S ribosomal protein L36 2141 PPGLAVKELKZZZ wildtype peptide 60S ribosomal protein L38 2142 KLNPYAKTMRRNT wildtype peptide 60S ribosomal protein L4 E7EWF1_HUMAN_00333;H3BM89_HUMAN_00239;H3BU31_HUMAN_00132 2143 NKYNTPKYRMIVR wildtype peptide 60S ribosomal protein L5 2144 LTDAYFKKKKLRK wildtype peptide 60S ribosomal protein L6 2145 YKRGYGKINKKRI wildtype peptide 60S ribosomal protein L7 2146 KVEELKKKYGIZZ wildtype peptide Acyl-CoA-binding protein ACBP_HUMAN_00100;ACBP_HUMAN_00084;ACBP_HUMAN_00125;ACBP_HUMAN_00144 C9J7L8_HUMAN_00043;H7C5Q2_HUMAN_00057;ACOT9_HUMAN_00070;ACOT9_HUMAN_00043 2147 EPELREKYLTVQN wildtype peptide Acyl-coenzyme A thioesterase 9, mitochondrial ;ACOT9_HUMAN_00112 Acetylome - Acetyltransferase Microarray page 60 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2148 ZMTVFFKTLRNHW wildtype peptide Acylglycerol kinase, mitochondrial E9PG39_HUMAN_00007;F8WDD1_HUMAN_00007;AGK_HUMAN_00007 2149 QPNWSPKVVELCK wildtype peptide Adenosine deaminase F5GWI4_HUMAN_00164;F5GXW0_HUMAN_00164 E7EWH4_HUMAN_00093;F8VY04_HUMAN_00051;F8VZG5_HUMAN_00093;F8W1A4_HUMAN_00 093;G3V213_HUMAN_00093;KAD2_HUMAN_00093;KAD2_HUMAN_00093;KAD2_HUMAN_00046; 2150 LETPLCKNGFLLD wildtype peptide Adenylate kinase 2, mitochondrial KAD2_HUMAN_00093;KAD2_HUMAN_00046 Q5T0R1_HUMAN_00209;Q5T0R9_HUMAN_00208;Q5T0S3_HUMAN_00060;D3DPU2_HUMAN_00 2151 TGLAWSKTGPVAK wildtype peptide Adenylyl cyclase-associated protein 1 209;E7ENY9_HUMAN_00156;F5H6Z3_HUMAN_00186;CAP1_HUMAN_00208 ARP19_HUMAN_00058;H3BMD8_HUMAN_00077;H3BTD3_HUMAN_00042;ENSA_HUMAN_00063 2152 RLQKGQKYFDSGD wildtype peptide Alpha-endosulfine ;ENSA_HUMAN_00059;ENSA_HUMAN_00059;ARP19_HUMAN_00042 2153 AVEHINKTIAPAL wildtype peptide Alpha-enolase 2154 KNVIKEKYGKDAT wildtype peptide Alpha-enolase 2155 QLADLYKSFIKDY wildtype peptide Alpha-enolase 2156 APALVSKKLNVTE wildtype peptide Alpha-enolase 2157 PALVSKKLNVTEQ wildtype peptide Alpha-enolase 2158 TAEELKKFKLKLL wildtype peptide Apoptosis-associated speck-like protein containing a CARD H3BP42_HUMAN_00022;ASC_HUMAN_00022 2159 QPESAEKHVTQRL wildtype peptide Apoptotic chromatin condensation inducer in the nucleus E7EQT4_HUMAN_00677;ACINU_HUMAN_00717 2160 DLMEYAKQHGIPI wildtype peptide Argininosuccinate synthase Q5T6L5_HUMAN_00146;Q5T6L6_HUMAN_00165 2161 TEEEFKKRAYQCV wildtype peptide Arginine--tRNA ligase, cytoplasmic F5H3T8_HUMAN_00082;SYRC_HUMAN_00216 2162 RGENMSKILKARS wildtype peptide Asparagine--tRNA ligase, cytoplasmic 2163 FLQRFFKFSRDVF wildtype peptide Aspartate aminotransferase, mitochondrial 2164 VLKLEAKTDPSIL wildtype peptide ATP synthase subunit O, mitochondrial 2165 ELDPIQKLFVDKI wildtype peptide ATP synthase-coupling factor 6, mitochondrial 2166 EVAFFDKTRTGEL wildtype peptide ATP-binding cassette sub-family B member 10, mitochondrial 2167 ELMQVLKDLNHGK wildtype peptide ATP-binding cassette sub-family D member 3 E7EUE1_HUMAN_00423;F5GYC1_HUMAN_00326;ABCD3_HUMAN_00289 2168 KKMCMYKYPGMKK wildtype peptide ATP-binding cassette sub-family E member 1 2169 KFYWGHKEILIPV wildtype peptide ATP-citrate synthase B4E3P0_HUMAN_00275;E7ENH9_HUMAN_00600;ACLY_HUMAN_00536 B7WNZ6_HUMAN_00027;E7EPN9_HUMAN_00027;E9PF21_HUMAN_00027;PRC2C_HUMAN_000 27;PRC2C_HUMAN_00027;PRC2C_HUMAN_00027;PRC2C_HUMAN_00027;PRC2C_HUMAN_000 2170 SLFNTYKGKSLET wildtype peptide Protein PRRC2C 27 E9PK09_HUMAN_00335;E9PK91_HUMAN_00335;E9PKI6_HUMAN_00335;E9PQN2_HUMAN_003 2171 ETAKTGKFLKRFT wildtype peptide Bcl-2-associated transcription factor 1 33;H0YF00_HUMAN_00076;BCLF1_HUMAN_00333;BCLF1_HUMAN_00333

2172 ARLSNGKYPKAPE wildtype peptide BCL-6 corepressor H7BYY2_HUMAN_00392;BCOR_HUMAN_00392;BCOR_HUMAN_00392;BCOR_HUMAN_00392 2173 ICSANHKESKMTI wildtype peptide Beta-crystallin A3 2174 FEGANFKGNTIEI wildtype peptide Beta-crystallin B1 2175 TPAEQMKAEREQR wildtype peptide Bifunctional glutamate/proline--tRNA ligase E7EMN0_HUMAN_00324;F5H7I7_HUMAN_00300 E7EMB3_HUMAN_00069;E7ETZ0_HUMAN_00023;F8WBR5_HUMAN_00022;G3V479_HUMAN_00 2176 AFSLFDKDGDGTI wildtype peptide Calmodulin 022;H0Y7A7_HUMAN_00060 B4E2T8_HUMAN_00029;D6RB85_HUMAN_00137;D6RDP7_HUMAN_00137;D6RFL1_HUMAN_000 29;D6RGY2_HUMAN_00073;E7ETH2_HUMAN_00073;F5H856_HUMAN_00129;H0Y9H1_HUMAN_ 2177 ISAKLNKPFLFDT wildtype peptide Calnexin 00020;H0Y9Q7_HUMAN_00106 2178 IAAKLAKDREAAE wildtype peptide Calpain-2 catalytic subunit 2179 HKSDFGKFVLSSG wildtype peptide Calreticulin 2180 PSLVASKLAGZZZ wildtype peptide cAMP-regulated phosphoprotein 19 H3BMD8_HUMAN_00128;H3BQ52_HUMAN_00068;ARP19_HUMAN_00093 Q5R211_HUMAN_00055;H0YGP4_HUMAN_00063;C9JTA4_HUMAN_00055;E7EWJ3_HUMAN_00 2181 VLEDGTKMKGYSF wildtype peptide Carbamoyl-phosphate synthase [ammonia], mitochondrial 061 2182 IHDAFVKAFAEAM wildtype peptide Succinate-semialdehyde dehydrogenase, mitochondria C9J8Q5_HUMAN_00330;F5H328_HUMAN_00270;G5E949_HUMAN_00371 2183 LAKNKQKPITPET wildtype peptide Cell division control protein 42 homolog E7ETU3_HUMAN_00177;CDC42_HUMAN_00135 2184 PYEKFSKEELKKA wildtype peptide Cell division cycle 5-like protein 2185 GRFVALKRVRVQT wildtype peptide Cyclin-dependent kinase 6 Acetylome - Acetyltransferase Microarray page 61 of 167

Sequence PEP_FLAG Protein name Uniprot IDs

E7ESS1_HUMAN_00173;P53_HUMAN_00305;P53_HUMAN_00305;P53_HUMAN_00266;P53_HUM 2186 LPPGSTKRALPNN wildtype peptide Cellular tumor antigen p53 AN_00266;P53_HUMAN_00266;P53_HUMAN_00173;P53_HUMAN_00173;P53_HUMAN_00173

E7ESS1_HUMAN_00189;P53_HUMAN_00321;P53_HUMAN_00321;P53_HUMAN_00282;P53_HUM 2187 SPQPKKKPLDGEY wildtype peptide Cellular tumor antigen p53 AN_00282;P53_HUMAN_00282;P53_HUMAN_00189;P53_HUMAN_00189;P53_HUMAN_00189 2188 IYMGKDKYENEDL wildtype peptide Coiled-coil domain-containing protein 25 Q0VGD4_HUMAN_00023;B7Z2L8_HUMAN_00023;G3V121_HUMAN_00023 2189 EASLKRKAEEKLE wildtype peptide Coiled-coil domain-containing protein 75 Complement component 1 Q subcomponent-binding protein, 2190 EIKEERKIQKHKT wildtype peptide mitochondrial 2191 ZZZZMEKSRMNLP wildtype peptide Conserved oligomeric Golgi complex subunit 2 2192 AAKPWTKDHHYFK wildtype peptide COP9 signalosome complex subunit 5 2193 YIPLVKKHCDDSF wildtype peptide Coproporphyrinogen-III oxidase, mitochondria B4DUX0_HUMAN_00083;F5GWE2_HUMAN_00168;BACH_HUMAN_00156;BACH_HUMAN_00156; 2194 KRYEAQKLERMET wildtype peptide Cytosolic acyl coenzyme A thioester hydrolase BACH_HUMAN_00156;BACH_HUMAN_00168;BACH_HUMAN_00147 2195 RKDYGKKYFDEKI wildtype peptide D-beta-hydroxybutyrate dehydrogenase, mitochondria C9J9I4_HUMAN_00049;E5RHM4_HUMAN_00045;E5RJ28_HUMAN_00045;E7EVM5_HUMAN_000 2196 RALNATKLERVFA wildtype peptide DDB1- and CUL4-associated factor 13 45;DCA13_HUMAN_00049 2197 LYFFMRKNFEFNK wildtype peptide Dedicator of cytokinesis protein 10 B3FL70_HUMAN_01587;E7EV00_HUMAN_00131;H7BZ07_HUMAN_00319 2198 YNKILNKYGDMRR wildtype peptide Dedicator of cytokinesis protein 2 B3KXW9_HUMAN_00119;E7ERW7_HUMAN_00550 B4DGE4_HUMAN_00054;D2D4A3_HUMAN_00114;Q5TF55_HUMAN_00098;C9JTC4_HUMAN_000 2199 AALAARKEWDLKP wildtype peptide Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 98;E9PF68_HUMAN_00054 2200 FRKNFFKDWRKEM wildtype peptide DNA topoisomerase 1 2201 KAGVSVKPFQVKN wildtype peptide DNA topoisomerase 2-beta E9PCY5_HUMAN_00368;TOP2B_HUMAN_00368 YBOX1_HUMAN_00081;YBOX2_HUMAN_00116;C9J5V9_HUMAN_00081;E7ETA0_HUMAN_00077 2202 INRNDTKEDVFVH wildtype peptide DNA-binding protein A ;DBPA_HUMAN_00113;DBPA_HUMAN_00113 2203 IFNFVLKAIRPQI wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_00254;PRKDC_HUMAN_00254 2204 SPNLWLKDVLKEE wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_01209;PRKDC_HUMAN_01209 2205 LAMKLLKELHKES wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_03259;PRKDC_HUMAN_03260 EF1A2_HUMAN_00041;Q5JR01_HUMAN_00041;Q6IQ15_HUMAN_00041;F8W6I0_HUMAN_00041 2206 DKRTIEKFEKEAA wildtype peptide Elongation factor 1-alpha 1 A6PW80_HUMAN_00041;E7EPH7_HUMAN_00041;EF1A3_HUMAN_00041 2207 RYEEIVKEVSTYI wildtype peptide Elongation factor 1-alpha 1 Q6IQ15_HUMAN_00151;F8W6I0_HUMAN_00172;EF1A3_HUMAN_00172 2208 DGPKFLKSGDAAI wildtype peptide Elongation factor 1-alpha 1 Q6IQ15_HUMAN_00374;F8W6I0_HUMAN_00393;EF1A3_HUMAN_00395 2209 VKNVSVKDVRRGN wildtype peptide Elongation factor 1-alpha 1 Q6IQ15_HUMAN_00297;F8W6I0_HUMAN_00316;EF1A3_HUMAN_00318 2210 VAVGVIKNVEKKS wildtype peptide Elongation factor 1-alpha 2 Q4VBZ6_HUMAN_00017;E9PBQ9_HUMAN_00017;E9PK01_HUMAN_00017;E9PQZ1_HUMAN_00 017;E9PRY8_HUMAN_00433;F8W934_HUMAN_00335;E9PI39_HUMAN_00017;E9PIZ1_HUMAN_0 0033;E9PJD0_HUMAN_00017;E9PK06_HUMAN_00017;E9PK72_HUMAN_00017;E9PKK3_HUMAN _00017;E9PL12_HUMAN_00017;E9PL71_HUMAN_00017;E9PMW7_HUMAN_00017;E9PN91_HUM AN_00017;E9PNW6_HUMAN_00017;E9PPR1_HUMAN_00017;E9PQ49_HUMAN_00017;H0YCK7_ 2211 IWFDKFKYDDAER wildtype peptide Elongation factor 1-delta HUMAN_00097;EF1D_HUMAN_00383 2212 SAPEPKKPEENPA wildtype peptide Eukaryotic translation initiation factor 4B B4DS13_HUMAN_00539;E7EPC9_HUMAN_00554;E7EX17_HUMAN_00583 IF5A2_HUMAN_00047;C9J4W5_HUMAN_00028;C9J7B5_HUMAN_00047;F8WCJ1_HUMAN_00047 2213 VEMSTSKTGKHGH wildtype peptide Eukaryotic translation initiation factor 5A-1 ;IF5A1_HUMAN_00077 2214 NQYEKHKEVEAAQ wildtype peptide Eukaryotic translation initiation factor 5B 2215 AEAAGGKYRSTVS wildtype peptide Exocyst complex component 4 2216 RAGGVMKIVREHY wildtype peptide Exosome complex exonuclease RRP44 F2Z2C0_HUMAN_00018;RRP44_HUMAN_00018 2217 VVREFMKDTDSIN wildtype peptide Exportin-1 2218 YGPGVAKTGLKAH wildtype peptide Filamin-A A6NDY9_HUMAN_00754;Q5HY54_HUMAN_00781;FLNA_HUMAN_00781 2219 RSPFKVKVLPTHD wildtype peptide Filamin-A A6NDY9_HUMAN_01511;Q5HY54_HUMAN_01538;FLNA_HUMAN_01538 Acetylome - Acetyltransferase Microarray page 62 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2220 PSLDLSKIKVSGL wildtype peptide Filamin-A A6NDY9_HUMAN_00946;Q5HY54_HUMAN_00973;FLNA_HUMAN_00973 E7EN95_HUMAN_00512;FLNB_HUMAN_00681;FLNB_HUMAN_00681;FLNB_HUMAN_00681;FLN B_HUMAN_00681;FLNB_HUMAN_00681;FLNB_HUMAN_00512;FLNB_HUMAN_00681;FLNB_HUM 2221 AGKAPLKIFAQDG wildtype peptide Filamin-B AN_00681 2222 KKKKNAKPLSFKV wildtype peptide Peptidyl-prolyl cis-trans isomerase FKBP3 2223 EQSTIVKERGTVY wildtype peptide Peptidyl-prolyl cis-trans isomerase FKBP4 2224 IMHTAMKYNLGLD wildtype peptide Glutamate dehydrogenase 2, mitochondrial 2225 VHRYVGKEPSGLR wildtype peptide Glutaminase kidney isoform, mitochondrial H7BZD1_HUMAN_00076;GLSK_HUMAN_00311 2226 ALMTDPKLITWSP wildtype peptide Glutathione peroxidase 1 GSTM5_HUMAN_00126;Q5T8Q9_HUMAN_00085;Q5T8R1_HUMAN_00145;E7EWW9_HUMAN_00 2227 FEKLKPKYLEELP wildtype peptide Glutathione S-transferase Mu 1 145;H3BRM6_HUMAN_00092;GSTM1_HUMAN_00126 2228 LKEEFRKEFTKLE wildtype peptide Glutathione S-transferase omega-1 Q5TA02_HUMAN_00120;D3DRA3_HUMAN_00120 Q5TA01_HUMAN_00037;Q5TA02_HUMAN_00037;D3DRA3_HUMAN_00037;F5H7H0_HUMAN_000 2229 KPEWFFKKNPFGL wildtype peptide Glutathione S-transferase omega-1 65 A8K7Q2_HUMAN_00290;E9PKE3_HUMAN_00507;E9PM13_HUMAN_00078;E9PNE6_HUMAN_00 2230 QEAEKYKAEDEKQ wildtype peptide Heat shock cognate 71 kDa protein 380;E9PS65_HUMAN_00117 2231 VQGSTSKHEFQAE wildtype peptide Heat shock protein 75 kDa, mitochondrial 2232 VKEDIAKLLRYES wildtype peptide Heat shock protein 75 kDa, mitochondrial 2233 ITLFVEKERDKEV wildtype peptide Heat shock protein HSP 90-alpha Q86U12_HUMAN_00045;G3V2J8_HUMAN_00155;HS90A_HUMAN_00346 2234 RMKENQKHIYYIT wildtype peptide Heat shock protein HSP 90-alpha Q86U12_HUMAN_00310;HS90A_HUMAN_00611 HS90B_HUMAN_00399;Q86U12_HUMAN_00228;E9PHH7_HUMAN_00037;E9PHI1_HUMAN_0003 7;E9PHI2_HUMAN_00037;H0Y598_HUMAN_00025;H0Y5S7_HUMAN_00025;H0Y6E4_HUMAN_00 2235 EMLQQSKILKVIR wildtype peptide Heat shock protein HSP 90-alpha 025;HS90A_HUMAN_00529 2236 AVVVCPKDEDYKQ wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00534;HNRPU_HUMAN_00590 B2R603_HUMAN_00039;B4DSU6_HUMAN_00039;B4DY08_HUMAN_00039;D3DPI2_HUMAN_000 39;G3V251_HUMAN_00039;G3V2H6_HUMAN_00039;G3V2Q1_HUMAN_00039;G3V3K6_HUMAN_ 00039;G3V4C1_HUMAN_00039;G3V4M8_HUMAN_00039;G3V4W0_HUMAN_00039;G3V555_HUM AN_00039;G3V575_HUMAN_00039;G3V576_HUMAN_00039;G3V5X6_HUMAN_00039;HNRPC_H 2237 VEAIFSKYGKIVG wildtype peptide Heterogeneous nuclear ribonucleoproteins C1/C2 UMAN_00039;HNRPC_HUMAN_00039 High mobility group nucleosome-binding domain-containing protein 2238 AKPAPPKPEPKPR wildtype peptide 3 2239 LKEKYEKDIAAYR wildtype peptide High mobility group protein B1 2240 KQPYEKKAAKLKE wildtype peptide High mobility group protein B1 2241 REEHKKKHPDSSV wildtype peptide High mobility group protein B2 H2A1_HUMAN_00010;H2A1D_HUMAN_00010;H2A2C_HUMAN_00010;H2A2A_HUMAN_00010;H2 A3_HUMAN_00010;H2A2B_HUMAN_00010;H2A1C_HUMAN_00010;H2A1H_HUMAN_00010;H2A1 2242 RGKQGGKARAKAK wildtype peptide Histone H2A type 1-B/E J_HUMAN_00010 2243 ZMSGRGKQGGKVR wildtype peptide Histone H2A.J C9JE22_HUMAN_00007;H2AJ_HUMAN_00007 A6NFA8_HUMAN_00014;A8MQC5_HUMAN_00014;C9J0D1_HUMAN_00014;C9J386_HUMAN_000 2244 KDSGKAKAKAVSR wildtype peptide Histone H2A.V 14;H2AV_HUMAN_00014 2245 KDSGKAKTKAVSR wildtype peptide Histone H2A.Z 2246 GATISKKGFKKAV wildtype peptide Histone H2B type 1-A 2247 AVVKTQKKEGKKR wildtype peptide Histone H2B type 1-A 2248 KKEQENKTLVLSD wildtype peptide Histone-lysine N-methyltransferase MLL3 H7BY37_HUMAN_00308;MLL3_HUMAN_01863;MLL3_HUMAN_02802 H0Y765_HUMAN_00562;H7BY37_HUMAN_01506;H7C2V8_HUMAN_00071;MLL3_HUMAN_03063 2249 TKTLGPKPFQLPF wildtype peptide Histone-lysine N-methyltransferase MLL3 MLL3_HUMAN_04002 2250 SRSRRGKVEAAGP wildtype peptide Histone-lysine N-methyltransferase MLL4 2251 PNQLRWKPFEIPK wildtype peptide Homogentisate 1,2-dioxygenase C9JTX9_HUMAN_00057;E7EUH2_HUMAN_00098 2252 WLQETSKDSSGTK wildtype peptide Host cell factor 1 A6NEM2_HUMAN_02050;H7C1C4_HUMAN_00581;HCFC1_HUMAN_01936 2253 HKTFVEKYEKQIK wildtype peptide Hsp90 co-chaperone Cdc37 Acetylome - Acetyltransferase Microarray page 63 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2254 KRHDLVKLGFKYD wildtype peptide Intron-binding protein aquarius 2255 KSQRIAKFAFDYA wildtype peptide Isocitrate dehydrogenase [NAD] subunit beta, mitochondria IDH3B_HUMAN_00199;IDH3B_HUMAN_00047 2256 KYDGRFKDIFQEI wildtype peptide Isocitrate dehydrogenase [NADP] cytoplasmic 2257 SALATQKYSVAVK wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial 2258 AHGDQYKATDFVA wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial B4DFL2_HUMAN_00128;B4DSZ6_HUMAN_00050 2259 IFDKHYKTDFDKN wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial B4DFL2_HUMAN_00223;B4DSZ6_HUMAN_00145;H0YL11_HUMAN_00166 Q3BDU5_HUMAN_00097;Q5TCJ4_HUMAN_00097;Q6UYC3_HUMAN_00097;LMNA_HUMAN_0009 2260 TLDSVAKERARLQ wildtype peptide Prelamin-A/C 7;LMNA_HUMAN_00097 Q3BDU5_HUMAN_00311;Q5TCI8_HUMAN_00230;Q5TCJ4_HUMAN_00311;Q6UYC3_HUMAN_00 311;D6RAQ3_HUMAN_00212;E7EUI9_HUMAN_00199;LMNA_HUMAN_00311;LMNA_HUMAN_003 2261 QLSQLQKQLAAKE wildtype peptide Prelamin-A/C 11 2262 LKENDIKPLTSFR wildtype peptide Lamin-B receptor C9JXK0_HUMAN_00055;E7EVK9_HUMAN_00055 2263 TALGDKKSLEGDL wildtype peptide Lamin-B1 2264 LLNYAKKESDLNG wildtype peptide Lamin-B1 2265 LLKISEKEEVTTR wildtype peptide Lamin-B2 2266 LKASIKKGEDFVK wildtype peptide Malate dehydrogenase, mitochondrial E9PDB2_HUMAN_00287;G3XAL0_HUMAN_00222 2267 PEFSKVKTKTPKH wildtype peptide Male-specific lethal 1 homolog MSL1_HUMAN_00154;MSL1_HUMAN_00092 2268 PHQQVDKGAIKFV wildtype peptide Malignant T-cell-amplified sequence 1 MCTS1_HUMAN_00087;MCTS1_HUMAN_00100 B7Z895_HUMAN_00085;C9JYW0_HUMAN_00350;F5GYC2_HUMAN_00287;MA7D2_HUMAN_004 2269 DAGEAAKILAEKR wildtype peptide MAP7 domain-containing protein 2 43;MA7D2_HUMAN_00357 2270 QIAAKQKREQMLQ wildtype peptide Mastermind-like protein 1 B3KM87_HUMAN_00184;A8MXP9_HUMAN_00522;D6REM6_HUMAN_00522;H0Y8T4_HUMAN_00 2271 LAEPYGKIKNYIL wildtype peptide Matrin-3 282;MATR3_HUMAN_00234 2272 ESPLLFKFRAKFY wildtype peptide Moesin 2273 YFSIKNKKGSELW wildtype peptide Moesin 2274 RGRFVVKEEKKDS wildtype peptide MORC family CW-type zinc finger protein 2 2275 ESETFAKRAIESL wildtype peptide Mothers against decapentaplegic homolog 4 Q9BYG6_HUMAN_00037;E7EUB6_HUMAN_00037 2276 RWPDLHKNELKHV wildtype peptide Mothers against decapentaplegic homolog 4 Q9BYG6_HUMAN_00106;E7EUB6_HUMAN_00106 B4DIQ0_HUMAN_00368;B4DSJ8_HUMAN_00337;Q5TCW7_HUMAN_00397;MCE1_HUMAN_0039 2277 PRHEKMKTGLIDK wildtype peptide mRNA-capping enzyme 7;MCE1_HUMAN_00397;MCE1_HUMAN_00397 2278 IMRLITKDLSEPY wildtype peptide N-alpha-acetyltransferase 30 2279 LIDEFMKAITDRY wildtype peptide NAD-dependent malic enzyme, mitochondrial 2280 GAGEASKFSDDHY wildtype peptide NAD(P) transhydrogenase, mitochondrial D6RAI5_HUMAN_00100;D6RHU2_HUMAN_00100 B4DLR8_HUMAN_00059;H3BNV2_HUMAN_00038;H3BRK3_HUMAN_00059;NQO1_HUMAN_0005 2281 RKDITGKLKDPAN wildtype peptide NAD(P)H dehydrogenase [quinone] 1 9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2282 NQGFIRKQCVDHY wildtype peptide 10, mitochondrial C9JGP9_HUMAN_00181;E7ESZ7_HUMAN_00181 F8VQS7_HUMAN_00047;F8VRD8_HUMAN_00047;H0YID5_HUMAN_00041;H0YIT1_HUMAN_0002 2283 EDKYGNKYYEDNK wildtype peptide NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 3 2284 FAKEKGKFEDMAK wildtype peptide Nuclear autoantigen Sp-100 2285 GRGGYGKLAQNQZ wildtype peptide Nuclear cap-binding protein subunit 2 B3KSB0_HUMAN_00081;E9PAR5_HUMAN_00098;NCBP2_HUMAN_00133 2286 SLKQTVKANTFGK wildtype peptide Nuclear fragile X mental retardation-interacting protein 2 F5H2L0_HUMAN_00480;H0YFY6_HUMAN_00356;H0YH75_HUMAN_00115;NUMA1_HUMAN_0151 2287 LEVMTAKYEGAKV wildtype peptide Nuclear mitotic apparatus protein 1 1 2288 TSLVFGKKADNEE wildtype peptide Nuclear pore complex protein Nup153 Q4LE47_HUMAN_01100;F6QR24_HUMAN_01151 2289 GSGAGGKPLEGLS wildtype peptide Nuclear pore complex protein Nup50 B0QY21_HUMAN_00083;E9PH35_HUMAN_00083;NUP50_HUMAN_00055 2290 YLDEIVKEVEAKA wildtype peptide Nucleoprotein TPR 2291 LHERNQKLTATTQ wildtype peptide Nucleoprotein TPR 2292 ASEEHLKQHYIDL wildtype peptide Nucleoside diphosphate kinase B Q32Q12_HUMAN_00189;NDK8_HUMAN_00034;NDKB_HUMAN_00164 Acetylome - Acetyltransferase Microarray page 64 of 167

Sequence PEP_FLAG Protein name Uniprot IDs

2293 HGSDSVKSAEKEI wildtype peptide Nucleoside diphosphate kinase B Q32Q12_HUMAN_00264;F6XY72_HUMAN_00049;NDK8_HUMAN_00109;NDKB_HUMAN_00239 2294 RNRKDVKVFNVTK wildtype peptide Cancer-related nucleoside-triphosphatase 2295 RRHLAHKFCLTPA wildtype peptide Nucleosome-remodeling factor subunit BPTF F5GXF5_HUMAN_00678;F5H176_HUMAN_00785;BPTF_HUMAN_00754;BPTF_HUMAN_00880 2296 ASPELQKQIRQLE wildtype peptide Peroxisomal membrane protein 11B E7EWE5_HUMAN_00645;E9PB82_HUMAN_00651;F5HE57_HUMAN_00694;E7EPL9_HUMAN_004 2297 KWTIDLKSGSGKV wildtype peptide Peroxisomal multifunctional enzyme type 2 07;E7ET17_HUMAN_00532;G5E9S2_HUMAN_00529 2298 QSVLNIKYKNDFS wildtype peptide Peroxisome biogenesis factor 2 2299 GPNSFNKGKHGFS wildtype peptide PEST proteolytic signal-containing nuclear protein D3DN52_HUMAN_00171;PCNP_HUMAN_00027 2300 AKTFITKANASAI wildtype peptide PH-interacting protein 2301 ZZZZMAKHHPDLI wildtype peptide PHD finger-like domain-containing protein 5A 2302 PCQDFGKRMFVFK wildtype peptide Pleckstrin PLEC_HUMAN_02731;PLEC_HUMAN_02727;PLEC_HUMAN_02704;PLEC_HUMAN_02704;PLEC_ 2303 IAGLLLKATNEKL wildtype peptide Plectin HUMAN_02708;PLEC_HUMAN_02672;PLEC_HUMAN_02682;PLEC_HUMAN_02690 2304 LPKKPPKPEFGKL wildtype peptide PML-RARA-regulated adapter molecule 1 2305 QDGIGSKAEKTLG wildtype peptide Poly [ADP-ribose] polymerase 1 2306 SAHVLEKGGKVFS wildtype peptide Poly [ADP-ribose] polymerase 1 F5H5I8_HUMAN_00666;G3V2A0_HUMAN_00400;G3XAH6_HUMAN_00650;H0YJL4_HUMAN_0015 2307 TPIVGVKRTSSPH wildtype peptide Poly(A) polymerase alpha 1 2308 NRLALTKTVKDAV wildtype peptide Histone acetyltransferase KAT8 Probable JmjC domain-containing histone demethylation protein 2309 HSIANAKFLETAK wildtype peptide 2C A0T124_HUMAN_00370;JHD2C_HUMAN_00333 2310 FHRFAEKHNFAKP wildtype peptide Probable tRNA(His) guanylyltransferase 2311 SFSDTLKTYFKDG wildtype peptide Programmed cell death protein 10 C9J363_HUMAN_00116;C9J5C3_HUMAN_00179;C9J6F3_HUMAN_00179 2312 NLTSMSKILKCAG wildtype peptide Proliferating cell nuclear antigen 2313 TRLEPLKPLKIKL wildtype peptide Proline-rich protein 12 A6NFN6_HUMAN_00403;PRR12_HUMAN_00402;PRR12_HUMAN_01223 2314 DLQCYVKPTKNMS wildtype peptide Protein Jade-3 2315 EAVSICKGLMTKH wildtype peptide Protein kinase C alpha type KPCA_BOVIN_00570;KPCA_RAT_00570;KPCA_RABIT_00570 KPCB_HUMAN_00197;KPCA_HUMAN_00197;B7Z870_HUMAN_00197;B7Z8Q0_HUMAN_00084;F 2316 LSDPYVKLKLIPD wildtype peptide Protein kinase C gamma type 5H5C4_HUMAN_00197;KPCB_HUMAN_00197 2317 TKLIFAKPINSKA wildtype peptide Protein lin-54 homolog D6REW4_HUMAN_00028;LIN54_HUMAN_00028

Q6V3B1_HUMAN_00057;E7ESS7_HUMAN_00073;G3V2R5_HUMAN_00057;G3V563_HUMAN_000 2318 RAQILDKATEYIQ wildtype peptide Protein max 57;G3V5L1_HUMAN_00030;MAX_HUMAN_00057;MAX_HUMAN_00066;MAX_HUMAN_00066 2319 FRSYYLKPSKMNE wildtype peptide Protein NipSnap homolog 3A 2320 KFAPAPKKGSKKA wildtype peptide Putative histone H2B type 2-C Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 2321 RYYDILKKRLQLP wildtype peptide DHX15 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 2322 RTCTDIKPEWLVK wildtype peptide DHX15 2323 IKIGYGKATPTTR wildtype peptide Putative RNA-binding protein 15 RBM15_HUMAN_00450;RBM15_HUMAN_00450 2324 VTELVTKKKPKAE wildtype peptide Putative rRNA methyltransferase 3 2325 GGTEIGKTLAEKS wildtype peptide Zinc finger Ran-binding domain-containing protein 2 2326 KVYYFSKGTLKIA wildtype peptide Replication protein A 70 kDa DNA-binding subunit Q5SYQ7_HUMAN_00128;Q5SYQ8_HUMAN_00128;Q5SYQ9_HUMAN_00128;H0Y4S2_HUMAN_00 2327 DLAGCIKTLRYCA wildtype peptide Retinal dehydrogenase 1 142 2328 PVQQIMKFKSLDD wildtype peptide Retinal dehydrogenase 1 2329 QQIMKFKSLDDVI wildtype peptide Retinal dehydrogenase 1 2330 SAFQTQKPLKSTS wildtype peptide Retinoblastoma-associated protein Acetylome - Acetyltransferase Microarray page 65 of 167

Sequence PEP_FLAG Protein name Uniprot IDs

A8MTC3_HUMAN_00774;A8MXE8_HUMAN_00774;C9JWB0_HUMAN_00726;E7ETW1_HUMAN_0 2331 GLEQGGKASDGIS wildtype peptide Retinoic acid-induced protein 1 0774;E7EVZ3_HUMAN_00774;RAI1_HUMAN_00727;RAI1_HUMAN_00774;RAI1_HUMAN_00774 B7Z2F6_HUMAN_00318;B7Z959_HUMAN_00225;F5GZU3_HUMAN_00305;F5H0H3_HUMAN_0040 2332 KTELHGKMISVEK wildtype peptide Scaffold attachment factor B1 6;F5H1L1_HUMAN_00370 SAFB1_HUMAN_00428;B7Z2F6_HUMAN_00271;B7Z959_HUMAN_00178;A8MXT5_HUMAN_00429 ;C9JPX0_HUMAN_00325;F5GXS4_HUMAN_00180;F5GZU3_HUMAN_00258;F5H0H3_HUMAN_00 2333 LKNLFSKYGKVVG wildtype peptide Scaffold attachment factor B2 359;F5H1L1_HUMAN_00323 2334 TEKHLQKYLRQDL wildtype peptide Scavenger mRNA-decapping enzyme DcpS B5MCX3_HUMAN_00150;C9J2Q4_HUMAN_00150;H7C2Y0_HUMAN_00045;SEPT2_HUMAN_0022 2335 ADTLTLKERERLK wildtype peptide Septin-2 5

F5GWR9_HUMAN_00101;SEPT9_HUMAN_00334;SEPT9_HUMAN_00188;SEPT9_HUMAN_00101; 2336 THDIEEKGVRMKL wildtype peptide Septin-9 SEPT9_HUMAN_00345;SEPT9_HUMAN_00333;SEPT9_HUMAN_00240;SEPT9_HUMAN_00128 2337 RFYVYNKKKRLVN wildtype peptide Serine beta-lactamase-like protein LACTB, mitochondrial

2338 GLAQIYKKYALQS wildtype peptide Sister chromatid cohesion protein PDS5 homolog B B7Z5S1_HUMAN_00417;E7ENA8_HUMAN_00417;PDS5B_HUMAN_00417;PDS5B_HUMAN_00417 FNBP2_HUMAN_00232;SRGP1_HUMAN_00222;F5H5V9_HUMAN_00102;G5EA48_HUMAN_00182 ;H0Y2P8_HUMAN_00146;H0Y4C3_HUMAN_00092;SRGP3_HUMAN_00222;SRGP3_HUMAN_0022 2339 KKIEKMKEKRQAK wildtype peptide SLIT-ROBO Rho GTPase-activating protein 3 2;SRGP1_HUMAN_00222 2340 YKMMFVKSSGSZZ wildtype peptide Small acidic protein 2341 KEGEYIKLKVIGQ wildtype peptide Small ubiquitin-related modifier 1 B8ZZJ0_HUMAN_00023;B8ZZN6_HUMAN_00023;B9A032_HUMAN_00023 2342 KPKEGVKTENDHI wildtype peptide Small ubiquitin-related modifier 3 B4DUW4_HUMAN_00011;A8MU27_HUMAN_00011;A8MUA9_HUMAN_00011 SWI/SNF-related matrix-associated actin-dependent regulator of 2343 EIQEAIKKPLTQK wildtype peptide chromatin subfamily D member 2 B9EGA3_HUMAN_00148;SMRD2_HUMAN_00164;SMRD2_HUMAN_00137 2344 GFEYQGKTEKHES wildtype peptide Src substrate cortactin H7C314_HUMAN_00200;SRC8_HUMAN_00218;SRC8_HUMAN_00218 2345 SKGFGGKYGVQKD wildtype peptide Src substrate cortactin SRC8_HUMAN_00272;SRC8_HUMAN_00272 2346 YRARVEKVESPAK wildtype peptide Staphylococcal nuclease domain-containing protein 1 2347 SKMAEEKLTHKME wildtype peptide Stathmin 2348 YIPYLTKLKFSLK wildtype peptide Sterile alpha motif domain-containing protein 9 2349 VMRQEGKYPVRND wildtype peptide Sterol 26-hydroxylase, mitochondrial B3KUK2_HUMAN_00084;F5GYZ5_HUMAN_00153;F5H3C5_HUMAN_00084;F5H4R2_HUMAN_001 2350 DFGSFDKFKEKLT wildtype peptide Superoxide dismutase [Mn], mitochondrial 53;G8JLJ2_HUMAN_00045;SODM_HUMAN_00091 2351 SRKKSGKKGQASL wildtype peptide SWI/SNF complex subunit SMARCC1 2352 FHMEQLKYAELRA wildtype peptide SWI/SNF complex subunit SMARCC1 2353 RFALVPKLVKEEV wildtype peptide Synapse-associated protein 1 A8MWU4_HUMAN_00435;SYNRG_HUMAN_00435;SYNRG_HUMAN_00435;SYNRG_HUMAN_005 2354 ALPSMDKYAVFKG wildtype peptide Synergin gamma 13;SYNRG_HUMAN_00352 2355 NSVNILKAHGRSQ wildtype peptide T-complex protein 1 subunit alpha E7EQR6_HUMAN_00044;E7ERF2_HUMAN_00199 2356 LSCGEWKSLVGAT wildtype peptide Threonine synthase-like 1 2357 FSIEDLKAQPKQT wildtype peptide Thymocyte nuclear protein 1 E9PPQ6_HUMAN_00081;THYN1_HUMAN_00081 2358 KTETQEKNTLPTK wildtype peptide Thymosin beta-10 2359 KTETQEKNPLPSK wildtype peptide Thymosin beta-4 2360 KASESSKPWPDAT wildtype peptide Thyroid hormone receptor-associated protein 3 2361 GYKAEGKYKDDPV wildtype peptide Thyroid hormone receptor-associated protein 3 2362 DYRVGDKIATRKA wildtype peptide Transketolase-like protein 1 Q5TYJ8_HUMAN_00232;TKTL1_HUMAN_00232 2363 KRYDGLKYDVKKV wildtype peptide Translin B7Z5D9_HUMAN_00165;E9PGT1_HUMAN_00194 2364 WFFEALKYPKFSK wildtype peptide Transmembrane protein 56 Acetylome - Acetyltransferase Microarray page 66 of 167

Sequence PEP_FLAG Protein name Uniprot IDs E7ETY2_HUMAN_00755;E9PHK9_HUMAN_00755;TCOF_HUMAN_00678;TCOF_HUMAN_00755;T COF_HUMAN_00755;TCOF_HUMAN_00755;TCOF_HUMAN_00755;TCOF_HUMAN_00755;TCOF_ 2365 PTVTQVKAEKQED wildtype peptide Treacle protein HUMAN_00678 2366 QGLEAHKYRNTWD wildtype peptide Tricarboxylate transport protein, mitochondrial 2367 YLCESQKFGELVM wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 2368 HVLFPLKSEFVIL wildtype peptide Tyrosine--tRNA ligase, cytoplasmic 2369 VTQHDSKKAGAEV wildtype peptide Tyrosine--tRNA ligase, cytoplasmic 2370 DMHSAYKHADGKK wildtype peptide U1 small nuclear ribonucleoprotein 70 kDa C9J5L1_HUMAN_00098;C9JDJ7_HUMAN_00068;E7ET15_HUMAN_00098;E7EW00_HUMAN_0009 2371 AKRTLSKKEQEEL wildtype peptide U2 snRNP-associated SURP motif-containing protein 8;H0Y8D9_HUMAN_00100;SR140_HUMAN_00098 2372 VAPVVKKPHIYYG wildtype peptide U4/U6 small nuclear ribonucleoprotein Prp4 2373 MGKTIHKYVHLFP wildtype peptide U5 small nuclear ribonucleoprotein 200 kDa helicase 2374 NPELFIKPNKPVM wildtype peptide UPF0708 protein C6orf162 2375 ITYETLKYISKTP wildtype peptide DNA-directed RNA polymerase III subunit RPC9 2376 EMKSAPKKSKADG wildtype peptide Host cell factor 1 A6NEM2_HUMAN_02073;H7C1C4_HUMAN_00604;HCFC1_HUMAN_01959 2377 IPNFILKMYETNK wildtype peptide Uncharacterized protein KIAA1797 B3KM87_HUMAN_00491;Q68E03_HUMAN_00265;A8MXP9_HUMAN_00877;MATR3_HUMAN_005 2378 SLPHYQKLKKFLN wildtype peptide Matrin-3 41 2379 TEMNYSKYGAKEC wildtype peptide PHD finger protein 14 A8MSQ1_HUMAN_00435;PHF14_HUMAN_00150 2380 FANYIDKVRFLEQ wildtype peptide Vimentin B0YJC4_HUMAN_00120;F5H288_HUMAN_00107 K2C6A_HUMAN_00467;K2C6B_HUMAN_00467;K2C8_HUMAN_00393;VIME_HUMAN_00402;K2C7 _HUMAN_00394;K2C3_HUMAN_00504;K2C5_HUMAN_00472;GFAP_HUMAN_00368;DESM_HUM AN_00407;K2C4_HUMAN_00455;K22E_HUMAN_00482;PERI_HUMAN_00398;K2C6C_HUMAN_00 467;K22O_HUMAN_00487;K2C74_HUMAN_00444;K2C73_HUMAN_00436;B4E192_HUMAN_0034 3;Q9H552_HUMAN_00409;B0YJC4_HUMAN_00402;B0YJC5_HUMAN_00220;E7EQV7_HUMAN_0 0452;E7ES34_HUMAN_00370;E7EU87_HUMAN_00437;E7EUE8_HUMAN_00423;E9PAX3_HUMA N_00368;F5H288_HUMAN_00389;F5H6G5_HUMAN_00427;F5H8K9_HUMAN_00421;F8VS64_HU MAN_00441;F8VXB4_HUMAN_00421;F8W1S1_HUMAN_00458;H0YI76_HUMAN_00180;H0YIC5_H UMAN_00181;H7C5W5_HUMAN_00127;GFAP_HUMAN_00368;GFAP_HUMAN_00368;PERI_HUM 2381 EIATYRKLLEGEE wildtype peptide Keratin, type II cytoskeletal 75 AN_00398 Q5JVS8_HUMAN_00062;B0YJC4_HUMAN_00236;B0YJC5_HUMAN_00054;F5H288_HUMAN_0022 2382 EIAFLKKLHEEEI wildtype peptide Vimentin 3 2383 ARDVFTKGYGFGL wildtype peptide Voltage-dependent anion-selective channel protein 1 C9JI87_HUMAN_00020;E7ER14_HUMAN_00020 2384 SALLDGKNVNAGG wildtype peptide Voltage-dependent anion-selective channel protein 1 B4DKM5_HUMAN_00033;Q5JSD1_HUMAN_00072;Q5JSD2_HUMAN_00072;A2A3S1_HUMAN_00 2385 TGTLETKYKWCEY wildtype peptide Voltage-dependent anion-selective channel protein 2 087;VDAC2_HUMAN_00087;VDAC2_HUMAN_00061 2386 PSLKTFKPIDLSD wildtype peptide Protein FAM195B 2387 AGARREKGEMRFN wildtype peptide 2388 YDSSSSKGRTQKE wildtype peptide Isoform 4 of Inhibitor of growth protein 4 2389 KKAPAKKGEKIPK wildtype peptide Protein HMGN2P42 Q68DV2_HUMAN_00184;E9PHY5_HUMAN_00184;E9PII3_HUMAN_00184;E9PK52_HUMAN_0018 2390 KETQEDKLEGGAA wildtype peptide Band 4.1-like protein 2 4;E9PPD9_HUMAN_00184;E41L2_HUMAN_00184 2391 KTAFKKKDTILSL wildtype peptide Coagulation factor VIII 2392 TNYEAGKDDYVKA wildtype peptide Glutathione S-transferase P 2393 AGKGLGKGGAKCH wildtype peptide Histone H4-like protein type G 2394 ANALAHKYHTKLA wildtype peptide Hemoglobin beta globin chain D6RJC3_HUMAN_00448;E7EQN9_HUMAN_00448;E9PCZ3_HUMAN_00263;E9PHC0_HUMAN_00 2395 SLKNSLKMLSEKT wildtype peptide Type II inositol 3,4-bisphosphate 4-phosphatase 319;F5H4N7_HUMAN_00263 2396 TLKGVIKDKYGKD wildtype peptide Gamma-enolase 2397 SKEVTRKLSEADN wildtype peptide Translocon-associated protein subunit gamma B4E2P2_HUMAN_00103;C9J365_HUMAN_00051;C9JA28_HUMAN_00103 Acetylome - Acetyltransferase Microarray page 67 of 167

Sequence PEP_FLAG Protein name Uniprot IDs A6NML8_HUMAN_00124;C9J6U3_HUMAN_00113;F5H7I1_HUMAN_00124;DIAP2_HUMAN_00124 2398 NLNEEKKAPLRNK wildtype peptide Protein diaphanous homolog 2 DIAP2_HUMAN_00113 2399 ETQDSKKKLGQIR wildtype peptide Coiled-coil domain-containing protein 144A (Fragment) 2400 WSCCRRKTSDFNT wildtype peptide Cysteine and histidine-rich domain-containing protein 1 E9PHZ2_HUMAN_00010;CHRD1_HUMAN_00179 ATP-dependent Clp protease ATP-binding subunit clpX-like, 2401 GSGNSGKGGNQLR wildtype peptide mitochondrial Q9H072_HUMAN_00098;H0YK07_HUMAN_00064;H0YM48_HUMAN_00098 2402 QYIEQFKDTLSTS wildtype peptide Alanine--glyoxylate aminotransferase 2, mitochondria 2403 GELSCSKENCPSV wildtype peptide Ankyrin repeat domain-containing protein 32 2404 LRGMGWKPGEGIG wildtype peptide G patch domain and KOW motifs-containing protein 2405 DVLEFLKVYEKHS wildtype peptide Fructose-1,6-bisphosphatase 1 2406 RFGKKGKLPHQVD wildtype peptide Dynein heavy chain 7, axonemal C9JUY3_HUMAN_00070;F8WAD4_HUMAN_00095;DYH7_HUMAN_00095 2407 VATNVDKHKSDIL wildtype peptide Matrix-remodeling-associated protein 5 2408 SIKLYEKLEEETG wildtype peptide Dimethylglycine dehydrogenase, mitochondria 2409 ANTSPFKVPGFFS wildtype peptide Ras GTPase-activating protein nGAP B1AKC7_HUMAN_00168;F8W755_HUMAN_00186 2410 YVYPDDKYKETLQ wildtype peptide Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondria B4DGE4_HUMAN_00402;D2D4A3_HUMAN_00411 2411 KLIKEIKNYIKAS wildtype peptide Mitochondrial dicarboxylate carrier 2412 RSKHMPKSTIETA wildtype peptide Translational activator of cytochrome c oxidase 1 2413 NKALLYKKNEDGL wildtype peptide Protein N-terminal asparagine amidohydrolase 2414 ISAAVEKAIKKFG wildtype peptide Hydroxysteroid dehydrogenase-like protein 2 Q5TEV0_HUMAN_00111;ARHGJ_HUMAN_00428;H0Y4D8_HUMAN_00117;ARHGJ_HUMAN_0042 2415 SKLPEVKSTSERF wildtype peptide Rho guanine nucleotide exchange factor 19 8 2416 TGEIEIKVKTAEL wildtype peptide Aspartate--tRNA ligase, mitochondrial 2417 SGTENLKDKKIFN wildtype peptide Zinc finger FYVE domain-containing protein 16 E9PMV1_HUMAN_00369;PLEC_HUMAN_00352;PLEC_HUMAN_00348;PLEC_HUMAN_00325;PLE C_HUMAN_00325;PLEC_HUMAN_00329;PLEC_HUMAN_00293;PLEC_HUMAN_00303;PLEC_HU 2418 SQFLKFKEMELPA wildtype peptide Plectin MAN_00311 2419 VEKENQKSKGQEN wildtype peptide Peptidyl-prolyl cis-trans isomerase G ODF2L_HUMAN_00409;A6NH38_HUMAN_00409;E9PNP0_HUMAN_00210;G5E956_HUMAN_0040 9;H0YD68_HUMAN_00256;H0YEY6_HUMAN_00229;ODF2L_HUMAN_00409;ODF2L_HUMAN_003 2420 EVEKKQKTLIEMY wildtype peptide Outer dense fiber protein 2-like 80;ODF2L_HUMAN_00380;ODF2L_HUMAN_00249;ODF2L_HUMAN_00380 2421 ECTACRKTFSKKS wildtype peptide Zinc finger protein 182 A6H900_HUMAN_00498;B1AM31_HUMAN_00432;D6RJE0_HUMAN_00498;E9PCJ4_HUMAN_004 2422 QEFFNEKDILSPN wildtype peptide Axonemal dynein light chain domain-containing protein 1 56;F5GWM2_HUMAN_00498;AXDN1_HUMAN_00286

2423 REQSTRKENIZZZ wildtype peptide Androglobin (Fragment) ADGB_HUMAN_01509;F8W7W4_HUMAN_00232;H0Y334_HUMAN_00467;ADGB_HUMAN_00454 C9JCC6_HUMAN_00127;E9PMW2_HUMAN_00076;E9PNC7_HUMAN_00081;E9PQX9_HUMAN_0 2424 PGSGGRKNGGMGT wildtype peptide Dr1-associated corepressor 0100;NC2A_HUMAN_00126 2425 TLEQLQKLPPVFK wildtype peptide 3-ketoacyl-CoA thiolase, mitochondrial 2426 ARYNEAKKTLTEL wildtype peptide Coiled-coil domain-containing protein 93 2427 KIRGKFKQFCSLL wildtype peptide Oral cancer-overexpressed protein 1 F5GWS9_HUMAN_00055;H3BPK6_HUMAN_00039 2428 TGKGLSKSMYVFQ wildtype peptide HCG2025867 2429 QAEELQKQYKVKL wildtype peptide Putative upstream-binding factor 1-like protein 1 2430 LTHSGKKPYVSKQ wildtype peptide Putative zinc finger protein 705G Z705A_HUMAN_00142;Z705E_HUMAN_00144;D6REW3_HUMAN_00142 2431 AFKPGEKVLLSDS wildtype peptide Anamorsin H3BV90_HUMAN_00235;CPIN1_HUMAN_00097;CPIN1_HUMAN_00288 2432 ERERAEKKKRATK wildtype peptide Probable global transcription activator SNF2L1 E9PCY3_HUMAN_01017;SMCA1_HUMAN_01026 2433 SFSHIEKEILNNH wildtype peptide Protein MB21D1 A6PW79_HUMAN_00384;M21D1_HUMAN_00384 2434 YKQDWEKSKAKKF wildtype peptide Nebulin F8WCL5_HUMAN_00567;F8WCP0_HUMAN_00567;H0YFG5_HUMAN_00293 Acetylome - Acetyltransferase Microarray page 68 of 167

Sequence PEP_FLAG Protein name Uniprot IDs A6NLS9_HUMAN_00234;A6NN32_HUMAN_00234;B0UYU3_HUMAN_00234;B0UYU4_HUMAN_00 235;C9J9T8_HUMAN_00226;C9JED0_HUMAN_00232;C9JJ27_HUMAN_00232;C9JK67_HUMAN_0 0235;E9PLW3_HUMAN_00219;E9PMB1_HUMAN_00233;F8VPK4_HUMAN_00219;F8VVU2_HUMA N_00233;F8WEJ2_HUMAN_00234;G3XAK7_HUMAN_00234;G5E9P8_HUMAN_00235;H0YI45_HU 2435 SKIQILKCGGTAR wildtype peptide Uncharacterized protein C6orf10 MAN_00232;CF010_HUMAN_00234 2436 ASKNDDKKKDAKK wildtype peptide Cylicin-1 2437 QKSGTKKLKTETD wildtype peptide Kinectin KTN1_HUMAN_00270;KTN1_HUMAN_00270 2438 LDPNIHKLQDLRD wildtype peptide TPR and ankyrin repeat-containing protein 1 2439 HSSSGPKEYLGML wildtype peptide Unconventional myosin-Vc 2440 NEKSDPKVTLKDD wildtype peptide Sodium channel subunit beta-4 2441 CDDKRHKDIWSKE wildtype peptide Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 2442 GNSVDPKSSGSKD wildtype peptide Serine/threonine-protein phosphatase 4 regulatory subunit 4 2443 QSKLIQKGNDRPN wildtype peptide Metabotropic glutamate receptor 8 2444 PSAEFMKKLQPTV wildtype peptide Mitogen-activated protein kinase 9 MK09_HUMAN_00250;MK09_HUMAN_00250;MK09_HUMAN_00250 2445 MAPESIKPLTTSK wildtype peptide PCNX protein PCX1_HUMAN_00714;PCX1_HUMAN_00714;PCX1_HUMAN_00714 2446 INVSVSKNLNLKL wildtype peptide Sodium leak channel non-selective protein 2447 VIEEEGKVGPDED wildtype peptide Ankyrin-3 2448 DEDPDIKKIKKVQ wildtype peptide Ras-specific guanine nucleotide-releasing factor 2 2449 GIKTNAKKDGSDW wildtype peptide Long-chain specific acyl-CoA dehydrogenase, mitochondria 2450 GSGDVHKMVVSIG wildtype peptide Riboflavin kinase Q5SZX6_HUMAN_00055;Q5SZX9_HUMAN_00031;E9PAQ6_HUMAN_00031;E9PRC8_HUMAN_00 2451 GNINAAKTIADII wildtype peptide T-complex protein 1 subunit gamma 031;E9PM09_HUMAN_00031 2452 HTEEQSKVPPEQK wildtype peptide RNA-binding protein 28 2453 EMNYIQKTLFKIG wildtype peptide Long-chain-fatty-acid--CoA ligase 4 E7EVA7_HUMAN_01525;E9PGY5_HUMAN_01548;F8VU38_HUMAN_01378;F8VV34_HUMAN_015 25;F8VZP8_HUMAN_01378;F8W1C2_HUMAN_01378;MDC1_HUMAN_01548;MDC1_HUMAN_015 2454 KASQSRKRSLATM wildtype peptide Mediator of DNA damage checkpoint protein 1 25;MDC1_HUMAN_00789 E9PFI7_HUMAN_00359;F5H3X8_HUMAN_00133;G5E9Z7_HUMAN_00133;G8JLJ9_HUMAN_0013 2455 EECLTLKSHRLLT wildtype peptide Poly [ADP-ribose] polymerase 8 3;PARP8_HUMAN_00380 2456 KEPCMAKFGPLPS wildtype peptide Tumor necrosis factor ligand superfamily member 18 2457 AQELGFKIFEVNA wildtype peptide ATPase family AAA domain-containing protein 5 2458 RKPNLEKHEEMFQ wildtype peptide cDNA FLJ59639 2459 SVKNPFKEMFTQE wildtype peptide UPF0489 protein C5orf22 2460 RVHTGEKPYKCND wildtype peptide Zinc finger protein 160 ZN33B_HUMAN_00383;ZN568_HUMAN_00612;E7ETX9_HUMAN_00383;E7EVK5_HUMAN_00349 2461 RSHTGEKPFECNE wildtype peptide Zinc finger protein 33A F6TH33_HUMAN_00389;F8WAJ5_HUMAN_00383;ZN568_HUMAN_00548 2462 KLSPEKKPTRGRL wildtype peptide Protein odd-skipped-related 1 2463 EQDPPAKCHTKKH wildtype peptide ETS homologous factor E9PSB2_HUMAN_00218;EHF_HUMAN_00173 2464 RPLKLSKSKILLS wildtype peptide HSD-43 2465 QVLAEWKACEVVV wildtype peptide Small G protein signaling modulator 2 SGSM2_HUMAN_00656;SGSM2_HUMAN_00611 G3V2D9_HUMAN_00008;G3V3C7_HUMAN_00008;G3V3M6_HUMAN_00008;G3V5D9_HUMAN_00 2466 ZZPKRGKKGAVAE wildtype peptide DNA-(apurinic or apyrimidinic site) lyase 008;G3V5Q1_HUMAN_00008 2467 MTLGARKLKKLGN wildtype peptide Androgen receptor F5GZG9_HUMAN_00631;F5H341_HUMAN_00441;ANDR_HUMAN_00099 B7Z8H8_HUMAN_00150;E5RHT6_HUMAN_00218;E7EV62_HUMAN_00220;F8VWH9_HUMAN_00 2468 EKVKEGKIFDDVS wildtype peptide ADP-ribosylation factor GTPase-activating protein 1 199;F8W1U7_HUMAN_00189;ARFG1_HUMAN_00273;ARFG1_HUMAN_00263 B7Z6T0_HUMAN_00314;E9PIR1_HUMAN_00514;E9PNT2_HUMAN_00314;F8WBX1_HUMAN_005 2469 GVLTFFKDSKTSA wildtype peptide Rho GTPase-activating protein 27 09;RHG27_HUMAN_00195;RHG27_HUMAN_00509 2470 NLLTSGKKKKEMQ wildtype peptide DNA-directed RNA polymerase I subunit RPA34 2471 EHQAALKIQSAFR wildtype peptide Abnormal spindle-like microcephaly-associated protein 2472 TNNRTKKAVKTVK wildtype peptide Coiled-coil domain containing 7 (Fragment) Acetylome - Acetyltransferase Microarray page 69 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2473 GGFGAKKRKGSSS wildtype peptide Coiled-coil domain-containing protein 86 2474 KKGKGSKGCKRTE wildtype peptide C-C motif chemokine 21 2475 AEKEAQKKPAESQ wildtype peptide Cyclin-A2 B7Z1C9_HUMAN_00044;B8ZZC9_HUMAN_00130;F5GZK5_HUMAN_00072;TCPH_HUMAN_00128 2476 KLISQQKAFFAKM wildtype peptide T-complex protein 1 subunit eta ;TCPH_HUMAN_00085 2477 DNQLTIKSPSKRE wildtype peptide Cell division control protein 6 homolog E7EX29_HUMAN_00007;E5RGE1_HUMAN_00007;E5RIR4_HUMAN_00007;E7ESK7_HUMAN_000 2478 ZZZZMDKNELVQK wildtype peptide 14-3-3 protein zeta/delta 07;E7EVZ2_HUMAN_00007;E9PD24_HUMAN_00007 1433Z_HUMAN_00120;1433F_HUMAN_00125;B0AZS6_HUMAN_00043;B4DHC4_HUMAN_00103 E7EX29_HUMAN_00120;A2IDB2_HUMAN_00112;E7ESK7_HUMAN_00120;E7EX24_HUMAN_0004 2479 SKVFYLKMKGDYY wildtype peptide 14-3-3 protein gamma 5 B7Z6B8_HUMAN_00101;E5RFV2_HUMAN_00101;E5RJD2_HUMAN_00060;E5RJG7_HUMAN_000 2480 SSQTGNKVHAIQC wildtype peptide 2,4-dienoyl-CoA reductase, mitochondrial 88 2481 GSELIQKYLGDGP wildtype peptide 26S protease regulatory subunit 4 2482 KYIINVKQFAKFV wildtype peptide 26S protease regulatory subunit 7 2483 EEKFIVKATNGPR wildtype peptide 26S protease regulatory subunit 10B H0YJC0_HUMAN_00072;H0YJT1_HUMAN_00082 2484 ZZMPLAKDLLHPS wildtype peptide 40S ribosomal protein S27 2485 LTYCFNKPEDKZZ wildtype peptide Ubiquitin-40S ribosomal protein S27a 2486 CFRQYAKDIGFIK wildtype peptide 40S ribosomal protein S29 D6RI02_HUMAN_00027;E9PFI5_HUMAN_00027;F5H4F9_HUMAN_00014;H0Y8L7_HUMAN_00022 2487 VVDPFSKKDWYDV wildtype peptide 40S ribosomal protein S3a ;H0Y9Y4_HUMAN_00021 2488 KIFVGTKGIPHLV wildtype peptide 40S ribosomal protein S4, X isoform 2489 ELINAAKGSSNSY wildtype peptide 40S ribosomal protein S5 2490 VQVYRKKYVIYIE wildtype peptide 60S ribosomal protein L26 RL26L_HUMAN_00077;A6NE05_HUMAN_00077;E5RIT6_HUMAN_00077 2491 YKTGKNKWFFQKL wildtype peptide 60S ribosomal protein L27 2492 VRSGYYKVLGKGK wildtype peptide 60S ribosomal protein L27a E9PJD9_HUMAN_00053;E9PLX7_HUMAN_00075 2493 GQGYLIKDGKLIK wildtype peptide 60S ribosomal protein L3 B5MCW2_HUMAN_00242;F2Z3A5_HUMAN_00245;G5E9G0_HUMAN_00242 B7Z4C8_HUMAN_00075;B7Z4E3_HUMAN_00075;C9JU56_HUMAN_00075;H7C2W9_HUMAN_000 2494 NKAVWAKGIRNVP wildtype peptide 60S ribosomal protein L31 63;RL31_HUMAN_00075;RL31_HUMAN_00075 2495 TGGAASKLSKIRV wildtype peptide 60S ribosomal protein L35 F2Z388_HUMAN_00043;H0Y3A0_HUMAN_00043 ACTA_HUMAN_00328;ACTG_HUMAN_00326;ACTH_HUMAN_00327;ACTC_HUMAN_00328;ACTS _HUMAN_00328;ACTBL_HUMAN_00327;B4DUI8_HUMAN_00283;B4DW52_HUMAN_00298;B4E33 5_HUMAN_00302;Q5T8M7_HUMAN_00293;Q5T8M8_HUMAN_00238;A6NL76_HUMAN_00240;E7E QV5_HUMAN_00205;E9PG30_HUMAN_00284;F5GYT4_HUMAN_00245;F5H0N0_HUMAN_00284; 2496 LAPSTMKIKIIAP wildtype peptide Actin, cytoplasmic 1 F5H1C1_HUMAN_00293 2497 GDMQLSKSEILRT wildtype peptide Activating signal cointegrator 1 complex subunit 3 2498 VEGFWSKDQSQWK wildtype peptide Activity-dependent neuroprotector homeobox protein ACTN1_HUMAN_00398;B7TY16_HUMAN_00398;D6PXK4_HUMAN_00198;E7EV83_HUMAN_0041 2499 LDHLAEKFRQKAS wildtype peptide Alpha-actinin-4 7;H9KV75_HUMAN_00333;ACTN1_HUMAN_00398;ACTN1_HUMAN_00398 B4DFQ6_HUMAN_00321;B4DHT5_HUMAN_00283;B4DUF5_HUMAN_00136;E9PF16_HUMAN_002 2500 RLKLHEKTPEQLR wildtype peptide Acyl-CoA synthetase family member 2, mitochondrial 53 2501 DFTGKAKWDAWNE wildtype peptide Acyl-CoA-binding protein ACBP_HUMAN_00072;ACBP_HUMAN_00056;ACBP_HUMAN_00097;ACBP_HUMAN_00116 2502 AEVPKSKALEAVK wildtype peptide Aldo-keto reductase family 1 member C2 B4DK69_HUMAN_00033;B4DKR9_HUMAN_00033;B5ME26_HUMAN_00018 2503 VKGACQKTLSDLK wildtype peptide Aldose reductase 2504 RAPLRNKYFFGEG wildtype peptide Probable alpha-ketoglutarate-dependent dioxygenase ABH5 F5H6G2_HUMAN_00121;ALKB5_HUMAN_00132 2505 PRGIIEKSCQGPR wildtype peptide Alkyldihydroxyacetonephosphate synthase, peroxisoma 2506 ELIEYDKLRKDDP wildtype peptide Alpha-actinin-4 2507 PNRDSTKYAEIYG wildtype peptide Alpha-aminoadipic semialdehyde synthase, mitochondrial B7Z582_HUMAN_00244;A6NN80_HUMAN_00370;E5RK69_HUMAN_00163;E9PGK1_HUMAN_003 2508 NPDADAKALRKAM wildtype peptide Annexin A6 38 Acetylome - Acetyltransferase Microarray page 70 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B7Z582_HUMAN_00494;A6NN80_HUMAN_00614;E5RK69_HUMAN_00407;E7EMC6_HUMAN_002 2509 GAGTDEKTLTRIM wildtype peptide Annexin A6 77;E9PGK1_HUMAN_00588;H0YC77_HUMAN_00017;E5RFF0_HUMAN_00113 2510 LKTSLGKVGVKEE wildtype peptide Antigen KI-67 F5H4V4_HUMAN_01638;KI67_HUMAN_01279

2511 KRPEILKHEMKVF wildtype peptide AP-1 complex subunit beta-1 C9J1E7_HUMAN_00318;F8WDL0_HUMAN_00318;AP1B1_HUMAN_00318;AP1B1_HUMAN_00318 2512 AVKVLMKFLELLP wildtype peptide AP-2 complex subunit beta Q7Z451_HUMAN_00208;AP2B1_HUMAN_00265 2513 ETWEKAKTMCECY wildtype peptide Probable methylthioribulose-1-phosphate dehydratase 2514 VPVPEDKYTAQVD wildtype peptide ATP synthase subunit d, mitochondrial 2515 TKLDKKKYPYWPH wildtype peptide ATP synthase subunit d, mitochondrial 2516 YSQICAKAVRDAL wildtype peptide ATP synthase subunit epsilon, mitochondrial 2517 KMVAAAKYARAER wildtype peptide ATP synthase subunit gamma, mitochondrial B4DL14_HUMAN_00008;ATPG_HUMAN_00055 2518 QFLVAFKEVGRKP wildtype peptide ATP synthase subunit gamma, mitochondrial B4DL14_HUMAN_00107;ATPG_HUMAN_00154 2519 RVAQILKEPKVAA wildtype peptide ATP synthase subunit O, mitochondrial 2520 AEAVLQKMDDMKK wildtype peptide ATPase family AAA domain-containing protein 2 2521 ATEEISKDLRATL wildtype peptide ATPase family AAA domain-containing protein 3B

2522 KDLGYGKGYKYNP wildtype peptide ATPase WRNIP1 B3KT25_HUMAN_00582;WRIP1_HUMAN_00608;WRIP1_HUMAN_00413;WRIP1_HUMAN_00249 B5ME99_HUMAN_00108;C9K0G3_HUMAN_00108;E9PKJ9_HUMAN_00071;E9PNR0_HUMAN_001 2523 PPFSSLKGKVKRD wildtype peptide B-cell CLL/lymphoma 9-like protein 08;BCL9L_HUMAN_00103;BCL9L_HUMAN_00108;BCL9L_HUMAN_00108 2524 THGQIGKEVYRCD wildtype peptide B-cell lymphoma/leukemia 11B D3YTK1_HUMAN_00657;BC11B_HUMAN_00780 2525 DRFLVGKELGREK wildtype peptide BAH and coiled-coil domain-containing protein 1 2526 AAKEKLKYWQRLR wildtype peptide Bromodomain-containing protein 1 F5H6M9_HUMAN_00216;BRD1_HUMAN_00523 2527 FTTLGFKDERRNK wildtype peptide Bromodomain-containing protein 9 H7BXS1_HUMAN_00051;BRD9_HUMAN_00277;BRD9_HUMAN_00257;BRD9_HUMAN_00320 2528 PRWDLSKFLRVST wildtype peptide CAD protein 2529 ENYRRNKSYSFIA wildtype peptide Calcium homeostasis endoplasmic reticulum protein 2530 ILDILLKNQAKLI wildtype peptide Calcium-binding protein 39 2531 GWDQSDKFVKIYI wildtype peptide Calcyclin-binding protein B3KSF1_HUMAN_00058;Q5R370_HUMAN_00042 2532 SYFKEEKYKDAIH wildtype peptide Stress-induced-phosphoprotein 1 F5H0T1_HUMAN_00291;G3XAD8_HUMAN_00362 2533 DYPQAMKHYTEAI wildtype peptide Stress-induced-phosphoprotein 1 F5H0T1_HUMAN_00357;G3XAD8_HUMAN_00428 B4DLN2_HUMAN_00017;D6RAE8_HUMAN_00007;D6RC38_HUMAN_00007;D6RER7_HUMAN_00 2534 ZZZZMAKYNTGGN wildtype peptide FYN-binding protein 007;D6RFJ5_HUMAN_00007;F5H8I8_HUMAN_00007;FYB_HUMAN_00007 C9J3L7_HUMAN_00090;C9J7N1_HUMAN_00090;C9JYJ8_HUMAN_00093;C9JZE3_HUMAN_0009 2535 SPQTLGKESRGLR wildtype peptide Replication initiator 1 2;E7EVL6_HUMAN_00033 2536 KGGKNSKYAPAEG wildtype peptide E3 ubiquitin-protein ligase UHRF1 B5ME40_HUMAN_00161;F5GXG0_HUMAN_00546 2537 RVTIMPKDIQLAR wildtype peptide Histone H3.1 H33_HUMAN_00123;H31T_HUMAN_00123;H3C_HUMAN_00122;H32_HUMAN_00123 2538 VTQFGNKYIQQTK wildtype peptide Cleavage and polyadenylation specificity factor subunit 5 2539 ALFAVPKNYKLVA wildtype peptide Cleavage and polyadenylation specificity factor subunit 5 2540 GKIIWAKHSEVQQ wildtype peptide Coatomer subunit beta 2541 VSDGVIKVFNDMK wildtype peptide Cofilin-1 E9PK25_HUMAN_00051;E9PP50_HUMAN_00013;E9PS23_HUMAN_00013 2542 NCYEEVKDRCTLA wildtype peptide Cofilin-1 E9PK25_HUMAN_00182;E9PP50_HUMAN_00144;G3V1A4_HUMAN_00127 2543 ALLKQIKFVVEKH wildtype peptide Cohesin subunit SA-1 Q68DW7_HUMAN_00395;Q6P275_HUMAN_00621;F5H1C4_HUMAN_00205 2544 TLEEIQKHNHSKS wildtype peptide Cytochrome b5 F8WEU4_HUMAN_00019;CYB5_HUMAN_00019 Q86WV2_HUMAN_00060;H3BN72_HUMAN_00060;H3BNV9_HUMAN_00060;H3BPG0_HUMAN_0 2545 HLSASQKALKEKE wildtype peptide Cytochrome c oxidase subunit 4 isoform 1, mitochondrial 0022 2546 DLIAYLKKATNEZ wildtype peptide Cytochrome c 2547 KEVRNLKWLGFRV wildtype peptide Cytoplasmic dynein 1 heavy chain 1 2548 LTIYEGKFGRLKD wildtype peptide Cytoplasmic dynein 1 heavy chain 1 2549 FAEIIEKNLKSAS wildtype peptide Cytosol aminopeptidase H0Y9Q1_HUMAN_00055;AMPL_HUMAN_00190 B4DL39_HUMAN_00383;B4DSB9_HUMAN_00421;B4E2Z2_HUMAN_00569;E9PHA6_HUMAN_006 2550 QGRIILKASRHAC wildtype peptide DNA mismatch repair protein Msh2 35 Acetylome - Acetyltransferase Microarray page 71 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2551 EGRKGNKLYYNFP wildtype peptide DNA polymerase subunit gamma-2, mitochondrial 2552 NIHGYMKDIENYI wildtype peptide DNA repair protein RAD50 RAD50_HUMAN_00965;RAD50_HUMAN_00820 2553 KFSHDLKRKMILQ wildtype peptide DNA replication licensing factor MCM2 F5H1E9_HUMAN_00946;F5H3V0_HUMAN_00800;H0Y8E6_HUMAN_00828 2554 KRVELLKELSRKP wildtype peptide DNA replication licensing factor MCM4 E5RG31_HUMAN_00168;E7EM48_HUMAN_00410 2555 FIVEQYKHLRQRD wildtype peptide DNA replication licensing factor MCM6 Q6ZN99_HUMAN_00020;F8W8Z4_HUMAN_00020;H3BP71_HUMAN_00020;H3BQ99_HUMAN_00 2556 GSGPPEKKLSREE wildtype peptide E3 ubiquitin-protein ligase BRE1B 020;H3BUL6_HUMAN_00020;BRE1B_HUMAN_00020;BRE1B_HUMAN_00020 E7EVU8_HUMAN_02248;E9PD66_HUMAN_02248;H0Y5W0_HUMAN_01282;HUWE1_HUMAN_02 2557 TVNAALKPLETLS wildtype peptide E3 ubiquitin-protein ligase HUWE1 248;HUWE1_HUMAN_02239 2558 QHSKKGKTAQGLS wildtype peptide E3 ubiquitin-protein ligase TRIM33 E7EN20_HUMAN_00585;H0Y612_HUMAN_00714;TRI33_HUMAN_00953 2559 LRGISTKPVYIPE wildtype peptide E3 ubiquitin/ISG15 ligase TRIM25 2560 MPSVFGKENKKRE wildtype peptide EH domain-containing protein 4 Electron transfer flavoprotein-ubiquinone oxidoreductase, 2561 NDVGIQKDGAPKA wildtype peptide mitochondrial C9JT69_HUMAN_00190;D6RAD5_HUMAN_00058 2562 AWVFDDKYKRPGY wildtype peptide Eukaryotic translation initiation factor 2 subunit 1 G3V4T5_HUMAN_00141;H0YJS4_HUMAN_00098 2563 RKSHLAKEGLYQY wildtype peptide Eukaryotic translation initiation factor 3 subunit A 2564 KWSHDGKFFARMT wildtype peptide Eukaryotic translation initiation factor 3 subunit B B4DV79_HUMAN_00360;F8W8C8_HUMAN_00436;EIF3B_HUMAN_00436 B0QY90_HUMAN_00339;B3KNG0_HUMAN_00170;B0QY89_HUMAN_00480;G8JLH4_HUMAN_003 2565 VHPNYHKEPFLQQ wildtype peptide Eukaryotic translation initiation factor 3 subunit L 89 2566 FTPLTVKYAYYDT wildtype peptide Eukaryotic translation initiation factor 3 subunit F B3KSH1_HUMAN_00253;B4DMT5_HUMAN_00188 D3DNT2_HUMAN_01096;E7EUU4_HUMAN_01056;E7EX73_HUMAN_00932;E9PFM1_HUMAN_01 102;E9PGM1_HUMAN_01009;G5E9S1_HUMAN_00900;H7C044_HUMAN_00149;IF4G1_HUMAN_0 2567 GRLSWGKGSSGGS wildtype peptide Eukaryotic translation initiation factor 4 gamma 1 1055;IF4G1_HUMAN_01008;IF4G1_HUMAN_00931;IF4G1_HUMAN_00899 2568 QALNDAKRELRFL wildtype peptide FAS-associated factor 2 2569 ILSVYQKKKKKKK wildtype peptide FASTKD1 protein 2570 RSDEAVKPFGLKV wildtype peptide Fatty acid synthase 2571 RFLEIGKFDLSQN wildtype peptide Fatty acid synthase 2572 GKNLTIKTESTLK wildtype peptide Fatty acid-binding protein, epidermal 2573 SRGILGKFVPPIP wildtype peptide Fidgetin-like protein 1 2574 LLQLPGKQVRTKL wildtype peptide Geranylgeranyl pyrophosphate synthase C9J6G3_HUMAN_00025;C9J7M1_HUMAN_00025 2575 ASSGPGKPSGLQY wildtype peptide Glioma tumor suppressor candidate region gene 1 protein E7EM57_HUMAN_00089;E7EUI8_HUMAN_00089;E9PD92_HUMAN_00089;E9PDV8_HUMAN_000 2576 QSEPFFKATPEEK wildtype peptide Glucose-6-phosphate 1-dehydrogenase 89;G6PD_HUMAN_00089;G6PD_HUMAN_00119 2577 NRYKNVKLPDAYE wildtype peptide Glucose-6-phosphate 1-dehydrogenase E9PDV8_HUMAN_00432;G6PD_HUMAN_00478;G6PD_HUMAN_00462 2578 VRSGDWKGYTGKT wildtype peptide Glucose-6-phosphate isomerase B3KV55_HUMAN_00360;B4DGN5_HUMAN_00394;F5GYQ4_HUMAN_00459;F8WA20_HUMAN_00 2579 IMRTAMKYNLGLD wildtype peptide Glutamate dehydrogenase 1, mitochondrial 484;H0YFJ0_HUMAN_00226

2580 LLTWDVKDTLLRL wildtype peptide Haloacid dehalogenase-like hydrolase domain-containing protein 3

2581 LVKLADKLYNLRD wildtype peptide Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase MESH1 H0YKT9_HUMAN_00116;H0YNP9_HUMAN_00123;MESH1_HUMAN_00123 HS71L_HUMAN_00248;B4DXY3_HUMAN_00248;Q53FA3_HUMAN_00248;C9IYI3_HUMAN_00145 E7EP11_HUMAN_00139;E7EP94_HUMAN_00155;E7EQL7_HUMAN_00168;F5GZ62_HUMAN_002 29;F5H1D3_HUMAN_00228;F8VZJ4_HUMAN_00223;F8W1P1_HUMAN_00248;F8WEE3_HUMAN_ 2582 HFVEEFKRKHKKD wildtype peptide Heat shock 70 kDa protein 1A/1B 00193;H0YG33_HUMAN_00313;H0YIE7_HUMAN_00138;Q5SP16_HUMAN_00081 2583 LSQECEKLKKLMS wildtype peptide Heat shock 70 kDa protein 4 A8K7Q2_HUMAN_00010;E7ET08_HUMAN_00246;E9PKE3_HUMAN_00227;E9PN89_HUMAN_001 2584 HFIAEFKRKHKKD wildtype peptide Heat shock cognate 71 kDa protein 86;HSP7C_HUMAN_00246 Acetylome - Acetyltransferase Microarray page 72 of 167

Sequence PEP_FLAG Protein name Uniprot IDs HSP7C_HUMAN_00524;A8K7Q2_HUMAN_00288;E7EP94_HUMAN_00433;E7EQL7_HUMAN_0044 6;E9PKE3_HUMAN_00505;E9PM13_HUMAN_00076;E9PNE6_HUMAN_00378;E9PS65_HUMAN_0 0115;F5GZ62_HUMAN_00507;F5H1D3_HUMAN_00506;F8VZJ4_HUMAN_00501;H0YG33_HUMAN 2585 MVQEAEKYKAEDE wildtype peptide Heat shock 70 kDa protein 1A/1B _00591;Q5SP16_HUMAN_00359 HNRPQ_HUMAN_00328;HNRPQ_HUMAN_00363;HNRPQ_HUMAN_00328;HNRPQ_HUMAN_0021 2586 AFSQFGKLERVKK wildtype peptide Heterogeneous nuclear ribonucleoprotein Q 1 Q2L7G6_HUMAN_00359;E7ERE4_HUMAN_00401;E7ETM7_HUMAN_00237;HNRPR_HUMAN_004 2587 MDEMNGKEIEGEE wildtype peptide Heterogeneous nuclear ribonucleoprotein R 00 2588 NFGQKEKPYFPIP wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00389;HNRPU_HUMAN_00445 2589 APQCLGKFIEIAA wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00490;HNRPU_HUMAN_00546 2590 GQFWGQKPWSQHY wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00739;HNRPU_HUMAN_00795 2591 DGKTEQKGGDKKR wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00163;Q5RI18_HUMAN_00015;HNRPU_HUMAN_00219 HDAC2_HUMAN_00090;B3KRS5_HUMAN_00060;Q6IT96_HUMAN_00089;E5RFP9_HUMAN_0009 7;E5RG37_HUMAN_00060;E5RGV4_HUMAN_00060;E5RH52_HUMAN_00060;E5RHE7_HUMAN_ 2592 NMSEYSKQMQRFN wildtype peptide Histone deacetylase 1 00060;H3BM24_HUMAN_00080 2593 RIKLGIKSLVSKG wildtype peptide Histone H1.1 2594 GASGSFKLNKKAA wildtype peptide Histone H1.4 H15_HUMAN_00109;H13_HUMAN_00107;H12_HUMAN_00106 2595 PAAAGVKKVAKSP wildtype peptide Histone H1.5 2596 AKPKAAKPKAAKP wildtype peptide Histone H1.5 2597 AGAKKDKGGKAKK wildtype peptide Histone H1x 2598 LGKGGAKRHRKVL wildtype peptide Histone H4 RBBP7_HUMAN_00021;C9JAJ9_HUMAN_00018;E9PC52_HUMAN_00021;E9PIC4_HUMAN_00022 ;E9PNS2_HUMAN_00022;E9PNS6_HUMAN_00022;RBBP4_HUMAN_00021;RBBP4_HUMAN_0002 2599 VINEEYKIWKKNT wildtype peptide Histone-binding protein RBBP4 2;RBBP7_HUMAN_00065 E9PQG7_HUMAN_01130;E9PR05_HUMAN_01163;H7C5W4_HUMAN_00208;MLL1_HUMAN_0113 2600 PLAPPIKPIKPVT wildtype peptide Histone-lysine N-methyltransferase MLL 0 2601 PFAPLHKPPRPQP wildtype peptide Histone-lysine N-methyltransferase MLL2 2602 EDAAARKPLTPKP wildtype peptide Histone-lysine N-methyltransferase MLL2 2603 PKIGMGKPAITKR wildtype peptide Histone-lysine N-methyltransferase MLL3 H7C212_HUMAN_00023;MLL3_HUMAN_00827 2604 SLHSYEKRLFZZZ wildtype peptide Inosine-5-monophosphate dehydrogenase 2 2605 MAHGDLKSYLRSL wildtype peptide Insulin receptor 2606 MTRGDLKSYLRSL wildtype peptide Insulin-like growth factor 1 receptor

2607 KQASSQKPAWKDG wildtype peptide Integrin-linked kinase-associated serine/threonine phosphatase 2C B4DFG4_HUMAN_00100;C9JFV5_HUMAN_00100;G5E9M5_HUMAN_00100;ILF3_HUMAN_00100; 2608 RVGLVAKGLLLKG wildtype peptide Interleukin enhancer-binding factor 3 LF3_HUMAN_00100;ILF3_HUMAN_00100;ILF3_HUMAN_00100;ILF3_HUMAN_00100 A7Y322_HUMAN_00495;A8CTX8_HUMAN_00495;A8CTY3_HUMAN_00495;A8DCP3_HUMAN_004 95;B4DTM2_HUMAN_00495;E7ERJ0_HUMAN_00458;E7ERJ1_HUMAN_00495;E9PD98_HUMAN_ 00495;F5H153_HUMAN_00495;F8W7L8_HUMAN_00495;F8W7U0_HUMAN_00495;ITSN1_HUMAN 2609 KHQLEGKLQDIRC wildtype peptide Intersectin-1 _00495;ITSN1_HUMAN_00495;ITSN1_HUMAN_00495 C9JVN9_HUMAN_00104;G3V272_HUMAN_00104;G3V5A8_HUMAN_00104;G3V5S1_HUMAN_001 2610 HSGIYYKPESLKA wildtype peptide L-2-hydroxyglutarate dehydrogenase, mitochondrial 04;L2HDH_HUMAN_00104 F5GXH2_HUMAN_00081;F5GXY2_HUMAN_00081;F5GYU2_HUMAN_00081;LDHA_HUMAN_0008 2611 PKIVSGKDYNVTA wildtype peptide L-lactate dehydrogenase A chain 1;LDHA_HUMAN_00110;LDHA_HUMAN_00081

2612 PVSTMIKGLYGIK wildtype peptide L-lactate dehydrogenase A chain E9PH51_HUMAN_00251;F5H308_HUMAN_00250;LDHA_HUMAN_00307;LDHA_HUMAN_00220 2613 MATLKEKLIAPVA wildtype peptide L-lactate dehydrogenase B chain A8MW50_HUMAN_00007;C9J7H8_HUMAN_00007;F5H793_HUMAN_00007 2614 TLWDIQKDLKDLZ wildtype peptide L-lactate dehydrogenase B chain 2615 SPSAMGKRLSREQ wildtype peptide La-related protein 4B 2616 SPWAVKKINPICN wildtype peptide Lymphokine-activated killer T-cell-originated protein kinase Acetylome - Acetyltransferase Microarray page 73 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2617 KRASGGKLIFYDL wildtype peptide Lysine--tRNA ligase H3BVA8_HUMAN_00169;SYK_HUMAN_00169 2618 LKKKKAKAGKLKD wildtype peptide M-phase phosphoprotein 8 F5H8H9_HUMAN_00174;MPP8_HUMAN_00174 2619 PVFTVTKFDKQGN wildtype peptide Magnesium transporter MRS2 homolog, mitochondrial MRS2_HUMAN_00090;H7BZ29_HUMAN_00042;MRS2_HUMAN_00090;MRS2_HUMAN_00090

2620 IKNKTWKFVEGLP wildtype peptide Malate dehydrogenase, cytoplasmic F5H098_HUMAN_00316;B8ZZ51_HUMAN_00133;B9A041_HUMAN_00174;MDHC_HUMAN_00209 2621 TFVAELKGLDPAR wildtype peptide Malate dehydrogenase, mitochondrial 2622 VTPFILKKLDSIZ wildtype peptide Mitochondrial import receptor subunit TOM5 homolog B7WPJ1_HUMAN_00210;B9A067_HUMAN_00175;C9J406_HUMAN_00123;F5GZ32_HUMAN_0021 2623 KIESLAKSLEDAL wildtype peptide Mitochondrial inner membrane protein 1;IMMT_HUMAN_00211 H7BXZ6_HUMAN_00092;MIRO1_HUMAN_00092;MIRO1_HUMAN_00092;MIRO1_HUMAN_00092 2624 NKHSIDKVTSRWI wildtype peptide Mitochondrial Rho GTPase 1 MIRO1_HUMAN_00092;MIRO1_HUMAN_00092 2625 LVIDASKRISVDE wildtype peptide Mitogen-activated protein kinase 8 Q308M2_HUMAN_00232;MK08_HUMAN_00308;MK08_HUMAN_00308;MK08_HUMAN_00308 2626 ILPAPFKPLNDKN wildtype peptide MKL/myocardin-like protein 2 2627 LQGVFSKQTVLKS wildtype peptide KAT8 regulatory NSL complex subunit 1 MYH11_HUMAN_00828;B1PS43_HUMAN_00835;Q3MIV8_HUMAN_00828;MYH9_HUMAN_00685 2628 NCAAYLKLRNWQW wildtype peptide Myosin-9 MYH11_HUMAN_00835;MYH11_HUMAN_00835 2629 VKRKLQKDLEGLS wildtype peptide Myosin-9 2630 NRDEAIKQLRKLQ wildtype peptide Myosin-9 H0Y3P4_HUMAN_00240;MYH9_HUMAN_01060 2631 ZZZMCDKEFMWAL wildtype peptide Myotrophin B4DQK9_HUMAN_00112;F5GXM7_HUMAN_00194;MTMRE_HUMAN_00194;MTMRE_HUMAN_001 2632 DTHLFDKVRGYDI wildtype peptide Myotubularin-related protein 14 94 2633 YNDKFYKDVLEVG wildtype peptide N-alpha-acetyltransferase 50 C9J5D1_HUMAN_00037;C9JZU6_HUMAN_00036;E7EQ69_HUMAN_00036 A6NEL0_HUMAN_00030;F2Z2W6_HUMAN_00014;F2Z2Y5_HUMAN_00014;H7BXJ5_HUMAN_000 2634 SAEGAAKEEPKRR wildtype peptide Non-histone chromosomal protein HMG-14 14 2635 AKPAPPKPEPKPK wildtype peptide Non-histone chromosomal protein HMG-17 2636 IVEFSGKPAARKA wildtype peptide Non-POU domain-containing octamer-binding protein C9IZL7_HUMAN_00198;F5GYZ3_HUMAN_00109;H7C367_HUMAN_00060 C9IZL7_HUMAN_00107;C9JYS8_HUMAN_00107;F5GYZ3_HUMAN_00018;H7C367_HUMAN_0002 2637 GEVFIHKDKGFGF wildtype peptide Non-POU domain-containing octamer-binding protein 6 B4DHP6_HUMAN_00092;E9PLD1_HUMAN_00173;H0YCB0_HUMAN_00148;A6NM69_HUMAN_00 2638 GKEHMEKYGTKIE wildtype peptide Non-specific lipid-transfer protein 129;C9JC79_HUMAN_00149;NLTP_HUMAN_00129 B4DHP6_HUMAN_00357;A6NM69_HUMAN_00394;C9JC79_HUMAN_00414;E1B6W5_HUMAN_00 031;F2Z3J1_HUMAN_00034;H0YD06_HUMAN_00053;H0YF61_HUMAN_00053;NLTP_HUMAN_00 2639 KANLVFKEIEKKL wildtype peptide Non-specific lipid-transfer protein 034 2640 VFGNEIKLEKPKG wildtype peptide Nucleolin 2641 ARSQPSKTLFVKG wildtype peptide Nucleolin Q9BQ02_HUMAN_00344;E7EX81_HUMAN_00464;H7BY16_HUMAN_00197 2642 DKDYHFKVDNDEN wildtype peptide Nucleophosmin NPM_HUMAN_00032;NPM_HUMAN_00032 2643 MQASIEKGGSLPK wildtype peptide Nucleophosmin 2644 MQASIEKAHZZZZ wildtype peptide Isoform 3 of Nucleophosmin 2645 SNEHLQKHVEDLL wildtype peptide Nucleoprotein TPR 2646 MPDGQFKDISLSD wildtype peptide Peroxiredoxin-1 2647 EYFSKQKZZZZZZ wildtype peptide Peroxiredoxin-1 2648 PKGVFTKELPSGK wildtype peptide Peroxiredoxin-6 C9JB63_HUMAN_00109;F1LLU7_HUMAN_00062;F8W6J1_HUMAN_00062;F8WAW4_HUMAN_00 2649 DPGNEVKLKLYAL wildtype peptide Enoyl-CoA delta isomerase 2, mitochondrial 032;ECI2_HUMAN_00027 2650 TARFLMKSYDQVH wildtype peptide Peroxisomal acyl-coenzyme A oxidase 1 F5GYQ8_HUMAN_00399;F5H0M0_HUMAN_00369;ACOX1_HUMAN_00437 2651 EVHESYKHLKSLQ wildtype peptide Peroxisomal acyl-coenzyme A oxidase 1 F5GYQ8_HUMAN_00613;F5H0M0_HUMAN_00583;ACOX1_HUMAN_00651 2652 LMMAKEKPPITVV wildtype peptide Phosphoribosyl pyrophosphate synthase-associated protein 1 B4DP31_HUMAN_00164;C9J168_HUMAN_00164;KPRA_HUMAN_00267 2653 EKRFLDKALELNM wildtype peptide Phosphoserine aminotransferase 2654 LLRLLRKSIDAEV wildtype peptide Plakophilin-4 F8W7E2_HUMAN_00476;PKP4_HUMAN_00625 2655 SHYSGLKHEDKRG wildtype peptide Plasminogen activator inhibitor 1 RNA-binding protein Acetylome - Acetyltransferase Microarray page 74 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2656 TDIKDSKAYYHLL wildtype peptide Plastin-2 2657 NLNDDEKLNNAKY wildtype peptide Plastin-2 D6RCM4_HUMAN_00412;D6RDK4_HUMAN_00412;E9PCD8_HUMAN_00283;DDX4_HUMAN_0039 2658 LMDIIGKEKIGLK wildtype peptide Probable ATP-dependent RNA helicase DDX4 8 2659 AGPLSGKKFGNPG wildtype peptide Probable ATP-dependent RNA helicase DDX5 2660 QFSSFEKRAKIFC wildtype peptide Probable ATP-dependent RNA helicase DDX58 B3KWW1_HUMAN_00787;A2A376_HUMAN_00655;DDX58_HUMAN_00813 2661 PLKENVKYAVRLR wildtype peptide Probable E3 ubiquitin-protein ligase MYCBP2 2662 GSEKDKKGKGGAK wildtype peptide Probable global transcription activator SNF2L2 B1ALG1_HUMAN_00201;B1ALF6_HUMAN_00243;B1ALG2_HUMAN_00219;B1ALG5_HUMAN_000 2663 RDKGKGKKRPNRG wildtype peptide Probable global transcription activator SNF2L2 84;F6XG14_HUMAN_00241;SMCA2_HUMAN_01537 2664 LAIERAKPYHLST wildtype peptide Protein ELYS ELYS_HUMAN_01052;ELYS_HUMAN_01026 2665 FQQGCAKTLYHSV wildtype peptide Protein ETHE1, mitochondrial 2666 SAVCAEKEEKHGK wildtype peptide Biorientation of chromosomes in cell division protein 1-like 2667 DIPEEDKGNVKQC wildtype peptide Protein FRG1 FRG1B_HUMAN_00131;E9PLY7_HUMAN_00071 B3KPL2_HUMAN_00054;B5MBX1_HUMAN_00038;C9J929_HUMAN_00038;D3DQA3_HUMAN_000 38;D6R9B8_HUMAN_00038;G3XAA4_HUMAN_00038;JADE2_HUMAN_00038;JADE2_HUMAN_00 2668 KLPSSTKSGWPRQ wildtype peptide Protein Jade-2 038 2669 NGLVQPKEESIHT wildtype peptide Protein Jade-3 2670 RAACHLKLEDYDK wildtype peptide Protein unc-45 homolog A B8ZZA1_HUMAN_00123;B8ZZI3_HUMAN_00054;B8ZZQ6_HUMAN_00099;B8ZZW7_HUMAN_001 2671 DDDVDTKKQKTDE wildtype peptide Prothymosin alpha 28;E7EVV7_HUMAN_00127;H7C2N1_HUMAN_00140;PTMA_HUMAN_00102 2672 VHTHFLKEMKEAL wildtype peptide Proto-oncogene vav 2673 FKQFHFKDFNRAF wildtype peptide Pterin-4-alpha-carbinolamine dehydratase PSAL_HUMAN_00048;E5RJ24_HUMAN_00044;E7EWZ2_HUMAN_00048;E9PJF9_HUMAN_00044; E9PLK3_HUMAN_00044;E9PP11_HUMAN_00035;E9PP53_HUMAN_00044;E9PPD4_HUMAN_000 48;E9PPT3_HUMAN_00048;E9PPZ2_HUMAN_00044;H0YAQ6_HUMAN_00040;PSAL_HUMAN_00 2674 LAAMPEKRPFERL wildtype peptide Puromycin-sensitive aminopeptidase 048 2675 MKDMLEKKVKKVV wildtype peptide Putative heat shock protein HSP 90-alpha A5 B7Z333_HUMAN_00074;Q5W0J0_HUMAN_00093;F5H4U3_HUMAN_00116;H0Y6T8_HUMAN_002 2676 DRNEGLKFARKHS wildtype peptide Ras-related protein Rab-18 51 2677 VKDLKDKAKETAD wildtype peptide Receptor expression-enhancing protein 5 PTBP1_HUMAN_00266;B1ALY6_HUMAN_00169;PTBP3_HUMAN_00233;PTBP3_HUMAN_00236; PTBP3_HUMAN_00270;PTBP3_HUMAN_00267;PTBP3_HUMAN_00236;PTBP1_HUMAN_00266;P 2678 LTSLNVKYNNDKS wildtype peptide Polypyrimidine tract-binding protein 3 TBP1_HUMAN_00266 E5RH53_HUMAN_00147;H0YB03_HUMAN_00055;H0YB83_HUMAN_00137;H0YC67_HUMAN_000 2679 ANAYIIKEHFEKA wildtype peptide Regulator of microtubule dynamics protein 1 37 2680 HAAKFGKFSGKDD wildtype peptide Replication factor C subunit 1 C9J8M3_HUMAN_00007;C9JGY5_HUMAN_00007;C9JTT7_HUMAN_00007;C9JW34_HUMAN_000 2681 ZMQAFLKGTSIST wildtype peptide Replication factor C subunit 4 07;C9JXZ7_HUMAN_00007;C9JZI1_HUMAN_00007;F8WE44_HUMAN_00007 H3BMM9_HUMAN_00218;H3BMS0_HUMAN_00195;H3BPG5_HUMAN_00041;H3BR57_HUMAN_0 0041;H3BTC0_HUMAN_00218;H3BV80_HUMAN_00124;RNPS1_HUMAN_00195;RNPS1_HUMAN_ 2682 NPDEAEKALKHMD wildtype peptide RNA-binding protein with serine-rich domain 1 00181 2683 DLINLAKKRTNII wildtype peptide rRNA 2-O-methyltransferase fibrillarin 2684 LADQQDKYMKZZZ wildtype peptide RuvB-like 1 2685 TDQSKWKAYDATH wildtype peptide S-formylglutathione hydrolase 2686 TKAADLKNLFGKY wildtype peptide SAFB-like transcription modulator 2687 VACKEPKKKZZZZ wildtype peptide SAGA-associated factor 29 homolog 2688 LISAFQKPDQGIV wildtype peptide SH2 domain-containing protein 1A 2689 EMACNEKLGKSVV wildtype peptide Sialic acid synthase 2690 REAEFTKSIAKFF wildtype peptide Signal peptidase complex subunit 2 E9PI68_HUMAN_00222;E9PL01_HUMAN_00122;E9PRB9_HUMAN_00052 Acetylome - Acetyltransferase Microarray page 75 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2691 LVCLVYKTDQAQD wildtype peptide Signal recognition particle 9 kDa protein 2692 RIYLEGKIDYGEY wildtype peptide Single-stranded DNA-binding protein, mitochondrial C9K0U8_HUMAN_00113;E7EUY5_HUMAN_00113 2693 VLGAVNKPLSATG wildtype peptide Sister chromatid cohesion protein PDS5 homolog A 2694 LVNNGEKLEFLHK wildtype peptide Splicing factor 3B subunit 3 2695 NRVVVTKYCDPDS wildtype peptide Splicing factor U2AF 65 kDa subunit SRSF8_HUMAN_00036;Q8NAK9_HUMAN_00036;F5GYB8_HUMAN_00036;H0YG49_HUMAN_000 2696 LRRVFEKYGRVGD wildtype peptide Serine/arginine-rich splicing factor 2 63;SRSF8_HUMAN_00036 A6NNE8_HUMAN_00024;C9JAB2_HUMAN_00024;G5E9M3_HUMAN_00024;SRSF7_HUMAN_000 2697 LGTGAGKGELERA wildtype peptide Serine/arginine-rich splicing factor 7 24;SRSF7_HUMAN_00024 2698 KGFGFIKLESRAL wildtype peptide Splicing factor, proline- and glutamine-rich 2699 YWEVTVKRSQQFR wildtype peptide SPRY domain-containing protein 4 Q5T9Q5_HUMAN_00073;F5GXC8_HUMAN_00085;F5H5G8_HUMAN_00009;SUCB1_HUMAN_001 2700 GKKLFTKQTGEKG wildtype peptide Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial 21 2701 DLGGGVKEAQVYQ wildtype peptide Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial E9PDQ8_HUMAN_00338;SUCB2_HUMAN_00338 2702 TVEKTWKALQDFK wildtype peptide Sulfide:quinone oxidoreductase, mitochondrial H3BMS6_HUMAN_00128;H3BNX3_HUMAN_00180 2703 KRKLDEKENLSAK wildtype peptide SUMO-activating enzyme subunit 2 2704 NVFKIVKMIMERN wildtype peptide Superkiller viralicidic activity 2-like 2 2705 EPIFGKKPRIEES wildtype peptide Superkiller viralicidic activity 2-like 2 2706 EVQKLFKRKNNQI wildtype peptide Tetratricopeptide repeat protein 39C G3V1P2_HUMAN_00112;TT39C_HUMAN_00358 2707 PRELLEKLIESRQ wildtype peptide Thimet oligopeptidase 2708 ZZZZMVKQIESKT wildtype peptide Thioredoxin B2R5P6_HUMAN_00089;B7Z2S5_HUMAN_00139;E2QRB9_HUMAN_00133;E7ESI6_HUMAN_001 88;E7EW10_HUMAN_00204;E9PIR7_HUMAN_00089;E9PMY9_HUMAN_00051;E9PNQ6_HUMAN_ 00158;F5H780_HUMAN_00051;E9PKD3_HUMAN_00089;TRXR1_HUMAN_00133;TRXR1_HUMAN 2709 SRNYGWKVEETVK wildtype peptide Thioredoxin reductase 1, cytoplasmic _00188;TRXR1_HUMAN_00141;TRXR1_HUMAN_00089;TRXR1_HUMAN_00204 2710 LDDFKGKYLVLFF wildtype peptide Thioredoxin-dependent peroxide reductase, mitochondria 2711 TFYSAGKNYLLRM wildtype peptide THO complex subunit 1 2712 DVEYKKKQDPYLL wildtype peptide Transducin beta-like protein 2 Q96E41_HUMAN_00315;E9PF19_HUMAN_00279 Q6PI57_HUMAN_00343;E9PD64_HUMAN_00343;F8W8S3_HUMAN_00343;F8W964_HUMAN_003 36;H0YKH0_HUMAN_00343;H0YKN8_HUMAN_00349;H0YKT5_HUMAN_00348;H0YL70_HUMAN_ 00353;H0YLI3_HUMAN_00417;H0YLW9_HUMAN_00343;H0YNT2_HUMAN_00287;TLE3_HUMAN_ 2713 LRSMPGKPPGMDP wildtype peptide Transducin-like enhancer protein 3 00343;TLE3_HUMAN_00348 2714 SREVQSKIEKKYD wildtype peptide Transgelin E9PC82_HUMAN_00008;E9PJ32_HUMAN_00017

2715 VLKTPAKRHKQLK wildtype peptide Transient receptor potential cation channel subfamily M member 2 E9PGK7_HUMAN_01104;TRPM2_HUMAN_01084 B3KSI4_HUMAN_00121;B4E022_HUMAN_00157;E7EPA7_HUMAN_00212;E9PFF2_HUMAN_0020 2716 QMDIYQKRCEAFG wildtype peptide Transketolase 4 2717 SYKVGDKIATRKA wildtype peptide Transketolase B3KSI4_HUMAN_00231;B4E022_HUMAN_00267;E7EPA7_HUMAN_00322 2718 SVDYGKKSKLEFA wildtype peptide Tubulin alpha-3C/D chain 2719 YFECQAKYGAFVK wildtype peptide Tubulin-folding cofactor B 2720 QRPERVKPFMTGA wildtype peptide Translationally-controlled tumor protein Q8TBK7_HUMAN_00078;E9PJF7_HUMAN_00111 2721 IKHYHIKETNDNP wildtype peptide Tyrosine-protein kinase ITK/TSK 2722 KNKNRYKNILPFD wildtype peptide Tyrosine-protein phosphatase non-receptor type 11 PTN11_HUMAN_00280;PTN11_HUMAN_00280 2723 NKIMTEKYNGNRI wildtype peptide Tyrosine-protein phosphatase non-receptor type 2 Q59F91_HUMAN_00289;PTN2_HUMAN_00312;PTN2_HUMAN_00312 2724 TAIKDLKNPDRVL wildtype peptide UDP-glucose 6-dehydrogenase B4DN25_HUMAN_00076;UGDH_HUMAN_00106 2725 CLTDHFKPLWARN wildtype peptide Ubiquitin-fold modifier-conjugating enzyme 1 2726 IKMPLRKHNLELT wildtype peptide Uncharacterized protein C12orf40 CL040_HUMAN_00088;CL040_HUMAN_00011 2727 SLQPYAKRARQEF wildtype peptide Uncharacterized protein C1orf112 CA112_HUMAN_00657;CA112_HUMAN_00469 2728 EVLHALKEKVTSL wildtype peptide Uncharacterized protein C2orf47, mitochondrial 2729 PQATAAKYPRTIH wildtype peptide Centrosomal protein POC5 D6RDG4_HUMAN_00510;POC5_HUMAN_00362;POC5_HUMAN_00513 Acetylome - Acetyltransferase Microarray page 76 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2730 LREGCKKILVADS wildtype peptide Vacuolar protein sorting-associated protein 41 homolog E9PF36_HUMAN_00737;H7BZX6_HUMAN_00110;VPS41_HUMAN_00762 2731 NEHDLLKLKKFTE wildtype peptide Vacuolar protein sorting-associated protein 4B 2732 QEVWKWKEEKGDR wildtype peptide Valine--tRNA ligase B4DZ61_HUMAN_00125;B0V043_HUMAN_00420;H0Y4A6_HUMAN_00339 H0Y407_HUMAN_00329;H0Y462_HUMAN_00329;H0YBZ0_HUMAN_00301;VEGFA_HUMAN_0032 9;VEGFA_HUMAN_00329;VEGFA_HUMAN_00149;VEGFA_HUMAN_00149;VEGFA_HUMAN_0014 2733 SVRGKGKGQKRKR wildtype peptide Vascular endothelial growth factor A 9 2734 TLALRTKFSASQF wildtype peptide Very long-chain acyl-CoA synthetase G3V1R7_HUMAN_00056;S27A2_HUMAN_00238 F5H2A9_HUMAN_00354;G3V1M7_HUMAN_00377;F5GYP4_HUMAN_00032;ACADV_HUMAN_003 2735 EVGSGFKVAMHIL wildtype peptide Very long-chain specific acyl-CoA dehydrogenase, mitochondrial 09 2736 FFIEPQKPVFPET wildtype peptide Chromosome alignment-maintaining phosphoprotein 1 2737 AALRHAKWFQARA wildtype peptide Zinc finger RNA-binding protein 2738 AFYAPQKKFGPVV wildtype peptide Zyxin C9IZ41_HUMAN_00024;H0Y2Y8_HUMAN_00023 2739 LYIYSKKSSTSRR wildtype peptide ZZ-type zinc finger-containing protein 3 ZZZ3_HUMAN_00725;ZZZ3_HUMAN_00232 2740 ZZMVKVKAGVNRF wildtype peptide Uncharacterized protein ENSP00000381431 2741 RFRSLRKGILVVR wildtype peptide NONE 2742 YNPSMSKPDGWGV wildtype peptide Betaine--homocysteine S-methyltransferase 1 E5RJH0_HUMAN_00216;E7EXB3_HUMAN_00328 2743 KQQDSDKLNSLSV wildtype peptide Calcium signal-modulating cyclophilin ligand 2744 EEEKKTKKKDAIV wildtype peptide Cyclic nucleotide-gated cation channel alpha-3 2745 RYLSAQKPLLNDG wildtype peptide Carnitine O-palmitoyltransferase 2, mitochondrial 2746 YWTEPEKFLPERF wildtype peptide Cytochrome P450 3A4 E7EVM8_HUMAN_00263;E9PB76_HUMAN_00329 2747 DSPKTPKSPSEKT wildtype peptide Transcription factor E2F3 F5GXL7_HUMAN_00172;MRP1_HUMAN_00498;MRP1_HUMAN_00498;MRP1_HUMAN_00498;MR P1_HUMAN_00498;MRP1_HUMAN_00498;MRP1_HUMAN_00498;MRP1_HUMAN_00498;MRP1_H 2748 VAHMKSKDNRIKL wildtype peptide Multidrug resistance-associated protein 1 UMAN_00498 B4DLC8_HUMAN_00380;G3V268_HUMAN_00384;G3V2M6_HUMAN_00380;G3V4F3_HUMAN_001 2749 ILTSNQKTLTPEK wildtype peptide Signal transducer and activator of transcription 2 86 2750 AEEEDEKCASELE wildtype peptide Kinetochore protein NDC80 homolog 2751 SQKQYKKDLENEI wildtype peptide Nebulette 2752 AVQLAEKLLPAFN wildtype peptide Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB A6NLR2_HUMAN_00061;H0Y7H1_HUMAN_00030 2753 MRNNFGKVLERGV wildtype peptide Vesicle-associated membrane protein 5 2754 DKPSGRKLLFNAL wildtype peptide UDP-glucose:glycoprotein glucosyltransferase 2 2755 QTNLDEKQLAKLH wildtype peptide SH3 and multiple ankyrin repeat domains protein 1 H9KV90_HUMAN_00169;SHAN1_HUMAN_00169 2756 LEEILPKLQAENI wildtype peptide Bile acyl-CoA synthetase 2757 GNVKVLKSERDKI wildtype peptide Testis-specific gene 10 protein B7Z925_HUMAN_00058;B8ZZZ9_HUMAN_00058;F8WA32_HUMAN_00058 D6RCM4_HUMAN_00510;D6RDK4_HUMAN_00510;E9PCD8_HUMAN_00381;DDX4_HUMAN_0049 2758 QFSKREKLVEILR wildtype peptide Probable ATP-dependent RNA helicase DDX4 6 2759 AVVHLKKAHRRVH wildtype peptide Testis-expressed sequence 15 protein 2760 LCRQMTKTISEVI wildtype peptide Tctex1 domain-containing protein 1 E9PJG2_HUMAN_00148;E9PQ59_HUMAN_00148;NFRKB_HUMAN_00161;NFRKB_HUMAN_0014 2761 YFHRLLKQILASR wildtype peptide Nuclear factor related to kappa-B-binding protein 8 2762 SQKLMAKMGFREG wildtype peptide Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 2763 KMYHQLKKCETRK wildtype peptide Protein SMG5 2764 VVMHLKKQDLKET wildtype peptide Protein IWS1 homolog E7EX51_HUMAN_00553;IWS1_HUMAN_00275;IWS1_HUMAN_00393 2765 LLKVAWKRRLIFT wildtype peptide Protein deltex-2 E7ET89_HUMAN_00466;F5GX89_HUMAN_00466;DTX2_HUMAN_00510 2766 MESGTKKDNSILE wildtype peptide Leucine-rich repeat transmembrane protein FLRT1 2767 TMDTESKKDPEGC wildtype peptide Nuclear factor NF-kappa-B p105 subunit NFKB1_HUMAN_00441;NFKB1_HUMAN_00260 2768 PLQVKCKDCEERR wildtype peptide Spindle assembly abnormal protein 6 homolog A8MV73_HUMAN_00332;F5GX74_HUMAN_00340;G3V1U0_HUMAN_00332;MCAF1_HUMAN_003 2769 LEQIQSKDSLDEK wildtype peptide Activating transcription factor 7-interacting protein 1 32 2770 EKQQEEKQQTTLT wildtype peptide Probable ATP-dependent RNA helicase YTHDC2 D6RA70_HUMAN_00406;E9PE26_HUMAN_00316 Acetylome - Acetyltransferase Microarray page 77 of 167

Sequence PEP_FLAG Protein name Uniprot IDs IFIX_HUMAN_00040;IFIX_HUMAN_00040;IFIX_HUMAN_00040;IFIX_HUMAN_00040;IFIX_HUMAN 2771 KLNPKMKEEYDKI wildtype peptide Pyrin and HIN domain-containing protein 1 00040 F5GZU8_HUMAN_00298;F5H185_HUMAN_00630;F5H327_HUMAN_00406;G8JLA4_HUMAN_0035 8;G8JLD3_HUMAN_00658;G8JLM9_HUMAN_00630;RB6I2_HUMAN_00630;RB6I2_HUMAN_00630; 2772 KDLKDLKEKVSLL wildtype peptide ELKS/Rab6-interacting/CAST family member 1 RB6I2_HUMAN_00630;RB6I2_HUMAN_00358 2773 TENQTIKRGQRLP wildtype peptide Ankyrin-2 2774 VILLFSKGTGZZZ wildtype peptide Olfactory receptor 52H1 B4DSN4_HUMAN_00201;E7EML5_HUMAN_00758;E7ET57_HUMAN_00761;KDM2B_HUMAN_007 2775 KMNRDNKEGQEPA wildtype peptide Lysine-specific demethylase 2B 61;KDM2B_HUMAN_00758;KDM2B_HUMAN_00727 2776 FLLGVSKEVKNRA wildtype peptide UPF0258 protein KIAA1024 ATPase, aminophospholipid transporter-like, Class I, type 8A, 2777 WHTIMWKEENSPP wildtype peptide member 2 2778 VKTKVFKDFSELE wildtype peptide Glycogen phosphorylase, liver form E9PK47_HUMAN_00470;F5H816_HUMAN_00436 2779 AELNNEKKEKRKE wildtype peptide AP-2 complex subunit beta 2780 LVIAGKKARAVSP wildtype peptide AT-rich interactive domain-containing protein 5B 2781 QEKEKSKKKKGGK wildtype peptide Coiled-coil domain-containing protein 80 E7ENF7_HUMAN_00212;CCD80_HUMAN_00595 2782 AGKRKLKELEDEI wildtype peptide Dynein heavy chain 2, axonemal B1APP8_HUMAN_00118;Q5VSR7_HUMAN_00692;H0Y3P8_HUMAN_00689;H0Y757_HUMAN_000 2783 MEWITAKLKEARG wildtype peptide 6-phosphofructokinase type C 53 A6NMY3_HUMAN_00896;B8ZZJ3_HUMAN_00854;C9JPJ2_HUMAN_00896;D6W5H5_HUMAN_008 2784 PGPGDQKTGIPSA wildtype peptide Alstrom syndrome protein 1 96;ALMS1_HUMAN_00896;ALMS1_HUMAN_00896 Q5JYW6_HUMAN_00103;B7WPP2_HUMAN_00121;H0Y5P0_HUMAN_00187;H0YE38_HUMAN_00 2785 KATESLKAESLAL wildtype peptide Forkhead-associated domain-containing protein 1 139;FHAD1_HUMAN_00868;FHAD1_HUMAN_00832 C9JB80_HUMAN_00477;E7ET15_HUMAN_00909;H7C4V2_HUMAN_00230;SR140_HUMAN_00909 2786 KLESRSKDKKEKD wildtype peptide U2 snRNP-associated SURP motif-containing protein ;SR140_HUMAN_00501 2787 FAASLVKGQGRIC wildtype peptide Ubiquitin-conjugating enzyme E2Q-like protein 1 2788 IQPNLAKVCALLR wildtype peptide Protein FAM69B 2789 IVLFDPKGGARID wildtype peptide G-protein coupled receptor 98 E7ETI5_HUMAN_05603;GPR98_HUMAN_01264 D3DQ79_HUMAN_00139;E7ETM8_HUMAN_00139;E7EUA0_HUMAN_00189;H7BXY5_HUMAN_00 2790 EEKERIKYEEDKR wildtype peptide Nexilin 103;NEXN_HUMAN_00189;NEXN_HUMAN_00203;NEXN_HUMAN_00139 FANK1_HUMAN_00033;A6NH44_HUMAN_00027;A6NKD7_HUMAN_00027;A6NP17_HUMAN_000 27;C9JD80_HUMAN_00027;H7BY65_HUMAN_00033;FANK1_HUMAN_00033;FANK1_HUMAN_000 2791 LYWDLEKKAKRQG wildtype peptide Fibronectin type 3 and ankyrin repeat domains protein 1 33 B5MCW5_HUMAN_00207;E7EPT8_HUMAN_00343;E7EW79_HUMAN_00207;E9PH21_HUMAN_0 2792 VSSKSMKELKELC wildtype peptide Ral-GDS-related protein 0343;E9PH87_HUMAN_00343 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 2793 VLERSDKKAYEEA wildtype peptide DHX16 A2AB15_HUMAN_00142;B0V0F8_HUMAN_00202 2794 EATQLGKDSMEEL wildtype peptide Fibroblast growth factor-binding protein 2 2795 LEKYRPKQRLRFK wildtype peptide Protein tyrosine phosphatase type IVA 3 E5RFQ4_HUMAN_00069;TP4A3_HUMAN_00130;TP4A3_HUMAN_00069 2796 IAASFLKCTQTQP wildtype peptide Isoform 5 of Rho GTPase-activating protein 17 2797 KKQRTGKKIHVCQ wildtype peptide Zinc finger protein 131 H0Y974_HUMAN_00008;ZN131_HUMAN_00291 2798 IFPYAFKEVIEKK wildtype peptide DNA polymerase alpha catalytic subunit 2799 LYRQFKKDIDEHQ wildtype peptide Centrosomal protein of 68 kDa 2800 DQDEGTKYRQMRD wildtype peptide Conserved oligomeric Golgi complex subunit 3 2801 ENSKAEKPKPARR wildtype peptide Pannexin-2 PANX2_HUMAN_00459;PANX2_HUMAN_00325 2802 DRVDTFKAFSKKM wildtype peptide Sorting nexin-33 G3V1Q7_HUMAN_00985;H7BY07_HUMAN_00855;PMFBP_HUMAN_00980;PMFBP_HUMAN_0077 2803 CGTLGWKGLPQDM wildtype peptide Polyamine-modulated factor 1-binding protein 1 0 2804 QESCEKKDFLSAP wildtype peptide Protocadherin gamma-A2 Acetylome - Acetyltransferase Microarray page 78 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B7Z223_HUMAN_00144;B7Z257_HUMAN_00202;Q5T3H5_HUMAN_00059;RGS7_HUMAN_00228 2805 NPHKTRKSVYGLQ wildtype peptide Regulator of G-protein signaling 7 RGS7_HUMAN_00228;RGS7_HUMAN_00175;RGS7_HUMAN_00228 2806 EDTEGDKVRATRT wildtype peptide Platelet glycoprotein Ib alpha chain 2807 KMWFCAKIRVLSL wildtype peptide Probable cation-transporting ATPase 13A3 RA1L2_HUMAN_00145;F8VRQ1_HUMAN_00145;F8VSB5_HUMAN_00145;F8VTQ5_HUMAN_0009 6;F8VXY0_HUMAN_00145;F8VYN5_HUMAN_00100;F8VZ49_HUMAN_00164;F8W1S7_HUMAN_0 0145;F8W6I7_HUMAN_00145;H0YH80_HUMAN_00016;ROA1_HUMAN_00145;ROA1_HUMAN_00 2808 DRGSGKKRGFAFV wildtype peptide Heterogeneous nuclear ribonucleoprotein A1 145 2809 DPEYKKKFRANPV wildtype peptide Protein FAM161A H7C4C9_HUMAN_00277;F161A_HUMAN_00172;F161A_HUMAN_00281 2810 LEKAIAKDLLQTQ wildtype peptide Sentan C9JRU3_HUMAN_00083;C9JXY5_HUMAN_00079 2811 TTSYKLKRHLQSH wildtype peptide Zinc finger X-linked protein ZXDA ZXDC_HUMAN_00226;ZXDB_HUMAN_00322;ZXDC_HUMAN_00226 2812 NKILREKEEIDQE wildtype peptide Centrosomal protein of 290 kDa 2813 KDPHGEKREFQDA wildtype peptide Death-inducer obliterator 1 2814 LYNTALKPGHAAA wildtype peptide Glycosyltransferase 8 domain-containing protein 1 E7EMX8_HUMAN_00020;GL8D1_HUMAN_00189 2815 MITDSGKFSGSSP wildtype peptide FH1/FH2 domain-containing protein 3 E7ETX5_HUMAN_00507;FHOD3_HUMAN_01265;FHOD3_HUMAN_01303 VIP1_HUMAN_00281;A8MYH2_HUMAN_00281;B7WPL9_HUMAN_00281;D6RBU4_HUMAN_0019 2;D6RFZ8_HUMAN_00270;E9PGM8_HUMAN_00270;F8W9A8_HUMAN_00281;H7BXU5_HUMAN_ Inositol hexakisphosphate and diphosphoinositol- 00282;VIP2_HUMAN_00270;VIP1_HUMAN_00281;VIP1_HUMAN_00281;VIP1_HUMAN_00281;VIP 2816 SPALDGKVERDSE wildtype peptide pentakisphosphate kinase 2 1_HUMAN_00281;VIP1_HUMAN_00281;VIP1_HUMAN_00281 2817 SSGRKSKRNEEQK wildtype peptide Leucine-rich repeat and death domain-containing protein 1 2818 AELERTKEEKQEL wildtype peptide MORC family CW-type zinc finger protein 4 A1YR24_HUMAN_00598;H7BXF1_HUMAN_00850 2819 ENLTLGKKAELQS wildtype peptide POM121-like protein 2 2820 SSDSSSKLAKKRK wildtype peptide AF4/FMR2 family member 1 E9PBM3_HUMAN_00816;F5GXF9_HUMAN_00447;F5H1V4_HUMAN_00468 2821 EKVFDPKVFTFGL wildtype peptide Absent in melanoma 1 protein A6NBZ8_HUMAN_00229;B7WNR0_HUMAN_00114;D6RHD5_HUMAN_00079;E7ESU5_HUMAN_0 2822 KCASLQKFGERAF wildtype peptide Serum albumin 0238;H0YA55_HUMAN_00074 Q5SYQ7_HUMAN_00065;Q5SYQ8_HUMAN_00065;Q5SYQ9_HUMAN_00065;E7ER57_HUMAN_00 2823 DVDKAVKAARQAF wildtype peptide Retinal dehydrogenase 1 065;H0Y4S2_HUMAN_00079 2824 KDEKSLKRIKDTN wildtype peptide Ankyrin repeat domain-containing protein 11 B3KRQ1_HUMAN_00059;H0YL33_HUMAN_00059;H0YM50_HUMAN_00145;H0YMD0_HUMAN_00 176;H0YMU9_HUMAN_00176;H0YN28_HUMAN_00059;H0YN42_HUMAN_00176;H0YNA0_HUMAN 2825 LMVALAKGRRAED wildtype peptide Annexin A2 _00059;H0YNP5_HUMAN_00111;AXA2L_HUMAN_00176;ANXA2_HUMAN_00194 2826 IFNYKGKNVLINK wildtype peptide Calreticulin H3BNU9_HUMAN_00068;H3BPY5_HUMAN_00068;H3BSW7_HUMAN_00068;H3BUY4_HUMAN_0 2827 VYKGVCKCFCRSK wildtype peptide Calcium-regulated heat stable protein 1 0068 2828 LDRRVVKGKVEYL wildtype peptide Chromobox protein homolog 1 B5MD17_HUMAN_00033;C9JWS9_HUMAN_00033;E9PCS5_HUMAN_00033 2829 MFLMKWKNSDEAD wildtype peptide Chromobox protein homolog 1 B5MD17_HUMAN_00143;E9PCS5_HUMAN_00143 2830 QVEYLLKWKGFSE wildtype peptide Chromobox protein homolog 5 F8VNY3_HUMAN_00040;G3V1X9_HUMAN_00040 2831 MFLMKWKDTDEAD wildtype peptide Chromobox protein homolog 5 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, Q96G95_HUMAN_00192;A8MY43_HUMAN_00192;E9PF13_HUMAN_00192;H3BS02_HUMAN_001 2832 VRYFLDKTLTSRL wildtype peptide mitochondrial 92;H3BTL2_HUMAN_00183 H0YCJ2_HUMAN_00713;H0YGI7_HUMAN_00892;H7C0R8_HUMAN_00892;PLCB1_HUMAN_0097 2833 LEKSAKKDSKKKS wildtype peptide 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 2 2834 SVKVGDKVLLPEY wildtype peptide 10 kDa heat shock protein, mitochondrial B8ZZ54_HUMAN_00015;B8ZZL8_HUMAN_00070 2835 ATQPESKVFYLKM wildtype peptide 14-3-3 protein beta/alpha 2836 SKVFYYKMKGDYH wildtype peptide 14-3-3 protein epsilon 2837 ISSIEQKTDTSDK wildtype peptide 14-3-3 protein theta B4DMT8_HUMAN_00033;E9PG15_HUMAN_00068 2838 LYHLIKKAVAVRK wildtype peptide 40S ribosomal protein S13 2839 SLVIPEKFQHILR wildtype peptide 40S ribosomal protein S18 2840 ALAAFLKKSGKLK wildtype peptide 40S ribosomal protein S19 Acetylome - Acetyltransferase Microarray page 79 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2841 FTDHLVKTHTRVS wildtype peptide 40S ribosomal protein S2 H0YEN5_HUMAN_00177;E9PQD7_HUMAN_00217

2842 ERKNRMKKVRGTA wildtype peptide 40S ribosomal protein S24 E7EPK6_HUMAN_00115;E7ETK0_HUMAN_00115;RS24_HUMAN_00115;RS24_HUMAN_00115 2843 LQELLSKGLIKLV wildtype peptide 40S ribosomal protein S25 2844 NRGPLDKWRALHS wildtype peptide 60S ribosomal protein L10 2845 AEEILEKGLKVRE wildtype peptide 60S ribosomal protein L11 Q5VVC8_HUMAN_00083;Q5VVC9_HUMAN_00083;RL11_HUMAN_00084 2846 LKPHFHKDWQRRV wildtype peptide 60S ribosomal protein L13 F5H1S2_HUMAN_00016;H3BTH3_HUMAN_00016 2847 VRQAWQKADINTK wildtype peptide 60S ribosomal protein L14 B7Z6S8_HUMAN_00079;E7EPB3_HUMAN_00079 2848 ITKPVHKHKEMRG wildtype peptide 60S ribosomal protein L15 2849 SAPRRNKLDHYAI wildtype peptide 60S ribosomal protein L23a A8MUS3_HUMAN_00108;A8MXA8_HUMAN_00072;H7BY10_HUMAN_00072 2850 LDMLAEKLPNLTH wildtype peptide Acidic leucine-rich nuclear phosphoprotein 32 family member B 2851 PGGTGIKPFLERF wildtype peptide Actin-binding protein anillin C9J4Z7_HUMAN_00082;C9J6C8_HUMAN_00082;C9JBJ7_HUMAN_00082;C9JEY1_HUMAN_0008 2;C9JFG9_HUMAN_00082;C9JQM8_HUMAN_00082;C9K057_HUMAN_00082;F8WCG3_HUMAN_0 2852 AYVWTLKGRTWKP wildtype peptide Actin-related protein 2/3 complex subunit 1B 0082 2853 FKNYEIKNEADRT wildtype peptide Actin-related protein 2/3 complex subunit 3 B4DM63_HUMAN_00061;C9JZD1_HUMAN_00061;F8VR50_HUMAN_00053 2854 LVKEFNKYDTDGS wildtype peptide Actin-related protein 3 B4DTI0_HUMAN_00115;B4DXW1_HUMAN_00193;F5H3P5_HUMAN_00182 2855 VLSGKYKSGEQIL wildtype peptide Actin-related protein 6 F8VSD1_HUMAN_00180;F8W057_HUMAN_00262;G3V1Y1_HUMAN_00180 2856 KDEIDVKFKDVAG wildtype peptide AFG3-like protein 2 2857 RFIDFFKRNEHTY wildtype peptide Alanine--tRNA ligase, cytoplasmic A8MYB8_HUMAN_00007;C9JKT2_HUMAN_00007;C9JMC5_HUMAN_00007;E9PNN6_HUMAN_00 2858 ZZZZMSKISEAVK wildtype peptide Aldehyde dehydrogenase, dimeric NADP-preferring 007 2859 VDETQFKKILGYI wildtype peptide Aldehyde dehydrogenase, mitochondrial E7EUE5_HUMAN_00321;F8VXI5_HUMAN_00292;F8W0A9_HUMAN_00228 2860 GDDLFPKDDKGNA wildtype peptide Aldo-keto reductase family 1 member B10 2861 ZZZMDSKYQCVKL wildtype peptide Aldo-keto reductase family 1 member C2 AK1C1_HUMAN_00007;B4DK69_HUMAN_00007;B4DKR9_HUMAN_00007

H0YKL9_HUMAN_00104;H0YKS4_HUMAN_00104;H0YKX9_HUMAN_00104;H0YKZ7_HUMAN_001 04;H0YLV6_HUMAN_00104;H0YM50_HUMAN_00073;H0YMD0_HUMAN_00104;H0YMM1_HUMAN _00104;H0YMT9_HUMAN_00104;H0YMU9_HUMAN_00104;H0YMW4_HUMAN_00132;H0YN42_HU 2862 VILGLLKTPAQYD wildtype peptide Annexin A2 MAN_00104;H0YNP5_HUMAN_00039;AXA2L_HUMAN_00104;ANXA2_HUMAN_00122 B3KRQ1_HUMAN_00040;H0YKS4_HUMAN_00157;H0YL33_HUMAN_00040;H0YM50_HUMAN_00 126;H0YMD0_HUMAN_00157;H0YMU9_HUMAN_00157;H0YN28_HUMAN_00040;H0YN42_HUMA N_00157;H0YN52_HUMAN_00040;H0YNA0_HUMAN_00040;H0YNP5_HUMAN_00092;AXA2L_HU 2863 YKTDLEKDIISDT wildtype peptide Annexin A2 MAN_00157;ANXA2_HUMAN_00175 2864 FKRKYGKSLYYYI wildtype peptide Annexin A2 AXA2L_HUMAN_00313;ANXA2_HUMAN_00331 2865 SLYSFIKGDTSGD wildtype peptide Annexin A4 B4DDF9_HUMAN_00218;Q6P452_HUMAN_00280 2866 YDAYELKHALKGA wildtype peptide Annexin A5 D6RBL5_HUMAN_00037;E7ENQ5_HUMAN_00097;E9PHT9_HUMAN_00097 A6NN80_HUMAN_00075;E5RI05_HUMAN_00075;E5RIU8_HUMAN_00075;E5RJF5_HUMAN_0004 3;E5RJR0_HUMAN_00075;E5RK63_HUMAN_00043;E9PGK1_HUMAN_00043;E5RFF0_HUMAN_0 2867 DLIADLKYELTGK wildtype peptide Annexin A6 0075 2868 DTIINQKRFNDGS wildtype peptide ATP synthase subunit alpha, mitochondrial 2869 AQTRAMKQVAGTM wildtype peptide ATP synthase subunit alpha, mitochondrial 2870 TIRADGKISEQSD wildtype peptide ATP synthase subunit alpha, mitochondrial 2871 QQALVQKRHYLFD wildtype peptide ATP synthase subunit b, mitochondrial 2872 DSGAPIKIPVGPE wildtype peptide ATP synthase subunit beta, mitochondrial F8VPV9_HUMAN_00133;F8W079_HUMAN_00072;H0YH81_HUMAN_00070 2873 GKLVPLKETIKGF wildtype peptide ATP synthase subunit beta, mitochondrial F8VPV9_HUMAN_00474;F8VQY0_HUMAN_00188 B4DNM1_HUMAN_00147;Q5T8D1_HUMAN_00147;Q5T8D2_HUMAN_00172;Q96I63_HUMAN_002 2874 IAPSFVKGFLLRD wildtype peptide ATP-dependent zinc metalloprotease YME1L1 37;YMEL1_HUMAN_00180 2875 QYFQKEKIQGEYK wildtype peptide ATP-dependent RNA helicase A 2876 MSHLPMKLLRKKI wildtype peptide ATP-dependent RNA helicase DDX18 Acetylome - Acetyltransferase Microarray page 80 of 167

Sequence PEP_FLAG Protein name Uniprot IDs DD19B_HUMAN_00229;B4DL69_HUMAN_00078;B4DRZ7_HUMAN_00138;E7EMK4_HUMAN_0020 3;F8W9W5_HUMAN_00120;H3BMQ5_HUMAN_00216;H3BN59_HUMAN_00229;H3BQE0_HUMAN _00078;H3BQK0_HUMAN_00234;H3BU52_HUMAN_00051;DD19B_HUMAN_00198;DD19B_HUMA 2877 DWCSKLKFIDPKK wildtype peptide ATP-dependent RNA helicase DDX19A N_00120 2878 NRSFSLKNVKHFV wildtype peptide ATP-dependent RNA helicase DDX39A B1Q2N1_HUMAN_00187;Q8N5M0_HUMAN_00187 2879 VKKVLDKFYKRKE wildtype peptide ATP-dependent RNA helicase SUPV3L1, mitochondrial 2880 VIQGYHKRREYIA wildtype peptide BRCA1-A complex subunit BRE H7BYD8_HUMAN_00172;BRE_HUMAN_00270;BRE_HUMAN_00270;BRE_HUMAN_00270 2881 KLEHLEKQVRLLN wildtype peptide BRI3-binding protein

2882 TNLFLQKPGSFSK wildtype peptide Bromodomain adjacent to zinc finger domain protein 2B BAZ2B_HUMAN_01362;BAZ2B_HUMAN_01428;BAZ2B_HUMAN_01266;BAZ2B_HUMAN_01426 B7ZLN5_HUMAN_00449;Q17RB6_HUMAN_00449;E9PI60_HUMAN_00449;E9PSF3_HUMAN_0044 2883 GVPKKSKMSLKQK wildtype peptide Bromodomain and PHD finger-containing protein 3 9;F6XDC4_HUMAN_00449;H0Y7B4_HUMAN_00422 B7ZLN5_HUMAN_00550;Q17RB6_HUMAN_00550;E9PI60_HUMAN_00550;E9PSF3_HUMAN_0055 2884 AVKEELKYWQKLR wildtype peptide Bromodomain and PHD finger-containing protein 3 0;F6XDC4_HUMAN_00550;H0Y7B4_HUMAN_00523 2885 ENGNYAKAARIAA wildtype peptide Bromodomain-containing protein 1 C9IYC8_HUMAN_00494;F5H6M9_HUMAN_00591;BRD1_HUMAN_01034 2886 GGKQLNKYDPFSR wildtype peptide CCAAT/enhancer-binding protein zeta 2887 YIRTKTKPHLFYI wildtype peptide Pinin 2888 LDHDNVKYLKKIL wildtype peptide Ganglioside-induced differentiation-associated protein 1 2889 PSRNDQKKTKVKK wildtype peptide Ras GTPase-activating protein 2 2890 DGKGEPKGAKRAK wildtype peptide Ras GTPase-activating-like protein IQGAP2 F5H7S7_HUMAN_00973;IQGA2_HUMAN_00967 2891 LKPDWGKGYSRKA wildtype peptide Stress-induced-phosphoprotein 1 F5GXD8_HUMAN_00073;F5H783_HUMAN_00073;G3XAD8_HUMAN_00120 2892 EAKCALKYLIGEL wildtype peptide Chromosome-associated kinesin KIF4A KIF4B_HUMAN_00868;F5H4Q9_HUMAN_00170;KIF4A_HUMAN_00868 2893 ATVEELKEKLRKR wildtype peptide Luc7-like protein 3 B4DJ96_HUMAN_00155;H0YA81_HUMAN_00051 2894 PNDPMFKLVAQLY wildtype peptide Citrate synthase, mitochondrial B4DJV2_HUMAN_00362;H0YIC4_HUMAN_00048 2895 NQYQALKPRLPLA wildtype peptide Claspin E7ESG2_HUMAN_00838;CLSPN_HUMAN_00827;CLSPN_HUMAN_00891 2896 AVNYFSKVKQLPL wildtype peptide Clathrin heavy chain 1 2897 IVLYAKKVGYTPD wildtype peptide Clathrin heavy chain 2 CLH1_HUMAN_00507;CLH2_HUMAN_00507;CLH1_HUMAN_00507 2898 TLLPRLKGYLISG wildtype peptide Cullin-associated NEDD8-dissociated protein 1 2899 VHAAADKHNSVED wildtype peptide Cyclin-T1 2900 AVYAAEKVIGAGK wildtype peptide Cysteine and glycine-rich protein 1 B3KVC9_HUMAN_00108;E9PND2_HUMAN_00094;E9PP21_HUMAN_00098 2901 TSSTPVKFISRGR wildtype peptide Cysteine-rich protein 2-binding protein E7EWR9_HUMAN_00105;CSR2B_HUMAN_00164 2902 YIKALSKDLPKAV wildtype peptide Cytochrome b-c1 complex subunit 1, mitochondrial 2903 QCEQLEKCVKARE wildtype peptide Cytochrome b-c1 complex subunit 6, mitochondrial Dihydrolipoyllysine-residue succinyltransferase component of 2- 2904 EMRARHKEAFLKK wildtype peptide oxoglutarate dehydrogenase complex, mitochondrial B7Z5W8_HUMAN_00181;Q86SW4_HUMAN_00250 2905 LGVVEKKKINNNC wildtype peptide Dihydroxyacetone phosphate acyltransferase 2906 TASTLLKPAPSGL wildtype peptide Integrator complex subunit 1 F5GX68_HUMAN_01115;H0YFC7_HUMAN_00983;DNMT1_HUMAN_01131;DNMT1_HUMAN_0077 2907 KGKGKGKGKGKPK wildtype peptide DNA (cytosine-5)-methyltransferase 1 9 2908 RDNKELKAFNIRL wildtype peptide DNA damage-binding protein 1 F5GWI0_HUMAN_00097;F5GY55_HUMAN_00153;F5H2L3_HUMAN_00097 Q5TG36_HUMAN_00035;Q5TG38_HUMAN_00035;Q5TG39_HUMAN_00035;Q5TG40_HUMAN_00 2909 DIINPDKKKSKKS wildtype peptide DNA methyltransferase 1-associated protein 1 035 DYR1B_HUMAN_00057;E7EMI5_HUMAN_00105;F8W9I9_HUMAN_00105;DYR1A_HUMAN_00096 DYR1A_HUMAN_00105;DYR1A_HUMAN_00105;DYR1A_HUMAN_00105;DYR1B_HUMAN_00057; 2910 DLIKTYKHINEVY wildtype peptide Dual specificity tyrosine-phosphorylation-regulated kinase 1A DYR1B_HUMAN_00057 C9JXE5_HUMAN_00604;E5RHK8_HUMAN_00594;DYN3_HUMAN_00594;DYN3_HUMAN_00594;D 2911 EQRNVYKDYRFLE wildtype peptide Dynamin-3 YN3_HUMAN_00604 2912 LAAAKSKLLKTWR wildtype peptide Dynein heavy chain 5, axonemal 2913 SREAKVKSKPRTV wildtype peptide Dysbindin A6NFV8_HUMAN_00033;F5GY46_HUMAN_00033;DTBP1_HUMAN_00033 Acetylome - Acetyltransferase Microarray page 81 of 167

Sequence PEP_FLAG Protein name Uniprot IDs A7E2D7_HUMAN_01517;EP400_HUMAN_01598;EP400_HUMAN_01561;EP400_HUMAN_01517;E 2914 LQFQGSKFTLSHS wildtype peptide E1A-binding protein p400 P400_HUMAN_01597 2915 YPVLYGKYLNGLG wildtype peptide E3 SUMO-protein ligase PIAS4 2916 AAGADIKEMQNLS wildtype peptide Enoyl-CoA hydratase, mitochondrial F2Z2Q0_HUMAN_00164;H7BYH1_HUMAN_00137;H7C1F6_HUMAN_00153;H7C2G3_HUMAN_000 2917 EVERVLKEFHQAG wildtype peptide ES1 protein homolog, mitochondrial 80;H7C455_HUMAN_00143 2918 LAQQIQKVVMALG wildtype peptide Eukaryotic initiation factor 4A-I

IF4A1_HUMAN_00054;IF4A2_HUMAN_00055;B4E102_HUMAN_00038;E7EQG2_HUMAN_00055;E 2919 YAYGFEKPSAIQQ wildtype peptide Eukaryotic initiation factor 4A-III 7EMV8_HUMAN_00055;E9PBH4_HUMAN_00055;F8WE11_HUMAN_00056;IF4A2_HUMAN_00056 Eukaryotic peptide chain release factor GTP-binding subunit ERF3B_HUMAN_00325;F5GWG9_HUMAN_00242;H3BR35_HUMAN_00202;ERF3A_HUMAN_0033 2920 FETGFEKGGQTRE wildtype peptide ERF3A 3 2921 TVQEKEKYLNVSR wildtype peptide Eukaryotic translation elongation factor 1 epsilon-1 2922 RRKGKGKGKARAG wildtype peptide F-box and WD-40 domain protein 4, isoform CRA_b 2923 LAESVEKAIEEKK wildtype peptide FACT complex subunit SPT16 2924 QSLNWTKIMKTIV wildtype peptide FACT complex subunit SPT16 2925 NWTKIMKTIVDDP wildtype peptide FACT complex subunit SPT16 2926 EREEYGKLFDFVN wildtype peptide FACT complex subunit SSRP1 2927 AWEEYYKKIGQQP wildtype peptide Far upstream element-binding protein 2 2928 QMRRNGKQWLLGK wildtype peptide Fumarylacetoacetate hydrolase domain-containing protein 2A 2929 KPSATGKVIDKKL wildtype peptide G2/mitotic-specific cyclin-B1 Q5TZP9_HUMAN_00073;D6RHI0_HUMAN_00073;E9PC90_HUMAN_00073 D3DUZ3_HUMAN_00212;E7EPR3_HUMAN_00156;H3BLV7_HUMAN_00152;H3BR65_HUMAN_00 2930 KRPVIVKVLSTTK wildtype peptide Gamma-interferon-inducible protein 16 050;H3BR88_HUMAN_00050;IF16_HUMAN_00208;IF16_HUMAN_00208 2931 FGYSYAKRMIDVQ wildtype peptide GDP-L-fucose synthase E9PKL9_HUMAN_00147;E9PP14_HUMAN_00147 2932 SVLNNLKGDKFIK wildtype peptide General transcription factor IIE subunit 1 2933 QIEESSKPVRLSQ wildtype peptide General transcription factor IIF subunit 2 2934 KDGFIPKNYIEMK wildtype peptide Growth factor receptor-bound protein 2 2935 ALVGVVKEAZZZZ wildtype peptide GrpE protein homolog 1, mitochondrial 2936 TSRVTYKNVPNWH wildtype peptide GTP-binding nuclear protein Ran B4DV51_HUMAN_00011;B5MDF5_HUMAN_00116;F5H018_HUMAN_00095 2937 TTHFELKHLSSGD wildtype peptide GTP:AMP phosphotransferase, mitochondrial B4DGD8_HUMAN_00238;B0QZ65_HUMAN_00238;C9IZ08_HUMAN_00238;F8W9S7_HUMAN_002 38;H0Y4E7_HUMAN_00069;H0Y7I9_HUMAN_00101;GAPD1_HUMAN_00238;GAPD1_HUMAN_00 2938 EKLFGEKGSDRFR wildtype peptide GTPase-activating protein and VPS9 domain-containing protein 1 238;GAPD1_HUMAN_00238;GAPD1_HUMAN_00238;GAPD1_HUMAN_00238 2939 TLKIPYKYEHNKA wildtype peptide Guanine nucleotide-binding protein G(q) subunit alpha D6R9P3_HUMAN_00278;D6RBZ0_HUMAN_00325;D6RD18_HUMAN_00281;ROAA_HUMAN_0033 2940 GHQNNYKPYZZZZ wildtype peptide Heterogeneous nuclear ribonucleoprotein A/B 0;ROAA_HUMAN_00283;ROAA_HUMAN_00284 2941 EEGHDPKEPEQLR wildtype peptide Heterogeneous nuclear ribonucleoprotein A3 2942 VEAIFSKYGKIAG wildtype peptide Heterogeneous nuclear ribonucleoprotein C-like 1 B4DTC3_HUMAN_00289;F5H6R6_HUMAN_00187;H0YA96_HUMAN_00196;H7BXN2_HUMAN_002 2943 QQSGYGKVSRRGG wildtype peptide Heterogeneous nuclear ribonucleoprotein D0 67;HNRPD_HUMAN_00322;HNRPD_HUMAN_00292;HNRPD_HUMAN_00273 H0Y6E7_HUMAN_00032;H3BNC1_HUMAN_00030;H3BR27_HUMAN_00030;H3BT71_HUMAN_000 2944 LEAVFGKYGRIVE wildtype peptide RNA-binding motif protein, X chromosome 30;RBMX_HUMAN_00030;RBMX_HUMAN_00030 2945 LLEWESKSDALET wildtype peptide Heterogeneous nuclear ribonucleoprotein L 2946 YHLLAEKIYKIQK wildtype peptide Histone acetyltransferase p300 CBP_HUMAN_00657;Q4LE28_HUMAN_00687 2947 SNDLSQKLYATME wildtype peptide Histone acetyltransferase p300 CBP_HUMAN_01620;Q4LE28_HUMAN_01650 2948 QEEEERKREENTS wildtype peptide Histone acetyltransferase p300 2949 DSKNAKKKNNKKT wildtype peptide Histone acetyltransferase p300 CBP_HUMAN_01587;Q4LE28_HUMAN_01617 2950 NNKKTSKNKSSLS wildtype peptide Histone acetyltransferase p300 2951 DRLTSAKELPYFE wildtype peptide Histone acetyltransferase p300 CBP_HUMAN_01535;Q4LE28_HUMAN_01565;E9PEX7_HUMAN_00124 2952 SKKAINKAQKKDG wildtype peptide Histone H2B type 1-M Acetylome - Acetyltransferase Microarray page 82 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 2953 SKKAVTKVQKKDG wildtype peptide Histone H2B type 2-F B4DR52_HUMAN_00021;H2B2F_HUMAN_00021 2954 ZMPDPSKSAPAPK wildtype peptide Histone H2B type 3-B 2955 RKQLATKVARKSA wildtype peptide Histone H3.1t 2956 ATKAARKSAPSTG wildtype peptide Histone H3.3 2957 RKQLATKAARKSA wildtype peptide Histone H3.1 H33_HUMAN_00024;H32_HUMAN_00024;B4DEB1_HUMAN_00024;Q5TEC6_HUMAN_00024 ING4_HUMAN_00112;ING4_HUMAN_00088;ING4_HUMAN_00112;ING4_HUMAN_00112;ING4_HU 2958 RFEADLKEKQIES wildtype peptide Inhibitor of growth protein 4 MAN_00112;ING4_HUMAN_00112;ING4_HUMAN_00112 ING4_HUMAN_00147;ING4_HUMAN_00124;ING4_HUMAN_00144;ING4_HUMAN_00145;ING4_HU 2959 RARSKGKNSDEEA wildtype peptide Inhibitor of growth protein 4 MAN_00147;ING4_HUMAN_00145;ING4_HUMAN_00148 2960 SSSKGKKSRTQKE wildtype peptide Isoform 2 of Inhibitor of growth protein 4 ING4_HUMAN_00160;ING4_HUMAN_00137;ING4_HUMAN_00157;ING4_HUMAN_00158;ING4_HU 2961 PKTAQKKLKLVRT wildtype peptide Inhibitor of growth protein 4 MAN_00160;ING4_HUMAN_00158;ING4_HUMAN_00161 2962 PRWSNAKMEIATK wildtype peptide Inorganic pyrophosphatase E2QRM6_HUMAN_00243;F8WDN9_HUMAN_00159;IPYR2_HUMAN_00276;IPYR2_HUMAN_00232 2963 NGEFKNKAFALEV wildtype peptide Inorganic pyrophosphatase 2, mitochondrial ;IPYR2_HUMAN_00095 2964 LQSLAGKHGDDLR wildtype peptide Keratin, type II cytoskeletal 8 F8VXB4_HUMAN_00323;F8VU64_HUMAN_00295 KH domain-containing, RNA-binding, signal transduction- 2965 PVKQYPKFNFVGK wildtype peptide associated protein 1 KHDR2_HUMAN_00073;E7ET98_HUMAN_00145;F5H5F6_HUMAN_00073;KHDR1_HUMAN_00144 E7EVH7_HUMAN_00565;F8VTM4_HUMAN_00393;F8W6L3_HUMAN_00393;G3V2E7_HUMAN_00 393;G3V3H3_HUMAN_00393;G3V5R9_HUMAN_00393;G5E9S8_HUMAN_00391;KLC1_HUMAN_0 0393;KLC1_HUMAN_00393;KLC1_HUMAN_00393;KLC1_HUMAN_00393;KLC1_HUMAN_00393;KL 2966 LASCYLKQGKFKQ wildtype peptide Kinesin light chain 1 C1_HUMAN_00393;KLC1_HUMAN_00393;KLC1_HUMAN_00393 2967 GDKYIAKFQGEDT wildtype peptide Kinesin-1 heavy chain 2968 HVVMELKEKAVIF wildtype peptide Kinetochore-associated protein 1 2969 AHPGCGKSYTKSS wildtype peptide Krueppel-like factor 1 2970 FTRPLFKDLAAFD wildtype peptide Leukotriene A-4 hydrolase B4DGQ0_HUMAN_00072;C9J9W2_HUMAN_00092;C9JVR8_HUMAN_00128;LASP1_HUMAN_001 2971 YHEEFEKSRMGPS wildtype peptide LIM and SH3 domain protein 1 28 2972 MAANEEKDRKIED wildtype peptide Liprin-beta-1 F5GZP6_HUMAN_00150;LIPB1_HUMAN_00302;LIPB1_HUMAN_00169;LIPB1_HUMAN_00291 B7Z3Z9_HUMAN_00461;B7Z452_HUMAN_00632;E7EPM6_HUMAN_00598;H0Y9U7_HUMAN_002 2973 RNKDVKKAILEDM wildtype peptide Long-chain-fatty-acid--CoA ligase 1 28;ACSL1_HUMAN_00622 2974 RRDGPMKFEKDFD wildtype peptide Protein LSM14 homolog A B4DTG6_HUMAN_00250;LS14A_HUMAN_00291 2975 KVQFQGKKTKFAS wildtype peptide Lupus La protein 2976 AATAAEKYKHRGE wildtype peptide Methyl-CpG-binding protein 2 Methylmalonic aciduria and homocystinuria type D protein, 2977 REVLLEKFINGAK wildtype peptide mitochondrial F5H6X2_HUMAN_00055;F5H760_HUMAN_00019;F5H7F6_HUMAN_00055;G5EA53_HUMAN_0005 2978 DCVAFGKGENAKK wildtype peptide Microsomal glutathione S-transferase 1 5 B4E2T3_HUMAN_00053;E9PLY5_HUMAN_00048;E9PS75_HUMAN_00053;F5GZL7_HUMAN_0009 0;F8W8Q1_HUMAN_00090;H3BPE1_HUMAN_00053;H3BQK9_HUMAN_00090;H7BZ03_HUMAN_ 2979 FTKWVNKHLMKVR wildtype peptide Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 00106;MACF1_HUMAN_00090;MACF1_HUMAN_00055;MACF1_HUMAN_00090 2980 RLTEYQKNELKIY wildtype peptide Midasin 2981 QTAPPGKYPNGFR wildtype peptide Mitochondrial carnitine/acylcarnitine carrier protein B4DWZ5_HUMAN_00194;C9JPE1_HUMAN_00171 D6R9J8_HUMAN_00116;D6RAH2_HUMAN_00116;D6RCM6_HUMAN_00116;D6RG21_HUMAN_00 2982 SPESEDKYRKINE wildtype peptide Myocyte-specific enhancer factor 2C 116;D6RJG6_HUMAN_00116;MEF2C_HUMAN_00116;MEF2C_HUMAN_00116 C9JMZ0_HUMAN_00250;D6R9J8_HUMAN_00252;D6RAH2_HUMAN_00252;D6RJG6_HUMAN_002 52;F8W7V7_HUMAN_00270;MEF2C_HUMAN_00252;MEF2C_HUMAN_00252;MEF2C_HUMAN_00 2983 LGMNNRKPDLRVL wildtype peptide Myocyte-specific enhancer factor 2C 204 Q5T9U4_HUMAN_00244;MEF2D_HUMAN_00244;MEF2D_HUMAN_00199;MEF2D_HUMAN_00245 2984 NGNSLNKVIPAKS wildtype peptide Myocyte-specific enhancer factor 2D ;MEF2D_HUMAN_00244;MEF2D_HUMAN_00199 Acetylome - Acetyltransferase Microarray page 83 of 167

Sequence PEP_FLAG Protein name Uniprot IDs C9JCN0_HUMAN_00884;F8W8J4_HUMAN_00884;H0YD14_HUMAN_00259;MYOF_HUMAN_0084 2985 GLVGRHKFSDVTG wildtype peptide Myoferlin 2;MYOF_HUMAN_00884;MYOF_HUMAN_00884;MYOF_HUMAN_00871

2986 DKTFVEKLVQEQG wildtype peptide Myosin-10 F8VTL3_HUMAN_00562;F8W6L6_HUMAN_00568;MYH10_HUMAN_00568;MYH10_HUMAN_00552 MYH10_HUMAN_00078;Q5BKV1_HUMAN_00074;B1AH99_HUMAN_00074;E7ERA5_HUMAN_000 78;F8VTL3_HUMAN_00078;F8W6L6_HUMAN_00078;MYH10_HUMAN_00078;MYH10_HUMAN_00 2987 NKDDIQKMNPPKF wildtype peptide Myosin-9 078 C9IZ93_HUMAN_00009;C9J212_HUMAN_00009;C9J9P8_HUMAN_00009;C9JF62_HUMAN_00009 C9JFD2_HUMAN_00009;C9JSK8_HUMAN_00009;F2Z363_HUMAN_00009;F8WB39_HUMAN_000 09;F8WD80_HUMAN_00009;F8WDQ9_HUMAN_00009;F8WFB7_HUMAN_00009;G5E9R6_HUMA N_00009;H3BSR4_HUMAN_00009;H3BUI7_HUMAN_00009;UBE2F_HUMAN_00009;UBE2F_HUM 2988 TLASKLKRDDGLK wildtype peptide NEDD8-conjugating enzyme UBE2F AN_00009;UBE2F_HUMAN_00009;UBE2F_HUMAN_00009 H3BMX9_HUMAN_00144;H3BNK9_HUMAN_00044;H3BU93_HUMAN_00067;H3BUL4_HUMAN_00 2989 VKPIETKNKFSQA wildtype peptide Protein FAM192A 144 2990 TKVYKAKYPIVGY wildtype peptide Neudesin C9JCM7_HUMAN_00104;H0Y5G7_HUMAN_00105;H7BZU5_HUMAN_00155;NBAS_HUMAN_0093 2991 EKHGLEKPISFVK wildtype peptide Neuroblastoma-amplified sequence 7 2992 AESQILKHLLKNL wildtype peptide Nicotinamide N-methyltransferase 2993 NGLKFCKQILSNP wildtype peptide N-alpha-acetyltransferase 15, NatA auxiliary subunit 2994 MDLTKSKDPPGEK wildtype peptide Nuclear receptor-interacting protein 1 2995 PVGGGQKLLTRKA wildtype peptide Nucleolar and coiled-body phosphoprotein 1 NOLC1_HUMAN_00425;NOLC1_HUMAN_00416 2996 QRTVLEKEMRSLG wildtype peptide Nucleolar GTP-binding protein 1 B4DY13_HUMAN_00406;B7Z7A3_HUMAN_00475 2997 KKAKKAKIKVKVE wildtype peptide Nucleolar protein 58 2998 QKRSFSKAFGQZZ wildtype peptide Nucleolar RNA helicase 2 Q9BQ02_HUMAN_00124;C9J1H7_HUMAN_00108;C9JLB1_HUMAN_00108;C9JWL1_HUMAN_001 2999 LVATPGKKGAAIP wildtype peptide Nucleolin 08;C9JYW2_HUMAN_00108 3000 ALATPPKLHTCEK wildtype peptide PDZ and LIM domain protein 2 E5RGS7_HUMAN_00076;H0YBP7_HUMAN_00094;PDLI2_HUMAN_00282 3001 EKGFGYKGSCFHR wildtype peptide Peptidyl-prolyl cis-trans isomerase A B4DM82_HUMAN_00049;C9J5S7_HUMAN_00049;F8WE65_HUMAN_00049 3002 KHVVFGKVKEGMN wildtype peptide Peptidyl-prolyl cis-trans isomerase A B4DM82_HUMAN_00095;Q567Q0_HUMAN_00071 3003 FADVVPKTAENFR wildtype peptide Peptidyl-prolyl cis-trans isomerase H Q6FH36_HUMAN_00038;A6NM32_HUMAN_00012;C9JQD4_HUMAN_00012 3004 TDWLDGKHVVFGH wildtype peptide Peptidyl-prolyl cis-trans isomerase F, mitochondrial E9PAX8_HUMAN_00216;F8W0Q9_HUMAN_00253;F8W6A0_HUMAN_00115;F8WF16_HUMAN_00 168;PPHLN_HUMAN_00242;PPHLN_HUMAN_00180;PPHLN_HUMAN_00187;PPHLN_HUMAN_00 3005 LAEAASKWAAEKL wildtype peptide Periphilin-1 187;PPHLN_HUMAN_00051;PPHLN_HUMAN_00235 3006 PVAVELKSLLGKD wildtype peptide Phosphoglycerate kinase 1 PGK2_HUMAN_00086;B7Z7A9_HUMAN_00058 3007 ELNYFAKALESPE wildtype peptide Phosphoglycerate kinase 1 B4DHM5_HUMAN_00024;B4E1H9_HUMAN_00109;B7Z7A9_HUMAN_00171 B4DHM5_HUMAN_00231;B4E1H9_HUMAN_00316;B7Z7A9_HUMAN_00378;E7ERH5_HUMAN_00 3008 LELLEGKVLPGVD wildtype peptide Phosphoglycerate kinase 1 270 3009 HGEAQVKIWRHSY wildtype peptide Phosphoglycerate mutase 1 3010 EIVPQIKEGKRVL wildtype peptide Phosphoglycerate mutase 1 PGAM4_HUMAN_00176;E7EMA8_HUMAN_00066;F2Z2J9_HUMAN_00176 3011 YRSAASKTMNIYF wildtype peptide Phospholipase A-2-activating protein E5RIM3_HUMAN_00529;H0YBW4_HUMAN_00202;H0YC16_HUMAN_00056

3012 DEKKIIKDILKDK wildtype peptide Pre-mRNA-processing factor 40 homolog A E9PHJ7_HUMAN_00549;F8W9L2_HUMAN_00662;PR40A_HUMAN_00653;PR40A_HUMAN_00662 3013 HQRHDGKLWNLNN wildtype peptide Pre-mRNA-processing-splicing factor 8

3014 ASSEFAKKKSILE wildtype peptide Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 3015 ARVILEKATKVNF wildtype peptide Pre-mRNA-splicing factor SYF1 3016 KYQQLQKDLSKSM wildtype peptide Prefoldin subunit 6 Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, 3017 EKDWFAKRFEELQ wildtype peptide mitochondrial Acetylome - Acetyltransferase Microarray page 84 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3018 LNLYELKEGRQIK wildtype peptide Proteasome subunit beta type-3 3019 VQEMAGKIDLLRD wildtype peptide E3 ubiquitin-protein ligase RNF213 B2RCF7_HUMAN_00244;F5GZM0_HUMAN_00283;BANP_HUMAN_00244;BANP_HUMAN_00220 3020 NLSGQGKHGKKQL wildtype peptide Protein BANP BANP_HUMAN_00244;BANP_HUMAN_00250 3021 ZZZZZMKAAVDLK wildtype peptide Protein C-ets-1 Q96AC5_HUMAN_00007;F5GYX9_HUMAN_00007;ETS1_HUMAN_00007 3022 TIIKTEKVDLELF wildtype peptide Protein C-ets-1 Q96AC5_HUMAN_00018;F5GYX9_HUMAN_00018;ETS1_HUMAN_00018 3023 AFAPYNKPSLSGA wildtype peptide Protein deltex-2 E7ET89_HUMAN_00158;F5GX89_HUMAN_00158;DTX2_HUMAN_00249

3024 TEFEDIKSGYRID wildtype peptide Protein SET A6NGV1_HUMAN_00108;Q5VXV2_HUMAN_00110;B2REB8_HUMAN_00107;SET_HUMAN_00119 3025 DPSVKIKTTMDLM wildtype peptide Protein Shroom2 B3KU73_HUMAN_00176;C9IZC6_HUMAN_00176;F5H3B6_HUMAN_00176 3026 PFPTGYKRQREYE wildtype peptide Protein SPT2 homolog F8W8H8_HUMAN_00414;SBNO1_HUMAN_00414;SBNO1_HUMAN_00413;SBNO1_HUMAN_0041 3027 QSGGKYKTRLKQL wildtype peptide Protein strawberry notch homolog 1 4 3028 AKVKEFKSKLGKE wildtype peptide Protein TMED8 3029 FLCHMHKEIRQLL wildtype peptide Protein transport protein Sec24C B4DZT4_HUMAN_00335;E7EP00_HUMAN_00968 MOES_HUMAN_00258;RADI_HUMAN_00258;A7YIJ8_HUMAN_00258;E7EQR4_HUMAN_00226;F5 3030 DKKFVIKPIDKKA wildtype peptide Ezrin H1A7_HUMAN_00122;H7BZI4_HUMAN_00258 MOES_HUMAN_00253;RADI_HUMAN_00253;A7YIJ8_HUMAN_00253;E7EQR4_HUMAN_00221;F5 3031 NISFNDKKFVIKP wildtype peptide Ezrin H1A7_HUMAN_00117;H7BZI4_HUMAN_00253 3032 PVFVFQKDKGQKS wildtype peptide Ran-binding protein 3 3033 AEKVAEKLEALSV wildtype peptide Ran-specific GTPase-activating protein C9JXG8_HUMAN_00132;H7C137_HUMAN_00110 D6RB97_HUMAN_00139;E9PH06_HUMAN_00139;G5E9P9_HUMAN_00231;GDS1_HUMAN_00181 3034 IAEELVKLFKKQI wildtype peptide Rap1 GTPase-GDP dissociation stimulator 1 ;GDS1_HUMAN_00182 3035 LPHEVDKSELKDF wildtype peptide Ras GTPase-activating protein-binding protein 1 F5H4D6_HUMAN_00171;F8W7N6_HUMAN_00195 3036 IYKQYFKSNFPAR wildtype peptide Ribonuclease UK114 H0YB34_HUMAN_00112;H0YBX3_HUMAN_00091 E9PD78_HUMAN_00279;H0YFI0_HUMAN_00289;E9PL69_HUMAN_00154;F5H861_HUMAN_0003 3037 LYASYEKQGRVRK wildtype peptide Ribonucleoside-diphosphate reductase large subunit 8 3038 DIEALKKLNKNKK wildtype peptide 60S ribosomal protein L10a 3039 HVATCSKYQNYIM wildtype peptide RING finger protein 114 C9JU49_HUMAN_00112;RN114_HUMAN_00112 3040 GVVETAKVYQLGG wildtype peptide RNA polymerase-associated protein RTF1 homolog 3041 GRPEGGKFDFGKH wildtype peptide RNA-binding protein 12B 3042 KLAMDLKGKMPNK wildtype peptide Serine/threonine-protein kinase PRP4 homolog F5H2U2_HUMAN_00891;H0YDJ3_HUMAN_00485 3043 VAGKYSKEFFTKK wildtype peptide SRSF protein kinase 1 H3BLV9_HUMAN_00604;SRPK1_HUMAN_00759 3044 SDKYNLKPIPLKR wildtype peptide Serine/threonine-protein phosphatase 1 regulatory subunit 10 B4DZF8_HUMAN_00062;Q5T948_HUMAN_00062;Q5T949_HUMAN_00062;A6PVN5_HUMAN_000 68;A6PVN6_HUMAN_00085;A6PVN7_HUMAN_00027;A6PVN8_HUMAN_00027;A6PVN9_HUMAN_ 3045 NEGVKGKKLTFEY wildtype peptide Serine/threonine-protein phosphatase 2A activator 00027;PTPA_HUMAN_00062;PTPA_HUMAN_00062 3046 ERQDNPKLDSMRS wildtype peptide Serine/threonine-protein phosphatase 4 regulatory subunit 3A G3V5Z3_HUMAN_00642;P4R3A_HUMAN_00642;P4R3A_HUMAN_00416 3047 RVHQFEKIEQFVY wildtype peptide Serine--tRNA ligase, cytoplasmic

3048 SGHPSEKEIKAQQ wildtype peptide Spectrin beta chain, brain 1 B2ZZ89_HUMAN_00924;D6W5C0_HUMAN_00838;SPTB2_HUMAN_00924;SPTB2_HUMAN_00911 3049 IDFDKLKDSNARH wildtype peptide Spectrin beta chain, erythrocyte Q59FP5_HUMAN_00230;SPTB1_HUMAN_00226;SPTB1_HUMAN_00226 3050 ISADTHKYGYAPK wildtype peptide Sphingosine-1-phosphate lyase 1

B4DIJ6_HUMAN_00141;B4DP52_HUMAN_00110;Q5STU3_HUMAN_00188;E9PP12_HUMAN_0011 0;F6S4E6_HUMAN_00188;F6TRA5_HUMAN_00188;F6UJC5_HUMAN_00110;F6UN21_HUMAN_00 188;F6WLT2_HUMAN_00188;F8VQ10_HUMAN_00203;F8VZL8_HUMAN_00188;H0Y4V8_HUMAN_ 00088;H0Y557_HUMAN_00088;H0Y6G9_HUMAN_00088;H0Y6N8_HUMAN_00088;H0Y7G4_HUMA 3051 NKSLNLKHIKHFI wildtype peptide Spliceosome RNA helicase DDX39B N_00088;H0Y7X6_HUMAN_00088;H0Y800_HUMAN_00044;DX39B_HUMAN_00203 3052 IQAEFEKKWENGT wildtype peptide Splicing factor 3A subunit 3 Acetylome - Acetyltransferase Microarray page 85 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3053 ELLELLKAHKKAI wildtype peptide Splicing factor 3B subunit 1 3054 NANVLFKTKFVDG wildtype peptide Structural maintenance of chromosomes protein 2 3055 RRVIGAKKDQYFL wildtype peptide Structural maintenance of chromosomes protein 3 3056 RQKLLEKIEEKQK wildtype peptide Structural maintenance of chromosomes protein 3 3057 KMAVWAKKMTEIQ wildtype peptide Structural maintenance of chromosomes protein 4 E9PD53_HUMAN_00654;F5H0U7_HUMAN_00273;SMC4_HUMAN_00679 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, 3058 RYAPVAKDLASRD wildtype peptide mitochondrial D6RFM5_HUMAN_00335;E9PBJ5_HUMAN_00287;E9PEF8_HUMAN_00190 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, 3059 GCGKISKLYGDLK wildtype peptide mitochondrial E9PBJ5_HUMAN_00493;E9PEF8_HUMAN_00396 3060 SVTLLIKGPNKHT wildtype peptide T-complex protein 1 subunit zeta B4DPJ8_HUMAN_00346;A6NCD2_HUMAN_00332 3061 VLVEDTKVLVQNA wildtype peptide Talin-1 E7EWX9_HUMAN_00519;E9PGE8_HUMAN_00435;F8WF45_HUMAN_00519;TMF1_HUMAN_0052 3062 KVQLACKERDAAK wildtype peptide TATA element modulatory factor 2 3063 EKALKQKGITVKQ wildtype peptide TBC1 domain family member 24 H3BQ06_HUMAN_00314;TBC24_HUMAN_00314 3064 SPTTQSKHNTTSA wildtype peptide Telomere-associated protein RIF1 3065 GLKAPVKYEEDEF wildtype peptide Tesmin MTL5_HUMAN_00040;MTL5_HUMAN_00040 3066 VKRVTQKEELEKQ wildtype peptide Transcription factor MafG 3067 NTNTVPKLYRSVI wildtype peptide Transcription initiation factor IIA subunit 1 D6RGK3_HUMAN_00108;D6RIE8_HUMAN_00108;D6RIV9_HUMAN_00108;D6RIY1_HUMAN_0010 3068 TPLPLIKPYSGPR wildtype peptide Transcription initiation factor TFIID subunit 9 8 3069 QLHRALKMIVDPV wildtype peptide Transcription intermediary factor 1-beta 3070 EKDQAWKTLKERE wildtype peptide Transcriptional adapter 3 F8WDE0_HUMAN_00734;ATRX_HUMAN_00603;ATRX_HUMAN_00690;ATRX_HUMAN_00769;AT 3071 SIISKKKRQTQSE wildtype peptide Transcriptional regulator ATRX RX_HUMAN_00652;ATRX_HUMAN_00739 3072 YSLKLEKGDYTIR wildtype peptide Tripeptidyl-peptidase 2 3073 VGISSGKEIGALL wildtype peptide CCA tRNA nucleotidyltransferase 1, mitochondrial

TPM2_HUMAN_00112;TPM1_HUMAN_00112;TPM4_HUMAN_00076;B7Z596_HUMAN_00076;Q5T CU3_HUMAN_00112;Q5TCU8_HUMAN_00112;Q5VU58_HUMAN_00076;Q5VU59_HUMAN_00076; Q5VU61_HUMAN_00052;Q5VU66_HUMAN_00076;Q5VU72_HUMAN_00076;Q6ZN40_HUMAN_00 154;D9YZV2_HUMAN_00112;D9YZV3_HUMAN_00112;D9YZV8_HUMAN_00112;F5H7S3_HUMAN _00076;H0YK48_HUMAN_00076;H0YL52_HUMAN_00093;H0YNC7_HUMAN_00051;D6R904_HUM AN_00076;H0YKP3_HUMAN_00112;H0YKX5_HUMAN_00036;H0YL80_HUMAN_00025;H7BYY1_H UMAN_00076;TPM3_HUMAN_00076;TPM3_HUMAN_00076;TPM2_HUMAN_00112;TPM2_HUMAN _00076;TPM1_HUMAN_00056;TPM1_HUMAN_00112;TPM1_HUMAN_00112;TPM1_HUMAN_0007 3074 LATALQKLEEAEK wildtype peptide Tropomyosin alpha-3 chain 6;TPM1_HUMAN_00112;TPM1_HUMAN_00112;TPM4_HUMAN_00112 3075 TVAKLEKTIDDLE wildtype peptide Tropomyosin alpha-4 chain TBA4A_HUMAN_00326;TBA3C_HUMAN_00326;TBA3E_HUMAN_00326;TBA1A_HUMAN_00326;T BA1C_HUMAN_00326;A8MUB1_HUMAN_00311;F5H5D3_HUMAN_00396;G3V1U9_HUMAN_0029 3076 RGDVVPKDVNAAI wildtype peptide Tubulin alpha-1B chain 1;E9PGK3_HUMAN_00196;F8VXZ4_HUMAN_00173;TBA3C_HUMAN_00326 TBA4A_HUMAN_00311;TBA1A_HUMAN_00311;TBA1C_HUMAN_00311;A8MUB1_HUMAN_00296; F5H5D3_HUMAN_00381;G3V1U9_HUMAN_00276;E9PGK3_HUMAN_00181;F8VXZ4_HUMAN_001 3077 CDPRHGKYMACCL wildtype peptide Tubulin alpha-1B chain 58 B4DIZ2_HUMAN_00014;C9JGP1_HUMAN_00014;D6RDM7_HUMAN_00014;D6RFX1_HUMAN_000 3078 RIKREFKEVLKSE wildtype peptide Ubiquitin-conjugating enzyme E2 K 14;UBE2K_HUMAN_00014 3079 LPRRIIKETQRLL wildtype peptide Ubiquitin-conjugating enzyme E2 N F8VSD4_HUMAN_00010;F8VV71_HUMAN_00010;F8VZ29_HUMAN_00010 3080 QLVGIEKKFHPDV wildtype peptide Ubiquitin-conjugating enzyme E2 T 3081 SEFYSKKNTIMFD wildtype peptide Ubiquitin-like domain-containing CTD phosphatase 1 3082 YFKTEHKLEITML wildtype peptide Ubiquitin-like modifier-activating enzyme 1 B4DDE4_HUMAN_00496;Q5JRR6_HUMAN_00432;E7ERL1_HUMAN_00529 3083 QLLEDDKHLSDYC wildtype peptide Ubiquitin-like protein 4B Acetylome - Acetyltransferase Microarray page 86 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3084 AYRYLVKAFRAHR wildtype peptide UPF0562 protein C7orf55 3085 YGDNAEKYKDLVP wildtype peptide UPF0568 protein C14orf166 G3V4C6_HUMAN_00098;H0YJB9_HUMAN_00035 3086 TDVKKSKFCEADV wildtype peptide UPF0609 protein C4orf27 3087 EQGGKDKLQAHGI wildtype peptide Uridine 5-monophosphate synthase B5LY68_HUMAN_00070;E9PFD2_HUMAN_00162 3088 LYTVLHKTEDYLR wildtype peptide V-type proton ATPase 116 kDa subunit a isoform 2 Q8TBM3_HUMAN_00279;F5H5F3_HUMAN_00149 3089 ESYDYLKTLAGDV wildtype peptide Vacuolar protein sorting-associated protein 29 F8VXU5_HUMAN_00082;H3BLV8_HUMAN_00067;VPS29_HUMAN_00054 3090 KLITSDKVENFHE wildtype peptide Wings apart-like protein homolog E9PH12_HUMAN_00212;WAPL_HUMAN_00211;WAPL_HUMAN_00253 3091 SSTKSGKFMNPTD wildtype peptide WW domain-binding protein 11 F5GXS9_HUMAN_00013;F5H5G4_HUMAN_00013;F5H721_HUMAN_00013 Q5T6H2_HUMAN_00131;Q5T6H3_HUMAN_00131;Q5T6H7_HUMAN_00060;G5E9Y2_HUMAN_001 3092 PTDYWKKMAKVLR wildtype peptide Xaa-Pro aminopeptidase 1 74;G8JLB2_HUMAN_00174;XPP1_HUMAN_00131 F8W848_HUMAN_00338;F8W9T2_HUMAN_00357;G3V256_HUMAN_00357;G3V5I6_HUMAN_002 02;G3V5R4_HUMAN_00357;H0YJ87_HUMAN_00038;H0YJA2_HUMAN_00273;H9KV94_HUMAN_0 0357;ZC3HE_HUMAN_00357;ZC3HE_HUMAN_00357;ZC3HE_HUMAN_00323;ZC3HE_HUMAN_00 3093 NKNLILKAISEAQ wildtype peptide Zinc finger CCCH domain-containing protein 14 357 3094 MLQEYSKFLQQAL wildtype peptide Zinc finger protein 148 3095 SQNKFWKYGKHSV wildtype peptide E3 ubiquitin-protein ligase listerin H7BYG8_HUMAN_00308;LTN1_HUMAN_00262 3096 RVESQLKILIRPM wildtype peptide Aspartate aminotransferase, mitochondrial 3097 KLGILDKVVNSDP wildtype peptide Peroxisomal bifunctional enzyme F5GWL9_HUMAN_00171;ECHP_HUMAN_00075

3098 LPMYLSKEDIQDI wildtype peptide PMS1 protein homolog 1 B7ZAA0_HUMAN_00718;Q5FBZ6_HUMAN_00517;PMS1_HUMAN_00732;PMS1_HUMAN_00855 B7Z7J4_HUMAN_00250;C9J521_HUMAN_00321;P73_HUMAN_00272;P73_HUMAN_00321;P73_H UMAN_00321;P73_HUMAN_00321;P73_HUMAN_00321;P73_HUMAN_00321;P73_HUMAN_00272; 3099 LNESSAKNGAASK wildtype peptide Tumor protein p73 P73_HUMAN_00272 3100 AASCRIKRVTQKE wildtype peptide Transcription factor MafK 3101 MELIIGKKFKMPV wildtype peptide Aryl hydrocarbon receptor interacting protein 3102 SADAMLKALLGSK wildtype peptide Troponin I, fast skeletal muscle 3103 NIAGHLKDAQIFI wildtype peptide Catalase 3104 NELSDLKEDKPRK wildtype peptide BRCA1-associated RING domain protein 1 3105 WAHLIEKMFQPKN wildtype peptide Methylmalonyl-CoA mutase, mitochondrial 3106 EVKPGMKSRFVDS wildtype peptide CREB-binding protein 3107 DQEKSRKLHELTV wildtype peptide Kinesin-1 heavy chain 3108 KEVERKKLELDGE wildtype peptide Beta-adducin C9JTM0_HUMAN_00328;E9PAV0_HUMAN_00270 3109 PPVSFLKVLKLNK wildtype peptide Multidrug resistance protein 3 A4D1D5_HUMAN_00699;MDR3_HUMAN_00699 3110 QKPPALKATSVKE wildtype peptide Ankyrin repeat domain-containing protein 36B AN36B_HUMAN_00468;AN36B_HUMAN_00468 3111 GEHYILKTLGIKY wildtype peptide Arginase-1 ARGI1_HUMAN_00199;ARGI1_HUMAN_00191 Methylmalonate-semialdehyde dehydrogenase [acylating], 3112 GKFVESKSDKWID wildtype peptide mitochondrial 3113 GREGEEKPPLSAE wildtype peptide Dimethylglycine dehydrogenase, mitochondria E5RG50_HUMAN_00037;E5RK15_HUMAN_00037 3114 DLYRILKAYTIYR wildtype peptide TBC1 domain family member 10B 3115 RQYKNQKESEKDL wildtype peptide G patch domain-containing protein 1 3116 APFGGFKQSGFGK wildtype peptide Cytosolic 10-formyltetrahydrofolate dehydrogenase

3117 LQIGTEKAEKNEG wildtype peptide Zinc finger protein 638 E7EUZ3_HUMAN_00270;F5H6M8_HUMAN_00270;ZN638_HUMAN_01330;ZN638_HUMAN_00427 D3YTF8_HUMAN_00152;D3YTF9_HUMAN_00174;E7ENA2_HUMAN_00145;F5H1L4_HUMAN_001 45;F5H2M2_HUMAN_00175;F5H2V0_HUMAN_00174;E7EWK1_HUMAN_00175;F6WBI2_HUMAN_ 3118 GVAKGGKEILLSA wildtype peptide Thioredoxin reductase 2, mitochondrial 00079;TRXR2_HUMAN_00149;TRXR2_HUMAN_00079 ZIC4_HUMAN_00213;ZIC5_HUMAN_00500;B7Z2L2_HUMAN_00263;ZIC1_HUMAN_00311;C9J1W0 _HUMAN_00063;C9JD04_HUMAN_00213;H7BYQ8_HUMAN_00091;H7BYQ9_HUMAN_00138;ZIC4 3119 PFPGCGKVFARSE wildtype peptide Zinc finger protein ZIC 2 _HUMAN_00213 3120 GFPLMIKASEGGG wildtype peptide Acetyl-CoA carboxylase 2 F8W8T8_HUMAN_00454;ACACB_HUMAN_00454 Acetylome - Acetyltransferase Microarray page 87 of 167

Sequence PEP_FLAG Protein name Uniprot IDs F8W6G0_HUMAN_00826;ACACA_HUMAN_02069;ACACA_HUMAN_02049;ACACA_HUMAN_0216 3121 EGTVEIKFRRKDL wildtype peptide Acetyl-CoA carboxylase 1 4 3122 GFSESEKKSYFSY wildtype peptide NACHT, LRR and PYD domains-containing protein 9 3123 KRLHCRKKPFKCE wildtype peptide Zinc finger protein 223 B5MCW3_HUMAN_00085;F8W820_HUMAN_00044;H7C127_HUMAN_00080;H7C128_HUMAN_00 3124 KRKRGEKGEVVET wildtype peptide Bromodomain-containing protein 8 079;H7C179_HUMAN_00080;BRD8_HUMAN_00085;BRD8_HUMAN_00085 3125 ITPSARKPLCNRC wildtype peptide LOC339047 protein YP009_HUMAN_00766;H0YEP2_HUMAN_00091;H0YFN8_HUMAN_00112 AT2B2_HUMAN_00389;AT2B3_HUMAN_00363;E7EME2_HUMAN_00389;E7ERY9_HUMAN_00108 ;F5H7F7_HUMAN_00324;H0Y7S3_HUMAN_00245;AT2B1_HUMAN_00365;AT2B1_HUMAN_00365; AT2B1_HUMAN_00365;AT2B1_HUMAN_00365;AT2B1_HUMAN_00365;AT2B2_HUMAN_00389;AT 2B2_HUMAN_00375;AT2B2_HUMAN_00344;AT2B2_HUMAN_00375;AT2B2_HUMAN_00344;AT2B 2_HUMAN_00358;AT2B2_HUMAN_00358;AT2B3_HUMAN_00363;AT2B3_HUMAN_00349;AT2B3_ HUMAN_00349;AT2B3_HUMAN_00363;AT2B3_HUMAN_00349;AT2B3_HUMAN_00363;AT2B3_HU 3126 KSVLQGKLTKLAV wildtype peptide Plasma membrane calcium-transporting ATPase 1 MAN_00349 3127 SEEAYEKYIKSIE wildtype peptide Glycine cleavage system H protein, mitochondrial 3128 VTKGDSKNAKKKK wildtype peptide EP300 protein 3129 LGWRDLKGLYEDI wildtype peptide Decaprenyl-diphosphate synthase subunit 1 C9JJ91_HUMAN_00065;DPS1_HUMAN_00104;DPS1_HUMAN_00065 3130 NLRKDQKKTKKRV wildtype peptide Rab11 family-interacting protein 1 3131 HKKKNPKVPINFA wildtype peptide Putative high mobility group protein B3-like protein 3132 KVLDVQKRRVPNK wildtype peptide SH3 and PX domain-containing protein 2B 3133 SGAEKFKLNPDTG wildtype peptide Protocadherin Fat 1 3134 IGKVYKKKITLVN wildtype peptide Uncharacterized protein KIAA1751 3135 RLRKSGKEHIDNI wildtype peptide Muscle-related coiled-coil protein 3136 DWLSSAKIHQKFG wildtype peptide Probable cation-transporting ATPase 13A4 B7WPN9_HUMAN_00161;AT134_HUMAN_00161;AT134_HUMAN_00161 3137 NRDLSVKRESLSH wildtype peptide Structural maintenance of chromosomes protein 1B SMC1B_HUMAN_00252;SMC1B_HUMAN_00252 3138 FAQIDEKTEKAKE wildtype peptide Inner centromere protein Q5SWK9_HUMAN_00226;E9PEX4_HUMAN_00131;F5H2W7_HUMAN_00226;F5H5I1_HUMAN_00 3139 KEVKGGKQEKVKQ wildtype peptide Triadin 226;H0YFU4_HUMAN_00226;H7BY47_HUMAN_00065;H7BYS7_HUMAN_00226 3140 LNQISEKQGRMLL wildtype peptide Centrosome-associated protein 350 Q5T2X4_HUMAN_00574;E7EU22_HUMAN_03110;H0Y7F7_HUMAN_01285 3141 VLDMEGKDEELIK wildtype peptide Filamin A-interacting protein 1-like C9JYJ6_HUMAN_00145;FIL1L_HUMAN_00385;FIL1L_HUMAN_00145;FIL1L_HUMAN_00145 3142 DESAAKKPKWDDF wildtype peptide Pumilio domain-containing protein KIAA0020 3143 YIKAVKKIKCDML wildtype peptide Centrosomal protein of 152 kDa E7ER66_HUMAN_01276;CE152_HUMAN_01183;CE152_HUMAN_01276 B7ZM78_HUMAN_01208;D6W5D1_HUMAN_01154;H0Y470_HUMAN_00254;H0Y7U8_HUMAN_00 190;H7C2C6_HUMAN_00384;GRDN_HUMAN_01209;GRDN_HUMAN_01208;GRDN_HUMAN_0120 3144 NQLLKQKGQLEDL wildtype peptide Girdin 8 3145 QVLFDSKAVQKIE wildtype peptide Folliculin-interacting protein 2 D6RFH5_HUMAN_00090;FNIP2_HUMAN_00090 3146 CVCGALKRARLVH wildtype peptide Polymerase delta-interacting protein 3 B4DMM2_HUMAN_00151;PDIP3_HUMAN_00278 D6RGW0_HUMAN_00135;ERAP2_HUMAN_00135;ERAP2_HUMAN_00135;ERAP2_HUMAN_0013 3147 RYMKPGKELKVLS wildtype peptide Endoplasmic reticulum aminopeptidase 2 5 3148 DESDTNKKLKQTS wildtype peptide UPF0614 protein C14orf102

3149 GIGGLRKRQDTAS wildtype peptide Zinc finger protein neuro-d4 C9JGC1_HUMAN_00126;E9PDV3_HUMAN_00182;DPF1_HUMAN_00208;DPF1_HUMAN_00126 Q59EM5_HUMAN_00231;G5E980_HUMAN_00215;ARRB2_HUMAN_00215;ARRB2_HUMAN_0023 3150 NSTKTVKKIKVSV wildtype peptide Beta-arrestin-2 0 A6NJK7_HUMAN_00139;F5GWN9_HUMAN_00139;F5H101_HUMAN_00139;F5H540_HUMAN_001 39;F5H692_HUMAN_00071;F5H797_HUMAN_00071;F5H8B8_HUMAN_00139;F8WE42_HUMAN_0 3151 TEVPGHKNWVVSK wildtype peptide Nucleolar protein 8 0139;NOL8_HUMAN_00071;NOL8_HUMAN_00013;NOL8_HUMAN_00139 3152 YVFTSEKANQEED wildtype peptide E3 ubiquitin-protein ligase SHPRH 3153 DRAEKLKDYLRSK wildtype peptide Vacuolar protein sorting-associated protein 4A 3154 EGYVEVKEGKTWK wildtype peptide Lysyl oxidase homolog 2 Acetylome - Acetyltransferase Microarray page 88 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3155 GNSHGGKKGNEEK wildtype peptide Epidermal growth factor-like protein 6 3156 DDPAPHKKVGFVG wildtype peptide E3 ubiquitin-protein ligase RNF213 H3BLU6_HUMAN_00950;RN213_HUMAN_02926 3157 IRIEKLKHSYNES wildtype peptide Uncharacterized protein KIAA0753 3158 HFQREEKFWIMET wildtype peptide Zinc finger protein 284 B4DEC3_HUMAN_00270;B4DW08_HUMAN_00260;A2A274_HUMAN_00574;F5H2A5_HUMAN_005 3159 TYQHPPKDSSGQH wildtype peptide Aconitate hydratase, mitochondrial 30 3160 IERMIEKLFPCVI wildtype peptide Protein patched homolog 2 3161 NNRHIVKMLEKYL wildtype peptide A-kinase anchor protein 8 3162 PSAELDKKANLLK wildtype peptide Polyhomeotic-like protein 1 3163 NIFGVIKGFVEPD wildtype peptide Transferrin receptor protein 1 F5H6B1_HUMAN_00112;G3V0E5_HUMAN_00313 3164 SKTLAAKEKEVKK wildtype peptide Structural maintenance of chromosomes protein 2 D3DQ79_HUMAN_00341;E7EUA0_HUMAN_00391;H7BXY5_HUMAN_00305;NEXN_HUMAN_0039 3165 HKLEMEKQEFEQL wildtype peptide Nexilin 1;NEXN_HUMAN_00343;NEXN_HUMAN_00341 3166 ITDGPRKDLVKGK wildtype peptide E3 ubiquitin-protein ligase RNF213 RN213_HUMAN_00569;RN213_HUMAN_00520 B3KUP2_HUMAN_00044;B7Z6U1_HUMAN_00121;C9JGV6_HUMAN_00084;C9JJ34_HUMAN_001 3167 FADECPKPELLAI wildtype peptide Ran-specific GTPase-activating protein 34;C9JXG8_HUMAN_00084;H7C137_HUMAN_00061 3168 AEKLNYKDKKLNI wildtype peptide Protein boule-like F2Z2G3_HUMAN_00099;BOLL_HUMAN_00105;BOLL_HUMAN_00111;BOLL_HUMAN_00105 D3YHP0_HUMAN_00088;B7WPI3_HUMAN_00088;CXAR_HUMAN_00088;CXAR_HUMAN_00088; 3169 DYYPDLKGRVHFT wildtype peptide Coxsackievirus and adenovirus receptor CXAR_HUMAN_00088 3170 FLKMVAKLLESEK wildtype peptide Protein EFR3 homolog B E7ESK9_HUMAN_00070;EFR3B_HUMAN_00105 H0YK72_HUMAN_00110;H0YK83_HUMAN_00110;H0YNG3_HUMAN_00110;H0YNX5_HUMAN_00 3171 KQNGHIKFLTKGD wildtype peptide Signal peptidase complex catalytic subunit SEC11A 084;SC11B_HUMAN_00097 B4DSF6_HUMAN_00025;C9JAV5_HUMAN_00025;C9JUT8_HUMAN_00025;F8WAV4_HUMAN_00 3172 AEEAHLKHEFDAD wildtype peptide Voltage-dependent calcium channel subunit alpha-2/delta-3 025;H7BZW3_HUMAN_00024;CA2D3_HUMAN_00025;CA2D3_HUMAN_00025 A3KN82_HUMAN_01477;E7EWD4_HUMAN_01482;E9PCH4_HUMAN_01519;RPGF6_HUMAN_014 3173 SEGLDPKDATDPV wildtype peptide Rap guanine nucleotide exchange factor 6 82;RPGF6_HUMAN_01477 3174 ETQYESKVFYLKM wildtype peptide 14-3-3 protein gamma 3175 ASGKLGKGFGAFE wildtype peptide Protein AATF 3176 PSDLAKKKAAKKK wildtype peptide ATP-binding cassette sub-family F member 2 C9JZV3_HUMAN_00008;C9JHK9_HUMAN_00008

3177 LFVQTRKGQEVLI wildtype peptide Acyl-CoA dehydrogenase family member 11 D6RDI8_HUMAN_00378;F8WEV0_HUMAN_00378;ACD11_HUMAN_00378;ACD11_HUMAN_00258 3178 PCTTINKVCASGM wildtype peptide Acetyl-CoA acetyltransferase, mitochondrial E9PKF3_HUMAN_00034;G3XAB4_HUMAN_00124;H0YEL7_HUMAN_00060 POTEG_HUMAN_00171;POTEM_HUMAN_00171;A6NKF6_HUMAN_00171;F8W858_HUMAN_001 71;G3V2R0_HUMAN_00171;H0YG78_HUMAN_00152;POTEH_HUMAN_00208;POTEG_HUMAN_0 3179 DMNKKDKQKRTAL wildtype peptide POTE ankyrin domain family member H 0171;POTEG_HUMAN_00171 E7ERU0_HUMAN_04780;E7ERU2_HUMAN_06977;E9PEB9_HUMAN_07155;E9PHM6_HUMAN_04 3180 MKKLEEKRAELNK wildtype peptide Dystonin 889;F8W9J4_HUMAN_06866;DYST_HUMAN_04563 3181 VPQHAGKKGKLSE wildtype peptide Bromodomain-containing protein 3 3182 LGQFSEKELAAEK wildtype peptide Biliverdin reductase A 3183 NMNRDIKMPLRKH wildtype peptide Uncharacterized protein C12orf40 Complement component 1 Q subcomponent-binding protein, 3184 IKNDDGKKALVLD wildtype peptide mitochondrial Q96HY3_HUMAN_00113;E7EMB3_HUMAN_00196;E7ETZ0_HUMAN_00150;H0Y7A7_HUMAN_001 3185 VQMMTAKZZZZZZ wildtype peptide Calmodulin 87 3186 NVRFGTKLGSDIK wildtype peptide 3-ketoacyl-CoA thiolase, mitochondrial C9JWR9_HUMAN_00280;E3W993_HUMAN_00277;E9PER6_HUMAN_00277;H0Y4Z0_HUMAN_00 304;PDPK2_HUMAN_00277;PDPK1_HUMAN_00254;PDPK1_HUMAN_00278;PDPK1_HUMAN_001 3187 EYDFPEKFFPKAR wildtype peptide 3-phosphoinositide-dependent protein kinase 1 77 3188 TKSCEIKFLTFKD wildtype peptide 39S ribosomal protein L39, mitochondrial C9JG87_HUMAN_00126;RM39_HUMAN_00126 3189 ESNLGAKVFFFKA wildtype peptide 39S ribosomal protein L46, mitochondrial Acetylome - Acetyltransferase Microarray page 89 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3190 TRVFVQKEILDKF wildtype peptide 4-trimethylaminobutyraldehyde dehydrogenase 3191 SVPTWLKLTSDDV wildtype peptide 40S ribosomal protein S13 3192 AKEGFEKISKGAN wildtype peptide 60 kDa heat shock protein, mitochondrial B7Z712_HUMAN_00130;E7ESH4_HUMAN_00130;E7EXB4_HUMAN_00130 3193 GEVIVTKDDAMLL wildtype peptide 60 kDa heat shock protein, mitochondrial 3194 IIKRTLKIPAMTI wildtype peptide 60 kDa heat shock protein, mitochondrial 3195 AVIAELKKQSKPV wildtype peptide 60 kDa heat shock protein, mitochondrial E7ESH4_HUMAN_00156;E7EXB4_HUMAN_00156;F5GWR2_HUMAN_00012 Q5LJ98_HUMAN_00224;Q5LJ99_HUMAN_00224;Q5LJA0_HUMAN_00224;H0Y9N5_HUMAN_0018 3196 LSVETEKLLKYLE wildtype peptide 60 kDa SS-A/Ro ribonucleoprotein 7 3197 ISELNGKNIEDVI wildtype peptide 60S acidic ribosomal protein P2 B4E1M5_HUMAN_00121;D6RAN4_HUMAN_00121;E7ESE0_HUMAN_00121;H0Y9V9_HUMAN_00 3198 RNFLGEKYIRRVR wildtype peptide 60S ribosomal protein L9 118 C9J7Q4_HUMAN_00087;H0YC52_HUMAN_00077;H7BYM8_HUMAN_00087;H7BZ58_HUMAN_000 68;H7C396_HUMAN_00037;ABHDB_HUMAN_00087;ABHDB_HUMAN_00087;ABHDB_HUMAN_00 3199 NFNSIAKILAQQT wildtype peptide Abhydrolase domain-containing protein 11 080;ABHDB_HUMAN_00080 3200 EKAGIPKEEVKEA wildtype peptide Acetyl-CoA acetyltransferase, mitochondrial G3XAB4_HUMAN_00083;H0YEL7_HUMAN_00019;E9PRQ6_HUMAN_00083 3201 AAWEAGKFGNEVI wildtype peptide Acetyl-CoA acetyltransferase, mitochondrial 3202 CAENTAKKLNIAR wildtype peptide Acetyl-CoA acetyltransferase, mitochondrial Q6ZV30_HUMAN_00559;E9PC79_HUMAN_00437;F5H6F4_HUMAN_00521;ACS2L_HUMAN_0064 3203 PKTRSGKVMRRLL wildtype peptide Acetyl-coenzyme A synthetase 2-like, mitochondrial 0 C9JZR4_HUMAN_00157;E9PB03_HUMAN_00185;F5GYF6_HUMAN_00156;H0Y6A0_HUMAN_000 3204 KGLGAKKGSLGAQ wildtype peptide ADP-ribosylation factor GTPase-activating protein 3 76 3205 FEVPFLKFZZZZZ wildtype peptide ADP-sugar pyrophosphatase 3206 ALNFAFKDKYKQI wildtype peptide ADP/ATP translocase 2 3207 GIYDTAKGMLPDP wildtype peptide ADP/ATP translocase 2 3208 NFAFKDKYKQIFL wildtype peptide ADP/ATP translocase 2 3209 ALNFAFKDKYKQL wildtype peptide ADP/ATP translocase 1 3210 TEDNLKKLYVSNL wildtype peptide Amidophosphoribosyltransferase E9PNG0_HUMAN_00398;H0Y360_HUMAN_00487;AMPD2_HUMAN_00435;AMPD2_HUMAN_0039 3211 DNRVSGKYFAHII wildtype peptide AMP deaminase 2 7;AMPD2_HUMAN_00441 3212 ICSLEKKSLLRDN wildtype peptide Anaphase-promoting complex subunit 7 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat B4DIW9_HUMAN_00115;C9JBB9_HUMAN_00115;ANR28_HUMAN_00204;ANR28_HUMAN_00017 3213 NINAFDKKDRRAI wildtype peptide subunit A ;ANR28_HUMAN_00201 3214 PAFFAEKLHQAMK wildtype peptide Annexin A1 3215 FKTAYGKDLIKDL wildtype peptide Annexin A11 B4DVE7_HUMAN_00215;E9PDK5_HUMAN_00155 AATM_MOUSE_00339;AATM_PIG_00339;AATM_RAT_00339;AATM_MACFA_00339;AATM_PONA 3216 QWLQEVKGMADRI wildtype peptide Aspartate aminotransferase, mitochondrial B_00339 B9ZVU2_HUMAN_00033;C9JBE1_HUMAN_00041;E7EPX3_HUMAN_00033;E7ETB3_HUMAN_000 41;E7EWP4_HUMAN_00033;F8WAN0_HUMAN_00019;E3W974_HUMAN_00033;E5RJ35_HUMAN 3217 AAKELLKFVNRSP wildtype peptide Aspartyl aminopeptidase _00019 3218 AKYLKRKDIESIR wildtype peptide Aspartate--tRNA ligase, mitochondrial G3XAA0_HUMAN_01561;H0Y7H8_HUMAN_01088;ARI1B_HUMAN_01579;ARI1B_HUMAN_01619 3219 PFLPSMKMQKVMP wildtype peptide AT-rich interactive domain-containing protein 1B ARI1B_HUMAN_00816 B7Z7X8_HUMAN_00296;B5MCN0_HUMAN_00143;C9JQQ5_HUMAN_00132;H7C3A2_HUMAN_00 3220 SFDGRLKDIDEDF wildtype peptide Atlastin-2 233;ATLA2_HUMAN_00314;ATLA2_HUMAN_00143;ATLA2_HUMAN_00296 3221 NKPWEPKWTKICS wildtype peptide ATP synthase protein 8 3222 GIGHRVKSINNPD wildtype peptide ATP-citrate synthase B4E3P0_HUMAN_00707;E7ENH9_HUMAN_01032;ACLY_HUMAN_00968 3223 EASGDYKYSGRDS wildtype peptide X-ray repair cross-complementing protein 6 B1AHC8_HUMAN_00031;B1AHC7_HUMAN_00031 B1AHC8_HUMAN_00427;B1AHC7_HUMAN_00468;B1AHC9_HUMAN_00418;F5H1I8_HUMAN_003 3224 MKAIVEKLRFTYR wildtype peptide X-ray repair cross-complementing protein 6 35 3225 VDEEQMKYKSEGK wildtype peptide X-ray repair cross-complementing protein 5 Acetylome - Acetyltransferase Microarray page 90 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3226 IIHSLKKCDISLQ wildtype peptide X-ray repair cross-complementing protein 5 3227 FMSRLEKAYEARR wildtype peptide ATP-dependent DNA helicase Q1 3228 TKPVLGKDEDFKQ wildtype peptide Bifunctional glutamate/proline--tRNA ligase E7EMN0_HUMAN_00661;F5H7I7_HUMAN_00644 3229 KIWAFNKKVIDPV wildtype peptide Bifunctional glutamate/proline--tRNA ligase E9PBU3_HUMAN_00356;F5GWY2_HUMAN_00298;H7C084_HUMAN_00051;H7C1S2_HUMAN_00 3230 LTILSKKKNGNYC wildtype peptide Bifunctional purine biosynthesis protein PURH 026 3231 SGLNSEKVAALIQ wildtype peptide Bleomycin hydrolase 3232 IYLQLSKKDPIIK wildtype peptide Bloom syndrome protein F5H7R6_HUMAN_00408;H0YNU5_HUMAN_00755 3233 MTQKPHKKPGPGE wildtype peptide Branched-chain-amino-acid aminotransferase, mitochondrial 3234 NMEKTLKGLNSES wildtype peptide Carbamoyl-phosphate synthase [ammonia], mitochondrial H0YGP4_HUMAN_00900;CPSM_HUMAN_00441 3235 AYNTLIKDKVNRD wildtype peptide Carnitine O-acetyltransferase C9JBD1_HUMAN_00268;CACP_HUMAN_00247;CACP_HUMAN_00268 3236 NFKSPVKTIRZZZ wildtype peptide Casein kinase II subunit beta B4DXW4_HUMAN_00388;Q7Z777_HUMAN_00197;E7EWN6_HUMAN_00544;F8W7P6_HUMAN_0 3237 ELNFWAKRAKQRH wildtype peptide Caseinolytic peptidase B protein homolog 0530;H0YGM0_HUMAN_00594;CLPB_HUMAN_00559 B4E2G8_HUMAN_00171;E5RIB1_HUMAN_00186;E5RIC3_HUMAN_00156;E5RJ41_HUMAN_0008 3;F6XBD8_HUMAN_00186;F8W845_HUMAN_00083;G3XAM7_HUMAN_00186;CTNA1_HUMAN_00 3238 LKPEVDKLNIMAA wildtype peptide Catenin alpha-1 186 3239 SSNVSYKYSKVNK wildtype peptide Cation-independent mannose-6-phosphate receptor 3240 NMGYAAKAMKAAH wildtype peptide Charged multivesicular body protein 4b 3241 LNDNLEKGLLKAL wildtype peptide Chloride intracellular channel protein 1 B4E322_HUMAN_00008;C9J050_HUMAN_00008;C9J2E1_HUMAN_00008;C9JEJ2_HUMAN_00008 ;C9JPY0_HUMAN_00008;C9JVS0_HUMAN_00008;D3DXB2_HUMAN_00008;F8WAZ5_HUMAN_00 3242 DAQCSAKVNARKR wildtype peptide Choline-phosphate cytidylyltransferase A 008;F8WBU2_HUMAN_00008

3243 QKNSNSKNDRRNR wildtype peptide Chromatin modification-related protein MEAF6 B1AK63_HUMAN_00052;B1AK64_HUMAN_00074;EAF6_HUMAN_00074;EAF6_HUMAN_00074 3244 KVEYFLKWKGFTD wildtype peptide Chromobox protein homolog 3

3245 GSGTYTKLQNTQV wildtype peptide Chromodomain-helicase-DNA-binding protein 9 H3BSP3_HUMAN_00499;H3BTW3_HUMAN_00025;CHD9_HUMAN_00499;CHD9_HUMAN_00499 3246 KLDEILKEIKSIK wildtype peptide Coronin-1C A7MAP0_HUMAN_00452;B4E3S0_HUMAN_00341;H0YHL7_HUMAN_00137 3247 TLCCYGKQLCTIP wildtype peptide Histone acetyltransferase p300 CBP_HUMAN_01216;Q4LE28_HUMAN_01246 3248 KKKNNKKTNKNKS wildtype peptide CREB-binding protein 3249 HAHKMVKWGLGLD wildtype peptide CREB-binding protein Q4LE28_HUMAN_01774;E9PEX7_HUMAN_00279 H0YMH7_HUMAN_00026;H0YNU2_HUMAN_00026;H0YNW9_HUMAN_00026;CTSL2_HUMAN_00 3250 TARAKRKYSEVDD wildtype peptide CTD small phosphatase-like protein 2 026 3251 APELLAKYCDNLL wildtype peptide Cullin-2 Q5T2B5_HUMAN_00393;Q5T2B7_HUMAN_00336;G3V1S2_HUMAN_00412 3252 KTVTFSKLZZZZZ wildtype peptide Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial 3253 RSSLLEKGLDGAK wildtype peptide Dermcidin 3254 LHQQWDKKNAAKK wildtype peptide DET1- and DDB1-associated protein 1 B9ZVX0_HUMAN_01033;E7ERW8_HUMAN_01000;E7ET75_HUMAN_01049;E9PEZ2_HUMAN_01 048;E9PEZ3_HUMAN_01054;E9PHQ0_HUMAN_01045;H9KV28_HUMAN_01058;DIAP1_HUMAN_0 3255 SAENLQKNLDQMK wildtype peptide Protein diaphanous homolog 1 1033 3256 GIAHLFKQNKVVH wildtype peptide Dihydrolipoyl dehydrogenase, mitochondria B4DHG0_HUMAN_00044;F5H4I0_HUMAN_00093;E9PEX6_HUMAN_00120 B4DHG0_HUMAN_00318;B4DT69_HUMAN_00369;F5H4I0_HUMAN_00367;E9PEX6_HUMAN_003 3257 EEGIEYKVGKFPF wildtype peptide Dihydrolipoyl dehydrogenase, mitochondrial 94 3258 VGPDFGKKRLGLP wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_02701;PRKDC_HUMAN_02702 3259 KMAQELKYGDIVE wildtype peptide DNA-directed RNA polymerase III subunit RPC1 DNJA4_HUMAN_00032;DNJC5_HUMAN_00041;C9JDE6_HUMAN_00032;F5GWV1_HUMAN_0003 2;F5H170_HUMAN_00032;F5H300_HUMAN_00061;F8WF76_HUMAN_00032;DNJA4_HUMAN_000 3260 YRKLALKYHPDKN wildtype peptide DnaJ homolog subfamily A member 1 61;DNJC5_HUMAN_00041 3261 QLKKEGKPTIVEE wildtype peptide DnaJ homolog subfamily C member 8 Acetylome - Acetyltransferase Microarray page 91 of 167

Sequence PEP_FLAG Protein name Uniprot IDs C9IZF9_HUMAN_00048;E9PFU1_HUMAN_00048;F8WBR8_HUMAN_00048;F8WEQ7_HUMAN_00 3262 AAEELSKLRRAAV wildtype peptide Programmed cell death 6-interacting protein 048 B4DDD6_HUMAN_00151;B4DDP6_HUMAN_00127;B4DDU5_HUMAN_00106;B4DEM2_HUMAN_0 0073;C9J7P1_HUMAN_00081;H0Y5J4_HUMAN_00105;DBNL_HUMAN_00176;DBNL_HUMAN_001 3263 EIKRVGKDSFWAK wildtype peptide Drebrin-like protein 76 3264 KAFNQGKIFKZZZ wildtype peptide Elongation factor 1-gamma B4DTG2_HUMAN_00484;B4DUP0_HUMAN_00203 3265 ANGKFSKSATSPE wildtype peptide Elongation factor 2 B4DMC6_HUMAN_00275;F5GZG3_HUMAN_00275;F5H370_HUMAN_00275

3266 FLTFINKLDRMGS wildtype peptide Elongation factor G, mitochondrial C9IZ01_HUMAN_00175;D3DNL3_HUMAN_00175;F8WAU4_HUMAN_00175;EFGM_HUMAN_00175 3267 PARDLEKPFLLPV wildtype peptide Elongation factor Tu, mitochondrial

3268 RAKKANKRGDWRD wildtype peptide Endonuclease 8-like 2 E7EU31_HUMAN_00139;E9PPN4_HUMAN_00154;NEIL2_HUMAN_00138;NEIL2_HUMAN_00093 3269 KIQPVAKYDWEQK wildtype peptide Enhancer of mRNA-decapping protein 4 B4DM67_HUMAN_00475;B4DUC5_HUMAN_00357;E7ENK9_HUMAN_00365;E7EPX1_HUMAN_00 3270 ENEYIMKAIMRSF wildtype peptide Exportin-2 172;F5GX54_HUMAN_00263;F8W904_HUMAN_00518;XPO2_HUMAN_00574 3271 LTPLMEKFKILLE wildtype peptide Exportin-T 3272 KFGDYNKEVHKSG wildtype peptide Ezrin 3273 RNKISFKFDHLRK wildtype peptide F-actin-capping protein subunit alpha-1 B1AK87_HUMAN_00223;B1AK88_HUMAN_00264;E7EQ40_HUMAN_00297;CAPZB_HUMAN_0023 3274 NEIYFGKTKDIVN wildtype peptide F-actin-capping protein subunit beta 5 3275 ILLSADKYEIKIW wildtype peptide F-box/WD repeat-containing protein 2 Q4VXH1_HUMAN_00169;FBXW2_HUMAN_00233 3276 RRLDPNKYPVPEN wildtype peptide Flap endonuclease 1 3277 GKFKRGKZZZZZZ wildtype peptide Flap endonuclease 1 E9PGQ4_HUMAN_00132;F2Z2U3_HUMAN_00053;H0Y7W6_HUMAN_00094;H7BY87_HUMAN_00 3278 HIETCWKQLESSK wildtype peptide Formin-binding protein 1 132;FNBP1_HUMAN_00132;FNBP1_HUMAN_00132;FNBP1_HUMAN_00132 H3BMQ8_HUMAN_00097;H3BPS8_HUMAN_00162;H3BQN4_HUMAN_00108;H3BR04_HUMAN_00 3279 GGVVGIKVDKGVV wildtype peptide Fructose-bisphosphate aldolase A 097;H3BUH7_HUMAN_00108 3280 LKVPNDKYYGAQT wildtype peptide Fumarate hydratase, mitochondrial 3281 GYVQQVKYAMTRI wildtype peptide Fumarate hydratase, mitochondrial 3282 IPELNGKLTGMAF wildtype peptide Glyceraldehyde-3-phosphate dehydrogenase E7EPW1_HUMAN_00053;E7EUT4_HUMAN_00185;E7EUT5_HUMAN_00152 3283 RLEKPAKYDDIKK wildtype peptide Glyceraldehyde-3-phosphate dehydrogenase E7EPW1_HUMAN_00080;E7EUT4_HUMAN_00212;E7EUT5_HUMAN_00179 3284 RRFKSSKFGCRDP wildtype peptide Glycogen phosphorylase, brain form PYGM_HUMAN_00316;F5GZH7_HUMAN_00297;PYGM_HUMAN_00228 3285 SDEWFAKHNKPKA wildtype peptide Glyoxalase domain-containing protein 4 B7Z403_HUMAN_00281;E7EMY5_HUMAN_00493;GLOD4_HUMAN_00290 3286 LCNGDSKLENAGG wildtype peptide GMP synthase [glutamine-hydrolyzing] 3287 HEFHKTKANFMAI wildtype peptide Golgi SNAP receptor complex member 1 B4DQA8_HUMAN_00124;E9PCW1_HUMAN_00124;G5E9T8_HUMAN_00061 HS90B_HUMAN_00284;HS902_HUMAN_00291;H90B2_HUMAN_00206;Q86U12_HUMAN_00113;H 3288 DQEELNKTKPIWT wildtype peptide Heat shock protein HSP 90-alpha S90A_HUMAN_00414 E9PHH7_HUMAN_00119;E9PHI1_HUMAN_00119;E9PHI2_HUMAN_00119;H0Y598_HUMAN_0010 3289 RMKETQKSIYYIT wildtype peptide Heat shock protein HSP 90-beta 7;H0Y5S7_HUMAN_00107;H0Y6E4_HUMAN_00107 3290 TTTTTFKGVDPNS wildtype peptide Hematological and neurological expressed 1 protein B8ZZT7_HUMAN_00008;F2Z3M5_HUMAN_00008;HN1_HUMAN_00008 3291 SQRDYAKGFGGQY wildtype peptide Hematopoietic lineage cell-specific protein 3292 ANALAHKYHZZZZ wildtype peptide Hemoglobin subunit delta 3293 VKPPPNKYPIFFF wildtype peptide Hepatoma-derived growth factor-related protein 2 C9JEE1_HUMAN_00039;E9PGW4_HUMAN_00025;HDGR2_HUMAN_00039 HMGB2_HUMAN_00044;D6R9A6_HUMAN_00044;E7EQU1_HUMAN_00044;E7ES08_HUMAN_000 3294 FAEFSKKCSERWK wildtype peptide High mobility group protein B3 44;E9PES6_HUMAN_00044;HMG3M_HUMAN_00044 3295 SQPLASKQEKDGT wildtype peptide High mobility group protein HMG-I/HMG-Y H7BYM6_HUMAN_00015;HMGA1_HUMAN_00015;HMGA1_HUMAN_00015 D6RC06_HUMAN_00030;D6RD60_HUMAN_00030;D6RE99_HUMAN_00030;D6REP8_HUMAN_00 3296 RKEIPAKIIFEDD wildtype peptide Histidine triad nucleotide-binding protein 1 030 3297 LGHLTGKHERHFS wildtype peptide Histone acetyltransferase KAT7 E7EUP3_HUMAN_00043;G3V125_HUMAN_00043;G5E9K7_HUMAN_00199 3298 LEISVGKSVSHEN wildtype peptide Histone acetyltransferase KAT6A Acetylome - Acetyltransferase Microarray page 92 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3299 SRQSPAKVQSKNK wildtype peptide Histone acetyltransferase KAT6B KAT6B_HUMAN_00855;KAT6B_HUMAN_00746 3300 PKKGSKKAITKAQ wildtype peptide Histone H2B type 1-B 3301 YIYKVLKQVHPDT wildtype peptide Histone H2B type 1-A

H2B1J_HUMAN_00016;H2B1O_HUMAN_00016;H2BFS_HUMAN_00016;H2B1D_HUMAN_00016;H 2B1C_HUMAN_00016;H2B2E_HUMAN_00016;H2B3B_HUMAN_00016;H2B1H_HUMAN_00016;H2 3302 APKKGSKKAVTKA wildtype peptide Histone H2B type 1-K B1N_HUMAN_00016;H2B1L_HUMAN_00016;H2B2C_HUMAN_00016;H2B2D_HUMAN_00016 3303 ZMPEPTKSAPAPK wildtype peptide Histone H2B type 1-D

H2B1J_HUMAN_00117;H2B1O_HUMAN_00117;H2B1B_HUMAN_00117;H2BFS_HUMAN_00117;H 2B1D_HUMAN_00117;H2B1C_HUMAN_00117;H2B2E_HUMAN_00117;H2B2F_HUMAN_00117;H2 B3B_HUMAN_00117;H2B1H_HUMAN_00117;H2B1A_HUMAN_00118;H2B1N_HUMAN_00117;H2B 3304 AVSEGTKAVTKYT wildtype peptide Histone H2B type 1-K 1M_HUMAN_00117;H2B1L_HUMAN_00117;B4DR52_HUMAN_00117;H2B2F_HUMAN_00117 3305 SAPVPKKGSKKAI wildtype peptide Histone H2B type 1-M 3306 NPVPVMKLVEVIK wildtype peptide Hydroxyacyl-coenzyme A dehydrogenase, mitochondria E9PF18_HUMAN_00183;HCDH_HUMAN_00238 3307 TGEGFYKYKZZZZ wildtype peptide Hydroxyacyl-coenzyme A dehydrogenase, mitochondria E9PF18_HUMAN_00316;HCDH_HUMAN_00388 3308 DGVDAGKYTIGLG wildtype peptide Hydroxymethylglutaryl-CoA synthase, cytoplasmic Q8N995_HUMAN_00046;D6RIW1_HUMAN_00046 3309 SELFSQKTKASLL wildtype peptide Hydroxymethylglutaryl-CoA synthase, cytoplasmic 3310 TKANFDKESERHF wildtype peptide Importin subunit beta-1 B7ZAV6_HUMAN_00066;F5H4R7_HUMAN_00066 3311 NDFQLGKEFSMAR wildtype peptide Inhibitor of growth protein 3 3312 KARSFAKAAIEKQ wildtype peptide Isoleucine--tRNA ligase, mitochondrial 3313 KQYDFGKVVRLLR wildtype peptide Isoleucine--tRNA ligase, mitochondrial 3314 DRSNEFKNLREFW wildtype peptide Isovaleryl-CoA dehydrogenase, mitochondria 3315 LASYLDKVRALEA wildtype peptide Keratin, type I cytoskeletal 19 3316 SETNDTKVLRHZZ wildtype peptide Keratin, type I cytoskeletal 18 3317 LQAQAGKHGDDLR wildtype peptide Keratin, type II cytoskeletal 7 E7ES34_HUMAN_00272;F8VZY5_HUMAN_00296 3318 PLKGRAKTPVTLK wildtype peptide Lamina-associated polypeptide 2, isoforms beta/gamma G5E972_HUMAN_00207;H0YJH7_HUMAN_00114;LAP2B_HUMAN_00207 C9J1F6_HUMAN_00029;C9J6L0_HUMAN_00029;C9J8K3_HUMAN_00029;C9J9U2_HUMAN_0002 9;C9JAP8_HUMAN_00029;C9JAS0_HUMAN_00029;C9JB33_HUMAN_00029;C9JD87_HUMAN_00 029;C9JI26_HUMAN_00029;C9JI89_HUMAN_00029;C9JI93_HUMAN_00029;C9JM53_HUMAN_000 29;C9JTL3_HUMAN_00029;C9JTM3_HUMAN_00029;C9JXZ3_HUMAN_00029;E7EMA1_HUMAN_0 0029;F8WFD4_HUMAN_00029;PRC2A_HUMAN_00029;PRC2A_HUMAN_00029;PRC2A_HUMAN_ 3319 FDTYKGKSLEIQK wildtype peptide Protein PRRC2A 00029 3320 QLHMAEKELEKKF wildtype peptide Leucine zipper transcription factor-like protein 1 B3KSI9_HUMAN_00242;H7C488_HUMAN_00195 3321 VKQTLEKVEKSEL wildtype peptide Leucine-rich PPR motif-containing protein, mitochondrial B8ZZ38_HUMAN_00292;C9JCA9_HUMAN_00266;F5H4J6_HUMAN_00192 3322 IHDVLCKLVEKGE wildtype peptide Leucine-rich PPR motif-containing protein, mitochondrial

3323 INGQEVKYALGER wildtype peptide Leukotriene A-4 hydrolase B4DEH5_HUMAN_00073;F8VV40_HUMAN_00049;LKHA4_HUMAN_00073;LKHA4_HUMAN_00049 3324 ESEKLSKMSSLLE wildtype peptide Mediator of RNA polymerase II transcription subunit 1 3325 LTAVIDKLKHGVV wildtype peptide Mediator of RNA polymerase II transcription subunit 1 3326 AKGPPEKRMRLQZ wildtype peptide Mediator of RNA polymerase II transcription subunit 6 B4DU17_HUMAN_00248;G3V4A5_HUMAN_00241 3327 AQGCICKGASDKC wildtype peptide Metallothionein-2 B4DI41_HUMAN_00473;MBD1_HUMAN_00399;MBD1_HUMAN_00366;MBD1_HUMAN_00373;MB 3328 HLGPTLKPTLATR wildtype peptide Methyl-CpG-binding domain protein 1 D1_HUMAN_00422;MBD1_HUMAN_00366;MBD1_HUMAN_00399;MBD1_HUMAN_00447 3329 ZZZMERKSPSGKK wildtype peptide Isoform 2 of Methyl-CpG-binding domain protein 3 3330 DLTWYAKGRAPCA wildtype peptide Multiple myeloma tumor-associated protein 2 MMTA2_HUMAN_00053;MMTA2_HUMAN_00053;MMTA2_HUMAN_00053 3331 DQEALMKSVKLLQ wildtype peptide Myb-binding protein 1A E7EN09_HUMAN_00158;MBB1A_HUMAN_00158 3332 GTGPPIKAEPKAP wildtype peptide Myelin gene regulatory factor 3333 TTWEKGKGSEVSV wildtype peptide Histone-lysine N-methyltransferase MLL2 Acetylome - Acetyltransferase Microarray page 93 of 167

Sequence PEP_FLAG Protein name Uniprot IDs MEF2C_HUMAN_00007;C9JMZ0_HUMAN_00007;D6R942_HUMAN_00007;D6R9J8_HUMAN_0000 7;D6RAH2_HUMAN_00007;D6RB91_HUMAN_00007;D6RC63_HUMAN_00007;D6RCM6_HUMAN_ 00007;D6RG14_HUMAN_00007;D6RG21_HUMAN_00007;D6RJ95_HUMAN_00007;D6RJA7_HUM AN_00007;D6RJG6_HUMAN_00007;F8W7V7_HUMAN_00007;F8W966_HUMAN_00007;H0YKY6_ HUMAN_00007;H0YM62_HUMAN_00007;H0YNI2_HUMAN_00007;F6XG23_HUMAN_00007;MEF2A _HUMAN_00007;MEF2A_HUMAN_00007;MEF2A_HUMAN_00007;MEF2A_HUMAN_00007;MEF2A _HUMAN_00007;MEF2A_HUMAN_00007;MEF2C_HUMAN_00007;MEF2C_HUMAN_00007;MEF2C 3334 ZZZMGRKKIQITR wildtype peptide Myocyte-specific enhancer factor 2A _HUMAN_00007 F8W966_HUMAN_00252;F6XG23_HUMAN_00184;MEF2A_HUMAN_00252;MEF2A_HUMAN_0025 4;MEF2A_HUMAN_00252;MEF2A_HUMAN_00254;MEF2A_HUMAN_00252;MEF2A_HUMAN_0018 3335 GKVMPTKSPPPPG wildtype peptide Myocyte-specific enhancer factor 2A 4

3336 EKLAMVKAEPDVK wildtype peptide NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 Q5H9R2_HUMAN_00060;C9IZN5_HUMAN_00070;H7BYD0_HUMAN_00056

3337 PLETIQKKLAAKG wildtype peptide NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 B4DE93_HUMAN_00274;E7ETQ4_HUMAN_00246;G3V0I5_HUMAN_00368;NDUV1_HUMAN_0036 3338 RLIEFYKHESCGQ wildtype peptide NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial 6 B4DJ81_HUMAN_00351;E7ENF3_HUMAN_00431;NDUS1_HUMAN_00481;NDUS1_HUMAN_0035 3339 PFSQVLKEAKKPM wildtype peptide NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial 6;NDUS1_HUMAN_00410 3340 IQERNEKLFYRIL wildtype peptide NAD-dependent malic enzyme, mitochondrial A6NCK0_HUMAN_00007;H3BM81_HUMAN_00007;H3BMN8_HUMAN_00007;H3BMR3_HUMAN_0 0007;H3BQ16_HUMAN_00007;H3BQW6_HUMAN_00007;H3BRF8_HUMAN_00007;H3BS69_HUM 3341 ZMAQLGKLLKEQK wildtype peptide NEDD8-activating enzyme E1 regulatory subunit AN_00007;H3BSD7_HUMAN_00007;H3BSS8_HUMAN_00007 3342 DSKGQTKLLQLLT wildtype peptide Nuclear receptor coactivator 2 C9JCR8_HUMAN_00697;NCOA3_HUMAN_00687;NCOA3_HUMAN_00697;NCOA3_HUMAN_0069 3343 KHRILHKLLQNGN wildtype peptide Nuclear receptor coactivator 3 7;NCOA3_HUMAN_00687 NCOR2_HUMAN_00959;C9J0Q5_HUMAN_00941;C9J239_HUMAN_00942;C9J7T7_HUMAN_0051 2;C9JE98_HUMAN_00941;C9JFD3_HUMAN_00959;C9JJF6_HUMAN_00958;NCOR2_HUMAN_009 3344 ANASPQKPLDLKQ wildtype peptide Nuclear receptor corepressor 2 (Fragment) 59;NCOR2_HUMAN_00942;NCOR2_HUMAN_00942 C9J0Q5_HUMAN_01949;C9J239_HUMAN_01950;C9J7T7_HUMAN_01520;C9JE98_HUMAN_0194 9;C9JFD3_HUMAN_01959;C9JJF6_HUMAN_01958;H0Y5V2_HUMAN_00051;NCOR2_HUMAN_002 3345 GHAFLAKPPARSG wildtype peptide Nuclear receptor corepressor 2 60;NCOR2_HUMAN_01962;NCOR2_HUMAN_01953;NCOR2_HUMAN_01953 3346 IMNLNVKKEALLA wildtype peptide Nuclear receptor-interacting protein 1 3347 PIDLSCKHRTEKS wildtype peptide Nuclear receptor-interacting protein 1 3348 ALPKIIKAGFAAL wildtype peptide Obg-like ATPase 1 3349 TRIAASKTIDIRE wildtype peptide Origin recognition complex subunit 1 3350 KWTNYIKGYQRRW wildtype peptide Oxysterol-binding protein 1 3351 NEKYYLKSLDHQG wildtype peptide Paired amphipathic helix protein Sin3a 3352 ZZZMSEKSVEAAA wildtype peptide Parathymosin F5GXR3_HUMAN_00007;F5H7R9_HUMAN_00007 Q5VWU8_HUMAN_00972;Q5VWV2_HUMAN_00945;F5GZI3_HUMAN_00718;F5H5T0_HUMAN_00 989;PARD3_HUMAN_00971;PARD3_HUMAN_01002;PARD3_HUMAN_00915;PARD3_HUMAN_01 005;PARD3_HUMAN_00930;PARD3_HUMAN_00959;PARD3_HUMAN_00959;PARD3_HUMAN_01 3353 KKKDRDKEKDKMK wildtype peptide Partitioning defective 3 homolog 002;PARD3_HUMAN_00959 3354 AAPKMYKEEGLKA wildtype peptide Phosphate carrier protein, mitochondrial F8VVM2_HUMAN_00208;MPCP_HUMAN_00208 3355 IRRVADKYLSGLV wildtype peptide Phosphatidylinositol 4-kinase alpha Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual- 3356 ZMTAIIKEIVSRN wildtype peptide specificity protein phosphatase PTEN B4DGX2_HUMAN_00032;Q5JUT2_HUMAN_00043;Q5JUT3_HUMAN_00043;E9PCB2_HUMAN_00 3357 PSHFKFKEYCPMV wildtype peptide Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha 050 3358 VVGPYVKKILCEE wildtype peptide Phosphoglucomutase-1 B4DPV0_HUMAN_00037;F5H857_HUMAN_00210;PGM1_HUMAN_00252 3359 DFNVPMKNNQITN wildtype peptide Phosphoglycerate kinase 1 Acetylome - Acetyltransferase Microarray page 94 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3360 RFAQEYKKDPDRG wildtype peptide Poly(ADP-ribose) glycohydrolase ARH3 E7EQV3_HUMAN_00467;E7ERJ7_HUMAN_00480;H0YAS6_HUMAN_00045;H0YAS7_HUMAN_00 3361 RTVPQYKYAAGVR wildtype peptide Polyadenylate-binding protein 1 021;H0YAW6_HUMAN_00165;H0YB75_HUMAN_00059 PABP4_HUMAN_00108;B1ANR0_HUMAN_00108;B1ANR1_HUMAN_00108;E5RGH3_HUMAN_000 63;E5RH24_HUMAN_00108;E5RJB9_HUMAN_00108;E7EQV3_HUMAN_00063;H0Y5F5_HUMAN_ 00010;H0YEQ8_HUMAN_00052;PABP1_HUMAN_00108;PABP4_HUMAN_00108;PABP4_HUMAN_ 3362 FIKNLDKSIDNKA wildtype peptide Polyadenylate-binding protein 1 00108 3363 PSPEIVKYTHKLA wildtype peptide Polyribonucleotide nucleotidyltransferase 1, mitochondria 3364 ANSSVGKWQDRYG wildtype peptide Pre-mRNA 3-end-processing factor FIP1 G3XAD6_HUMAN_00279;FIP1_HUMAN_00279 3365 QILATLKGHTKKV wildtype peptide Pre-mRNA-processing factor 19 B4DDC6_HUMAN_00033;B4DHP2_HUMAN_00033;B4DP11_HUMAN_00033;B4DP21_HUMAN_00 3366 VNVNFEKSKLTFS wildtype peptide Prostaglandin E synthase 3 033 3367 SLKGLVKNIPQST wildtype peptide Proteasome assembly chaperone 1 H7C4C0_HUMAN_00121;PSMG1_HUMAN_00243 3368 GYNIPLKHLADRV wildtype peptide Proteasome subunit alpha type-3 G3V4X5_HUMAN_00035;PSA3_HUMAN_00110 H0YKT8_HUMAN_00103;H0YL69_HUMAN_00127;H0YLC2_HUMAN_00127;H0YMA1_HUMAN_001 27;H0YMI6_HUMAN_00101;H0YMZ1_HUMAN_00127;H0YKS0_HUMAN_00039;H0YMV3_HUMAN_ 3369 YTQFGGKRPFGVS wildtype peptide Proteasome subunit alpha type-4 00039;H0YN18_HUMAN_00096;PSA4_HUMAN_00056 B4DQR4_HUMAN_00023;B4DXJ9_HUMAN_00083;G3V295_HUMAN_00102;G3V3I1_HUMAN_001 3370 YEAANWKYKYGYE wildtype peptide Proteasome subunit alpha type-6 02;G3V5Z7_HUMAN_00102 3371 RAMRLVKDVFISA wildtype peptide Proteasome subunit beta type-1 3372 IKNAGGKVTMDGR wildtype peptide Protein phosphatase 1G Q59GB2_HUMAN_00184;F5H7G7_HUMAN_00366 3373 MVPRLVKLFDFPG wildtype peptide Protein RCC2 3374 STKELIKSINEKF wildtype peptide Protein Red 3375 DKGYLTKEDLRVL wildtype peptide Protein S100-A10 3376 ZZZZMAKISSPTE wildtype peptide Protein S100-A11 3377 FHKYSGKEGDKFK wildtype peptide Protein S100-A4 3378 LRSILVKDTQAMK wildtype peptide Pyruvate carboxylase, mitochondrial Pyruvate dehydrogenase E1 component subunit alpha, somatic 3379 ASVEELKEIDVEV wildtype peptide form, mitochondrial Q5JPU3_HUMAN_00055;ODPA_HUMAN_00343;ODPA_HUMAN_00305;ODPA_HUMAN_00374 E7EUQ8_HUMAN_00089;H3BQ34_HUMAN_00089;H3BT25_HUMAN_00089;H3BTJ2_HUMAN_000 89;H3BTN5_HUMAN_00089;H3BUW1_HUMAN_00089;KPYM_HUMAN_00089;KPYM_HUMAN_000 3380 YHAETIKNVRTAT wildtype peptide Pyruvate kinase isozymes M1/M2 74 E7EUQ8_HUMAN_00115;H3BQ34_HUMAN_00135;H3BT25_HUMAN_00135;H3BTJ2_HUMAN_001 35;H3BTN5_HUMAN_00135;H3BUW1_HUMAN_00135;KPYM_HUMAN_00135;KPYM_HUMAN_001 3381 TAEVELKKGATLK wildtype peptide Pyruvate kinase isozymes M1/M2 20 GDIB_HUMAN_00112;B4DHX4_HUMAN_00112;Q5SX86_HUMAN_00076;Q5SX87_HUMAN_00102 3382 EGSFVYKGGKIYK wildtype peptide Rab GDP dissociation inhibitor alpha Q5SX90_HUMAN_00116;E7EU23_HUMAN_00116;G5E9U5_HUMAN_00112 B4DZM7_HUMAN_00184;E7ERJ8_HUMAN_00210;E9PFK9_HUMAN_00183;H7BYE7_HUMAN_002 3383 LEGMHYKRDLSIE wildtype peptide Rab5 GDP/GTP exchange factor 15;RABX5_HUMAN_00170;RABX5_HUMAN_00210 3384 KGVKIDKTDYMVG wildtype peptide Rho GDP-dissociation inhibitor 1 F5H2R5_HUMAN_00040;F5H3P3_HUMAN_00040;F5H6Q0_HUMAN_00040;H0YGX7_HUMAN_000 3385 ELQEMDKDDESLI wildtype peptide Rho GDP-dissociation inhibitor 2 35 3386 RGTYHNKSFFTDD wildtype peptide Rho GDP-dissociation inhibitor 2 3387 IPRQVLKYDDFLK wildtype peptide Rho GTPase-activating protein 1 E9PCG8_HUMAN_00212;H0YE29_HUMAN_00166 3388 SRRDLEKLVRRLL wildtype peptide Rho guanine nucleotide exchange factor 6 B7Z3C7_HUMAN_00624;F5H8B2_HUMAN_00597;ARHG6_HUMAN_00597 3389 MCEMEKKLKEERE wildtype peptide Rho-associated protein kinase 1 B7Z9F1_HUMAN_00082;G3V241_HUMAN_00082;G3V2E4_HUMAN_00103;G3V2W0_HUMAN_000 82;G3V3Y8_HUMAN_00082;G3V4T0_HUMAN_00082;G3V4W5_HUMAN_00103;G3V4X0_HUMAN_ 3390 SEGYPGKRYYGGA wildtype peptide Serine hydroxymethyltransferase, mitochondrial 00082;G3V540_HUMAN_00082;G3V5L0_HUMAN_00082;GLYM_HUMAN_00103 Acetylome - Acetyltransferase Microarray page 95 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B4DLV4_HUMAN_00201;B7Z9F1_HUMAN_00276;G3V2Y4_HUMAN_00136;H0YIZ0_HUMAN_0009 3391 FYRKGVKAVDPKT wildtype peptide Serine hydroxymethyltransferase, mitochondrial 7;GLYM_HUMAN_00287 3392 FKSFLLKDSETSQ wildtype peptide Serine hydroxymethyltransferase, mitochondria B4DLV4_HUMAN_00378;B7Z9F1_HUMAN_00453;GLYM_HUMAN_00464 3393 PAPEPPKPYSLVR wildtype peptide Serine/arginine repetitive matrix protein 2 Q9UQ39_HUMAN_00134;SRRM2_HUMAN_00169;SRRM2_HUMAN_00073

PAK1_HUMAN_00256;B3KNX7_HUMAN_00256;C9J2R9_HUMAN_00170;E9PM17_HUMAN_00158 3394 DEEILEKLRSIVS wildtype peptide Serine/threonine-protein kinase PAK 3 ;PAK3_HUMAN_00254;PAK3_HUMAN_00290;PAK3_HUMAN_00275;PAK1_HUMAN_00256 PAK2_HUMAN_00501;C9J2R9_HUMAN_00436;PAK3_HUMAN_00520;PAK3_HUMAN_00556;PAK 3395 LQHPFLKLAKPLS wildtype peptide Serine/threonine-protein kinase PAK 3 3_HUMAN_00541 3396 PRFKINKKIPRGP wildtype peptide SNW domain-containing protein 1 E9PGQ7_HUMAN_00216;G3V3A4_HUMAN_00216;G3V4X8_HUMAN_00054 3397 DKIQQAKNEIREW wildtype peptide Sorting nexin-2 B4DGT1_HUMAN_00592;A6NG51_HUMAN_00592;F8W7K3_HUMAN_00592;SPTA2_HUMAN_005 3398 KSWVNEKMKTATD wildtype peptide Spectrin alpha chain, brain 92;SPTA2_HUMAN_00592 A6NG51_HUMAN_01519;F8W7K3_HUMAN_01499;SPTA2_HUMAN_01519;SPTA2_HUMAN_0149 3399 AAGHYAKGDISSR wildtype peptide Spectrin alpha chain, brain 9 B4DGT1_HUMAN_01023;A6NG51_HUMAN_01023;F8W7K3_HUMAN_01023;SPTA2_HUMAN_010 3400 PAAYVKKLDPAQS wildtype peptide Spectrin alpha chain, brain 23;SPTA2_HUMAN_01023

3401 LVDTGDKFRFFSM wildtype peptide Spectrin beta chain, brain 1 B2ZZ89_HUMAN_01913;D6W5C0_HUMAN_01827;SPTB2_HUMAN_01913;SPTB2_HUMAN_01900 3402 DDPEVQKDIKNVP wildtype peptide Stress-70 protein, mitochondrial B7Z4V2_HUMAN_00121;D6RJI2_HUMAN_00066 3403 LLRHIVKEFKRET wildtype peptide Stress-70 protein, mitochondrial B7Z4V2_HUMAN_00274;F5H3L8_HUMAN_00241 3404 LQQASLKLFEMAY wildtype peptide Stress-70 protein, mitochondrial B7Z4V2_HUMAN_00632;F5H3L8_HUMAN_00599 3405 HEDRHIKFYDNNT wildtype peptide Striatin Q3B874_HUMAN_00664;STRN_HUMAN_00640 3406 NQKRIEKLEEYIT wildtype peptide Structural maintenance of chromosomes protein 1A 3407 VIGGRNKYLINGV wildtype peptide Structural maintenance of chromosomes protein 2 F5GZR0_HUMAN_00114;SMC2_HUMAN_00114 3408 HKDHFTKLAVEAV wildtype peptide T-complex protein 1 subunit beta F5GWF6_HUMAN_00181;F8VQ14_HUMAN_00181;TCPB_HUMAN_00134 3409 ALHFLNKMKIMVI wildtype peptide T-complex protein 1 subunit delta B7Z2F4_HUMAN_00169;B7Z9L0_HUMAN_00263;F5H5W3_HUMAN_00289 B4DYD8_HUMAN_00139;B7ZAR1_HUMAN_00194;E7EWW2_HUMAN_00205;E9PCA1_HUMAN_0 3410 KGVIVDKDFSHPQ wildtype peptide T-complex protein 1 subunit epsilon 0211;E7ENZ3_HUMAN_00177 B4DUR8_HUMAN_00177;Q5SZX6_HUMAN_00246;E9PAQ6_HUMAN_00221;E9PRC8_HUMAN_00 3411 RGVMINKDVTHPR wildtype peptide T-complex protein 1 subunit gamma 221;TCPG_HUMAN_00184 B4DEM7_HUMAN_00299;B4DQH4_HUMAN_00245;G5E9B2_HUMAN_00317;H7C4C8_HUMAN_00 3412 LVRLNSKWDLRRL wildtype peptide T-complex protein 1 subunit theta 264 3413 VKTLNPKAEVARA wildtype peptide T-complex protein 1 subunit zeta 3414 LYHEADKTYMLRE wildtype peptide TIP41-like protein 3415 CIKDYMKSIKGKL wildtype peptide TPT1-like protein 3416 GVKSVTKIYNYYK wildtype peptide Transaldolase 3417 DGPSTEKDLDEKK wildtype peptide Transcription elongation factor A protein 1 E5RIS7_HUMAN_00084;TCEA1_HUMAN_00063 3418 AAIDWGKMAEQWL wildtype peptide Transcription elongation factor SPT6 SPT6H_HUMAN_00495;SPT6H_HUMAN_00676 3419 EEIVQLKQRRRTL wildtype peptide Transcription factor MafG 3420 YFSPVDKMQLLEI wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 3421 DLYGAQKIVDRLK wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial B4E2W0_HUMAN_00050;B5MD38_HUMAN_00072;C9JE81_HUMAN_00072;D6W539_HUMAN_00 3422 LSGTSYKDLMPHD wildtype peptide Trifunctional enzyme subunit beta, mitochondrial 073;C9JEY0_HUMAN_00072;C9K0M0_HUMAN_00072 3423 LDLNKAKSMGQRL wildtype peptide Trifunctional enzyme subunit beta, mitochondrial B4E2W0_HUMAN_00168;D6W539_HUMAN_00191;F5GZQ3_HUMAN_00175 TMLH_HUMAN_00236;TMLH_HUMAN_00236;TMLH_HUMAN_00236;TMLH_HUMAN_00236;TMLH 3424 GDTAYTKLALDRH wildtype peptide Trimethyllysine dioxygenase, mitochondrial _HUMAN_00177;TMLH_HUMAN_00168;TMLH_HUMAN_00247 3425 VGGASLKPEFVDI wildtype peptide Triosephosphate isomerase B7Z5D8_HUMAN_00156;TPIS_HUMAN_00238 3426 DTRLWAKNSEGSL wildtype peptide Ubiquitin carboxyl-terminal hydrolase 11 3427 DMEIIAKEEQRKA wildtype peptide Ubiquitin carboxyl-terminal hydrolase 22 Acetylome - Acetyltransferase Microarray page 96 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B7Z7T5_HUMAN_00496;B7Z815_HUMAN_00579;F5H8E5_HUMAN_00496;H3BND8_HUMAN_004 3428 VKYTVFKVLKNSS wildtype peptide Ubiquitin carboxyl-terminal hydrolase 7 96 3429 GDSGSGKPFKIKG wildtype peptide Ubiquitin carboxyl-terminal hydrolase 8 3430 KIYQMLKNLLQLS wildtype peptide Ubiquitin conjugation factor E4 A 3431 AREWTQKYAMZZZ wildtype peptide Ubiquitin-conjugating enzyme E2 D1 UB2D2_HUMAN_00144;UB2D4_HUMAN_00144;Q96RP6_HUMAN_00115 3432 KLNEKEKELCQMV wildtype peptide Transcriptional adapter 2-alpha 3433 AVCDASKVVTVFS wildtype peptide WD repeat-containing protein 1 B4DY05_HUMAN_00346;A8MVA9_HUMAN_00512;WDR1_HUMAN_00371 3434 MMQPFNKPSGTFI wildtype peptide DBIRD complex subunit ZNF326 3435 ISKKAIKLRPIAV wildtype peptide tRNA-splicing ligase RtcB homolog 3436 RCKSGNKFFSMPL wildtype peptide UPF0406 protein C16orf57 F5GYK8_HUMAN_00206;H3BNM8_HUMAN_00207;CP057_HUMAN_00240 3437 VPLHYLKPNSFVK wildtype peptide Mini-chromosome maintenance complex-binding protein E5RFP6_HUMAN_00064;E5RHE1_HUMAN_00063;E5RHZ6_HUMAN_00063;E5RJN6_HUMAN_00 3438 NLETKYKVCNYGL wildtype peptide Voltage-dependent anion-selective channel protein 3 063;E5RK27_HUMAN_00031;F5H740_HUMAN_00064;VDAC3_HUMAN_00064 B0AZR7_HUMAN_00057;Q5TG80_HUMAN_00110;Q5TG81_HUMAN_00124;KCAB2_HUMAN_001 3439 KIFWGGKAETERG wildtype peptide Voltage-gated potassium channel subunit beta-2 10;KCAB2_HUMAN_00157 3440 KGYQWLKDKILSE wildtype peptide Voltage-gated potassium channel subunit beta-2 B0AZR7_HUMAN_00207;KCAB2_HUMAN_00260;KCAB2_HUMAN_00322 3441 QLTFDGKRMRKAV wildtype peptide pre-mRNA 3 end processing protein WDR33 B9A053_HUMAN_00046;WDR33_HUMAN_00046;WDR33_HUMAN_00046 C9JQ19_HUMAN_00023;WDR48_HUMAN_00023;WDR48_HUMAN_00572;WDR48_HUMAN_0049 3442 SGAKTLKKDRLSA wildtype peptide WD repeat-containing protein 48 9;WDR48_HUMAN_00306 3443 TLVTASKDGYFKV wildtype peptide WD repeat-containing protein 75 3444 ERTAFIKDQSALZ wildtype peptide Furin B4DHM5_HUMAN_00045;B4E1H9_HUMAN_00130;B7Z7A9_HUMAN_00192;E7ERH5_HUMAN_00 3445 GAKVADKIQLINN wildtype peptide Phosphoglycerate kinase 1 084 Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing 3446 LDIDVEKLTQAEL wildtype peptide subunit alpha B4E2G4_HUMAN_00094;E9PPP3_HUMAN_00094;F5H5W9_HUMAN_00094 3447 VFYRSYKEQESKK wildtype peptide DNA-directed RNA polymerase II subunit RPB2 C9J2Y9_HUMAN_00808;C9J4M6_HUMAN_00740 3448 GTQNKRKIALEDV wildtype peptide mRNA cap guanine-N7 methyltransferase 3449 NLMIQNKDDLARI wildtype peptide Succinate-semialdehyde dehydrogenase, mitochondria F5H328_HUMAN_00047;G5E949_HUMAN_00135 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly 3450 EYQLEQKDVNSLL wildtype peptide factor 4 3451 RESPTDKKQKVER wildtype peptide Rho guanine nucleotide exchange factor 12

3452 AQGLLEKIATPKV wildtype peptide Glutathione S-transferase kappa 1 E9PFN5_HUMAN_00158;GSTK1_HUMAN_00214;GSTK1_HUMAN_00146;GSTK1_HUMAN_00115 3453 LKKLRGKEKPKKG wildtype peptide 28S ribosomal protein S33, mitochondrial C9JBY7_HUMAN_00081;F5H3P2_HUMAN_00091 3454 FSSSTNKEKKKQK wildtype peptide Protein SDA1 homolog E7EW05_HUMAN_00606;SDA1_HUMAN_00546 3455 AEIYKSKLKEEAE wildtype peptide Meiosis-specific nuclear structural protein 1 3456 GGELGSKIPVHPN wildtype peptide Fumarate hydratase, mitochondrial B4DUA5_HUMAN_00353;E7EPA8_HUMAN_00393;F5H8J2_HUMAN_00352;H0Y3Z3_HUMAN_001 3457 LAPIWDKLGETYK wildtype peptide Protein disulfide-isomerase 75 3458 DEKPPKKSLLSKV wildtype peptide DNA repair protein complementing XP-C cells E7EUB5_HUMAN_00039;E9PB96_HUMAN_00045;E9PH69_HUMAN_00045 3459 LFLIKEKSQLVRP wildtype peptide DKFZp667C0210 3460 RQKTAEKERLFLV wildtype peptide Centrosomal protein of 76 kDa CEP76_HUMAN_00204;CEP76_HUMAN_00101 PCY1B_HUMAN_00228;B4E322_HUMAN_00189;C9J050_HUMAN_00228;C9JEJ2_HUMAN_00228 D3DXB2_HUMAN_00228;E9PD84_HUMAN_00210;H7BZN1_HUMAN_00101;H7C1T3_HUMAN_001 3461 QRGYTAKELNVSF wildtype peptide Choline-phosphate cytidylyltransferase A 62;PCY1B_HUMAN_00228;PCY1B_HUMAN_00210 3462 ALKDLLKWVLEGK wildtype peptide Prostaglandin reductase 1 3463 IMKFICKDFWTTV wildtype peptide Trafficking protein particle complex subunit 6B G3V2H7_HUMAN_00069;TPC6B_HUMAN_00070 3464 RSFERQKYLSVQD wildtype peptide BarH-like 1 homeobox protein E7EU50_HUMAN_00050;H3BLV5_HUMAN_00123;DCX_HUMAN_00050;DCX_HUMAN_00050;DCX 3465 QALSNEKKAKKVR wildtype peptide Neuronal migration protein doublecortin _HUMAN_00050;DCX_HUMAN_00050 Acetylome - Acetyltransferase Microarray page 97 of 167

Sequence PEP_FLAG Protein name Uniprot IDs DHE4_HUMAN_00162;B4DGN5_HUMAN_00029;F5GYQ4_HUMAN_00094;F8WA20_HUMAN_0011 3466 VSVDEVKALASLM wildtype peptide Glutamate dehydrogenase 1, mitochondrial 9 3467 KVAKTWKSLSKQE wildtype peptide EF-hand domain-containing family member A2 H0YAN7_HUMAN_00042;H0YB82_HUMAN_00024 3468 YFSSNGKLEEVKT wildtype peptide Cell division cycle-associated protein 2 3469 LGEGAVKRPLDVD wildtype peptide Uncharacterized protein C15orf39 H3BMJ2_HUMAN_00021;CO039_HUMAN_00152 3470 QVRLATKTEPKKL wildtype peptide RNA polymerase II transcription factor SIII subunit A2 ELOA3_HUMAN_00021;EA3L1_HUMAN_00021;EA3L2_HUMAN_00021

3471 ALGSLPKEAARQN wildtype peptide Enoyl-CoA delta isomerase 2, mitochondrial C9JB63_HUMAN_00151;F1LLU7_HUMAN_00104;F8WAW4_HUMAN_00074;ECI2_HUMAN_00069 3472 TMLANEKAPVEGI wildtype peptide SPRY domain-containing protein 4 3473 QLTKGCKVRDHMV wildtype peptide Uncharacterized protein KIAA1841 K1841_HUMAN_00458;K1841_HUMAN_00312 E7ETY2_HUMAN_01362;E9PHK9_HUMAN_01399;TCOF_HUMAN_01285;TCOF_HUMAN_01363;T 3474 ARTPRSKKKKKLG wildtype peptide Treacle protein COF_HUMAN_01398;TCOF_HUMAN_01324;TCOF_HUMAN_01325;TCOF_HUMAN_01286 3475 SKKKGHKNNVTNS wildtype peptide Nuclear receptor-interacting protein 1 3476 IGPIIDKLEKVAV wildtype peptide Obg-like ATPase 1 C9JCJ9_HUMAN_00008;OLA1_HUMAN_00008;OLA1_HUMAN_00166 3477 LTLGHFKEQLSKK wildtype peptide Axin-2 3478 GKFSLFKSKKPRH wildtype peptide Neuroblast differentiation-associated protein AHNAK 3479 GKSFSQKSCLNKH wildtype peptide Zinc finger protein 793 ZN793_HUMAN_00351;E9PGN4_HUMAN_00351;ZN793_HUMAN_00257 3480 ASRSGIKKRHSMP wildtype peptide Protein bassoon 3481 KDGDKKKKKTKEK wildtype peptide Putative heat shock protein HSP 90-alpha A2 3482 GILRRLKKYDNCW wildtype peptide Phosphoenolpyruvate carboxykinase, cytosolic [GTP] 3483 KEVKDVKEFKPES wildtype peptide Androglobin 3484 EKTKLLKEKNEKE wildtype peptide Coiled-coil domain-containing protein 11 3485 RKVIEYKSTRDLE wildtype peptide Protein disulfide-isomerase A2 B3KQU2_HUMAN_00448;Q4TT65_HUMAN_00108;PDIA2_HUMAN_00476 3486 DIKMLNKPKDKVS wildtype peptide Syntaxin-binding protein 3 B7ZMI3_HUMAN_00258;E7EPX7_HUMAN_00258;E7EVP7_HUMAN_00258;G5E9P1_HUMAN_002 58;ITPR1_HUMAN_00258;ITPR1_HUMAN_00258;ITPR1_HUMAN_00258;ITPR1_HUMAN_00258;IT 3487 TCDEHRKKQHVFL wildtype peptide Inositol 1,4,5-trisphosphate receptor type 1 PR1_HUMAN_00258;ITPR1_HUMAN_00258;ITPR1_HUMAN_00258 E9PE68_HUMAN_00141;F5H7T2_HUMAN_00183;F8VQX7_HUMAN_00183;F8VUA7_HUMAN_001 3488 LIYKTQKNGQWVG wildtype peptide Oxysterol-binding protein-related protein 8 58;OSBL8_HUMAN_00168 C9JQS9_HUMAN_00546;E7ETT1_HUMAN_00507;E7ETT4_HUMAN_00469;E7EUY3_HUMAN_005 03;E7EX59_HUMAN_00557;E9PEC3_HUMAN_00410;F5H4H8_HUMAN_00434;PCCB_HUMAN_00 3489 DVLASKKVQRPWR wildtype peptide Propionyl-CoA carboxylase beta chain, mitochondrial 546 3490 LLVPSAKRRSRKT wildtype peptide Trinucleotide repeat-containing gene 18 protein H7BXS9_HUMAN_00115;H9KVB4_HUMAN_02301 3491 TTEIAKKKNKVEK wildtype peptide Sperm flagellar protein 2 D6REZ4_HUMAN_00880;SPEF2_HUMAN_00880 3492 SIALVGKYTKFSD wildtype peptide CTP synthase 1 3493 RQGAELKAAEAEV wildtype peptide Aldehyde dehydrogenase family 16 member A1 F5H4B6_HUMAN_00455;F8WBH3_HUMAN_00453;A16A1_HUMAN_00567 3494 RINEDPKDALLRQ wildtype peptide Kinesin-like protein KIF3A Q05CT3_HUMAN_00326;E9PES4_HUMAN_00356;F5H1C2_HUMAN_00356 EMID1_HUMAN_00383;B0QYK4_HUMAN_00364;C9JPW4_HUMAN_00372;E9PE38_HUMAN_0024 3495 QLREALKILAERV wildtype peptide Collagen alpha-1(XXVI) chain 7;EMID2_HUMAN_00370;EMID1_HUMAN_00381;EMID1_HUMAN_00385 3496 EKELLEKVKHLEN wildtype peptide RB1-inducible coiled-coil protein 1 3497 RRGRRRKYNPTRN wildtype peptide Methyl-CpG-binding domain protein 6 3498 LPLNIDKADTGKN wildtype peptide Retinoid isomerohydrolase 3499 SHAIELKSGSNKN wildtype peptide Phospholipase A-2-activating protein B1AKB6_HUMAN_00082;B1AKB7_HUMAN_00143;B1AKB8_HUMAN_00143;B1AKB9_HUMAN_00 3500 ASQGSKKSKSSSK wildtype peptide MyoD family inhibitor 082 3501 MPCKYGKPVNDYS wildtype peptide Lysosomal-trafficking regulator 3502 KIFQGNKDYHQDV wildtype peptide Discoidin, CUB and LCCL domain-containing protein 2 E7ET90_HUMAN_00359;DCBD2_HUMAN_00410 Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-E7EQ76_HUMAN_00065;H3BP08_HUMAN_00047;H3BTA8_HUMAN_00014;HERP1_HUMAN_000 3503 HLVCNVKSPSKMP wildtype peptide like domain member 1 protein 88;HERP1_HUMAN_00088 3504 PKKESKKKTLKND wildtype peptide HIV Tat-specific factor 1 Acetylome - Acetyltransferase Microarray page 98 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3505 YHESDSKKSEDLS wildtype peptide TIR domain-containing adapter molecule 2 3506 KKLKFCKSHIHDW wildtype peptide Histone-lysine N-methyltransferase SETD1B 3507 MQLCANKLDKKDF wildtype peptide Copine-9 3508 ZZZZZMKFLLDIL wildtype peptide Estradiol 17-beta-dehydrogenase 11 3509 AILEKIKKNQRQD wildtype peptide Ubiquitin-conjugating enzyme E2 Q1 3510 GLSTGEKEKLPGE wildtype peptide Eukaryotic translation initiation factor 3 subunit G 3511 KIKDAKKPSFPWF wildtype peptide Pantothenate kinase 3 3512 DGRKMSKKKTAVK wildtype peptide Synaptotagmin-12 Q5JV20_HUMAN_00586;E7ENN3_HUMAN_08043;E7EQI5_HUMAN_08431;E9PEL9_HUMAN_083 83;F5GXQ9_HUMAN_00611;F8WAI0_HUMAN_00609;H0Y325_HUMAN_01376;H0Y326_HUMAN_0 1077;SYNE1_HUMAN_02955;SYNE1_HUMAN_00616;SYNE1_HUMAN_08383;SYNE1_HUMAN_02 3513 QAQALSKELRMKQ wildtype peptide Nesprin-1 846;SYNE1_HUMAN_00611 3514 FNKGKLKVLATTF wildtype peptide Heat shock 70 kDa protein 4L D6RJ96_HUMAN_00180;E7ES43_HUMAN_00252;E9PDE8_HUMAN_00195 3515 EYELEAKSHLKDD wildtype peptide Cingulin-like protein 1 3516 LIEEVRKARGKKR wildtype peptide Cyclic AMP-dependent transcription factor ATF-4 3517 SDDYTKKKKKGKK wildtype peptide Transcriptional regulator ATRX ATRX_HUMAN_01726;ATRX_HUMAN_01813;ATRX_HUMAN_01892;ATRX_HUMAN_01775 3518 KGKKGKKDSSSSG wildtype peptide Transcriptional regulator ATRX ATRX_HUMAN_01735;ATRX_HUMAN_01822;ATRX_HUMAN_01901;ATRX_HUMAN_01784 H0YF38_HUMAN_00155;E9PE65_HUMAN_00160;F8W807_HUMAN_00185;H7BXJ9_HUMAN_000 3519 KEYNYDKSIVDSG wildtype peptide Beta-secretase 1 51;BACE1_HUMAN_00260;BACE1_HUMAN_00241;BACE1_HUMAN_00216 3520 TLKLLCKNFGAEN wildtype peptide HEAT repeat-containing protein 1 3521 HIRSINKGGQLRP wildtype peptide Bone morphogenetic protein 8a 3522 QKVALKKVLMENE wildtype peptide Cyclin-dependent kinase 9 3523 ISTVSKKDFISVL wildtype peptide RRP15-like protein 3524 RKARAKKNKAMKS wildtype peptide Chromodomain-helicase-DNA-binding protein 1 F5GWX5_HUMAN_00108;F5H2G1_HUMAN_00089;F5H596_HUMAN_00108;F5H6N4_HUMAN_001 3525 DYTPGKKKKKKLG wildtype peptide Chromodomain-helicase-DNA-binding protein 4 15;CHD4_HUMAN_00115 F5GWX5_HUMAN_00278;F5H2G1_HUMAN_00259;F5H6N4_HUMAN_00285;CHD4_HUMAN_0028 3526 RVPDAKKPKPKKV wildtype peptide Chromodomain-helicase-DNA-binding protein 4 5 3527 KKKLKDKKEKKAK wildtype peptide Chromodomain-helicase-DNA-binding protein 5 3528 NIRIMAKYYTRIT wildtype peptide 26S proteasome non-ATPase regulatory subunit 12 3529 LKGLNSKLLDIRS wildtype peptide 26S proteasome non-ATPase regulatory subunit 7 3530 LTPIIFKEENLRT wildtype peptide 28S ribosomal protein S22, mitochondrial G5E9V5_HUMAN_00210;G5E9W7_HUMAN_00170 E5RFH3_HUMAN_00071;E5RGC7_HUMAN_00051;E5RK86_HUMAN_00071;H0YAT2_HUMAN_00 3531 PEVDGEKYQKGTR wildtype peptide 28S ribosomal protein S28, mitochondrial 089;H7C5V3_HUMAN_00156 3532 RKHDLHKMAEANR wildtype peptide 28S ribosomal protein S7, mitochondrial 3533 IKGAGGKAFCAGG wildtype peptide 3-hydroxyisobutyryl-CoA hydrolase, mitochondria B8ZZZ0_HUMAN_00146;HIBCH_HUMAN_00092 3534 QNNVEHKVETFSG wildtype peptide 40S ribosomal protein S7 3535 REIQNLKLFRHPH wildtype peptide 5-AMP-activated protein kinase catalytic subunit alpha-2 AAPK1_HUMAN_00080;Q96E92_HUMAN_00071;AAPK1_HUMAN_00080 3536 AIQHNYKMSAFKE wildtype peptide 5-nucleotidase domain-containing protein 1 B1APP8_HUMAN_00106;Q5VSR7_HUMAN_00680;H0Y3P8_HUMAN_00677;H0Y757_HUMAN_000 3537 DRNFGTKISARAM wildtype peptide 6-phosphofructokinase type C 41 3538 RIILLVKAGQAVD wildtype peptide 6-phosphogluconate dehydrogenase, decarboxylating B4DQJ8_HUMAN_00063;F5H7U0_HUMAN_00076 3539 NIWIPMKPYYTKV wildtype peptide 6.8 kDa mitochondrial proteolipid G3V556_HUMAN_00014;G3V5Q3_HUMAN_00014 3540 RAMELLKVSKDKQ wildtype peptide 60S ribosomal protein L36 3541 LAVKELKZZZZZZ wildtype peptide 60S ribosomal protein L38 3542 LRQLAQKYNCDKM wildtype peptide Ubiquitin-60S ribosomal protein L40 F8VRY1_HUMAN_00007;F8VWR1_HUMAN_00007;F8VZ45_HUMAN_00007;F8VZA3_HUMAN_000 3543 ZZMAGEKVEKPDT wildtype peptide 60S ribosomal protein L6 07 3544 RNFAELKIKRLRK wildtype peptide 60S ribosomal protein L7 3545 VNPLFEKRPKNFG wildtype peptide 60S ribosomal protein L7a Acetylome - Acetyltransferase Microarray page 99 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3546 ASLRDEKGALFQA wildtype peptide Acyl-coenzyme A thioesterase 2, mitochondrial ACOT1_HUMAN_00042;G3V4F2_HUMAN_00042

3547 KIDMCKKSLSPEQ wildtype peptide Acyl-coenzyme A thioesterase 9, mitochondrial C9J7L8_HUMAN_00097;ACOT9_HUMAN_00124;ACOT9_HUMAN_00097;ACOT9_HUMAN_00166 3548 AELEIQKDALEPG wildtype peptide Adenine phosphoribosyltransferase G5E9J2_HUMAN_00114;H3BQB1_HUMAN_00114;H3BQZ9_HUMAN_00087 3549 LNVKLTKLTEKQA wildtype peptide Adenosylhomocysteinase 3550 RLADFAKERASLP wildtype peptide Adenylosuccinate lyase B0QY75_HUMAN_00161;E7ERF4_HUMAN_00161;PUR8_HUMAN_00147

ARF3_HUMAN_00036;ARF1_HUMAN_00036;ARF5_HUMAN_00036;B7ZB63_HUMAN_00036;C9J1 Z8_HUMAN_00036;C9JPM4_HUMAN_00036;F5H0C7_HUMAN_00036;F5H3A6_HUMAN_00036;F5 3551 KTTILYKLKLGEI wildtype peptide ADP-ribosylation factor 4 H423_HUMAN_00036;F5H6T5_HUMAN_00036;F8WCJ5_HUMAN_00036;F8WDB3_HUMAN_00036 3552 ZZMSILKIHAREI wildtype peptide Alpha-enolase 3553 NVTEQEKIDKLMI wildtype peptide Alpha-enolase 3554 EGLELLKTAIGKA wildtype peptide Alpha-enolase 3555 LYKSFIKDYPVVS wildtype peptide Alpha-enolase 3556 NLKNVIKEKYGKD wildtype peptide Alpha-enolase 3557 EEWYKSKFANLNE wildtype peptide Alpha-internexin 3558 DFRSLEKISREVK wildtype peptide Apoptosis-inducing factor 1, mitochondrial Q1L6K4_HUMAN_00208;AIFM1_HUMAN_00291;AIFM1_HUMAN_00295 3559 GSIPEGKPLRTLL wildtype peptide Arf-GAP domain and FG repeat-containing protein 2 3560 RLNILRKSLQAER wildtype peptide Arginine--tRNA ligase, cytoplasmic E5RH09_HUMAN_00060;E5RJM9_HUMAN_00060 3561 ASVVEYKGLRAGY wildtype peptide Arginyl-tRNA--protein transferase 1 (Fragment) 3562 YRDDNGKPYVLPS wildtype peptide Aspartate aminotransferase, mitochondrial B4DY39_HUMAN_00073;E7ERW2_HUMAN_00073 3563 RDVFLPKPTWGNH wildtype peptide Aspartate aminotransferase, mitochondrial 3564 IVRIGEKYVDMSV wildtype peptide ATP synthase subunit O, mitochondrial 3565 QKLFVDKIREYKS wildtype peptide ATP synthase-coupling factor 6, mitochondrial B4DGL8_HUMAN_00190;G3V1J3_HUMAN_00190;G3XAC4_HUMAN_00176;E9PJR8_HUMAN_001 3566 RNAVFGKVAQNSI wildtype peptide ATP-binding cassette sub-family B member 7, mitochondrial 61;ABCB7_HUMAN_00217 3567 GKSTALKILAGKQ wildtype peptide ATP-binding cassette sub-family E member 1 D6R9I9_HUMAN_00121;D6RGF4_HUMAN_00121;H0Y990_HUMAN_00054 3568 RQLLHEKIRDAYT wildtype peptide ATP-binding cassette sub-family E member 1 3569 ILIPVFKNMADAM wildtype peptide ATP-citrate synthase B4E3P0_HUMAN_00283;E7ENH9_HUMAN_00608;ACLY_HUMAN_00544 B7WNZ6_HUMAN_00047;E7EPN9_HUMAN_00049;E9PF21_HUMAN_00047;PRC2C_HUMAN_000 47;PRC2C_HUMAN_00047;PRC2C_HUMAN_00047;PRC2C_HUMAN_00047;PRC2C_HUMAN_000 3570 GLQSLGKVGISRR wildtype peptide Protein PRRC2C 49 E9PK09_HUMAN_00421;E9PK91_HUMAN_00421;E9PKI6_HUMAN_00421;E9PQN2_HUMAN_004 3571 VLADQGKSFATAS wildtype peptide Bcl-2-associated transcription factor 1 19;BCLF1_HUMAN_00419;BCLF1_HUMAN_00419 3572 GPSGSGKHHRQAP wildtype peptide Bcl2 antagonist of cell death A8MXU7_HUMAN_00036;F5GY71_HUMAN_00036;F5GYS3_HUMAN_00036 3573 ANHKESKMTIFEK wildtype peptide Beta-crystallin A3 3574 EQFVFEKGEYPRW wildtype peptide Beta-crystallin B2 3575 EALGIRKPYIWEY wildtype peptide Bifunctional glutamate/proline--tRNA ligase E7EMN0_HUMAN_00441;F5H7I7_HUMAN_00417 Q96HY3_HUMAN_00059;E7EMB3_HUMAN_00142;E7ETZ0_HUMAN_00096;G3V361_HUMAN_000 3576 AFRVFDKDGNGYI wildtype peptide Calmodulin 59;H0Y7A7_HUMAN_00133 3577 RWQAIYKQFDTDR wildtype peptide Calpain small subunit 1 B7Z468_HUMAN_00675;B7Z574_HUMAN_00615;E7EPY6_HUMAN_00351;E7EQ12_HUMAN_0034 4;E7EQA0_HUMAN_00352;E7ES10_HUMAN_00629;E7ESM9_HUMAN_00690;E7EVY3_HUMAN_0 0614;E9PCH5_HUMAN_00594;E9PDE4_HUMAN_00557;G5E946_HUMAN_00607;G5E9D3_HUMA N_00671;H0Y7F0_HUMAN_00381;H0Y9H6_HUMAN_00386;H0YD33_HUMAN_00371;ICAL_HUMA N_00616;ICAL_HUMAN_00511;ICAL_HUMAN_00588;ICAL_HUMAN_00677;ICAL_HUMAN_00712;I 3578 DDNGQDKPVKPPT wildtype peptide Calpastatin CAL_HUMAN_00693 3579 KNVLINKDIRCKD wildtype peptide Calreticulin 3580 KVTSPEKAEEAKL wildtype peptide cAMP-regulated phosphoprotein 19 H3BMD8_HUMAN_00045;H3BTD3_HUMAN_00010;ARP19_HUMAN_00010 3581 DELGLSKYLESNG wildtype peptide Carbamoyl-phosphate synthase [ammonia], mitochondrial Q5R211_HUMAN_00119;H0YGP4_HUMAN_00127;E7EWJ3_HUMAN_00125 Acetylome - Acetyltransferase Microarray page 100 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3582 ZMEDYTKIEKIGE wildtype peptide Cyclin-dependent kinase 1 E5RIU6_HUMAN_00007;CDK1_HUMAN_00007 3583 TPETAEKLARDLK wildtype peptide Cell division control protein 42 homolog E7ETU3_HUMAN_00186;CDC42_HUMAN_00144 3584 AVGDVEKMALVKL wildtype peptide Cell division cycle protein 23 homolog 3585 SAQPIEKFVTDID wildtype peptide Cyclin-dependent kinase 6 3586 SHLKSKKGQSTSR wildtype peptide Cellular tumor antigen p53 P53_HUMAN_00334;P53_HUMAN_00241 3587 TKMDNLKYVNQLK wildtype peptide Centromere protein F 3588 QTSAVVKNLREER wildtype peptide Coiled-coil domain-containing protein 58 C9JQ41_HUMAN_00069;H7C525_HUMAN_00080 Coiled-coil-helix-coiled-coil-helix domain-containing protein 3, 3589 KQDAFYKEQLARL wildtype peptide mitochondrial C9JRZ6_HUMAN_00147;F8WAR4_HUMAN_00172 CPLX2_HUMAN_00014;B4DEW3_HUMAN_00014;D6R960_HUMAN_00014;D6RBA5_HUMAN_000 14;D6RDN3_HUMAN_00014;D6RGY3_HUMAN_00014;D6RI05_HUMAN_00014;D6RI11_HUMAN_0 3590 ALGGATKDMGKML wildtype peptide Complexin-1 0014;H0YA51_HUMAN_00097 3591 ALDTYEKGQLTSS wildtype peptide Conserved oligomeric Golgi complex subunit 4 B4DDL2_HUMAN_00105;COG4_HUMAN_00370 Q5JX44_HUMAN_00171;Q5JX45_HUMAN_00147;Q5JX52_HUMAN_00147;Q5JX58_HUMAN_0017 1;Q5JX59_HUMAN_00171;Q5JX60_HUMAN_00171;Q5JX61_HUMAN_00147;A6PVH9_HUMAN_00 3592 FRQGDGKWHLVYR wildtype peptide Copine-1 171;E7ENH5_HUMAN_00171;F2Z2V0_HUMAN_00171 3593 GKKKMSKLSRSAR wildtype peptide Core histone macro-H2A.2 3594 AINFHDKIRKGCV wildtype peptide Cytosolic acyl coenzyme A thioester hydrolase B4DUX0_HUMAN_00168;BACH_HUMAN_00241;BACH_HUMAN_00253;BACH_HUMAN_00232 3595 SGKHWSKSVMDKQ wildtype peptide D-tyrosyl-tRNA(Tyr) deacylase 1 3596 QVKCLLKYSTTWK wildtype peptide DDB1- and CUL4-associated factor 16 3597 KSFIHIKEVTVEK wildtype peptide Dedicator of cytokinesis protein 2 3598 IKGAALKYLPSII wildtype peptide Dedicator of cytokinesis protein 5 3599 SFARIKKWLEHAR wildtype peptide Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondria 3600 EEEEDGKLKKPKN wildtype peptide DNA topoisomerase 1 TOP2B_HUMAN_00992;C9J4C3_HUMAN_01052;C9J5P2_HUMAN_01007;E9PCY5_HUMAN_0098 7;H7BXH5_HUMAN_01051;H7BXX8_HUMAN_00994;TOP2A_HUMAN_00997;TOP2A_HUMAN_010 3601 TVKFVVKMTEEKL wildtype peptide DNA topoisomerase 2-alpha 07;TOP2A_HUMAN_01052;TOP2B_HUMAN_00987

3602 KVPHSGKTEGSTA wildtype peptide DNA-binding protein RFX7 C9JU50_HUMAN_00607;H0YLP2_HUMAN_00607;H0YLX2_HUMAN_00607;RFX7_HUMAN_00607 3603 AQKGFNKVVLKHL wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_00828;PRKDC_HUMAN_00828 3604 GFLFSEKPEKNLL wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_01969;PRKDC_HUMAN_01970 3605 NKKNIEKMYERMY wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_03607;PRKDC_HUMAN_03608 EF1A2_HUMAN_00044;Q5JR01_HUMAN_00044;Q6IQ15_HUMAN_00044;F8W6I0_HUMAN_00044 3606 TIEKFEKEAAEMG wildtype peptide Elongation factor 1-alpha 1 A6PW80_HUMAN_00044;E7EPH7_HUMAN_00044;EF1A3_HUMAN_00044 3607 EVSTYIKKIGYNP wildtype peptide Elongation factor 1-alpha 1 Q6IQ15_HUMAN_00158;F8W6I0_HUMAN_00179;EF1A3_HUMAN_00179 3608 VAVGVIKAVDKKA wildtype peptide Elongation factor 1-alpha 1 Q6IQ15_HUMAN_00418;EF1A3_HUMAN_00439 3609 EVSTYIKKIGHNT wildtype peptide Elongation factor 1-alpha 1 C9JZW3_HUMAN_00007;F2Z2G2_HUMAN_00007;F8WF65_HUMAN_00007;F8WFC9_HUMAN_00 3610 MGFGDLKSPAGLQ wildtype peptide Elongation factor 1-beta 007 Q4VBZ6_HUMAN_00083;E9PBQ9_HUMAN_00088;E9PK01_HUMAN_00107;E9PQZ1_HUMAN_00 064;E9PRY8_HUMAN_00523;F8W934_HUMAN_00401;E9PI39_HUMAN_00107;E9PIZ1_HUMAN_0 0123;E9PK06_HUMAN_00088;E9PL12_HUMAN_00107;E9PL71_HUMAN_00083;E9PMW7_HUMA N_00107;E9PN91_HUMAN_00083;E9PPR1_HUMAN_00107;E9PQ49_HUMAN_00107;H0YCK7_HU 3611 LQQAISKLEARLN wildtype peptide Elongation factor 1-delta MAN_00187;EF1D_HUMAN_00473 B4DR76_HUMAN_00165;B0QYZ7_HUMAN_00084;B1AKL3_HUMAN_00323;B1AKL4_HUMAN_004 3612 DMTAFNKLVSTMK wildtype peptide Eukaryotic translation initiation factor 4E transporter 86;4ET_HUMAN_00323 IF5AL_HUMAN_00068;IF5A2_HUMAN_00068;C9J4W5_HUMAN_00049;C9J7B5_HUMAN_00068;F 3613 DIFTGKKYEDICP wildtype peptide Eukaryotic translation initiation factor 5A-1 8WCJ1_HUMAN_00068;IF5A1_HUMAN_00098 3614 ZZMTAIKHALQRD wildtype peptide Exocyst complex component 1 3615 PPRTRNKFATFLQ wildtype peptide Exonuclease 1 E7EVV0_HUMAN_00482;EXO1_HUMAN_00482 Acetylome - Acetyltransferase Microarray page 101 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3616 SNLQHQKIRMSLV wildtype peptide Exosome complex exonuclease RRP44 G3V1J5_HUMAN_00760;RRP44_HUMAN_00892 3617 DSINLYKNMRETL wildtype peptide Exportin-1 3618 NDTFTVKYTPRGA wildtype peptide Filamin-A A6NDY9_HUMAN_00810;Q5HY54_HUMAN_00837;FLNA_HUMAN_00837

3619 CEEILVKHVGSRL wildtype peptide Filamin-A A6NDY9_HUMAN_02275;Q5HY54_HUMAN_02567;E9PHF0_HUMAN_00740;FLNA_HUMAN_02599

3620 IGGSPFKAKVTGP wildtype peptide Filamin-A A6NDY9_HUMAN_02181;Q5HY54_HUMAN_02473;E9PHF0_HUMAN_00646;FLNA_HUMAN_02505 E7EN95_HUMAN_01977;H7C5L4_HUMAN_00094;FLNB_HUMAN_02146;FLNB_HUMAN_02129;FL 3621 VHTVSVKYRGQHV wildtype peptide Filamin-B NB_HUMAN_02105;FLNB_HUMAN_01990;FLNB_HUMAN_02201;FLNB_HUMAN_02159 3622 FKVGVGKVIRGWD wildtype peptide Peptidyl-prolyl cis-trans isomerase FKBP3 3623 RGTVYFKEGKYKQ wildtype peptide Peptidyl-prolyl cis-trans isomerase FKBP4 3624 YVNAIEKVFKVYS wildtype peptide Glutamate dehydrogenase 2, mitochondrial 3625 DDTNPEKEEAKFF wildtype peptide Glutamine--tRNA ligase B4DNN3_HUMAN_00259;B4DWJ2_HUMAN_00298 3626 HRLFEYKEDSKLD wildtype peptide Glutathione reductase, mitochondrial GSHR_HUMAN_00358;GSHR_HUMAN_00372;GSHR_HUMAN_00348;GSHR_HUMAN_00319 Q5TA01_HUMAN_00029;Q5TA02_HUMAN_00029;D3DRA3_HUMAN_00029;F5H7H0_HUMAN_000 3627 VININLKNKPEWF wildtype peptide Glutathione S-transferase omega-1 57 3628 FRKEFTKLEEVLT wildtype peptide Glutathione S-transferase omega-1 Q5TA02_HUMAN_00124;D3DRA3_HUMAN_00124 Q5TA01_HUMAN_00038;Q5TA02_HUMAN_00038;D3DRA3_HUMAN_00038;F5H7H0_HUMAN_000 3629 PEWFFKKNPFGLV wildtype peptide Glutathione S-transferase omega-1 66 A8K7Q2_HUMAN_00295;E9PKE3_HUMAN_00512;E9PM13_HUMAN_00083;E9PNE6_HUMAN_00 3630 YKAEDEKQRDKVS wildtype peptide Heat shock cognate 71 kDa protein 385;E9PS65_HUMAN_00122 3631 RYTLHYKTDAPLN wildtype peptide Heat shock protein 75 kDa, mitochondrial 3632 FFIDQSKKDAEKY wildtype peptide Heat shock protein 75 kDa, mitochondrial 3633 QQSKILKVIRKNL wildtype peptide Heat shock protein HSP 90-alpha Q86U12_HUMAN_00231;HS90A_HUMAN_00532 3634 NLCKIMKDILEKK wildtype peptide Heat shock protein HSP 90-alpha Q86U12_HUMAN_00397;HS90A_HUMAN_00698

HS90B_HUMAN_00064;HS902_HUMAN_00069;H90B2_HUMAN_00064;Q5T9W8_HUMAN_00064; 3635 SLTDPSKLDSGKE wildtype peptide Heat shock protein HSP 90-alpha G3V2J8_HUMAN_00069;H90B3_HUMAN_00064;HS904_HUMAN_00009;HS90A_HUMAN_00191 3636 ZZZZMEKTLETVP wildtype peptide Heterogeneous nuclear ribonucleoproteins A2/B1 HNRPC_HUMAN_00170;B2R603_HUMAN_00170;B4DY08_HUMAN_00157;G3V2D6_HUMAN_000 78;G3V2Q1_HUMAN_00170;G3V4C1_HUMAN_00157;G3V4W0_HUMAN_00157;G3V575_HUMAN _00170;G3V576_HUMAN_00170;G3V5V7_HUMAN_00054;G8JL89_HUMAN_00065;HNRPC_HUMA 3637 NTSRRGKSGFNSK wildtype peptide Heterogeneous nuclear ribonucleoprotein C-like 1 N_00157;HNRPC_HUMAN_00090 High mobility group nucleosome-binding domain-containing protein 3638 KAEEAQKTESVDN wildtype peptide 3 Q5T7C0_HUMAN_00012;Q5T7C4_HUMAN_00012;Q5T7C6_HUMAN_00012;E9PFF0_HUMAN_000 3639 PKKPRGKMSSYAF wildtype peptide High mobility group protein B1 12;HGB1A_HUMAN_00012 Q5T7C0_HUMAN_00059;Q5T7C4_HUMAN_00059;Q5T7C6_HUMAN_00059;E9PFF0_HUMAN_000 3640 SAKEKGKFEDMAK wildtype peptide High mobility group protein B1 59;HGB1A_HUMAN_00059 3641 SAKEKSKFEDMAK wildtype peptide High mobility group protein B2

H2A1_HUMAN_00119;H2A1D_HUMAN_00119;H2A2A_HUMAN_00119;H2A3_HUMAN_00119;H2A 3642 QAVLLPKKTESHH wildtype peptide Histone H2A type 1-B/E 1C_HUMAN_00119;H2A1H_HUMAN_00119;H2A1A_HUMAN_00119;H2A1J_HUMAN_00119 H2AV_HUMAN_00007;A6NFA8_HUMAN_00007;A8MQC5_HUMAN_00007;C9J0D1_HUMAN_0000 3643 ZZMAGGKAGKDSG wildtype peptide Histone H2A.Z 7;C9J386_HUMAN_00007;H2AV_HUMAN_00007 3644 ZMSGRGKTGGKAR wildtype peptide Histone H2A.x 3645 VIPHIHKSLIGKK wildtype peptide Histone H2A.Z H2AV_HUMAN_00116;A6NFA8_HUMAN_00078;A6NKY0_HUMAN_00090 3646 ISKKGFKKAVVKT wildtype peptide Histone H2B type 1-A 3647 ZMPEPSKSAPAPK wildtype peptide Histone H2B type 1-B 3648 TLVLSDKHSPQKK wildtype peptide Histone-lysine N-methyltransferase MLL3 H7BY37_HUMAN_00315;MLL3_HUMAN_01870;MLL3_HUMAN_02809 Acetylome - Acetyltransferase Microarray page 102 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3649 KREQENKTLVLSD wildtype peptide Histone-lysine N-methyltransferase MLL3 3650 PAPPPYKAPRLDE wildtype peptide Histone-lysine N-methyltransferase MLL4 3651 KVATHEKEWKCTN wildtype peptide Host cell factor 1 A6NEM2_HUMAN_00288;HCFC1_HUMAN_00288;HCFC1_HUMAN_00288 Q3KNR6_HUMAN_00153;F6VDH7_HUMAN_00116;H7C3I1_HUMAN_00066;ST134_HUMAN_0014 3652 LAILYAKRASVFV wildtype peptide Hsc70-interacting protein 9;F10A5_HUMAN_00153 3653 FRQFFTKIKTADR wildtype peptide Hsp90 co-chaperone Cdc37 3654 QFKEIQKLIKEPA wildtype peptide Isochorismatase domain-containing protein 2, mitochondrial ISOC2_HUMAN_00198;ISOC2_HUMAN_00112 3655 TTTDFIKSVIGHL wildtype peptide Isocitrate dehydrogenase [NAD] subunit beta, mitochondria 3656 HYRMYQKGQETST wildtype peptide Isocitrate dehydrogenase [NADP] cytoplasmic 3657 KLKKMWKSPNGTI wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial 3658 TKNTILKAYDGRF wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial B4DFL2_HUMAN_00204;B4DSZ6_HUMAN_00126;H0YL11_HUMAN_00147 3659 TDFDKNKIWYEHR wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial B4DFL2_HUMAN_00230;B4DSZ6_HUMAN_00152;H0YL11_HUMAN_00173 Q3BDU5_HUMAN_00108;Q5TCJ4_HUMAN_00108;Q6UYC3_HUMAN_00108;LMNA_HUMAN_0010 3660 LQLELSKVREEFK wildtype peptide Prelamin-A/C 8;LMNA_HUMAN_00108 Q3BDU5_HUMAN_00417;Q5TCI8_HUMAN_00336;Q5TCJ4_HUMAN_00417;Q6UYC3_HUMAN_00 417;D6RAQ3_HUMAN_00318;E7EUI9_HUMAN_00305;LMNA_HUMAN_00417;LMNA_HUMAN_004 3661 GGGSVTKKRKLES wildtype peptide Prelamin-A/C 17 3662 EEKYVAKELAVRT wildtype peptide Lamin-B receptor 3663 EQTYHAKLENARL wildtype peptide Lamin-B1 3664 ASLAAAKKQLADE wildtype peptide Lamin-B1 3665 EINAYRKLLEGEE wildtype peptide Lamin-B2 3666 KGEDFVKTLKZZZ wildtype peptide Malate dehydrogenase, mitochondrial E9PDB2_HUMAN_00293;G3XAL0_HUMAN_00228 3667 LKGIDYKTVPINL wildtype peptide Maleylacetoacetate isomerase 3668 VDKGAIKFVLSGA wildtype peptide Malignant T-cell-amplified sequence 1 MCTS1_HUMAN_00091;MCTS1_HUMAN_00104 3669 LNPGLTKPPVPRV wildtype peptide Mastermind-like protein 1 3670 LTYGNTKPLTHFN wildtype peptide Mastermind-like protein 3 E7ESR8_HUMAN_00131;E7EVW8_HUMAN_00603;H0Y2R5_HUMAN_00447 B3KM87_HUMAN_00233;A8MXP9_HUMAN_00571;D6REM6_HUMAN_00571;MATR3_HUMAN_002 3671 KVDLSEKYKKLVL wildtype peptide Matrin-3 83 3672 KYGDFNKEVHKSG wildtype peptide Moesin E7ERN7_HUMAN_00190;MOCS1_HUMAN_00198;MOCS1_HUMAN_00169;MOCS1_HUMAN_0011 1;MOCS1_HUMAN_00198;MOCS1_HUMAN_00198;MOCS1_HUMAN_00111;MOCS1_HUMAN_001 3673 RRKGFHKVMEGIH wildtype peptide Molybdenum cofactor biosynthesis protein 1 98 B3KTM8_HUMAN_00129;B7Z6R1_HUMAN_00016;H0YLV1_HUMAN_00016;H0YM21_HUMAN_000 16;H0YMJ0_HUMAN_00114;H0YMT8_HUMAN_00016;H0YNE0_HUMAN_00120;H0YNI8_HUMAN_ 3674 TSGLQQKNVEVKT wildtype peptide Mortality factor 4-like protein 1 00016;H0YNX3_HUMAN_00016;MO4L1_HUMAN_00104 3675 PGDAVHKIYPSAY wildtype peptide Mothers against decapentaplegic homolog 4 3676 NFMSVAKTILKRL wildtype peptide MOB kinase activator 1B MOB1A_HUMAN_00149;B4DRY3_HUMAN_00154 3677 KNHLEGKAAISNK wildtype peptide Multifunctional protein ADE2 E9PBS1_HUMAN_00053;PUR6_HUMAN_00053 NAA11_HUMAN_00136;A6NM98_HUMAN_00121;A8MWP7_HUMAN_00136;C9JN83_HUMAN_001 3678 ISEVEPKYYADGE wildtype peptide N-alpha-acetyltransferase 10 15;C9JW55_HUMAN_00130;F8W808_HUMAN_00136;H0Y8T0_HUMAN_00018 3679 LRKYREKYCTFND wildtype peptide NAD-dependent malic enzyme, mitochondrial 3680 APVLFNKEMIESM wildtype peptide NAD(P) transhydrogenase, mitochondrial 3681 VGHHLGKSIPTDN wildtype peptide NAD(P)H dehydrogenase [quinone] 1 B4DLR8_HUMAN_00190;H3BNV2_HUMAN_00241;NQO1_HUMAN_00228 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit Q8WXC9_HUMAN_00272;C9JGP9_HUMAN_00242;E7ESZ7_HUMAN_00242;H7C1Y7_HUMAN_00 3682 DIENAYKKTFLPE wildtype peptide 10, mitochondrial 013;H7C2W5_HUMAN_00007

3683 CSDVQPKLWARYA wildtype peptide NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

3684 PSTSADKVESLDV wildtype peptide Nuclear autoantigenic sperm protein Q5T624_HUMAN_00033;Q5T626_HUMAN_00033;E9PI86_HUMAN_00033;NASP_HUMAN_00033 Acetylome - Acetyltransferase Microarray page 103 of 167

Sequence PEP_FLAG Protein name Uniprot IDs P121A_HUMAN_00737;A8MXF9_HUMAN_00472;P121B_HUMAN_00321;P121C_HUMAN_00472;P 3685 IFTAPPKSEKEGP wildtype peptide Nuclear envelope pore membrane protein POM 121C 121A_HUMAN_00472;P121A_HUMAN_00472 3686 WLIEDGKVVTVHL wildtype peptide Nuclear migration protein nudC 3687 NRSVYFKPSLTPS wildtype peptide Nuclear pore complex protein Nup153 Q4LE47_HUMAN_00406;F6QR24_HUMAN_00384 3688 AVHLLDKILKKHK wildtype peptide Nuclear pore complex protein Nup205 F2Z2D0_HUMAN_00041;F8WCW4_HUMAN_00041 H0YEN4_HUMAN_00206;NUP98_HUMAN_00586;NUP98_HUMAN_00603;NUP98_HUMAN_00586; 3689 IKKLVLKNLNNSN wildtype peptide Nuclear pore complex protein Nup98-Nup96 NUP98_HUMAN_00586;NUP98_HUMAN_00603 3690 VASLSVKLEQAMK wildtype peptide Nucleoprotein TPR 3691 LTATTQKQEQIIN wildtype peptide Nucleoprotein TPR 3692 QHYIDLKDRPFFP wildtype peptide Nucleoside diphosphate kinase B Q32Q12_HUMAN_00196;NDK8_HUMAN_00041;NDKB_HUMAN_00171 3693 SVKSAEKEISLWF wildtype peptide Nucleoside diphosphate kinase B Q32Q12_HUMAN_00268;F6XY72_HUMAN_00053;NDKB_HUMAN_00243

B3KNT8_HUMAN_00116;B7Z9C2_HUMAN_00075;F5H1X5_HUMAN_00116;F5H4R6_HUMAN_001 16;F8VRJ2_HUMAN_00075;F8VV59_HUMAN_00075;F8VVB5_HUMAN_00142;F8VY35_HUMAN_0 0116;F8W020_HUMAN_00116;F8W0J6_HUMAN_00116;F8W118_HUMAN_00075;F8W543_HUMA 3694 YQPLFDKRFEIIN wildtype peptide Nucleosome assembly protein 1-like 1 N_00053;H0YH88_HUMAN_00056;H0YHC3_HUMAN_00078;H0YIV4_HUMAN_00110

3695 TTSKETKKDTKLY wildtype peptide Nucleosome-remodeling factor subunit BPTF E7ETD6_HUMAN_00391;E9PE19_HUMAN_00010;BPTF_HUMAN_02737;BPTF_HUMAN_02720 3696 LIATAVKFLQNSR wildtype peptide Peroxisomal membrane protein PEX14 E7EWE5_HUMAN_00683;E9PB82_HUMAN_00689;F5HE57_HUMAN_00732;E7EPL9_HUMAN_004 3697 GKLDPQKAFFSGR wildtype peptide Peroxisomal multifunctional enzyme type 2 45;E7ET17_HUMAN_00570;G5E9S2_HUMAN_00567 3698 VLNIKYKNDFSPN wildtype peptide Peroxisome biogenesis factor 2 3699 NSFNKGKHGFSDN wildtype peptide PEST proteolytic signal-containing nuclear protein D3DN52_HUMAN_00173;PCNP_HUMAN_00029 3700 SEHCYQKPRAYYP wildtype peptide PHD finger protein 20 3701 YGSQGYKYNWKLD wildtype peptide Phenylalanine--tRNA ligase alpha subunit 3702 GEGVLTKECRKKA wildtype peptide Pleckstrin homology domain-containing family F member 1 PLEC_HUMAN_02981;PLEC_HUMAN_02977;PLEC_HUMAN_02954;PLEC_HUMAN_02954;PLEC_ 3703 GRITVEKIIKIII wildtype peptide Plectin HUMAN_02958;PLEC_HUMAN_02922;PLEC_HUMAN_02932;PLEC_HUMAN_02940 3704 PKPEFGKLKKFSQ wildtype peptide PML-RARA-regulated adapter molecule 1 3705 CKGCMEKIEKGQV wildtype peptide Poly [ADP-ribose] polymerase 1 3706 VLEKGGKVFSATL wildtype peptide Poly [ADP-ribose] polymerase 1 3707 EKISENKFLKYLS wildtype peptide Poly(A) RNA polymerase, mitochondrial Q5T851_HUMAN_00052;Q5T852_HUMAN_00025;PAPD1_HUMAN_00220 3708 WRQPPGKEIYRKS wildtype peptide Histone acetyltransferase KAT8 H3BMX5_HUMAN_00039;KAT8_HUMAN_00238 3709 GAKVEQKYLRQWF wildtype peptide Probable leucine--tRNA ligase, mitochondrial 3710 FNVTVTKTDKTLV wildtype peptide Profilin-1 3711 SNLALVKPEKTKA wildtype peptide Programmed cell death protein 5 3712 SMSKILKCAGNED wildtype peptide Proliferating cell nuclear antigen 3713 EPLKPLKIKLSVP wildtype peptide Proline-rich protein 12 A6NFN6_HUMAN_00406;PRR12_HUMAN_00405;PRR12_HUMAN_01226 3714 CYVKPTKNMSPKE wildtype peptide Protein Jade-3 3715 RRIDWEKLENREI wildtype peptide Protein kinase C alpha type 3716 EDFILHKMLGKGS wildtype peptide Protein kinase C theta type B4DF52_HUMAN_00259;H3BLZ9_HUMAN_00157;KPCT_HUMAN_00384 3717 IQVPGSKFHYVRL wildtype peptide Protein lin-54 homolog LIN54_HUMAN_00268;LIN54_HUMAN_00136 3718 RSLFVHKVDPRKD wildtype peptide Protein NipSnap homolog 1 F8WCR5_HUMAN_00051;H7C2U6_HUMAN_00068 3719 YYLKPSKMNEFLE wildtype peptide Protein NipSnap homolog 3A 3720 FAPAPKKGSKKAV wildtype peptide Putative histone H2B type 2-C Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 3721 FRLYTEKAYKTEM wildtype peptide DHX15 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 3722 KPEWLVKIAPQYY wildtype peptide DHX15 Acetylome - Acetyltransferase Microarray page 104 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B7Z4Q3_HUMAN_00188;B7Z500_HUMAN_00119;C9JWT3_HUMAN_00119;LC7L2_HUMAN_0012 3723 SAEVAAKAERVHE wildtype peptide Putative RNA-binding protein Luc7-like 2 1 3724 TELVTKKKPKAEG wildtype peptide Putative rRNA methyltransferase 3 3725 YDSMKGKGTRDKV wildtype peptide Annexin A2 AXA2L_HUMAN_00281;ANXA2_HUMAN_00299 3726 SKERLGKIVDRID wildtype peptide Reticulocalbin-1 E9PJD5_HUMAN_00086;E9PNT6_HUMAN_00086 3727 GSTEVGKLIKEAA wildtype peptide Retinal dehydrogenase 1 E7ER57_HUMAN_00177;H0Y4S2_HUMAN_00266 3728 SLDDVIKRANNTF wildtype peptide Retinal dehydrogenase 1 3729 LTREMIKHLERCE wildtype peptide Retinoblastoma-associated protein 3730 SLSLFYKKVYRLA wildtype peptide Retinoblastoma-associated protein 3731 AFPDPCKNIFSRF wildtype peptide Retinoid isomerohydrolase B7Z2F6_HUMAN_00450;B7Z959_HUMAN_00357;F5GZU3_HUMAN_00437;F5H0H3_HUMAN_0053 3732 SVVSFDKVKEPRK wildtype peptide Scaffold attachment factor B1 8;F5H1L1_HUMAN_00502 3733 DILSFDKIKEQRE wildtype peptide Scaffold attachment factor B2 3734 QVSEEVKTRHSEK wildtype peptide Secretogranin-1 B4DNE4_HUMAN_00131;E7EPK1_HUMAN_00185;E7ES33_HUMAN_00185;G3V1Q4_HUMAN_00 133;H0Y3Y4_HUMAN_00164;H0YFF6_HUMAN_00172;F5GZE5_HUMAN_00185;SEPT7_HUMAN_0 3735 MKRLHEKVNIIPL wildtype peptide Septin-7 0185 SEPT9_HUMAN_00413;SEPT9_HUMAN_00267;SEPT9_HUMAN_00180;SEPT9_HUMAN_00424;S 3736 LDIEFMKRLSKVV wildtype peptide Septin-9 EPT9_HUMAN_00412;SEPT9_HUMAN_00319;SEPT9_HUMAN_00207 3737 FYVYNKKKRLVNT wildtype peptide Serine beta-lactamase-like protein LACTB, mitochondrial 3738 VRRSSVKKIEKMK wildtype peptide SLIT-ROBO Rho GTPase-activating protein 2 H0Y2P8_HUMAN_00140;H0Y4C3_HUMAN_00086 3739 IEKMKEKRQAKYT wildtype peptide SLIT-ROBO Rho GTPase-activating protein 2 H0Y2P8_HUMAN_00148;H0Y4C3_HUMAN_00094 Small glutamine-rich tetratricopeptide repeat-containing protein 3740 RAAAYSKLGNYAG wildtype peptide alpha 3741 KPKEGVKTENNDH wildtype peptide Small ubiquitin-related modifier 2 H7BZT4_HUMAN_00011;SUMO2_HUMAN_00011 Q9HBD4_HUMAN_00188;F5H0X5_HUMAN_00188;SMCA4_HUMAN_00188;SMCA4_HUMAN_0018 3742 AQIMAYKMLARGQ wildtype peptide Transcription activator BRG1 8;SMCA4_HUMAN_00188;SMCA4_HUMAN_00188 SWI/SNF-related matrix-associated actin-dependent regulator of 3743 IQEAIKKPLTQKR wildtype peptide chromatin subfamily D member 2 B9EGA3_HUMAN_00149;SMRD2_HUMAN_00165;SMRD2_HUMAN_00138 3744 VKGFGGKFGVQTD wildtype peptide Src substrate cortactin SRC8_HUMAN_00235;SRC8_HUMAN_00235 3745 GFEYQGKTEKHAS wildtype peptide Src substrate cortactin H7C314_HUMAN_00126;SRC8_HUMAN_00144;SRC8_HUMAN_00144 3746 SSDIQVKELEKRA wildtype peptide Stathmin A2A2D0_HUMAN_00009;STMN1_HUMAN_00009 3747 EAQMAAKLERLRE wildtype peptide Stathmin STF1_HUMAN_00034;B4E2P3_HUMAN_00035;Q5T6F6_HUMAN_00034;H0Y328_HUMAN_00028 3748 LTCESCKGFFKRT wildtype peptide Nuclear receptor subfamily 5 group A member 2 H7BXD6_HUMAN_00027;NR5A2_HUMAN_00061;NR5A2_HUMAN_00107 3749 AIFSFGKKLIDEK wildtype peptide Sterol 26-hydroxylase, mitochondrial B3KUK2_HUMAN_00086;F5GYZ5_HUMAN_00155;F5H3C5_HUMAN_00086;F5H4R2_HUMAN_001 3750 GSFDKFKEKLTAA wildtype peptide Superoxide dismutase [Mn], mitochondrial 55;G8JLJ2_HUMAN_00047;SODM_HUMAN_00093 3751 RKKSGKKGQASLY wildtype peptide SWI/SNF complex subunit SMARCC1 3752 PSTPYTKSKRGHR wildtype peptide SWI/SNF complex subunit SMARCC2 F8VTJ5_HUMAN_00326;F8VXC8_HUMAN_00326;SMRC2_HUMAN_00326 3753 KLCFLDKVEPHAT wildtype peptide Trans-2,3-enoyl-CoA reductase A8MWU4_HUMAN_00666;SYNRG_HUMAN_00666;SYNRG_HUMAN_00666;SYNRG_HUMAN_007 3754 STAASTKYDVFRQ wildtype peptide Synergin gamma 44;SYNRG_HUMAN_00583 E7EQR6_HUMAN_00245;E7ERF2_HUMAN_00400;F5GZ03_HUMAN_00198;F5H282_HUMAN_001 3755 DALCVVKRVLESK wildtype peptide T-complex protein 1 subunit alpha 76 3756 CRILNEKVNTPTT wildtype peptide Threonine--tRNA ligase, cytoplasmic B4DEG8_HUMAN_00276;E7ERI3_HUMAN_00122;G3XAN9_HUMAN_00139 3757 ZZZMADKPDMGEI wildtype peptide Thymosin beta-10 3758 ETIEQEKRSEISZ wildtype peptide Thymosin beta-10 3759 KNPLPSKETIEQE wildtype peptide Thymosin beta-4 3760 PKTDSEKPFRGSQ wildtype peptide Thyroid hormone receptor-associated protein 3 Acetylome - Acetyltransferase Microarray page 105 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3761 STTGFDKSRLGTK wildtype peptide Thyroid hormone receptor-associated protein 3 3762 TLLEFLKRDKGET wildtype peptide Translation initiation factor eIF-2B subunit alpha B4DGX0_HUMAN_00035;F5H0D0_HUMAN_00022;H0YGG4_HUMAN_00051 3763 DITVESKRTIFLL wildtype peptide Translin-associated protein X E7ETY2_HUMAN_00155;E9PHK9_HUMAN_00155;TCOF_HUMAN_00155;TCOF_HUMAN_00155;T COF_HUMAN_00155;TCOF_HUMAN_00155;TCOF_HUMAN_00155;TCOF_HUMAN_00155;TCOF_ 3764 ANLLSGKSPRKSA wildtype peptide Treacle protein HUMAN_00155 E7ETY2_HUMAN_01414;E9PHK9_HUMAN_01451;TCOF_HUMAN_01337;TCOF_HUMAN_01415;T 3765 LGSQGAKDEPEEE wildtype peptide Treacle protein COF_HUMAN_01450;TCOF_HUMAN_01376;TCOF_HUMAN_01377;TCOF_HUMAN_01338 3766 AQRIVEKLEKSTK wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 3767 HGQVLCKKNKFGA wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 3768 FVKGYEKGQPDEE wildtype peptide Tyrosine--tRNA ligase, cytoplasmic 3769 TQHDSKKAGAEVV wildtype peptide Tyrosine--tRNA ligase, cytoplasmic 3770 QAFVIFKEVSSAT wildtype peptide U1 small nuclear ribonucleoprotein A C9J5L1_HUMAN_00105;C9JDJ7_HUMAN_00075;E7ET15_HUMAN_00105;E7EW00_HUMAN_0010 3771 KEQEELKKKEDEK wildtype peptide U2 snRNP-associated SURP motif-containing protein 5;H0Y8D9_HUMAN_00107;SR140_HUMAN_00105 3772 FNGITEKEYKTYK wildtype peptide U4/U6.U5 tri-snRNP-associated protein 2 B4DHT4_HUMAN_00325;B9A018_HUMAN_00428;G5E9H0_HUMAN_00428 3773 NGQLKNKYGDAFI wildtype peptide U6 snRNA-associated Sm-like protein LSm6 3774 LFIKPNKPVMAFG wildtype peptide UPF0708 protein C6orf162 3775 RAKILNKYGDMRR wildtype peptide Dedicator of cytokinesis protein 1 3776 MKSAPKKSKADGQ wildtype peptide Host cell factor 1 A6NEM2_HUMAN_02074;H7C1C4_HUMAN_00605;HCFC1_HUMAN_01960 3777 EVGQYLKKFRLFK wildtype peptide Putative peptidyl-tRNA hydrolase PTRHD1 B3KM87_HUMAN_00493;Q68E03_HUMAN_00267;A8MXP9_HUMAN_00879;MATR3_HUMAN_005 3778 PHYQKLKKFLNKL wildtype peptide Matrin-3 43 3779 EHGMPEKNPAEGN wildtype peptide PHD finger protein 20-like protein 1 3780 AELEQLKGQGKSR wildtype peptide Vimentin B0YJC4_HUMAN_00139;F5H288_HUMAN_00126 3781 KRTLLIKTVETRD wildtype peptide Vimentin 3782 GMTKMAKMIDERQ wildtype peptide Vinculin F5H7T3_HUMAN_00100;G8JLL3_HUMAN_00080;VINC_HUMAN_00173;VINC_HUMAN_00100 3783 YGFGLIKLDLKTK wildtype peptide Voltage-dependent anion-selective channel protein 1 C9JI87_HUMAN_00028;E7ER14_HUMAN_00028 3784 YGFGLIKLDLKEN wildtype peptide Voltage-dependent anion-selective channel protein 1 B4DKM5_HUMAN_00035;Q5JSD1_HUMAN_00074;Q5JSD2_HUMAN_00074;A2A3S1_HUMAN_00 3785 TLETKYKWCEYGL wildtype peptide Voltage-dependent anion-selective channel protein 2 089;VDAC2_HUMAN_00089;VDAC2_HUMAN_00063 3786 PKDNKRKMGETEA wildtype peptide hCG39525, isoform CRA_a 3787 KYDNSLKIISNAS wildtype peptide Glyceraldehyde-3-phosphate dehydrogenase E7EU54_HUMAN_00145;E7EUT4_HUMAN_00103;E7EUT5_HUMAN_00070 3788 RSYSPRKFKHRNR wildtype peptide NONE 3789 PAKKGEKIPKGKK wildtype peptide Protein HMGN2P42 Q68DV2_HUMAN_00191;E9PHY5_HUMAN_00191;E9PII3_HUMAN_00191;E9PK52_HUMAN_0019 3790 LEGGAAKRETKEV wildtype peptide Band 4.1-like protein 2 1;E9PPD9_HUMAN_00191;E41L2_HUMAN_00191 B7WNQ9_HUMAN_00245;C9JJR4_HUMAN_00245;H7C2C0_HUMAN_00010;GATA1_HUMAN_002 3791 RPLIRPKKRLIVS wildtype peptide Erythroid transcription factor 45;GATA1_HUMAN_00162 3792 ATHIARKAVELDL wildtype peptide Transcription initiation factor IIB 3793 VIDSIIKEKTVVY wildtype peptide Histidine ammonia-lyase F5GXF2_HUMAN_00158;F8W0V1_HUMAN_00068 3794 LQMDITKPVQIKD wildtype peptide Estradiol 17-beta-dehydrogenase 2 H3BNN1_HUMAN_00069;H3BRZ6_HUMAN_00017 3795 KECKEAKEVKDAE wildtype peptide Insulin receptor substrate 4 E7EVR3_HUMAN_00047;E9PF09_HUMAN_00194;F6SD09_HUMAN_00093;H0Y4W6_HUMAN_001 3796 RGGRMLKHKRQRD wildtype peptide Estrogen receptor 71;ESR1_HUMAN_00093;ESR1_HUMAN_00093 3797 NRKMSRKEKDERF wildtype peptide Translocon-associated protein subunit gamma A6NML8_HUMAN_00123;C9J6U3_HUMAN_00112;F5H7I1_HUMAN_00123;DIAP2_HUMAN_00123 3798 MNLNEEKKAPLRN wildtype peptide Protein diaphanous homolog 2 DIAP2_HUMAN_00112 3799 DETQDSKKKLGQI wildtype peptide Coiled-coil domain-containing protein 144A (Fragment) 3800 GKHMWTKKDAGKK wildtype peptide Cysteine and histidine-rich domain-containing protein 1 E9PHZ2_HUMAN_00032;CHRD1_HUMAN_00201 Acetylome - Acetyltransferase Microarray page 106 of 167

Sequence PEP_FLAG Protein name Uniprot IDs Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3- 3801 GLVKTWKTRWFTL wildtype peptide phosphoinositide 3802 EADSKLKQVYIPT wildtype peptide Metastasis-associated protein MTA2 3803 ELWNLLKIACSKV wildtype peptide Inhibitor of nuclear factor kappa-B kinase subunit beta B3KRB7_HUMAN_00436;IKKB_HUMAN_00657;IKKB_HUMAN_00600 3804 LPESRAKALFRQM wildtype peptide Testis-specific serine/threonine-protein kinase 3 3805 VKYQLEKTQRFLK wildtype peptide Double-strand break repair protein MRE11A B3KTC7_HUMAN_00483;F8W7U8_HUMAN_00480;MRE11_HUMAN_00480 3806 PSTSKSKGKSPHK wildtype peptide Dynein heavy chain 7, axonemal C9JUY3_HUMAN_00088;F8WAD4_HUMAN_00113;DYH7_HUMAN_00113 3807 AGCCLGKAVRGAK wildtype peptide Mothers against decapentaplegic homolog 7 3808 AVLLPKKTESHHH wildtype peptide Histone H2A type 1-A D6RAL1_HUMAN_00191;F5H687_HUMAN_00233;RRF2M_HUMAN_00233;RRF2M_HUMAN_0023 3809 GEAKTFKGVVDVV wildtype peptide Ribosome-releasing factor 2, mitochondrial 3;RRF2M_HUMAN_00233;RRF2M_HUMAN_00233 3810 TARLNRKQIPNDL wildtype peptide PiggyBac transposable element-derived protein 4 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 3811 FLGVRPKNQPIAT wildtype peptide specific NSD1_HUMAN_01817;NSD1_HUMAN_01983 B4E1M2_HUMAN_00094;E5RFU2_HUMAN_00094;E5RI53_HUMAN_00094;E7ETW9_HUMAN_000 3812 IKEIFDKAISARK wildtype peptide Epoxide hydrolase 2 94;G3V134_HUMAN_00028;H0YAW7_HUMAN_00094 3813 HLERMKKNMEQTI wildtype peptide Myosin-7 MYH6_HUMAN_01786;F5H4L2_HUMAN_01789 3814 TGARKWKDPLTQM wildtype peptide Cadherin-related family member 3 E7EQG5_HUMAN_00714;F5H0Z2_HUMAN_00802 3815 RPKVFRKLGNLAV wildtype peptide Alsin 3816 SARIAVKKAQLRS wildtype peptide Histone acetyltransferase KAT2B 3817 KLDGLIKETEENE wildtype peptide RB1-inducible coiled-coil protein 1 B4DX42_HUMAN_00102;C9JJE2_HUMAN_00191;SF01_HUMAN_00217;SF01_HUMAN_00217;SF0 3818 TMENVKKAVEQIR wildtype peptide Splicing factor 1 1_HUMAN_00217;SF01_HUMAN_00342;SF01_HUMAN_00217 C9JTS2_HUMAN_00361;E9PEW9_HUMAN_00361;E9PEX0_HUMAN_00255;H3BLV6_HUMAN_00 378;41_HUMAN_00361;41_HUMAN_00152;41_HUMAN_00152;41_HUMAN_00326;41_HUMAN_00 3819 LAPNQTKELEEKV wildtype peptide Protein 4.1 117;41_HUMAN_00361 ODF2L_HUMAN_00416;A6NH38_HUMAN_00416;E9PNP0_HUMAN_00217;G5E956_HUMAN_0041 6;H0YD68_HUMAN_00263;H0YEY6_HUMAN_00236;ODF2L_HUMAN_00416;ODF2L_HUMAN_003 3820 TLIEMYKTQVQKL wildtype peptide Outer dense fiber protein 2-like 87;ODF2L_HUMAN_00387;ODF2L_HUMAN_00256;ODF2L_HUMAN_00387 3821 RWLFDKKFLAEAA wildtype peptide Transmembrane protein 63B H0YCP6_HUMAN_00364;H3BLW6_HUMAN_00477;TM63B_HUMAN_00548 3822 CQKITCKGFKVEK wildtype peptide Zinc finger MYM-type protein 1 3823 VEAPSRKRKLSPG wildtype peptide Ataxin 7-like 2 A7E2D7_HUMAN_01421;EP400_HUMAN_01421;EP400_HUMAN_01384;EP400_HUMAN_01421;E 3824 ARPAAAKLKASRL wildtype peptide E1A-binding protein p400 P400_HUMAN_01420 E7ESW5_HUMAN_00026;E9PED6_HUMAN_00025;F8W9U9_HUMAN_00026;H0Y5T2_HUMAN_00 3825 CEVSKNKDGKEQS wildtype peptide Rho GTPase-activating protein 21 015;RHG21_HUMAN_00025 3826 RYNEAKKTLTELK wildtype peptide Coiled-coil domain-containing protein 93 3827 KKRLEEKNKKKTE wildtype peptide Microtubule-associated protein 9 A4QN19_HUMAN_01487;C9JVR0_HUMAN_00455;H0Y5S1_HUMAN_00227;SC16A_HUMAN_0191 3828 PGQAAKKETKEPK wildtype peptide Protein transport protein Sec16A 9;SC16A_HUMAN_01919;SC16A_HUMAN_01919;SC16A_HUMAN_01919 3829 SIMTDIKKDNRVT wildtype peptide Cytoplasmic dynein 2 heavy chain 1 3830 LTHSRKKPYVSKQ wildtype peptide Zinc finger protein 705F 3831 CVFPDKKSEGARI wildtype peptide Collagen alpha-1(V) chain 3832 RERAEKKKRATKT wildtype peptide Probable global transcription activator SNF2L1 E9PCY3_HUMAN_01018;SMCA1_HUMAN_01027 3833 ILNNHGKSKTCCE wildtype peptide Protein MB21D1 A6PW79_HUMAN_00392;M21D1_HUMAN_00392 3834 DIERYSKRYMKVY wildtype peptide DNA-directed RNA polymerase III subunit RPC7 D6R921_HUMAN_00089;D6R9U7_HUMAN_00089 3835 ASPQTAKPTAVPP wildtype peptide Cyclic nucleotide-gated cation channel beta-3 3836 SKNDDKKKDAKKI wildtype peptide Cylicin-1 3837 IQKSGTKKLKTET wildtype peptide Kinectin KTN1_HUMAN_00269;KTN1_HUMAN_00269 3838 KATSHYKPLDPNI wildtype peptide TPR and ankyrin repeat-containing protein 1 Acetylome - Acetyltransferase Microarray page 107 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3839 LSKTIGKANDVHS wildtype peptide Unconventional myosin-Vc 3840 KIREQEKKMWRQE wildtype peptide Golgin subfamily A member 6-like protein 1 H0YM25_HUMAN_00417;GG6L6_HUMAN_00451 3841 CGKGFAKQCKLTE wildtype peptide Zinc finger protein 786 ZN786_HUMAN_00436;H7BXP3_HUMAN_00350 3842 PKSSGSKDTQPRK wildtype peptide Serine/threonine-protein phosphatase 4 regulatory subunit 4 3843 EEEQAQKKARDML wildtype peptide WD repeat-containing protein 87 E7ESW6_HUMAN_01391;WDR87_HUMAN_01391 3844 VAYTEQKMTSGKI wildtype peptide Protein disulfide-isomerase A3 B3KQT9_HUMAN_00201;G5EA52_HUMAN_00206 3845 LSSDLVKHQRTHT wildtype peptide Zinc finger protein 48 3846 EWVTSPKPLDKPA wildtype peptide Putative protein FAM172B 3847 VLLSWTKKFKARG wildtype peptide Putative hexokinase HKDC1 HKDC1_HUMAN_00173;HKDC1_HUMAN_00173 3848 KHWTFEKVEKLWE wildtype peptide Proteasome activator complex subunit 4 F8WB44_HUMAN_00541;PSME4_HUMAN_00772;PSME4_HUMAN_00541 3849 DKTINSKAHAEQA wildtype peptide Bile acid-CoA:amino acid N-acyltransferase 3850 EWFDHDKVSQTKG wildtype peptide Protein KIAA1199 C9JCC4_HUMAN_00333;K1199_HUMAN_00333 Q5SZX6_HUMAN_00068;Q5SZX9_HUMAN_00044;E9PAQ6_HUMAN_00044;E9PRC8_HUMAN_00 3851 RTCLGPKSMMKML wildtype peptide T-complex protein 1 subunit gamma 044 3852 AKDQQQKAAQHHT wildtype peptide RNA-binding protein 28 3853 IQKTLFKIGYDYK wildtype peptide Long-chain-fatty-acid--CoA ligase 4 3854 LLADGSKVRAPYV wildtype peptide Immunoglobulin superfamily member 10 E9PFI7_HUMAN_00384;F5H3X8_HUMAN_00158;G5E9Z7_HUMAN_00158;G8JLJ9_HUMAN_0015 3855 TNLKPHKLLSRSY wildtype peptide Poly [ADP-ribose] polymerase 8 8;PARP8_HUMAN_00405 3856 FGPLPSKWQMASS wildtype peptide Tumor necrosis factor ligand superfamily member 18 3857 TNSKAQKKNRNKL wildtype peptide Glutamate [NMDA] receptor subunit epsilon-2 3858 KRENSRKPNLEKH wildtype peptide cDNA FLJ59639 3859 DSVTECKQPPVSS wildtype peptide A-kinase anchor protein SPHKAP 3860 TGEKPYKCNDCGR wildtype peptide Zinc finger protein 160 3861 LKDGEAKIKSDYA wildtype peptide V-type proton ATPase catalytic subunit A B7Z1R5_HUMAN_00563;B7Z2V6_HUMAN_00313 3862 RLPSKTKKEFVCK wildtype peptide Protein odd-skipped-related 1 3863 NAHQLFKGFSFVA wildtype peptide Ribosomal protein S6 kinase alpha-6 3864 TSSVLDKKEGEQA wildtype peptide Leucine-rich repeat-containing protein 8B G3V2D9_HUMAN_00008;G3V3C7_HUMAN_00008;G3V3M6_HUMAN_00008;G3V5D9_HUMAN_00 3865 ZPKRGKKGAVAED wildtype peptide DNA-(apurinic or apyrimidinic site) lyase 008;G3V5Q1_HUMAN_00008 3866 LGARKLKKLGNLK wildtype peptide Androgen receptor F5GZG9_HUMAN_00633;F5H341_HUMAN_00443;ANDR_HUMAN_00101 3867 KTTILYKLKLGQS wildtype peptide ADP-ribosylation factor 6 3868 TESKSKKSSSSTT wildtype peptide AT-rich interactive domain-containing protein 1A ARI1A_HUMAN_00997;ARI1A_HUMAN_00614 3869 VNKDIGKKLMSCP wildtype peptide Histone-lysine N-methyltransferase ASH1L 3870 QSMLFDKLITNTA wildtype peptide ATPase family AAA domain-containing protein 2 3871 RTKKAVKTVKKKD wildtype peptide Coiled-coil domain containing 7 (Fragment) 3872 GASKTGKKGKGSK wildtype peptide C-C motif chemokine 21 3873 AALAVLKSGNPRG wildtype peptide Cyclin-A2 3874 EELAAQKRQLENM wildtype peptide Cyclin-T1 B7Z1C9_HUMAN_00089;B8ZZC9_HUMAN_00175;F5GZK5_HUMAN_00117;TCPH_HUMAN_00013 3875 VAGVAFKKTFSYA wildtype peptide T-complex protein 1 subunit eta ;TCPH_HUMAN_00173;TCPH_HUMAN_00130 3876 TIKSPSKRELAKV wildtype peptide Cell division control protein 6 homolog 1433G_HUMAN_00050;1433Z_HUMAN_00049;1433F_HUMAN_00050;B4DE78_HUMAN_00050;B4 DHC4_HUMAN_00028;Q4VY19_HUMAN_00051;Q4VY20_HUMAN_00051;E7EX29_HUMAN_00049 ;A2IDB2_HUMAN_00037;E5RIR4_HUMAN_00049;E7ESK7_HUMAN_00049;E7EVZ2_HUMAN_000 3877 LLSVAYKNVVGAR wildtype peptide 14-3-3 protein beta/alpha 49;E9PD24_HUMAN_00049;1433B_HUMAN_00049 3878 HKKMKLKIGDPSL wildtype peptide 2-5A-dependent ribonuclease 3879 LAAEWGKYGMRFN wildtype peptide 2,4-dienoyl-CoA reductase, mitochondrial 3880 GSEFVQKYLGEGP wildtype peptide 26S protease regulatory subunit 6B 3881 VIKSYAKFSATPR wildtype peptide 26S protease regulatory subunit 7 Acetylome - Acetyltransferase Microarray page 108 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3882 SSSIVDKYIGESA wildtype peptide 26S protease regulatory subunit 10B H0YJC0_HUMAN_00206;H0YJS8_HUMAN_00167;H0YJX2_HUMAN_00009 3883 VKLAVLKYYKVDE wildtype peptide Ubiquitin-40S ribosomal protein S27a UBC_HUMAN_00007;RS27A_HUMAN_00007;RL40_HUMAN_00007;B2RDW1_HUMAN_00007;B4 DV12_HUMAN_00007;Q96C32_HUMAN_00007;F5GXK7_HUMAN_00007;F5GYU3_HUMAN_00007 ;F5GYX6_HUMAN_00007;F5GZ39_HUMAN_00007;F5H041_HUMAN_00007;F5H265_HUMAN_000 07;F5H2Z3_HUMAN_00007;F5H388_HUMAN_00007;F5H4D8_HUMAN_00007;F5H6Q2_HUMAN_0 3884 ZMQIFVKTLTGKT wildtype peptide Polyubiquitin-B 0007;F5H747_HUMAN_00007;F5H7K6_HUMAN_00007;F5H7Y5_HUMAN_00007 E9PL09_HUMAN_00062;E9PJH4_HUMAN_00062;E9PK82_HUMAN_00062;E9PL45_HUMAN_0006 2;E9PPU1_HUMAN_00062;E9PQ96_HUMAN_00062;F2Z2S8_HUMAN_00062;H0YCJ7_HUMAN_00 3885 QNVLGEKGRRIRE wildtype peptide 40S ribosomal protein S3 059;H0YF32_HUMAN_00052 D6RAS7_HUMAN_00107;D6RAT0_HUMAN_00107;D6RB09_HUMAN_00107;D6RG13_HUMAN_00 124;E9PFI5_HUMAN_00144;F5H4F9_HUMAN_00131;H0Y8L7_HUMAN_00139;D6R9B6_HUMAN_0 3886 FCVGFTKKRNNQI wildtype peptide 40S ribosomal protein S3a 0025;H0Y9Y4_HUMAN_00088 3887 PEEAKYKLCKVRK wildtype peptide 40S ribosomal protein S4, X isoform 3888 LRTFYEKRMATEV wildtype peptide 40S ribosomal protein S6 3889 RKAVIVKNIDDGT wildtype peptide 60S ribosomal protein L27 3890 DKTVVNKDVFRDP wildtype peptide 60S ribosomal protein L27 3891 HMIRKNKYRPDLR wildtype peptide 60S ribosomal protein L28 E9PB24_HUMAN_00101;H0YKD8_HUMAN_00101;RL28_HUMAN_00101 3892 LEKIDLKFIDTTS wildtype peptide 60S ribosomal protein L3 F2Z3A5_HUMAN_00317;G5E9G0_HUMAN_00314 3893 IVYLYTKKVGKAP wildtype peptide 60S ribosomal protein L34 3894 RDLRGKKKEELLK wildtype peptide 60S ribosomal protein L35 F2Z388_HUMAN_00013;H0Y3A0_HUMAN_00013 ACTA_HUMAN_00330;ACTG_HUMAN_00328;ACTH_HUMAN_00329;ACTC_HUMAN_00330;ACTS _HUMAN_00330;ACTBL_HUMAN_00329;B4DUI8_HUMAN_00285;B4DW52_HUMAN_00300;B4E33 5_HUMAN_00304;Q5T8M7_HUMAN_00295;Q5T8M8_HUMAN_00240;A6NL76_HUMAN_00242;E7E QV5_HUMAN_00207;E9PG30_HUMAN_00286;F5GYT4_HUMAN_00247;F5H0N0_HUMAN_00286; 3895 PSTMKIKIIAPPE wildtype peptide Actin, cytoplasmic 1 F5H1C1_HUMAN_00295 3896 ZZZZMAKWGEGDP wildtype peptide Activator of 90 kDa heat shock protein ATPase homolog 1 B4DUR9_HUMAN_00007;G3V3W9_HUMAN_00007 B7TY16_HUMAN_00095;G3V2E8_HUMAN_00030;G3V2N5_HUMAN_00074;G3V2W4_HUMAN_00 030;G3V2X9_HUMAN_00030;G3V5M4_HUMAN_00072;H9KV75_HUMAN_00030;ACTN1_HUMAN_ 3897 KISNVNKALDFIA wildtype peptide Alpha-actinin-1 00095;ACTN1_HUMAN_00095 3898 VLKLYDKIDPEKL wildtype peptide Acyl carrier protein, mitochondrial 3899 FREYWNKPEETKS wildtype peptide Acyl-CoA synthetase family member 3, mitochondrial F5H362_HUMAN_00174;F5H5A1_HUMAN_00174;F5H755_HUMAN_00174 3900 MKAYINKVEELKK wildtype peptide Acyl-CoA-binding protein ACBP_HUMAN_00094;ACBP_HUMAN_00078;ACBP_HUMAN_00119;ACBP_HUMAN_00138 AK1C3_HUMAN_00207;AK1C2_HUMAN_00207;AK1C1_HUMAN_00207;B4DK69_HUMAN_00181; 3901 KLLDFCKSKDIVL wildtype peptide Aldo-keto reductase family 1 member C4 B5ME26_HUMAN_00148;H0Y804_HUMAN_00174

3902 PDRPWAKPEDPSL wildtype peptide Aldo-keto reductase family 1 member B10 ALDR_HUMAN_00222;AK1BF_HUMAN_00250;E9PCX2_HUMAN_00222;AK1BF_HUMAN_00222 3903 GCKFQFKPIRVSE wildtype peptide Probable alpha-ketoglutarate-dependent dioxygenase ABH5 F5H6G2_HUMAN_00224;ALKB5_HUMAN_00235 3904 RDLQGGKAFGLLK wildtype peptide Allograft inflammatory factor 1 3905 AILAIHKEAQRIA wildtype peptide Alpha-actinin-4 D6PXK4_HUMAN_00373;F5GXS2_HUMAN_00202;H7C144_HUMAN_00028 3906 VRSDRDKFVIFLD wildtype peptide Alpha-crystallin A chain E7EWH7_HUMAN_00050;E9PHE4_HUMAN_00033 B7Z582_HUMAN_00292;A6NN80_HUMAN_00418;E5RK69_HUMAN_00211;E7EMC6_HUMAN_000 3907 DLMTDLKSEISGD wildtype peptide Annexin A6 75;E9PGK1_HUMAN_00386 B7Z582_HUMAN_00316;A6NN80_HUMAN_00442;E5RK69_HUMAN_00235;E7EMC6_HUMAN_000 3908 PAHYDAKQLKKAM wildtype peptide Annexin A6 99;E9PGK1_HUMAN_00410 3909 LKISLGKVGVKEE wildtype peptide Antigen KI-67 F5H4V4_HUMAN_02004;KI67_HUMAN_01645 B3KXW5_HUMAN_00167;B4DGE1_HUMAN_00144;E7EUH1_HUMAN_00226;F5GZV5_HUMAN_00 015;H3BNR4_HUMAN_00144;H3BR36_HUMAN_00144;H3BUN9_HUMAN_00144;AP1G1_HUMAN 3910 LAGEVEKLLKTSN wildtype peptide AP-1 complex subunit gamma-1 _00144 3911 KRPEILKQEIKVF wildtype peptide AP-2 complex subunit beta Q7Z451_HUMAN_00261;F5GYG9_HUMAN_00055;AP2B1_HUMAN_00318 Acetylome - Acetyltransferase Microarray page 109 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 3912 AYNTKDKIGVELT wildtype peptide Apolipoprotein B-100 C0JYY2_HUMAN_02004;F5H109_HUMAN_02004 3913 QVDAEEKEDVKSC wildtype peptide ATP synthase subunit d, mitochondrial 3914 ETKLDKKKYPYWP wildtype peptide ATP synthase subunit d, mitochondrial 3915 AAVTYSKPRLATF wildtype peptide ATP synthase subunit g, mitochondrial 3916 SLALYEKADIKGP wildtype peptide ATP synthase subunit gamma, mitochondrial B4DL14_HUMAN_00032;ATPG_HUMAN_00079 3917 RSVISYKTEEKPI wildtype peptide ATP synthase subunit gamma, mitochondrial B4DL14_HUMAN_00150;ATPG_HUMAN_00197 3918 ATLSELKTVLKSF wildtype peptide ATP synthase subunit O, mitochondrial Q5SV16_HUMAN_00154;E9PDY1_HUMAN_00168;G3V1I6_HUMAN_00412;H0Y2W2_HUMAN_004 3919 VRMYFDKYVLKPA wildtype peptide ATPase family AAA domain-containing protein 3A 77;ATD3A_HUMAN_00491 3920 LNEYVLKPATEGK wildtype peptide ATPase family AAA domain-containing protein 3C 3921 GPPPYGKRAPSPG wildtype peptide Atrophin-1 B5ME99_HUMAN_00137;C9K0G3_HUMAN_00137;E9PKJ9_HUMAN_00100;BCL9L_HUMAN_0013 3922 SLDSEAKEVAPRS wildtype peptide B-cell CLL/lymphoma 9-like protein 2;BCL9L_HUMAN_00137;BCL9L_HUMAN_00137 3923 NVKALQKSPGPQR wildtype peptide Serine/threonine-protein kinase B-raf E41L3_HUMAN_00405;A8K968_HUMAN_00296;Q68DV2_HUMAN_00514;E9PHY5_HUMAN_0051 4;E9PII3_HUMAN_00514;E9PK52_HUMAN_00514;E9PPD9_HUMAN_00514;F5GX05_HUMAN_004 3924 FLTLGSKFRYSGR wildtype peptide Band 4.1-like protein 2 05;E41L2_HUMAN_00514;E41L3_HUMAN_00405;E41L3_HUMAN_00405 3925 QPLVVVKEEKIHS wildtype peptide Bromodomain-containing protein 4 3926 GVGGQEKHAPLAD wildtype peptide Bystin 3927 LSSFVTKGYRTRR wildtype peptide CAD protein F8VPD4_HUMAN_01348;H7C3Z5_HUMAN_00056 3928 GFFGIYKGAKACF wildtype peptide Calcium-binding mitochondrial carrier protein Aralar2 F5GX33_HUMAN_00376;CMC2_HUMAN_00485 3929 ADFGLSKIVEHQV wildtype peptide Calcium/calmodulin-dependent protein kinase type IV 3930 SFDLLVKNLNGKS wildtype peptide Calcyclin-binding protein B3KSF1_HUMAN_00091;Q5R370_HUMAN_00075 3931 AIHFYNKSLAEHR wildtype peptide Stress-induced-phosphoprotein 1 F5H0T1_HUMAN_00301;G3XAD8_HUMAN_00372 cDNA FLJ76863, highly similar to Homo sapiens stress-induced- 3932 HYTEAIKRNLKDA wildtype peptide phosphoprotein 1 (Hsp70/Hsp90-organizing protein)

3933 NQDHDLKPLGPKS wildtype peptide FYN-binding protein B4DLN2_HUMAN_00159;D6RFJ5_HUMAN_00149;F5H8I8_HUMAN_00149;FYB_HUMAN_00149 3934 GKRFTNKPYLTSH wildtype peptide Replication initiator 1 C9J3L7_HUMAN_00333;C9JYJ8_HUMAN_00336;C9JZE3_HUMAN_00335

3935 VLCALAKKHKRTP wildtype peptide Aldo-keto reductase family 1 member C3 AK1C2_HUMAN_00246;AK1C1_HUMAN_00246;B4DK69_HUMAN_00220;H0Y804_HUMAN_00213 H33_HUMAN_00057;H31T_HUMAN_00057;H3C_HUMAN_00056;H32_HUMAN_00057;B4DEB1_H 3936 EIRRYQKSTELLI wildtype peptide Histone H3.1 UMAN_00057;Q5TEC6_HUMAN_00057 3937 KYIQQTKPLTLER wildtype peptide Cleavage and polyadenylation specificity factor subunit 5 3938 TDKTLVKEVVQNF wildtype peptide Coactosin-like protein 3939 VAHFLEKQGFKQQ wildtype peptide Coatomer subunit beta COF2_HUMAN_00019;E9PK25_HUMAN_00057;E9PP50_HUMAN_00019;E9PS23_HUMAN_00019; 3940 KVFNDMKVRKSST wildtype peptide Cofilin-1 F8WDN3_HUMAN_00019 COF2_HUMAN_00092;E9PK25_HUMAN_00130;E9PP50_HUMAN_00092;E9PQB7_HUMAN_00075 3941 DATYETKESKKED wildtype peptide Cofilin-1 ;G3V1A4_HUMAN_00075;G3V5P4_HUMAN_00075 3942 TTGRLEKHLDALL wildtype peptide Cohesin subunit SA-2 F8WAK8_HUMAN_00538;STAG2_HUMAN_00607 3943 RLEEVAKRNSLKE wildtype peptide Cytochrome b5 type B D6RFH4_HUMAN_00030;H3BQB8_HUMAN_00030;H3BUX2_HUMAN_00030 3944 RCGAHYKLVPQQL wildtype peptide Cytochrome c oxidase subunit 5B, mitochondrial 3945 ITGALFKHSKKGP wildtype peptide Cytochrome P450 1A2 3946 KYDSWHKEVLSKF wildtype peptide Cytoplasmic dynein 1 heavy chain 1 CYFP2_HUMAN_01221;A8MUM2_HUMAN_01060;E7EQ04_HUMAN_01199;E7EVF4_HUMAN_011 96;E7EVJ5_HUMAN_01170;E7EW33_HUMAN_01000;E7EWA4_HUMAN_01221;F5H583_HUMAN_ 01121;H7C229_HUMAN_00895;CYFP1_HUMAN_00766;CYFP1_HUMAN_00391;CYFP2_HUMAN_ 3947 GKDEIIKNVPLKK wildtype peptide Cytoplasmic FMR1-interacting protein 1 01196 3948 IGFLNDKVEERRE wildtype peptide Cytosolic 5-nucleotidase III-like protein Acetylome - Acetyltransferase Microarray page 110 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B4DF41_HUMAN_00070;F5H769_HUMAN_00068;E7ER38_HUMAN_00070;F8W7G9_HUMAN_000 3949 ASPPKAKNLNGGL wildtype peptide DNA mismatch repair protein Msh6 70;F8WAX8_HUMAN_00070;MSH6_HUMAN_00070 D3DN91_HUMAN_00670;E9PCQ2_HUMAN_01126;F5H696_HUMAN_00613;DPOLQ_HUMAN_001 3950 SIFRARKRASLDI wildtype peptide DNA polymerase theta 62 3951 RSEYVEKFYRIKK wildtype peptide DNA repair protein RAD50 RAD50_HUMAN_01291;RAD50_HUMAN_01146 3952 VSAAFMKKYIHVA wildtype peptide DNA replication licensing factor MCM3 Q7Z6P5_HUMAN_00064;E9PF11_HUMAN_00066 3953 AKSQLLKFVEKCS wildtype peptide DNA replication licensing factor MCM5 B1AHB1_HUMAN_00349;E7EQY5_HUMAN_00301 3954 KKRIIEKVIHRLT wildtype peptide DNA replication licensing factor MCM6 3955 RKAFGEKTIVPWK wildtype peptide E3 ubiquitin-protein ligase CBL 3956 QRVKFTKDHLIRK wildtype peptide E3 ubiquitin-protein ligase TRIM33 3957 NLQHSKKGKTAQG wildtype peptide E3 ubiquitin-protein ligase TRIM33 E7EN20_HUMAN_00583;H0Y612_HUMAN_00712;TRI33_HUMAN_00951 3958 WHNNVEKTLPSTK wildtype peptide E3 ubiquitin/ISG15 ligase TRIM25 B4DE23_HUMAN_00007;B4DNU6_HUMAN_00188;B7ZAY3_HUMAN_00007;F5GXL2_HUMAN_003 3959 MPSVFGKENKKKQ wildtype peptide EH domain-containing protein 2 24;F5H1J1_HUMAN_00123;F5H559_HUMAN_00314 Electron transfer flavoprotein-ubiquinone oxidoreductase, 3960 REFQRWKHHPSIR wildtype peptide mitochondrial 3961 KGRFQQKQIENVL wildtype peptide Eukaryotic translation initiation factor 2 subunit 2 B4DV79_HUMAN_00133;C9JZG1_HUMAN_00170;F8W8C8_HUMAN_00209;EIF3B_HUMAN_0020 3962 LKNVIHKIFSKFG wildtype peptide Eukaryotic translation initiation factor 3 subunit B 9 B4DV79_HUMAN_00137;C9JZG1_HUMAN_00174;F8W8C8_HUMAN_00213;EIF3B_HUMAN_0021 3963 IHKIFSKFGKITN wildtype peptide Eukaryotic translation initiation factor 3 subunit B 3 B0QY90_HUMAN_00347;B3KNG0_HUMAN_00178;B0QY89_HUMAN_00488;G8JLH4_HUMAN_003 3964 PFLQQLKVFSDEV wildtype peptide Eukaryotic translation initiation factor 3 subunit L 97 3965 TSTRIGKFEARFF wildtype peptide Eukaryotic translation initiation factor 3 subunit I D3DNT2_HUMAN_01189;E7EUU4_HUMAN_01149;E7EX73_HUMAN_01025;E9PFM1_HUMAN_01 195;E9PGM1_HUMAN_01102;G5E9S1_HUMAN_00993;IF4G1_HUMAN_01148;IF4G1_HUMAN_01 3966 TKRSFSKEVEERS wildtype peptide Eukaryotic translation initiation factor 4 gamma 1 101;IF4G1_HUMAN_01024;IF4G1_HUMAN_00992 3967 VGGRYLKGDHAGV wildtype peptide Fascin 3968 FFGVHPKQAHTMD wildtype peptide Fatty acid synthase 3969 KEGVFAKEVRTGG wildtype peptide Fatty acid synthase 3970 RYMAQGKHIGKVV wildtype peptide Fatty acid synthase 3971 KTPDAMKAAMALE wildtype peptide Ferritin light chain A6NDY9_HUMAN_00477;Q5HY54_HUMAN_00504;F8WE98_HUMAN_00477;FLNA_HUMAN_0050 3972 KETADFKVYTKGA wildtype peptide Filamin-A 4 3973 NAAIIMKVDKDRQ wildtype peptide Glia maturation factor gamma B7Z3X4_HUMAN_00064;D6R9P4_HUMAN_00064;D6R917_HUMAN_00064;D6RAY7_HUMAN_000 3974 NGDLSFKYVKTFN wildtype peptide Glucosamine-6-phosphate isomerase 1 64;D6RB13_HUMAN_00064;D6RFF8_HUMAN_00085 E7EM57_HUMAN_00172;E7EUI8_HUMAN_00172;E9PD92_HUMAN_00171;E9PDV8_HUMAN_001 3975 NRIIVEKPFGRDL wildtype peptide Glucose-6-phosphate 1-dehydrogenase 71;G6PD_HUMAN_00171;G6PD_HUMAN_00201 3976 EADELMKRVGFQY wildtype peptide Glucose-6-phosphate 1-dehydrogenase G6PD_HUMAN_00543;G6PD_HUMAN_00527 3977 ASIVEDKLVEDLR wildtype peptide Glutamate dehydrogenase 1, mitochondrial DHE4_HUMAN_00415;B3KV55_HUMAN_00248;B4DGN5_HUMAN_00282;F5GYQ4_HUMAN_0034 3978 TTPEADKIFLERN wildtype peptide Glutamate dehydrogenase 1, mitochondrial 7;F8WA20_HUMAN_00372;H0YFJ0_HUMAN_00114 3979 KPPVAAKPVIPRK wildtype peptide HCLS1-binding protein 3 HSP76_HUMAN_00502;B4DHP5_HUMAN_00478;E7EP94_HUMAN_00409;E7EQL7_HUMAN_0042 2;F5GZ62_HUMAN_00483;F5H1D3_HUMAN_00482;F8VZJ4_HUMAN_00477;H0YG33_HUMAN_00 3980 STGKANKITITND wildtype peptide Heat shock 70 kDa protein 1A/1B 567;Q5SP16_HUMAN_00335 Acetylome - Acetyltransferase Microarray page 111 of 167

Sequence PEP_FLAG Protein name Uniprot IDs HSP76_HUMAN_00321;HS71L_HUMAN_00321;HSP72_HUMAN_00322;B3KUS2_HUMAN_00096; B4DHP5_HUMAN_00297;B4DXY3_HUMAN_00321;Q53FA3_HUMAN_00321;E7EP94_HUMAN_002 28;E7EQL7_HUMAN_00241;F5GZ62_HUMAN_00302;F5H1D3_HUMAN_00301;F8VZJ4_HUMAN_0 0296;F8W1P1_HUMAN_00321;F8WEE3_HUMAN_00266;H0YG33_HUMAN_00386;Q5SP16_HUMA 3981 TLEPVEKALRDAK wildtype peptide Heat shock 70 kDa protein 1A/1B N_00154;HSP77_HUMAN_00321 HS105_HUMAN_00272;B4DY72_HUMAN_00091;B4DYH1_HUMAN_00274;D6RJ96_HUMAN_0023 1;E7ES43_HUMAN_00303;E7EUG1_HUMAN_00323;E9PDE8_HUMAN_00246;HS105_HUMAN_00 3982 LYQECEKLKKLMS wildtype peptide Heat shock 70 kDa protein 4L 272;HS105_HUMAN_00231 A8K7Q2_HUMAN_00083;E7ET08_HUMAN_00319;E9PKE3_HUMAN_00300;E9PN89_HUMAN_002 3983 TLDPVEKALRDAK wildtype peptide Heat shock cognate 71 kDa protein 59;E9PNE6_HUMAN_00173;HSP7C_HUMAN_00319 A8K7Q2_HUMAN_00353;E9PKE3_HUMAN_00570;E9PM13_HUMAN_00141;E9PNE6_HUMAN_00 3984 KNQTAEKEEFEHQ wildtype peptide Heat shock cognate 71 kDa protein 443;E9PS65_HUMAN_00180 HNRPQ_HUMAN_00100;Q2L7G6_HUMAN_00103;E7ERE4_HUMAN_00103;F6UXX1_HUMAN_001 00;HNRPR_HUMAN_00103;HNRPQ_HUMAN_00100;HNRPQ_HUMAN_00100;HNRPQ_HUMAN_0 3985 FLCGVMKTYRQRE wildtype peptide Heterogeneous nuclear ribonucleoprotein R 0100 3986 PAAGDGKTEQKGG wildtype peptide Heterogeneous nuclear ribonucleoprotein U 3987 KTTWVTKHAAENP wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00441;HNRPU_HUMAN_00497 3988 KAEVEGKDLPEHA wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00551;HNRPU_HUMAN_00607 3989 NEEISVKHLPSTE wildtype peptide Heterogeneous nuclear ribonucleoprotein U-like protein 1 B7Z4B8_HUMAN_00181;HNRL1_HUMAN_00270;HNRL1_HUMAN_00170 3990 HAVLKMKGNFTLP wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00562;HNRPU_HUMAN_00618 B3KRS5_HUMAN_00045;E5RFI6_HUMAN_00045;E5RFP9_HUMAN_00082;E5RG37_HUMAN_000 45;E5RGV4_HUMAN_00045;E5RH52_HUMAN_00045;E5RHE7_HUMAN_00045;E5RJ04_HUMAN_ 3991 HSDEYIKFLRSIR wildtype peptide Histone deacetylase 2 00045;E5RK19_HUMAN_00045;H3BM24_HUMAN_00065 3992 IKSLVSKGTLVQT wildtype peptide Histone H1.1 3993 LKSLVSKGTLVQT wildtype peptide Histone H1.4 H15_HUMAN_00093;H13_HUMAN_00091;H12_HUMAN_00090 3994 PKAAKPKAAKPKA wildtype peptide Histone H1.5 3995 KKNQPGKYSQLVV wildtype peptide Histone H1x 3996 KKDKGGKAKKTAA wildtype peptide Histone H1x 3997 NIQGITKPAIRRL wildtype peptide Histone H4 3998 ZZZMASKEMFEDT wildtype peptide Histone-binding protein RBBP7 E9PQG7_HUMAN_01133;E9PR05_HUMAN_01166;H7C5W4_HUMAN_00211;MLL1_HUMAN_0113 3999 PPIKPIKPVTRNK wildtype peptide Histone-lysine N-methyltransferase MLL 3 4000 SLGLGLKPGQSMM wildtype peptide Histone-lysine N-methyltransferase MLL2 4001 PVTTWEKGKGSEV wildtype peptide Histone-lysine N-methyltransferase MLL2 4002 DGAILGKLYKIPE wildtype peptide Histone-lysine N-methyltransferase MLL3 MLL3_HUMAN_00569;MLL3_HUMAN_01508 4003 YFSEADKIKVAQG wildtype peptide Inosine-5-monophosphate dehydrogenase 2 4004 YKIVPIKDIRNLY wildtype peptide Insulin-degrading enzyme B4DM87_HUMAN_00445;C9IYS7_HUMAN_00376;G3V1S5_HUMAN_00480;INT11_HUMAN_00373 4005 GLLPEAKKPRLLH wildtype peptide Integrator complex subunit 11 INT11_HUMAN_00452 Q6IAS7_HUMAN_00075;D6R9N5_HUMAN_00075;D6RB08_HUMAN_00075;D6RB34_HUMAN_000 4006 VDKPDPKTWKANF wildtype peptide Interferon regulatory factor 2 75;D6RCK5_HUMAN_00075 B4DFG4_HUMAN_00264;C9JFV5_HUMAN_00460;G5E9M5_HUMAN_00460;ILF3_HUMAN_00460; 4007 KLHVAVKVLQDMG wildtype peptide Interleukin enhancer-binding factor 3 LF3_HUMAN_00460;ILF3_HUMAN_00460;ILF3_HUMAN_00460;ILF3_HUMAN_00460 B4DEY9_HUMAN_00898;B4DPW7_HUMAN_00863;E7EQF4_HUMAN_01014;E9PDG2_HUMAN_0 0812;G3XAB1_HUMAN_01072;H7C3C0_HUMAN_00871;IF122_HUMAN_01022;IF122_HUMAN_00 4008 ARHAYDKLRGLYI wildtype peptide Intraflagellar transport protein 122 homolog 962;IF122_HUMAN_00911 E9PH51_HUMAN_00007;F5GXH2_HUMAN_00007;F5GXY2_HUMAN_00007;F5GYU2_HUMAN_00 007;F5GZQ4_HUMAN_00007;F5H308_HUMAN_00007;F5H5J4_HUMAN_00007;F5H6W8_HUMAN_ 00007;F5GWW2_HUMAN_00007;F5GXC7_HUMAN_00007;F5GXU1_HUMAN_00007;F5H8H6_HU MAN_00007;LDHA_HUMAN_00007;LDHA_HUMAN_00036;LDHA_HUMAN_00007;LDHA_HUMAN_ 4009 ZZMATLKDQLIYN wildtype peptide L-lactate dehydrogenase A chain 00007 Acetylome - Acetyltransferase Microarray page 112 of 167

Sequence PEP_FLAG Protein name Uniprot IDs E9PH51_HUMAN_00091;F5GXY2_HUMAN_00118;F5GYU2_HUMAN_00118;F5H308_HUMAN_000 4010 RNVNIFKFIIPNV wildtype peptide L-lactate dehydrogenase A chain 90;LDHA_HUMAN_00118;LDHA_HUMAN_00147;LDHA_HUMAN_00118

4011 EEARLKKSADTLW wildtype peptide L-lactate dehydrogenase A chain E9PH51_HUMAN_00291;F5H308_HUMAN_00290;LDHA_HUMAN_00347;LDHA_HUMAN_00260 4012 VDVLEDKLKGEMM wildtype peptide L-lactate dehydrogenase B chain A8MW50_HUMAN_00058;C9J7H8_HUMAN_00058;F5H793_HUMAN_00058 4013 VLEDKLKGEMMDL wildtype peptide L-lactate dehydrogenase B chain A8MW50_HUMAN_00060;C9J7H8_HUMAN_00060;F5H793_HUMAN_00060 4014 KTQQASKHIRFSE wildtype peptide La-related protein 7 4015 LNSSTGKTENGLK wildtype peptide Lysine-specific demethylase 3A F5H070_HUMAN_00843;F5H4E6_HUMAN_00895 4016 MVEELEKALGMKL wildtype peptide Lysine--tRNA ligase 4017 EAKSFLKGLSDKQ wildtype peptide O-acetyl-ADP-ribose deacetylase MACROD1 4018 TVTKFDKQGNVTS wildtype peptide Magnesium transporter MRS2 homolog, mitochondrial MRS2_HUMAN_00093;H7BZ29_HUMAN_00045;MRS2_HUMAN_00093;MRS2_HUMAN_00093

4019 ALDKYAKKSVKVI wildtype peptide Malate dehydrogenase, cytoplasmic F5H098_HUMAN_00139;C9JF79_HUMAN_00139;C9JRL4_HUMAN_00076;MDHC_HUMAN_00032 4020 AGTEVVKAKAGAG wildtype peptide Malate dehydrogenase, mitochondrial E9PDB2_HUMAN_00197;G3XAL0_HUMAN_00132 4021 AVELNPKYVKALF wildtype peptide Mitochondrial import receptor subunit TOM70

B8ZZQ7_HUMAN_00352;B9A067_HUMAN_00404;C9J406_HUMAN_00352;F5GZ32_HUMAN_0044 4022 FDSAVAKALEHHR wildtype peptide Mitochondrial inner membrane protein 0;F8W9I1_HUMAN_00419;H7C463_HUMAN_00306;IMMT_HUMAN_00440;IMMT_HUMAN_00419 4023 YTGGIAKLERDMS wildtype peptide Mitochondrial-processing peptidase subunit alpha B4DKL3_HUMAN_00168;Q5SXN9_HUMAN_00007 4024 LAYLHTKGKMHRD wildtype peptide Mitogen-activated protein kinase kinase kinase kinase 5 4025 FKPLNDKNSNSGN wildtype peptide MKL/myocardin-like protein 2 E9PDQ4_HUMAN_00081;F8W9Y2_HUMAN_00453;H0Y746_HUMAN_00071;MMS19_HUMAN_003 4026 YRLSFLKEDSQSC wildtype peptide MMS19 nucleotide excision repair protein homolog 98 4027 LAKLKNKHEAMIT wildtype peptide Myosin-9 4028 SQRHEEKVAAYDK wildtype peptide Myosin-9 4029 SACNLEKKQKKFD wildtype peptide Myosin-9 4030 EFMWALKNGDLDE wildtype peptide Myotrophin 4031 GRSLSLKLIQQLR wildtype peptide N-acetyltransferase 10 E7ESU4_HUMAN_00354;E9PMN9_HUMAN_00018 4032 NDKFYRKFGFEII wildtype peptide Isoform 2 of N-alpha-acetyltransferase 50 4033 AENGETKTEESPA wildtype peptide Non-histone chromosomal protein HMG-14 A6NEL0_HUMAN_00098;A6NL93_HUMAN_00072;H0Y419_HUMAN_00072

4034 ZZMQSNKTFNLEK wildtype peptide Non-POU domain-containing octamer-binding protein C9IZL7_HUMAN_00007;C9J4X2_HUMAN_00007;C9JJ13_HUMAN_00007;C9JYS8_HUMAN_00007 4035 AEFAPNKRRRYZZ wildtype peptide Non-POU domain-containing octamer-binding protein C9IZL7_HUMAN_00109;C9JYS8_HUMAN_00109;F5GYZ3_HUMAN_00020;H7C367_HUMAN_0002 4036 VFIHKDKGFGFIR wildtype peptide Non-POU domain-containing octamer-binding protein 8 B4DHP6_HUMAN_00102;E9PLD1_HUMAN_00183;H0YCB0_HUMAN_00158;A6NM69_HUMAN_00 4037 KIEHFAKIGWKNH wildtype peptide Non-specific lipid-transfer protein 139;C9JC79_HUMAN_00159;NLTP_HUMAN_00139 B4DHP6_HUMAN_00372;A6NM69_HUMAN_00409;C9JC79_HUMAN_00429;E1B6W5_HUMAN_00 4038 EGEQFVKKIGGIF wildtype peptide Non-specific lipid-transfer protein 046;H0YF61_HUMAN_00068;NLTP_HUMAN_00049 4039 ARTLLAKNLPYKV wildtype peptide Nucleolin 4040 SKTLFVKGLSEDT wildtype peptide Nucleolin Q9BQ02_HUMAN_00349;E7EX81_HUMAN_00469;H7BY16_HUMAN_00202 4041 APGGGSKVPQKKV wildtype peptide Nucleophosmin E5RI98_HUMAN_00086;NPM_HUMAN_00150;NPM_HUMAN_00150 4042 LPKVEAKFINYVK wildtype peptide Nucleophosmin 4043 ASFNFGKKVDSSV wildtype peptide Nuclear pore complex protein Nup50 B4E2D3_HUMAN_00025;NUP50_HUMAN_00247 4044 AVEELHKLLKEAG wildtype peptide Nucleoprotein TPR 4045 ISLSDYKGKYVVF wildtype peptide Peroxiredoxin-1 4046 NLAELFKGKKGVL wildtype peptide Peroxiredoxin-5, mitochondrial A6NG06_HUMAN_00083;PRDX5_HUMAN_00031 4047 SRVLYEKFFRDHG wildtype peptide Peroxisomal 2,4-dienoyl-CoA reductase Q4VXZ8_HUMAN_00139;DECR2_HUMAN_00103 C9JB63_HUMAN_00139;F1LLU7_HUMAN_00092;F8W6J1_HUMAN_00092;F8WAW4_HUMAN_00 4048 DLINKAKWDAWNA wildtype peptide Enoyl-CoA delta isomerase 2, mitochondrial 062;ECI2_HUMAN_00057 Acetylome - Acetyltransferase Microarray page 113 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4049 LVEIAAKNLQKEV wildtype peptide Peroxisomal acyl-coenzyme A oxidase 1 F5GYQ8_HUMAN_00462;F5H0M0_HUMAN_00432;ACOX1_HUMAN_00500 4050 VKPLSNKLTYGTM wildtype peptide Peroxisomal acyl-coenzyme A oxidase 1 F5GYQ8_HUMAN_00234;F5H0M0_HUMAN_00204;ACOX1_HUMAN_00272 4051 RSSDFAKIINNTE wildtype peptide Phosphoserine aminotransferase 4052 LNMLSLKGHRSVG wildtype peptide Phosphoserine aminotransferase D3DQ69_HUMAN_00131;D3DQ70_HUMAN_00131;PAIRB_HUMAN_00068;PAIRB_HUMAN_00068 4053 NSNAAGKQLRKES wildtype peptide Plasminogen activator inhibitor 1 RNA-binding protein PAIRB_HUMAN_00068 4054 SFDEFIKIFHGLK wildtype peptide Plastin-2 4055 VVRGNPKLNLAFI wildtype peptide Plastin-2 4056 YAVELGKNQAKFS wildtype peptide Plastin-2 4057 SGPTVTKVVTVVT wildtype peptide Probable ATP-dependent RNA helicase DDX46 4058 GPLSGKKFGNPGE wildtype peptide Probable ATP-dependent RNA helicase DDX5 4059 TLYSKWKDFHFEK wildtype peptide Probable ATP-dependent RNA helicase DDX58 B3KWW1_HUMAN_00838;A2A376_HUMAN_00706;DDX58_HUMAN_00864 4060 TQLVKPKSEPQPN wildtype peptide Probable E3 ubiquitin-protein ligase MYCBP2 4061 EKDKKGKGGAKTL wildtype peptide Probable global transcription activator SNF2L2 4062 QSQVIPKTVRIKQ wildtype peptide Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial D6RDU9_HUMAN_00181;D6REA0_HUMAN_00181 4063 PPKAAFKEPKMAL wildtype peptide Protein ENL 4064 GMSVDPKESSVLQ wildtype peptide Protein FAM124B

4065 ALSKSKKSEKSGA wildtype peptide Protein FAM76A FA76A_HUMAN_00268;FA76A_HUMAN_00331;FA76A_HUMAN_00302;FA76A_HUMAN_00217 4066 QKMPYLKEEPYFG wildtype peptide Alpha-ketoglutarate-dependent dioxygenase FTO B3KPL2_HUMAN_00314;B5MBX1_HUMAN_00298;D3DQA3_HUMAN_00298;G3XAA4_HUMAN_00 4067 KMEPITKISHIPA wildtype peptide Protein Jade-2 298;JADE2_HUMAN_00298;JADE2_HUMAN_00298 4068 HGQSLGKPLVLQA wildtype peptide Protein Jade-3 4069 NGVSLLKDLYKCS wildtype peptide Protein unc-45 homolog A B8ZZA1_HUMAN_00124;B8ZZI3_HUMAN_00055;B8ZZQ6_HUMAN_00100;B8ZZW7_HUMAN_001 4070 DDVDTKKQKTDED wildtype peptide Prothymosin alpha 29;E7EVV7_HUMAN_00128;H7C2N1_HUMAN_00141;PTMA_HUMAN_00103 4071 KYNVEVKHIKIMT wildtype peptide Proto-oncogene vav 4072 LAKFIEKAAASVZ wildtype peptide Pterin-4-alpha-carbinolamine dehydratase 2 Putative ATP-dependent Clp protease proteolytic subunit, 4073 LYNIYAKHTKQSL wildtype peptide mitochondrial 4074 KDMLEKKVKKVVV wildtype peptide Putative heat shock protein HSP 90-alpha A5 4075 KVKNWVKELRKML wildtype peptide Ras-related protein Rab-21 4076 DLKDKAKETADAI wildtype peptide Receptor expression-enhancing protein 5 B1ALY6_HUMAN_00328;PTBP3_HUMAN_00392;PTBP3_HUMAN_00395;PTBP3_HUMAN_00429; 4077 GQRLYGKVLRATL wildtype peptide Polypyrimidine tract-binding protein 3 PTBP3_HUMAN_00426;PTBP3_HUMAN_00395 4078 GGVGRGKDISTIT wildtype peptide Remodeling and spacing factor 1 H0YDG9_HUMAN_00159;RSF1_HUMAN_01019;RSF1_HUMAN_00798 4079 TMEIYSKTTRFAL wildtype peptide Replication factor C subunit 2 H7C5P4_HUMAN_00019;RFC2_HUMAN_00129 C9J8M3_HUMAN_00013;C9JGY5_HUMAN_00013;C9JTT7_HUMAN_00013;C9JW34_HUMAN_000 4080 GTSISTKPPLTKD wildtype peptide Replication factor C subunit 4 13;C9JXZ7_HUMAN_00013;C9JZI1_HUMAN_00013;F8WE44_HUMAN_00013 H3BMM9_HUMAN_00221;H3BPG5_HUMAN_00044;H3BR57_HUMAN_00044;H3BTC0_HUMAN_00 4081 EAEKALKHMDGGQ wildtype peptide RNA-binding protein with serine-rich domain 1 221;H3BV80_HUMAN_00127;RNPS1_HUMAN_00198;RNPS1_HUMAN_00184 A8MZI9_HUMAN_00039;C9JK12_HUMAN_00027;C9JW25_HUMAN_00027;C9JWM1_HUMAN_000 38;F5H139_HUMAN_00027;H9KVB1_HUMAN_00024;RUNX1_HUMAN_00039;RUNX1_HUMAN_00 024;RUNX1_HUMAN_00024;RUNX1_HUMAN_00024;RUNX1_HUMAN_00024;RUNX1_HUMAN_00 4082 TALSPGKMSEALP wildtype peptide Runt-related transcription factor 1 024;RUNX1_HUMAN_00024;RUNX1_HUMAN_00051;RUNX1_HUMAN_00027 4083 EGEGLGKYSQGRK wildtype peptide Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 4084 HIRHHAKYLNAZZ wildtype peptide S-formylglutathione hydrolase 4085 LKNLFGKYGKVLS wildtype peptide SAFB-like transcription modulator

4086 YLDEPIKIGRSVA wildtype peptide Sarcolemmal membrane-associated protein SLMAP_HUMAN_00029;SLMAP_HUMAN_00029;SLMAP_HUMAN_00029;SLMAP_HUMAN_00029 Acetylome - Acetyltransferase Microarray page 114 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4087 GKSVHWKLGADKE wildtype peptide SH2 domain-containing protein 4A H0YAT1_HUMAN_00055;SH24A_HUMAN_00024 4088 CNEKLGKSVVAKV wildtype peptide Sialic acid synthase 4089 IQHAVFKELVKLV wildtype peptide Signal recognition particle 54 kDa protein G3V4F7_HUMAN_00017;SRP54_HUMAN_00032 4090 QLQGFRKFNILTS wildtype peptide Signal transducer and activator of transcription 2 B4DLC8_HUMAN_00371;G3V268_HUMAN_00375;G3V2M6_HUMAN_00371 4091 VAYQYVKKGSRIY wildtype peptide Single-stranded DNA-binding protein, mitochondrial C9K0U8_HUMAN_00103;E7EUY5_HUMAN_00103 4092 ISVTPVKNIDPVK wildtype peptide Sister chromatid cohesion protein PDS5 homolog A 4093 LEHLQSKYIGTGH wildtype peptide Splicing factor 3B subunit 5 4094 IEDVFYKYGAIRD wildtype peptide Serine/arginine-rich splicing factor 1 SRSF1_HUMAN_00038;SRSF1_HUMAN_00038 4095 LGNNGNKTELERA wildtype peptide Serine/arginine-rich splicing factor 3 4096 SRSGSIKGSRYFQ wildtype peptide Serine/arginine-rich splicing factor 7 G5E9M3_HUMAN_00185;H7BZZ6_HUMAN_00069 4097 IVEFASKPAARKA wildtype peptide Splicing factor, proline- and glutamine-rich 4098 FTYAQRKWYTMLA wildtype peptide SPRY domain-containing protein 4 4099 EALEAAKRLNAKE wildtype peptide Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial E9PDQ8_HUMAN_00073;F5H4S7_HUMAN_00025;SUCB2_HUMAN_00073

4100 EGGSPIKYNKDGS wildtype peptide Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial ST1A2_HUMAN_00106;E9PKR8_HUMAN_00106;H3BQX5_HUMAN_00064;H3BRY5_HUMAN_001 4101 PAPRLLKTHLPLA wildtype peptide Sulfotransferase 1A1 06 B0QYN7_HUMAN_00065;H3BPC4_HUMAN_00030;H3BQQ9_HUMAN_00065;H3BSW2_HUMAN_0 4102 KLRMLFKDDYPSS wildtype peptide SUMO-conjugating enzyme UBC9 0030 4103 VRLYIPKDLRPVD wildtype peptide Superkiller viralicidic activity 2-like 2 4104 FNPLSRKHGGPKD wildtype peptide Superoxide dismutase [Cu-Zn] 4105 QKLFKRKNNQIEQ wildtype peptide Tetratricopeptide repeat protein 39C G3V1P2_HUMAN_00114;TT39C_HUMAN_00360 4106 HYFPLLKKCHVPE wildtype peptide Thimet oligopeptidase 4107 GPCKMIKPFFHSL wildtype peptide Thioredoxin B2R5P6_HUMAN_00255;B7Z2S5_HUMAN_00305;E2QRB9_HUMAN_00299;E7ESI6_HUMAN_003 54;E7EW10_HUMAN_00370;E9PIR7_HUMAN_00255;E9PMY9_HUMAN_00217;E9PNQ6_HUMAN_ 00324;F5H780_HUMAN_00217;TRXR1_HUMAN_00299;TRXR1_HUMAN_00354;TRXR1_HUMAN_ 4108 RQFVPIKVEQIEA wildtype peptide Thioredoxin reductase 1, cytoplasmic 00307;TRXR1_HUMAN_00255;TRXR1_HUMAN_00370 4109 DKFVGIKDEDQLE wildtype peptide Thioredoxin, mitochondrial 4110 EHVYFAKFLTSEK wildtype peptide THO complex subunit 1 4111 KIEPFYKGGKAQL wildtype peptide Transducin beta-like protein 3 4112 AMVTHVKQEPRER wildtype peptide Transformation/transcription domain-associated protein F2Z2U4_HUMAN_02524;H0Y4W2_HUMAN_02265;TRRAP_HUMAN_02525 4113 SREVQQKIEKQYD wildtype peptide Transgelin-2 B3KSI4_HUMAN_00007;E7EPA7_HUMAN_00007;E9PFF2_HUMAN_00007;F8W888_HUMAN_000 4114 ZMESYHKPDQQKL wildtype peptide Transketolase 07;F8WAX4_HUMAN_00007 B3KSI4_HUMAN_00149;B4E022_HUMAN_00185;E7EPA7_HUMAN_00240;E9PFF2_HUMAN_0023 4115 KAFGQAKHQPTAI wildtype peptide Transketolase 2 4116 RVPRSGKPAELLK wildtype peptide Transketolase B3KSI4_HUMAN_00514;B4E022_HUMAN_00550;E7EPA7_HUMAN_00605 F8VUJ7_HUMAN_00058;F8VW92_HUMAN_00058;F8VYX6_HUMAN_00058;Q5JP53_HUMAN_000 4117 NEATGGKYVPRAI wildtype peptide Tubulin beta chain 40;E9PBJ4_HUMAN_00058 B4DT30_HUMAN_00028;E5RHG6_HUMAN_00028;E5RIX8_HUMAN_00028;E5RJD8_HUMAN_000 4118 EKVMYEKEAKQQE wildtype peptide Tubulin-specific chaperone A 39 4119 YIKDYMKSIKGKL wildtype peptide Translationally-controlled tumor protein Q8TBK7_HUMAN_00063;E9PJF7_HUMAN_00096 4120 RALMMMKFAEKAV wildtype peptide Tyrosine-protein kinase SgK223 4121 DLVEHYKKNPMVE wildtype peptide Tyrosine-protein phosphatase non-receptor type 11 H0YF12_HUMAN_00043;PTN11_HUMAN_00198;PTN11_HUMAN_00198 4122 KGKNRYKNILPFD wildtype peptide Tyrosine-protein phosphatase non-receptor type 6 G3V0F8_HUMAN_00277;PTN6_HUMAN_00238;PTN6_HUMAN_00279 4123 IHKKMLKPAFIFD wildtype peptide UDP-glucose 6-dehydrogenase B4DN25_HUMAN_00337;UGDH_HUMAN_00367 4124 YGELIEKYIKEGK wildtype peptide UMP-CMP kinase B2R6S5_HUMAN_00087;Q5T0D2_HUMAN_00087;E7EVE6_HUMAN_00087 4125 GPVMYGKLPRLET wildtype peptide Uncharacterized protein C15orf39 H3BRS2_HUMAN_00017;H3BT66_HUMAN_00017;CO039_HUMAN_00017 Acetylome - Acetyltransferase Microarray page 115 of 167

Sequence PEP_FLAG Protein name Uniprot IDs Q5TBH9_HUMAN_00185;Q5TBI2_HUMAN_00148;E9PEV9_HUMAN_00155;CA131_HUMAN_0018 4126 GITGYGKGKERIL wildtype peptide Uncharacterized protein C1orf131 5;CA131_HUMAN_00184 4127 LHALKEKVTSLPD wildtype peptide Uncharacterized protein C2orf47, mitochondrial 4128 MQPWHGKAMQRAS wildtype peptide Protein MB21D1 A6PW79_HUMAN_00007;M21D1_HUMAN_00007 4129 TTSTLQKAIDLVT wildtype peptide Vacuolar protein sorting-associated protein 4A 4130 HDLLKLKKFTEDF wildtype peptide Vacuolar protein sorting-associated protein 4B 4131 WKWKEEKGDRIYH wildtype peptide Valine--tRNA ligase B4DZ61_HUMAN_00128;B0V043_HUMAN_00423;H0Y4A6_HUMAN_00342 H0Y407_HUMAN_00332;H0Y462_HUMAN_00332;H0YBZ0_HUMAN_00304;VEGFA_HUMAN_0033 2;VEGFA_HUMAN_00332;VEGFA_HUMAN_00152;VEGFA_HUMAN_00152;VEGFA_HUMAN_0015 4132 GKGKGQKRKRKKS wildtype peptide Vascular endothelial growth factor A 2 4133 LCNSPQKPNDRDH wildtype peptide Very long-chain acyl-CoA synthetase G3V1R7_HUMAN_00090;S27A2_HUMAN_00272 4134 ZZZZMAKVEQVLS wildtype peptide Vesicle-associated membrane protein-associated protein B/C E5RK64_HUMAN_00007;VAPB_HUMAN_00007 4135 QKFVGEKLMRFSY wildtype peptide Zinc finger protein Helios C9JCG7_HUMAN_00216;F5H8M1_HUMAN_00143;IKZF2_HUMAN_00262 4136 EIEEFQKLQRQYG wildtype peptide Zinc finger with UFM1-specific peptidase domain protein 4137 VASRVQKYFIKLT wildtype peptide ZZ-type zinc finger-containing protein 3 ZZZ3_HUMAN_00700;ZZZ3_HUMAN_00207 4138 ZZZZZMKKRNKNE wildtype peptide NONE 4139 FKLFADKVPKTAE wildtype peptide Peptidyl-prolyl cis-trans isomerase 4140 DKKTQTKGKRGAK wildtype peptide Uncharacterized protein ENSP00000369749 4141 LTELNTKVKEKFQ wildtype peptide Vesicle transport protein SEC20 SEC20_HUMAN_00046;SEC20_HUMAN_00046;SEC20_HUMAN_00046 4142 SVPSVSKRVVLGD wildtype peptide Calcium signal-modulating cyclophilin ligand 4143 EEKKTKKKDAIVV wildtype peptide Cyclic nucleotide-gated cation channel alpha-3 4144 KVYDLTKFLEEHP wildtype peptide Cytochrome b5 F8WEU4_HUMAN_00039;CYB5_HUMAN_00039 4145 NVQEPEKKKKRRE wildtype peptide Ribosomal RNA processing protein 1 homolog A 4146 MLSRGFKDQIYDI wildtype peptide Eukaryotic initiation factor 4A-I F5GXL7_HUMAN_00177;MRP1_HUMAN_00503;MRP1_HUMAN_00503;MRP1_HUMAN_00503;MR P1_HUMAN_00503;MRP1_HUMAN_00503;MRP1_HUMAN_00503;MRP1_HUMAN_00503;MRP1_H 4147 SKDNRIKLMNEIL wildtype peptide Multidrug resistance-associated protein 1 UMAN_00503 4148 NEDGDIKRISTKE wildtype peptide SUMO-activating enzyme subunit 2 B3KWB9_HUMAN_00140;F5H4L5_HUMAN_00109 4149 VSRALEKILADKE wildtype peptide Brefeldin A-inhibited guanine nucleotide-exchange protein 2 B1AL79_HUMAN_00272;H0Y5V5_HUMAN_00054;PKN2_HUMAN_00272;PKN2_HUMAN_00272;P 4150 QKLDLLKYSLEQR wildtype peptide Serine/threonine-protein kinase N2 KN2_HUMAN_00115 4151 LTLETMKMMLDKK wildtype peptide Histone-lysine N-methyltransferase SETMAR B9ZVV8_HUMAN_00107;E7EN68_HUMAN_00204 4152 GEKKESKPAATTR wildtype peptide AFG3-like protein 2 4153 KGQAVRKQLWDVA wildtype peptide Glycogen [starch] synthase, liver 4154 RLKDKQKHRVDFF wildtype peptide Cytochrome P450 3A43 Q495Y1_HUMAN_00156;CP343_HUMAN_00266;CP343_HUMAN_00266

4155 KNQEAFKHLYFEK wildtype peptide Acyl-CoA synthetase short-chain family member 3, mitochondrial F5H025_HUMAN_00532;F5H1H0_HUMAN_00532;G3XAF4_HUMAN_00525;L1CAM_HUMAN_0053 4156 PRSTIEKKGSRVT wildtype peptide Neural cell adhesion molecule L1 0 4157 FLNLMEKLNENIK wildtype peptide Cytochrome P450 2C9 4158 QEGKLEKIQTKAG wildtype peptide 39S ribosomal protein L9, mitochondrial 4159 GIKKEQKEEPLRE wildtype peptide Protein C10orf27 Q5JX44_HUMAN_00135;Q5JX55_HUMAN_00135;Q5JX56_HUMAN_00135;Q5JX58_HUMAN_0013 5;Q5JX59_HUMAN_00135;Q5JX60_HUMAN_00135;A6PVH9_HUMAN_00135;E7ENH5_HUMAN_00 4160 VSAQELKDNRVVT wildtype peptide Copine-1 135;F2Z2V0_HUMAN_00135 4161 SSMPTEKKISSAS wildtype peptide Inactive phospholipase C-like protein 2 4162 KKCETRKLSPGKK wildtype peptide Protein SMG5 4163 LKKQDLKETFIDS wildtype peptide Protein IWS1 homolog E7EX51_HUMAN_00557;IWS1_HUMAN_00279;IWS1_HUMAN_00397 Q6P2E8_HUMAN_00221;D6RB59_HUMAN_00221;H0Y995_HUMAN_00091;H7BXW1_HUMAN_00 4164 IIEREEKIDRRIL wildtype peptide Exocyst complex component 3 231;EXOC3_HUMAN_00232 Acetylome - Acetyltransferase Microarray page 116 of 167

Sequence PEP_FLAG Protein name Uniprot IDs ADH1A_HUMAN_00355;B7ZB36_HUMAN_00146;F5HB16_HUMAN_00342;A8MYN5_HUMAN_0031 4165 HVLPFEKINEGFD wildtype peptide Alcohol dehydrogenase 1B 5 4166 VSNKRSKPDIKME wildtype peptide Otoferlin NAV2_HUMAN_01846;NAV2_HUMAN_01854;NAV2_HUMAN_01853;NAV2_HUMAN_01848;NAV2_ HUMAN_01861;NAV2_HUMAN_01858;NAV2_HUMAN_01794;NAV2_HUMAN_00922;NAV2_HUMA 4167 LRDKEMKLTDIRL wildtype peptide Neuron navigator 2 N_00303;NAV2_HUMAN_00021;NAV2_HUMAN_01837;NAV2_HUMAN_01843 B4DJV2_HUMAN_00063;F8VPA1_HUMAN_00010;F8VPF9_HUMAN_00010;F8VRP1_HUMAN_000 10;F8VTT8_HUMAN_00076;F8VU34_HUMAN_00076;F8VX07_HUMAN_00010;F8VX68_HUMAN_0 0010;F8VZK9_HUMAN_00010;F8W1S4_HUMAN_00040;F8W4S1_HUMAN_00076;F8W642_HUMA 4168 GGMRGMKGLVYET wildtype peptide Citrate synthase, mitochondrial N_00010;H0YH82_HUMAN_00040 4169 SRIAIEKIRLLTL wildtype peptide Acyl-CoA dehydrogenase family member 11 Q08AE9_HUMAN_00208;ACD11_HUMAN_00579;ACD11_HUMAN_00563 IFIX_HUMAN_00045;IFIX_HUMAN_00045;IFIX_HUMAN_00045;IFIX_HUMAN_00045;IFIX_HUMAN 4170 MKEEYDKIQIADL wildtype peptide Pyrin and HIN domain-containing protein 1 00045 F5GZU8_HUMAN_00295;F5H185_HUMAN_00627;F5H327_HUMAN_00403;G8JLA4_HUMAN_0035 5;G8JLD3_HUMAN_00655;G8JLM9_HUMAN_00627;RB6I2_HUMAN_00627;RB6I2_HUMAN_00627; 4171 NYKKDLKDLKEKV wildtype peptide ELKS/Rab6-interacting/CAST family member 1 RB6I2_HUMAN_00627;RB6I2_HUMAN_00355 4172 DIITALKKNNITK wildtype peptide Formin-like protein 2 4173 KAGSMSKQELDDI wildtype peptide Chromodomain-helicase-DNA-binding protein 3 E9PG89_HUMAN_01281;CHD3_HUMAN_01222 E9PFL2_HUMAN_00334;F5H2E8_HUMAN_00203;H0YJK7_HUMAN_00204;CMTA1_HUMAN_0124 4174 PAPKKHKLNPEYF wildtype peptide Calmodulin-binding transcription activator 1 7 4175 ILSELGKCVAGKD wildtype peptide Translational activator GCN1 4176 NAVNKKKTIVLRN wildtype peptide Probable phospholipid-transporting ATPase IB AT8A2_HUMAN_00113;B1ALJ8_HUMAN_00113;AT8A2_HUMAN_00113 4177 ESIAVKKRKCSLL wildtype peptide Protein artemis B3KSJ7_HUMAN_00337;DCR1C_HUMAN_00564;DCR1C_HUMAN_00569 4178 LTERLGKRKFSAG wildtype peptide Zinc finger CCCH domain-containing protein 11A B4DLG2_HUMAN_00232;E9PBY7_HUMAN_00286;E9PQ61_HUMAN_00286

4179 GKTCLLKAMLNLH wildtype peptide Transient receptor potential cation channel subfamily V member 1 E7EQ78_HUMAN_00161;E7EQ80_HUMAN_00159;E7ESJ2_HUMAN_00161 4180 NNENPLKSVSRII wildtype peptide Platelet receptor for type III collagen CYTSA_HUMAN_01013;A8MV89_HUMAN_00964;F5H1H6_HUMAN_01013;F5H2Z1_HUMAN_0030 4181 REYGGSKRNALLK wildtype peptide Cytospin-B 4;H7C4S0_HUMAN_00028;CYTSB_HUMAN_00883 B0UX83_HUMAN_00056;E7EMZ4_HUMAN_00056;F6RG75_HUMAN_00056;F6S6P2_HUMAN_000 56;F6TC96_HUMAN_00056;F6TH84_HUMAN_00056;F6U1F2_HUMAN_00056;F6U341_HUMAN_00 056;F6UR09_HUMAN_00056;F6VEM6_HUMAN_00056;F6WML8_HUMAN_00056;F6X9W3_HUMA N_00056;F6XTU0_HUMAN_00056;F8VX53_HUMAN_00056;F8VXY4_HUMAN_00056;G3V1Z5_HU 4182 VSIPSEKQRLIYQ wildtype peptide Large proline-rich protein BAG6 MAN_00056;BAG6_HUMAN_00056;BAG6_HUMAN_00056 Lipoamide acyltransferase component of branched-chain alpha- 4183 QKGEVYKAQIMNV wildtype peptide keto acid dehydrogenase complex, mitochondrial 4184 KGKRGAKGKQAEV wildtype peptide Non-histone chromosomal protein HMG-14 A6NEL0_HUMAN_00075;A6NL93_HUMAN_00049 C9JB80_HUMAN_00479;E7ET15_HUMAN_00911;H7C4V2_HUMAN_00232;SR140_HUMAN_00911 4185 ESRSKDKKEKDEC wildtype peptide U2 snRNP-associated SURP motif-containing protein ;SR140_HUMAN_00503

4186 LYVFKFKNEEEVF wildtype peptide Alpha-aminoadipic semialdehyde dehydrogenase E7EPT3_HUMAN_00402;F8VS02_HUMAN_00375;AL7A1_HUMAN_00411;AL7A1_HUMAN_00247 4187 LAQEERKLAQAYV wildtype peptide WD repeat-containing protein 87 E7ESW6_HUMAN_01654;WDR87_HUMAN_01654 Q5VU58_HUMAN_00104;Q5VU61_HUMAN_00080;Q5VU63_HUMAN_00014;Q5VU66_HUMAN_00 104;Q5VU72_HUMAN_00104;TPM3L_HUMAN_00079;TPM3_HUMAN_00104;TPM3_HUMAN_0010 4188 ALKDEEKMELQEI wildtype peptide Tropomyosin alpha-3 chain 4 4189 EEEEREKEKVREE wildtype peptide Fibrous sheath-interacting protein 2 FANK1_HUMAN_00019;A6NH44_HUMAN_00013;A6NKD7_HUMAN_00013;A6NP17_HUMAN_000 13;C9JD80_HUMAN_00013;H7BY65_HUMAN_00019;FANK1_HUMAN_00019;FANK1_HUMAN_000 4190 HPPVVGKVTHHSI wildtype peptide Fibronectin type 3 and ankyrin repeat domains protein 1 19 4191 TSLPGDKKSGTSP wildtype peptide Zinc finger CCCH domain-containing protein 3 Acetylome - Acetyltransferase Microarray page 117 of 167

Sequence PEP_FLAG Protein name Uniprot IDs Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 4192 LERSDKKAYEEAQ wildtype peptide DHX16 A2AB15_HUMAN_00143;B0V0F8_HUMAN_00203 4193 SMEELGKAKPTTR wildtype peptide Fibroblast growth factor-binding protein 2 4194 KDPHTHKTRCCVM wildtype peptide Protein tyrosine phosphatase type IVA 3 E5RFQ4_HUMAN_00081;TP4A3_HUMAN_00142;TP4A3_HUMAN_00081 4195 KIENLEKECKEKE wildtype peptide GRIP and coiled-coil domain-containing protein 2 4196 KKLNPQKEEQVHL wildtype peptide DBF4-type zinc finger-containing protein 2 4197 LCLYCGKLYSRKY wildtype peptide PR domain zinc finger protein 13 4198 ZZZQFKKDIDEHQ wildtype peptide Centrosomal protein of 68 kDa 4199 KSVTEVKEMDVHT wildtype peptide RE1-silencing transcription factor F8WAN5_HUMAN_00477;REST_HUMAN_00477 4200 DINNELKKLASCY wildtype peptide Peptidyl-prolyl cis-trans isomerase FKBP6 G3V0I2_HUMAN_00264;FKBP6_HUMAN_00289 4201 GKRRAEKDEMVGA wildtype peptide Sorting nexin-33 G3V1Q7_HUMAN_00963;H7BY07_HUMAN_00833;PMFBP_HUMAN_00958;PMFBP_HUMAN_0074 4202 NTRLCTKALGPSR wildtype peptide Polyamine-modulated factor 1-binding protein 1 8 4203 SHLTKHKTIHTGK wildtype peptide Zinc finger protein 682 E9PFJ5_HUMAN_00272;ZN682_HUMAN_00228 4204 DYNSWMKGCGWVP wildtype peptide Nebulin F8WCL5_HUMAN_00957;F8WCP0_HUMAN_00957 4205 VYKYPGKGCPTLG wildtype peptide Platelet glycoprotein Ib alpha chain 4206 KFECDCKAKWLYL wildtype peptide Leucine-rich repeat LGI family member 2 4207 SECFPCKPGTYAD wildtype peptide UPF0577 protein KIAA1324 C9J810_HUMAN_00279;K1324_HUMAN_00279;K1324_HUMAN_00279

MFN1_HUMAN_00334;A6NLD2_HUMAN_00077;F5H236_HUMAN_00334;F5H6V5_HUMAN_00219; 4208 ISQSAVKTKFEQH wildtype peptide Mitofusin-2 H7C5H5_HUMAN_00197;MFN2_HUMAN_00053;MFN1_HUMAN_00334;MFN1_HUMAN_00334 4209 SVQNEAKLDEILK wildtype peptide Coronin-1C A7MAP0_HUMAN_00446;B4E3S0_HUMAN_00335;H0YHL7_HUMAN_00131 4210 NAYITGKNLLMQA wildtype peptide Probable polyprenol reductase 4211 HYRVLGKGGFGEV wildtype peptide G protein-coupled receptor kinase 4 GRK4_HUMAN_00163;GRK4_HUMAN_00163;GRK4_HUMAN_00195 4212 LHQELNKSSAVTS wildtype peptide Centrosomal protein of 89 kDa 4213 CDSASTKVVIRGA wildtype peptide Glycosyltransferase 8 domain-containing protein 1 E7EMX8_HUMAN_00037;GL8D1_HUMAN_00206 4214 RNKTRGKMITDSG wildtype peptide FH1/FH2 domain-containing protein 3 E7ETX5_HUMAN_00500;FHOD3_HUMAN_01258;FHOD3_HUMAN_01296 4215 LWSHDQKPECGEG wildtype peptide Putative uncharacterized protein encoded by LINC00341 4216 SDYLEGKSSNQIY wildtype peptide Leucine-rich repeat and death domain-containing protein 1 4217 KQKEVQKENEFYM wildtype peptide Macoilin 4218 KCDKCDKGFFHIS wildtype peptide Zinc finger protein 664 4219 ESQALAKRSCGLF wildtype peptide Alpha-fetoprotein Membrane-associated guanylate kinase, WW and PDZ domain- 4220 GGAPARKAAVAPG wildtype peptide containing protein 2 Q8IUK7_HUMAN_00225;A6NBZ8_HUMAN_00438;B7WNR0_HUMAN_00323;C9JKR2_HUMAN_00 246;D6RHD5_HUMAN_00288;E7ESU5_HUMAN_00447;H0YA55_HUMAN_00283;ALBU_HUMAN_0 4221 LVRYTKKVPQVST wildtype peptide Serum albumin 0246 4222 DVDKAVKAARAAF wildtype peptide Aldehyde dehydrogenase, mitochondrial F8VXI5_HUMAN_00081;F8VP50_HUMAN_00062 4223 KGAVQRKNVQTLR wildtype peptide Ankyrin repeat domain-containing protein 20A1 A20A4_HUMAN_00353;AN20B_HUMAN_00353;A20A2_HUMAN_00353;A20A3_HUMAN_00353 4224 MYKVFLKYPESLR wildtype peptide AP-3 complex subunit delta-1 AP3D1_HUMAN_00176;AP3D1_HUMAN_00176 4225 WDFLPPKKIKDPD wildtype peptide Calreticulin A8MU92_HUMAN_00156;C9JB29_HUMAN_00053;E7EQ06_HUMAN_00156;E7ETB7_HUMAN_001 56;H7BZM4_HUMAN_00019;H7C0E2_HUMAN_00019;CASP8_HUMAN_00156;CASP8_HUMAN_00 156;CASP8_HUMAN_00188;CASP8_HUMAN_00156;CASP8_HUMAN_00156;CASP8_HUMAN_001 4226 VILGEGKLDILKR wildtype peptide Caspase-8 56;CASP8_HUMAN_00156;CASP8_HUMAN_00215 4227 RRVVKGKVEYLLK wildtype peptide Chromobox protein homolog 1 B5MD17_HUMAN_00035;C9JWS9_HUMAN_00035;E9PCS5_HUMAN_00035 4228 QNGKSKKVEEAEP wildtype peptide Chromobox protein homolog 3 B8ZZ43_HUMAN_00021;C9JMM0_HUMAN_00021 4229 NTWEPEKNLDCPE wildtype peptide Chromobox protein homolog 5 F8VNY3_HUMAN_00055;G3V1X9_HUMAN_00055 4230 TPSGAGKFPAGHS wildtype peptide Chromobox protein homolog 8 C9J6K3_HUMAN_00230;C9JM54_HUMAN_00215 Acetylome - Acetyltransferase Microarray page 118 of 167

Sequence PEP_FLAG Protein name Uniprot IDs [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, 4231 PKKIIEKWVDFAR wildtype peptide mitochondrial Q96G95_HUMAN_00233;A8MY43_HUMAN_00233 H0YCJ2_HUMAN_00717;H0YGI7_HUMAN_00896;H7C0R8_HUMAN_00896;PLCB1_HUMAN_0097 4232 AKKDSKKKSEPSS wildtype peptide 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 6 4233 KVVLDDKDYFLFR wildtype peptide 10 kDa heat shock protein, mitochondrial 4234 LLSVAYKNVIGAR wildtype peptide 14-3-3 protein epsilon

4235 VFYLKMKGDYFRY wildtype peptide 14-3-3 protein theta 1433B_HUMAN_00124;B4DMT8_HUMAN_00087;E9PG15_HUMAN_00122;1433B_HUMAN_00122 4236 ATNPESKVFYLKM wildtype peptide 14-3-3 protein theta B4DMT8_HUMAN_00080;E9PG15_HUMAN_00115 4237 RKHTGGKILGFFF wildtype peptide 40S ribosomal protein S15a 4238 QNPRQYKIPDWFL wildtype peptide 40S ribosomal protein S18 4239 GVGSMTKIYGGRQ wildtype peptide 40S ribosomal protein S19 4240 ADGIVSKNFZZZZ wildtype peptide 40S ribosomal protein S21 4241 NLVLFDKATYDKL wildtype peptide 40S ribosomal protein S25 4242 DAYVLPKLYVKLH wildtype peptide 40S ribosomal protein S26 F8VZW7_HUMAN_00066;RS26L_HUMAN_00066 4243 VKKLAKKYDAFLA wildtype peptide 60S ribosomal protein L10a 4244 AKHRISKEEAMRW wildtype peptide 60S ribosomal protein L11 Q5VVC8_HUMAN_00157;RL11_HUMAN_00158 4245 EEEKNFKAFASLR wildtype peptide 60S ribosomal protein L13 F5H1S2_HUMAN_00130;H3BUK8_HUMAN_00023 4246 KADINTKWAATRW wildtype peptide 60S ribosomal protein L14 B7Z6S8_HUMAN_00085;E7EPB3_HUMAN_00085 F8VWC5_HUMAN_00125;G3V203_HUMAN_00154;H0YHA7_HUMAN_00133;F8VUA6_HUMAN_00 4247 VYRHFGKAPGTPH wildtype peptide 60S ribosomal protein L18 102 4248 YARTDGKVFQFLN wildtype peptide 60S ribosomal protein L24 C9JNW5_HUMAN_00027;C9JXB8_HUMAN_00027 4249 HYDLLEKNINIVR wildtype peptide Aconitate hydratase, mitochondrial A2A274_HUMAN_00050;F5H2A5_HUMAN_00050 4250 TRSEFYKHIVLSG wildtype peptide Actin-related protein 2 E9PF41_HUMAN_00304;F5H6T1_HUMAN_00244;G3V1L8_HUMAN_00244 4251 KTSDFLKVLNRAR wildtype peptide Actin-related protein 2/3 complex subunit 2 C9JWM7_HUMAN_00054;E7ETI0_HUMAN_00035;F8WCF6_HUMAN_00035;F8WDD7_HUMAN_00 4252 VVERHNKPEVEVR wildtype peptide Actin-related protein 2/3 complex subunit 4 035;F8WE39_HUMAN_00035;H7C0A3_HUMAN_00035 4253 YDTDGSKWIKQYT wildtype peptide Actin-related protein 3 B4DTI0_HUMAN_00122;B4DXW1_HUMAN_00200;F5H3P5_HUMAN_00189

ACTA_HUMAN_00070;ACTG_HUMAN_00068;ACTH_HUMAN_00069;ACTC_HUMAN_00070;ACTS _HUMAN_00070;B4DUI8_HUMAN_00025;B4E335_HUMAN_00068;Q5T8M7_HUMAN_00070;Q5T8 M8_HUMAN_00070;A6NL76_HUMAN_00070;B8ZZJ2_HUMAN_00069;C9JFL5_HUMAN_00069;C9J TX5_HUMAN_00068;C9JUM1_HUMAN_00071;C9JZR7_HUMAN_00068;E7EQV5_HUMAN_00070; E7EVS6_HUMAN_00068;F5H0N0_HUMAN_00068;F5H1C1_HUMAN_00070;F6QUT6_HUMAN_000 4254 RGILTLKYPIEHG wildtype peptide Actin, cytoplasmic 1 70;F6UVQ4_HUMAN_00070;F8WB63_HUMAN_00069;G5E9R0_HUMAN_00068 4255 EIDVKFKDVAGCE wildtype peptide AFG3-like protein 2 4256 ALNEALKLFKMHS wildtype peptide Alanine--tRNA ligase, cytoplasmic A8MYB8_HUMAN_00178;C9JKT2_HUMAN_00178;C9JMC5_HUMAN_00178;E7ERM4_HUMAN_00 4257 ETTELLKERFDHI wildtype peptide Aldehyde dehydrogenase, dimeric NADP-preferring 105;E9PNN6_HUMAN_00178;H0Y3F3_HUMAN_00236 4258 WKSPLGKVKEAVK wildtype peptide Aldo-keto reductase family 1 member B10 4259 KPGLKYKPVTNQV wildtype peptide Aldo-keto reductase family 1 member B10 AK1BF_HUMAN_00207;AK1BF_HUMAN_00179 AK1C3_HUMAN_00161;AK1C2_HUMAN_00161;AK1C1_HUMAN_00161;B4DK69_HUMAN_00135; 4260 KDAGLAKSIGVSN wildtype peptide Aldo-keto reductase family 1 member C4 A6NHU4_HUMAN_00163;H0Y804_HUMAN_00128 H0YKS4_HUMAN_00115;H0YKX9_HUMAN_00115;H0YM50_HUMAN_00084;H0YMD0_HUMAN_00 115;H0YMM1_HUMAN_00115;H0YMT9_HUMAN_00115;H0YMU9_HUMAN_00115;H0YN42_HUMA 4261 YDASELKASMKGL wildtype peptide Annexin A2 N_00115;H0YNP5_HUMAN_00050;AXA2L_HUMAN_00115;ANXA2_HUMAN_00133 B3KRQ1_HUMAN_00110;H0YL33_HUMAN_00110;H0YM50_HUMAN_00196;H0YN28_HUMAN_001 10;H0YN42_HUMAN_00227;H0YNP5_HUMAN_00162;AXA2L_HUMAN_00227;ANXA2_HUMAN_00 4262 SVPHLQKVFDRYK wildtype peptide Annexin A2 245 4263 HVFDEYKRISQKD wildtype peptide Annexin A4 B4DDF9_HUMAN_00131;Q6P452_HUMAN_00193 Acetylome - Acetyltransferase Microarray page 119 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4264 DLLDDLKSELTGK wildtype peptide Annexin A5 D6RBL5_HUMAN_00010;E7ENQ5_HUMAN_00070;E9PHT9_HUMAN_00070 4265 ELKHALKGAGTNE wildtype peptide Annexin A5 D6RBL5_HUMAN_00041;E7ENQ5_HUMAN_00101;E9PHT9_HUMAN_00101 A6NN80_HUMAN_00081;E5RI05_HUMAN_00081;E5RIU8_HUMAN_00081;E5RJF5_HUMAN_0004 9;E5RJR0_HUMAN_00081;E5RK63_HUMAN_00049;E9PGK1_HUMAN_00049;E5RFF0_HUMAN_0 4266 KYELTGKFERLIV wildtype peptide Annexin A6 0081 4267 NDGSDEKKKLYCI wildtype peptide ATP synthase subunit alpha, mitochondrial 4268 QVAGTMKLELAQY wildtype peptide ATP synthase subunit alpha, mitochondrial 4269 SEQSDAKLKEIVT wildtype peptide ATP synthase subunit alpha, mitochondrial 4270 MINWVEKHVVQSI wildtype peptide ATP synthase subunit b, mitochondrial 4271 LLAPYAKGGKIGL wildtype peptide ATP synthase subunit beta, mitochondrial F8VPV9_HUMAN_00198;F8W079_HUMAN_00137;H0YH81_HUMAN_00135 4272 AVAKADKLAEEHS wildtype peptide ATP synthase subunit beta, mitochondrial 4273 LNQYFQKEKIQGE wildtype peptide ATP-dependent RNA helicase A 4274 LKNAELKFNFGEE wildtype peptide ATP-dependent RNA helicase DDX1 B4DME8_HUMAN_00111;B4DPN6_HUMAN_00223 4275 LEKLIEKNYFLHK wildtype peptide ATP-dependent RNA helicase DDX18 4276 KQSSCGKFQTKGI wildtype peptide ATP-dependent RNA helicase DDX24 Q4V9L5_HUMAN_00017;E7ETZ2_HUMAN_00017 4277 DRSGFGKFERGGN wildtype peptide ATP-dependent RNA helicase DDX3X B4DLU5_HUMAN_00118;B4E3C4_HUMAN_00162;DDX3X_HUMAN_00102 4278 TYHAIQKYFSAKS wildtype peptide ATP-dependent RNA helicase SUPV3L1, mitochondrial Q05GC8_HUMAN_01174;TREF1_HUMAN_00910;TREF1_HUMAN_00922;TREF1_HUMAN_01071; 4279 DQLSLIKPIKDVD wildtype peptide Transcriptional-regulating factor 1 TREF1_HUMAN_01083 4280 RSITAAKYREKQQ wildtype peptide Ribosome biogenesis protein BRX1 homolog 4281 TSVLFSKKNPKTA wildtype peptide Peregrin BRPF1_HUMAN_00902;BRPF1_HUMAN_00895 B7ZLN5_HUMAN_00546;Q17RB6_HUMAN_00546;E9PI60_HUMAN_00546;E9PSF3_HUMAN_0054 4282 EKTSAVKEELKYW wildtype peptide Bromodomain and PHD finger-containing protein 3 6;F6XDC4_HUMAN_00546;H0Y7B4_HUMAN_00519 4283 TSVLFCKSKSVSP wildtype peptide Bromodomain-containing protein 1 4284 ENDEEMKAAKEKL wildtype peptide Bromodomain-containing protein 1 F5H6M9_HUMAN_00209;BRD1_HUMAN_00516 4285 VGPLIIKKKETZZ wildtype peptide CDGSH iron-sulfur domain-containing protein 1 4286 AFAPFGKISDARV wildtype peptide Nucleolysin TIAR E7ETJ9_HUMAN_00083;TIAR_HUMAN_00139 4287 TTYCIKKLPRNPQ wildtype peptide Beta-lactamase-like protein 2 4288 SRNDQKKTKVKKK wildtype peptide Ras GTPase-activating protein 2 4289 GEPKGAKRAKPVK wildtype peptide Ras GTPase-activating-like protein IQGAP2 F5H7S7_HUMAN_00976;IQGA2_HUMAN_00970 4290 TYEEGLKHEANNP wildtype peptide Stress-induced-phosphoprotein 1 F5GXD8_HUMAN_00100;F5H783_HUMAN_00100;G3XAD8_HUMAN_00147 4291 SMFQKNKEDLRAT wildtype peptide Cingulin 4292 VEELKEKLRKRTE wildtype peptide Luc7-like protein 3 B4DJ96_HUMAN_00157;H0YA81_HUMAN_00053 4293 LVAQLYKIVPNVL wildtype peptide Citrate synthase, mitochondrial B4DJV2_HUMAN_00369;H0YIC4_HUMAN_00055 4294 FTSQAEKHLPRKS wildtype peptide Claspin E7ESG2_HUMAN_00872;CLSPN_HUMAN_00861;CLSPN_HUMAN_00925 4295 LAQRLEKHELIEF wildtype peptide Clathrin heavy chain 1 4296 RKQLLEKWLKEDK wildtype peptide Clathrin heavy chain 2 CLH1_HUMAN_00450;CLH2_HUMAN_00450;CLH1_HUMAN_00450 4297 VKQEFEKQDELKR wildtype peptide Cullin-associated NEDD8-dissociated protein 2 CAND1_HUMAN_01168;CAND2_HUMAN_01056;CAND1_HUMAN_01000 4298 SLPHENKPLTLSN wildtype peptide Cystatin-B B3KVC9_HUMAN_00085;E9PND2_HUMAN_00071;E9PP21_HUMAN_00075;E9PS42_HUMAN_001 4299 TNPNASKFAQKIG wildtype peptide Cysteine and glycine-rich protein 1 08 4300 FRHQTTKFLYRLV wildtype peptide Cysteine-rich protein 2-binding protein E7EWR9_HUMAN_00385;CSR2B_HUMAN_00444 4301 LLDLAQKHLGGIP wildtype peptide Cytochrome b-c1 complex subunit 1, mitochondrial 4302 DHCVAHKLFNNLK wildtype peptide Cytochrome b-c1 complex subunit 6, mitochondrial Dihydrolipoyllysine-residue succinyltransferase component of 2- 4303 HKEAFLKKHNLKL wildtype peptide oxoglutarate dehydrogenase complex, mitochondrial B7Z5W8_HUMAN_00186;Q86SW4_HUMAN_00255 4304 SGLIVNKAPHDFQ wildtype peptide Dipeptidyl peptidase 9 DPP9_HUMAN_00080;DPP9_HUMAN_00051;DPP9_HUMAN_00051 4305 KEIYHWKRWPLMN wildtype peptide DmX-like protein 2 F5GX68_HUMAN_01117;H0YFC7_HUMAN_00985;DNMT1_HUMAN_01133;DNMT1_HUMAN_0078 4306 KGKGKGKGKPKSQ wildtype peptide DNA (cytosine-5)-methyltransferase 1 1 Acetylome - Acetyltransferase Microarray page 120 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B4DG00_HUMAN_00378;B4DZP5_HUMAN_00753;E7EPB0_HUMAN_00936;F5GZ34_HUMAN_001 4307 VIKSVGKIEHSFW wildtype peptide DNA damage-binding protein 1 14;F8WF81_HUMAN_00054 Q5TG36_HUMAN_00036;Q5TG37_HUMAN_00007;Q5TG38_HUMAN_00036;Q5TG39_HUMAN_00 4308 IINPDKKKSKKSS wildtype peptide DNA methyltransferase 1-associated protein 1 036;Q5TG40_HUMAN_00036 Q6AWB1_HUMAN_00193;A8MWX9_HUMAN_00213;A8MY36_HUMAN_00223;E7EUR0_HUMAN_0 0206;E7EX90_HUMAN_00213;E9PFS5_HUMAN_00193;E9PGE1_HUMAN_00210;G5E9H4_HUMA 4309 VRDLEEKLETLRL wildtype peptide Dynactin subunit 1 N_00096;DCTN1_HUMAN_00096 E5KLJ5_HUMAN_00283;E5KLJ6_HUMAN_00246;E5KLJ9_HUMAN_00247;E5KLK1_HUMAN_0022 4310 LLHTQLKYQRILE wildtype peptide Dynamin-like 120 kDa protein, mitochondrial 9;H7C321_HUMAN_00146;OPA1_HUMAN_00265 4311 EKYNIEKDIAAHI wildtype peptide Dynein light chain 1, cytoplasmic F8VRV5_HUMAN_00036;F8VXI7_HUMAN_00036;F8VXL2_HUMAN_00036 4312 EAKVKSKPRTVPF wildtype peptide Dysbindin A6NFV8_HUMAN_00035;F5GY46_HUMAN_00035;DTBP1_HUMAN_00035 4313 QQVPFAKPLPTFA wildtype peptide E1A-binding protein p400 EP400_HUMAN_02313;EP400_HUMAN_02276;EP400_HUMAN_02232;EP400_HUMAN_02312 4314 LGRLPAKTLKPEV wildtype peptide E3 SUMO-protein ligase PIAS4 4315 YSSKFLKHWDHLT wildtype peptide Enoyl-CoA hydratase, mitochondrial

4316 IKALGAKHCVKEV wildtype peptide ES1 protein homolog, mitochondrial H7C1F6_HUMAN_00208;H7C2G3_HUMAN_00135;H7C455_HUMAN_00198;ES1_HUMAN_00188 4317 RRYLSPKYIKMFV wildtype peptide Eukaryotic initiation factor 4A-I 4318 VDWLTEKMREANF wildtype peptide Eukaryotic initiation factor 4A-III Eukaryotic peptide chain release factor GTP-binding subunit ERF3B_HUMAN_00619;F5GWG9_HUMAN_00536;H3BR35_HUMAN_00466;ERF3A_HUMAN_0062 4319 KTIAIGKVLKLVP wildtype peptide ERF3A 7 4320 SSVVFIKNRLYTN wildtype peptide Eukaryotic translation elongation factor 1 epsilon-1 4321 KGKGKGKARAGQG wildtype peptide F-box and WD-40 domain protein 4, isoform CRA_b 4322 KSNVSYKNPSLMP wildtype peptide FACT complex subunit SPT16 4323 GVFSKDKFPGEFM wildtype peptide FACT complex subunit SPT16 4324 RQGIIFKNSKTGK wildtype peptide FACT complex subunit SSRP1 4325 VEVKKGKDPNAPK wildtype peptide FACT complex subunit SSRP1 4326 ARQIAAKIGGDAA wildtype peptide Far upstream element-binding protein 2 E7EP96_HUMAN_00043;FUBP2_HUMAN_00087 4327 ADPHNLKICCRVN wildtype peptide Fumarylacetoacetate hydrolase domain-containing protein 2B FAH2A_HUMAN_00234;D3DXG4_HUMAN_00233;D3DXG5_HUMAN_00233 4328 EVAPDAKSFVLNL wildtype peptide Galectin-1 4329 TINKFDKNFSAHL wildtype peptide Gamma-tubulin complex component 2 B3KTU7_HUMAN_00420;F5H4E0_HUMAN_00697;F5H4L0_HUMAN_00855 Q5T0I0_HUMAN_00010;Q5T0I1_HUMAN_00021;F5H1A8_HUMAN_00018;F5H8M4_HUMAN_0001 4330 EHPEFLKAGKEPG wildtype peptide Gelsolin 0;F8WA45_HUMAN_00010;GELS_HUMAN_00010;GELS_HUMAN_00021 4331 LRAAASKLEQGKR wildtype peptide General transcription factor IIF subunit 1

4332 SNGAIQKIVAFEN wildtype peptide General vesicular transport factor p115 F5GYR8_HUMAN_00204;F5GZ76_HUMAN_00037;F5H4X1_HUMAN_00187;USO1_HUMAN_00206 4333 NDVQHFKVLRDGA wildtype peptide Growth factor receptor-bound protein 2 4334 QKLTLEKVFRGLL wildtype peptide GrpE protein homolog 2, mitochondrial 4335 SNYNFEKPFLWLA wildtype peptide GTP-binding nuclear protein Ran B4DV51_HUMAN_00071;B5MDF5_HUMAN_00176;F5H018_HUMAN_00155 4336 VLEYYQKKGVLET wildtype peptide GTP:AMP phosphotransferase, mitochondrial E7ET30_HUMAN_00149;KAD3_HUMAN_00119 B9EK38_HUMAN_01433;E7EQJ8_HUMAN_01420;H0YJB5_HUMAN_00058;RGPA1_HUMAN_0142 4337 TGAESDKTEKSVL wildtype peptide Ral GTPase-activating protein subunit alpha-1 0;RGPA1_HUMAN_01420;RGPA1_HUMAN_01420;RGPA1_HUMAN_01467

4338 ELKQQQKLDRQKE wildtype peptide Guanine nucleotide-binding protein-like 3 B4DMU5_HUMAN_00079;C9JYH9_HUMAN_00067;C9JZT7_HUMAN_00067;GNL3_HUMAN_00067 F8VRQ1_HUMAN_00007;F8VSB5_HUMAN_00007;F8VTQ5_HUMAN_00007;F8VXY0_HUMAN_000 07;F8W1S7_HUMAN_00007;F8W646_HUMAN_00007;F8W6I7_HUMAN_00007;ROA1_HUMAN_00 4339 ZZZZMSKSESPKE wildtype peptide Heterogeneous nuclear ribonucleoprotein A1 007;ROA1_HUMAN_00007

4340 IFVGGIKEDTEEY wildtype peptide Heterogeneous nuclear ribonucleoprotein A3 B4DDB6_HUMAN_00112;E7ERJ4_HUMAN_00112;E7EWI9_HUMAN_00112;ROA3_HUMAN_00112 4341 EHKLDGKLIDPKR wildtype peptide Heterogeneous nuclear ribonucleoprotein D-like HNRDL_HUMAN_00097;HNRDL_HUMAN_00097 Acetylome - Acetyltransferase Microarray page 121 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B4DTC3_HUMAN_00301;F5H6R6_HUMAN_00199;H0YA96_HUMAN_00208;H7BXN2_HUMAN_002 4342 GHQNSYKPYZZZZ wildtype peptide Heterogeneous nuclear ribonucleoprotein D0 79;HNRPD_HUMAN_00334;HNRPD_HUMAN_00304;HNRPD_HUMAN_00285 HNRH2_HUMAN_00167;B4DFK9_HUMAN_00122;D6RBM0_HUMAN_00167;E5RGH4_HUMAN_00 090;E5RGV0_HUMAN_00115;E7EN40_HUMAN_00119;E9PCY7_HUMAN_00167;G8JLB6_HUMAN 4343 SQEIAEKALKKHK wildtype peptide Heterogeneous nuclear ribonucleoprotein H _00167;H0YB39_HUMAN_00042 4344 DRPMHVKMDERAL wildtype peptide Heterogeneous nuclear ribonucleoprotein M Q59ES8_HUMAN_00177;HNRPM_HUMAN_00238 4345 QPSQEVKMEAKME wildtype peptide Histone acetyltransferase p300 4346 LYATMEKHKEVFF wildtype peptide Histone acetyltransferase p300 CBP_HUMAN_01627;Q4LE28_HUMAN_01657 4347 ESTDVTKGDSKNA wildtype peptide Histone acetyltransferase p300 4348 SKNAKKKNNKKTS wildtype peptide Histone acetyltransferase p300 4349 KKTSKNKSSLSRG wildtype peptide Histone acetyltransferase p300 4350 HSDDYIKFLRSIR wildtype peptide Histone deacetylase 1 Q5TEE2_HUMAN_00074;Q6IT96_HUMAN_00074 4351 AINKAQKKDGKKR wildtype peptide Histone H2B type 1-M 4352 AVTKVQKKDGKKR wildtype peptide Histone H2B type 2-F B4DR52_HUMAN_00024;H2B2F_HUMAN_00024 4353 AVTKAQKKDGRKR wildtype peptide Histone H2B type F-S 4354 GGKAPRKQLATKV wildtype peptide Histone H3.1t 4355 PSTGGVKKPHRYR wildtype peptide Histone H3.3 4356 ZMSGRGKGGKGLG wildtype peptide Histone H4 4357 YDSSSSKGKKKGR wildtype peptide Inhibitor of growth protein 4 ING4_HUMAN_00103;ING4_HUMAN_00127 ING4_HUMAN_00155;ING4_HUMAN_00132;ING4_HUMAN_00152;ING4_HUMAN_00153;ING4_HU 4358 SDEEAPKTAQKKL wildtype peptide Inhibitor of growth protein 4 MAN_00155;ING4_HUMAN_00153;ING4_HUMAN_00156 4359 SSSKGKKKGRTQK wildtype peptide Inhibitor of growth protein 4 ING4_HUMAN_00106;ING4_HUMAN_00130 ING4_HUMAN_00235;ING4_HUMAN_00212;ING4_HUMAN_00232;ING4_HUMAN_00233;ING4_HU 4360 TTKPRGKWFCPRC wildtype peptide Inhibitor of growth protein 4 MAN_00235;ING4_HUMAN_00233 4361 STHDHWKALVTKK wildtype peptide Inorganic pyrophosphatase E2QRM6_HUMAN_00258;F8WDN9_HUMAN_00174;IPYR2_HUMAN_00291;IPYR2_HUMAN_00247 4362 STHQCWKALLMKK wildtype peptide Inorganic pyrophosphatase 2, mitochondrial ;IPYR2_HUMAN_00110 4363 AEIEGLKGQRASL wildtype peptide Keratin, type II cytoskeletal 8 KH domain-containing, RNA-binding, signal transduction- E5RG12_HUMAN_00125;E5RJZ9_HUMAN_00124;H0YAQ1_HUMAN_00067;H0YAQ3_HUMAN_00 4364 HALEEIKKFLIPD wildtype peptide associated protein 3 077;KHDR3_HUMAN_00152 4365 LASCYLKQGKYAE wildtype peptide Kinesin light chain 4 B4DME9_HUMAN_00314;H7C4M1_HUMAN_00100;KLC4_HUMAN_00409 4366 LHQIFEKLTDNGT wildtype peptide Kinesin-like protein KIF11 4367 VMELKEKAVIFIR wildtype peptide Kinetochore-associated protein 1 4368 GHPSLVKALSYLY wildtype peptide Kynurenine--oxoglutarate transaminase 3 KAT3_HUMAN_00108;KAT3_HUMAN_00074 4369 EQIIQVKELSKGV wildtype peptide Eukaryotic translation initiation factor 2D Lipoamide acyltransferase component of branched-chain alpha- 4370 KLREELKPIAFAR wildtype peptide keto acid dehydrogenase complex, mitochondrial Q5VVL7_HUMAN_00295;F5H1F9_HUMAN_00114 4371 IEVQKMKKAVESL wildtype peptide Liprin-beta-1 F5GZP6_HUMAN_00137;LIPB1_HUMAN_00289;LIPB1_HUMAN_00156;LIPB1_HUMAN_00278 D6RD96_HUMAN_00089;D6RDA8_HUMAN_00089;D6RF95_HUMAN_00048;D6RFW9_HUMAN_00 4372 FDHAVSKFGKKDS wildtype peptide Long-chain-fatty-acid--CoA ligase 4 089;ACSL4_HUMAN_00048 4373 NRSVYIKGFPTDA wildtype peptide Lupus La protein E7ERC4_HUMAN_00116;E9PFH8_HUMAN_00116;E9PGX9_HUMAN_00065 4374 VATGHGKYEKVLV wildtype peptide Lymphocyte-specific protein 1 E9PBV6_HUMAN_00265;E9PFP3_HUMAN_00455 Methylmalonate-semialdehyde dehydrogenase [acylating], 4375 VESKSDKWIDIHN wildtype peptide mitochondrial 4376 IAGFLQKNKAGGM wildtype peptide Methylmalonyl-CoA epimerase, mitochondrial F8VP44_HUMAN_00123;F8VVA6_HUMAN_00123;F8W0I9_HUMAN_00127;F8W126_HUMAN_001 4377 KRVKKSKQPLQVT wildtype peptide Microspherule protein 1 10;MCRS1_HUMAN_00136;MCRS1_HUMAN_00110 4378 EGLEKLKHLDFLK wildtype peptide Microtubule-associated protein 1B D6RA32_HUMAN_00523;D6RA40_HUMAN_00380 F5H1R4_HUMAN_00188;F5H4A3_HUMAN_00145;F5H4N1_HUMAN_00305;F6QP70_HUMAN_003 4379 LISYLEKRTTLEM wildtype peptide Minor histocompatibility protein HA-1 21;H7C3G5_HUMAN_00299 Acetylome - Acetyltransferase Microarray page 122 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4380 FIGRESKYCGLCD wildtype peptide Mitochondrial carrier homolog 2 E9PIE4_HUMAN_00149;E9PNT8_HUMAN_00137;F5H3Y2_HUMAN_00010 D6R9J8_HUMAN_00119;D6RAH2_HUMAN_00119;D6RCM6_HUMAN_00119;D6RG21_HUMAN_00 4381 SEDKYRKINEDID wildtype peptide Myocyte-specific enhancer factor 2C 119;D6RJG6_HUMAN_00119;MEF2C_HUMAN_00119;MEF2C_HUMAN_00119 C9JMZ0_HUMAN_00262;D6R9J8_HUMAN_00264;D6RAH2_HUMAN_00264;D6RJG6_HUMAN_002 64;F8W7V7_HUMAN_00282;MEF2C_HUMAN_00264;MEF2C_HUMAN_00264;MEF2C_HUMAN_00 4382 LIPPGSKNTMPSV wildtype peptide Myocyte-specific enhancer factor 2C 216 Q5T9U4_HUMAN_00249;MEF2D_HUMAN_00249;MEF2D_HUMAN_00204;MEF2D_HUMAN_00250 4383 NKVIPAKSPPPPT wildtype peptide Myocyte-specific enhancer factor 2D ;MEF2D_HUMAN_00249;MEF2D_HUMAN_00204 MYL6_HUMAN_00050;B7Z6Z4_HUMAN_00143;F8VPF3_HUMAN_00038;F8VZV5_HUMAN_00050 F8W1I5_HUMAN_00107;F8W1R7_HUMAN_00050;G3V1V0_HUMAN_00050;G8JLA2_HUMAN_000 4384 TNAEVLKVLGNPK wildtype peptide Myosin light chain 6B 51;MYL6_HUMAN_00050

4385 KVLQQVKAESEHK wildtype peptide Myosin-10 F8VTL3_HUMAN_01278;F8W6L6_HUMAN_01263;MYH10_HUMAN_01263;MYH10_HUMAN_01268 4386 SVLHNLKERYYSG wildtype peptide Myosin-9 H3BMX9_HUMAN_00134;H3BNK9_HUMAN_00034;H3BP64_HUMAN_00134;H3BSY6_HUMAN_00 4387 NKKEVEKKLTVKP wildtype peptide Protein FAM192A 134;H3BU93_HUMAN_00057;H3BUL4_HUMAN_00134 H3BMX9_HUMAN_00146;H3BNK9_HUMAN_00046;H3BU93_HUMAN_00069;H3BUL4_HUMAN_00 4388 PIETKNKFSQAKL wildtype peptide Protein FAM192A 146 4389 KEIEFLKKETAQR wildtype peptide Neurabin-2 4390 RHQVHEKEEFKAL wildtype peptide Neurofibromin H0Y465_HUMAN_01226;NF1_HUMAN_01560;NF1_HUMAN_01581 4391 ILKHLLKNLFKIF wildtype peptide Nicotinamide N-methyltransferase 4392 ENWAYYKGLEKAL wildtype peptide N-alpha-acetyltransferase 15, NatA auxiliary subunit F5H5A7_HUMAN_00136;NAA15_HUMAN_00262 4393 SWARESKSFNVLK wildtype peptide Nuclear receptor-interacting protein 1 4394 RANQVLKFTKGKS wildtype peptide Nucleolar and coiled-body phosphoprotein 1 NOLC1_HUMAN_00673;NOLC1_HUMAN_00664 4395 FTPRLVKVLEFGR wildtype peptide Nucleolar protein 14 4396 PSISFSKPKKKKS wildtype peptide Nucleolar protein 56 4397 KLAKAGKNQGDPK wildtype peptide Nucleolin Q9BQ02_HUMAN_00009;E7EX81_HUMAN_00009 Q9BQ02_HUMAN_00132;C9J1H7_HUMAN_00116;C9JLB1_HUMAN_00116;C9JWL1_HUMAN_001 4398 GAAIPAKGAKNGK wildtype peptide Nucleolin 16;C9JYW2_HUMAN_00116 4399 IINSYPKYFQKDI wildtype peptide Pentatricopeptide repeat-containing protein 3, mitochondrial B4DF73_HUMAN_00126;B8ZZQ4_HUMAN_00126 4400 HNGTGGKSIYGEK wildtype peptide Peptidyl-prolyl cis-trans isomerase A Q567Q0_HUMAN_00016;C9J5S7_HUMAN_00076;F8WE65_HUMAN_00076 4401 FFICTAKTEWLDG wildtype peptide Peptidyl-prolyl cis-trans isomerase A PAL4G_HUMAN_00118;Q567Q0_HUMAN_00058 4402 NSSSGGKNGQGEP wildtype peptide Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 4403 KADVVPKTAENFR wildtype peptide Peptidyl-prolyl cis-trans isomerase F, mitochondrial Q2YDB7_HUMAN_00073;H0Y548_HUMAN_00037 E9PAX8_HUMAN_00221;F8W0Q9_HUMAN_00258;F8W6A0_HUMAN_00120;F8WF16_HUMAN_00 173;PPHLN_HUMAN_00247;PPHLN_HUMAN_00185;PPHLN_HUMAN_00192;PPHLN_HUMAN_00 4404 SKWAAEKLEKSDE wildtype peptide Periphilin-1 192;PPHLN_HUMAN_00056;PPHLN_HUMAN_00240 4405 KDVLFLKDCVGPE wildtype peptide Phosphoglycerate kinase 1 B4DHM5_HUMAN_00092;B4E1H9_HUMAN_00177;B7Z7A9_HUMAN_00239;E7ERH5_HUMAN_00 4406 EGAKIVKDLMSKA wildtype peptide Phosphoglycerate kinase 1 131 4407 LKSLLGKDVLFLK wildtype peptide Phosphoglycerate kinase 1 PGK2_HUMAN_00091;B7Z7A9_HUMAN_00063 4408 HGEAQVKIWRRSY wildtype peptide Phosphoglycerate mutase 1 4409 VDGSLEKDRTLTP wildtype peptide Serine/threonine-protein phosphatase PGAM5, mitochondrial

4410 MHEFSAKDIDGHM wildtype peptide Phospholipid hydroperoxide glutathione peroxidase, mitochondrial 4411 YKSDTGKPYYYNN wildtype peptide Pre-mRNA-processing factor 40 homolog B F8VU11_HUMAN_00170;PR40B_HUMAN_00142;PR40B_HUMAN_00148 4412 PQYLVEKIIRTRI wildtype peptide Pre-mRNA-splicing factor 38A

4413 SSEFAKKKSILEQ wildtype peptide Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 4414 LDEQYQKYKFMEL wildtype peptide Prefoldin subunit 3 Acetylome - Acetyltransferase Microarray page 123 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4415 LGPVLVKQELGEA wildtype peptide Prefoldin subunit 6 B7Z4D4_HUMAN_00063;HMGC2_HUMAN_00093;F8W793_HUMAN_00063;G5E9S9_HUMAN_000 4416 DGLQNEKVIVPTD wildtype peptide Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 63;HMGC2_HUMAN_00063 A2ACR0_HUMAN_00030;A2ACR1_HUMAN_00030;B0V0T2_HUMAN_00030;B0V0T3_HUMAN_000 4417 VNRVFDKLSPLHE wildtype peptide Proteasome subunit beta type-9 30;PSB9_HUMAN_00043 B4DV00_HUMAN_00094;B4DX49_HUMAN_00139;G3V2X6_HUMAN_00162;G3V580_HUMAN_001 4418 TLCDYSKRIAVAL wildtype peptide Protein arginine N-methyltransferase 5 55;G3V5L5_HUMAN_00158;G3V5W5_HUMAN_00156;ANM5_HUMAN_00183 B2RCF7_HUMAN_00247;F5GZM0_HUMAN_00286;BANPL_HUMAN_00052;BANP_HUMAN_00247 4419 GQGKHGKKQLDPL wildtype peptide Protein BANP BANP_HUMAN_00223;BANP_HUMAN_00247;BANP_HUMAN_00253 4420 KAAVDLKPTLTII wildtype peptide Protein C-ets-1 Q96AC5_HUMAN_00008;F5GYX9_HUMAN_00008;ETS1_HUMAN_00008 4421 LDNFFAKRDKKKK wildtype peptide Protein CDV3 homolog D3DND1_HUMAN_00015;CDV3_HUMAN_00015 4422 PEKFQSKYEPRSH wildtype peptide Protein disulfide-isomerase A4

4423 NPYFENKVLSKEF wildtype peptide Protein SET A6NGV1_HUMAN_00126;Q5VXV2_HUMAN_00128;B2REB8_HUMAN_00125;SET_HUMAN_00137

SON_HUMAN_00016;SON_HUMAN_00016;SON_HUMAN_00016;SON_HUMAN_00016;SON_HUM 4424 RSFVVSKFREIQQ wildtype peptide Protein SON AN_00016;SON_HUMAN_00016;SON_HUMAN_00016;SON_HUMAN_00016;SON_HUMAN_00016 F8W8H8_HUMAN_00148;SBNO1_HUMAN_00148;SBNO1_HUMAN_00147;SBNO1_HUMAN_0014 4425 MTSAPSKDQVQLK wildtype peptide Protein strawberry notch homolog 1 8 4426 EVAHCAKSFALLK wildtype peptide Protein TBRG4 C9JY22_HUMAN_00259;H7C4R5_HUMAN_00030 4427 VKEFKSKLGKEKN wildtype peptide Protein TMED8 4428 GRVIFTKPVRGVE wildtype peptide Protein TSSC4 C9JJV1_HUMAN_00153;TSSC4_HUMAN_00153 MOES_HUMAN_00263;RADI_HUMAN_00263;A7YIJ8_HUMAN_00263;E7EQR4_HUMAN_00231;F5 4429 IKPIDKKAPDFVF wildtype peptide Ezrin H1A7_HUMAN_00127;H7BZI4_HUMAN_00263 MOES_HUMAN_00254;RADI_HUMAN_00254;A7YIJ8_HUMAN_00254;E7EQR4_HUMAN_00222;F5 4430 ISFNDKKFVIKPI wildtype peptide Ezrin H1A7_HUMAN_00118;H7BZI4_HUMAN_00254 4431 FVFQKDKGQKSPA wildtype peptide Ran-binding protein 3

4432 YCNFRNKEIMFHV wildtype peptide Rap1 GTPase-activating protein 1 F2Z357_HUMAN_00262;G3V1A7_HUMAN_00262;RPGP1_HUMAN_00262;RPGP1_HUMAN_00293 E9PH06_HUMAN_00330;G5E9P9_HUMAN_00422;H0Y8M2_HUMAN_00231;GDS1_HUMAN_0037 4433 MPPVQFKLLGTLR wildtype peptide Rap1 GTPase-GDP dissociation stimulator 1 2;GDS1_HUMAN_00373 4434 VDKSELKDFFQSY wildtype peptide Ras GTPase-activating protein-binding protein 1 F5H4D6_HUMAN_00175;F8W7N6_HUMAN_00199 4435 HHSGGEKPFQAQK wildtype peptide Ribonucleases P/MRP protein subunit POP1 4436 DFALIHKERKKAN wildtype peptide Ribose-phosphate pyrophosphokinase 3 PRPS1_HUMAN_00194;B4DNL6_HUMAN_00127;B1ALA9_HUMAN_00094 B4DLT4_HUMAN_00251;Q7Z721_HUMAN_00304;F6UYM1_HUMAN_00281;KS6B1_HUMAN_0028 4437 RKKTIDKILKCKL wildtype peptide Ribosomal protein S6 kinase beta-1 1 4438 SLLSQNKFWKYGK wildtype peptide E3 ubiquitin-protein ligase listerin H7BYG8_HUMAN_00305;LTN1_HUMAN_00259 4439 INVEFAKGSKRDM wildtype peptide RNA-binding protein 10 RBM10_HUMAN_00382;RBM10_HUMAN_00306;RBM10_HUMAN_00305

4440 KKTWFDKPNFNRT wildtype peptide RNA-binding protein 26 RBM26_HUMAN_00510;RBM26_HUMAN_00510;RBM26_HUMAN_00064;RBM26_HUMAN_00064 4441 AMDLKGKMPNKMI wildtype peptide Serine/threonine-protein kinase PRP4 homolog F5H2U2_HUMAN_00893;H0YDJ3_HUMAN_00487 4442 NEEQIHKFDKQKL wildtype peptide Serine/threonine-protein kinase TBK1 4443 TTPNATKEIKVKI wildtype peptide Serine/threonine-protein phosphatase 1 regulatory subunit 10 Q68CR8_HUMAN_00083;A6PVN5_HUMAN_00308;B7ZBQ0_HUMAN_00040;PTPA_HUMAN_0030 4444 KAECLEKFPVIQH wildtype peptide Serine/threonine-protein phosphatase 2A activator 2;PTPA_HUMAN_00273;PTPA_HUMAN_00260 4445 QANDYFKAKDYEN wildtype peptide Serine/threonine-protein phosphatase 5 B4DDZ8_HUMAN_00040;H0YDU8_HUMAN_00039 4446 RSLEEEKAAVTEA wildtype peptide Serine--tRNA ligase, mitochondrial B4DJM9_HUMAN_00110;E7EX87_HUMAN_00110;SYSM_HUMAN_00110

4447 PSEKEIKAQQDKL wildtype peptide Spectrin beta chain, brain 1 B2ZZ89_HUMAN_00927;D6W5C0_HUMAN_00841;SPTB2_HUMAN_00927;SPTB2_HUMAN_00914 4448 ASDYKDKYSHLIG wildtype peptide Sperm-associated antigen 7 Acetylome - Acetyltransferase Microarray page 124 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4449 MKTPFGKTPGQRS wildtype peptide Spindlin-1 4450 VRNIVDKTASFVA wildtype peptide Splicing factor 3A subunit 1 E9PAW1_HUMAN_00055;F8WB66_HUMAN_00055 4451 PFADGGKTPDPKM wildtype peptide Splicing factor 3B subunit 1 4452 IPQALEKILQLKE wildtype peptide Splicing factor 3B subunit 2 E9PJ04_HUMAN_00273;E9PPJ0_HUMAN_00258;H0YCG1_HUMAN_00269 4453 NVLFKTKFVDGVS wildtype peptide Structural maintenance of chromosomes protein 2 4454 RVIGAKKDQYFLD wildtype peptide Structural maintenance of chromosomes protein 3 4455 DKFYGVKFRNKVS wildtype peptide Structural maintenance of chromosomes protein 3 4456 KIKYWHKEISKIS wildtype peptide Structural maintenance of chromosomes protein 4 E9PD53_HUMAN_01012;F5H0U7_HUMAN_00631 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, D6RFM5_HUMAN_00485;E9PBJ5_HUMAN_00437;E9PEF8_HUMAN_00340;H0Y8X1_HUMAN_000 4457 DKVPPIKPNAGEE wildtype peptide mitochondrial 37 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, 4458 KLYGDLKHLKTFD wildtype peptide mitochondrial E9PBJ5_HUMAN_00499;E9PEF8_HUMAN_00402 4459 HTLTQIKDAVRDG wildtype peptide T-complex protein 1 subunit zeta B4DPJ8_HUMAN_00357;A6NCD2_HUMAN_00343 4460 PAVWQLKNSAKVM wildtype peptide Talin-1 4461 TNKKTGKPMINLY wildtype peptide TATA-binding protein-associated factor 2N F5GWQ7_HUMAN_00071;RBP56_HUMAN_00265 4462 QKGITVKQKSVSL wildtype peptide TBC1 domain family member 24 4463 HNTTSAKGFLSPG wildtype peptide Telomere-associated protein RIF1 4464 LVQQIIKNITTLK wildtype peptide Testis-expressed sequence 10 protein E7ERG2_HUMAN_00757;TEX10_HUMAN_00873 4465 LPLRPRKQATAAG wildtype peptide Transcription factor NF-E4 4466 AKPLETKSFTPKT wildtype peptide Transcription initiation factor TFIID subunit 3 4467 VKRLGDKHATLQK wildtype peptide Transcription intermediary factor 1-beta 4468 DVGRMFKQFNKLT wildtype peptide Transcription intermediary factor 1-beta F8WDE0_HUMAN_00894;ATRX_HUMAN_00763;ATRX_HUMAN_00850;ATRX_HUMAN_00929;AT 4469 LSDIAEKFLKKDQ wildtype peptide Transcriptional regulator ATRX RX_HUMAN_00812;ATRX_HUMAN_00899 4470 ESETFIKGKERKT wildtype peptide Transcriptional repressor CTCF 4471 YNCKLNKVDQKVK wildtype peptide tRNA (guanine(37)-N1)-methyltransferase TPM2_HUMAN_00012;TPM1_HUMAN_00012;C9IZA2_HUMAN_00012;Q5TCU3_HUMAN_00012;Q 5TCU8_HUMAN_00012;Q6ZN40_HUMAN_00012;D9YZV2_HUMAN_00012;D9YZV3_HUMAN_0001 2;D9YZV8_HUMAN_00012;D6RGJ6_HUMAN_00013;H0YKP3_HUMAN_00012;H0YKZ6_HUMAN_0 0012;H0YLS7_HUMAN_00012;TPM2_HUMAN_00012;TPM1_HUMAN_00012;TPM1_HUMAN_0001 4472 KKMQMLKLDKENA wildtype peptide Tropomyosin alpha-3 chain 2;TPM1_HUMAN_00012;TPM1_HUMAN_00012;TPM4_HUMAN_00012 TPM4_HUMAN_00125;Q5VU58_HUMAN_00125;Q5VU59_HUMAN_00109;Q5VU61_HUMAN_0010 1;Q5VU63_HUMAN_00035;Q5VU66_HUMAN_00125;Q5VU72_HUMAN_00125;Q8NAG3_HUMAN_ 4473 AEEADRKYEEVAR wildtype peptide Tropomyosin alpha-3 chain 00060;TPM3_HUMAN_00125;TPM3_HUMAN_00125;TPM4_HUMAN_00161 4474 FLTDTAKQIKTKV wildtype peptide Tryptophan--tRNA ligase, cytoplasmic H0YJP3_HUMAN_00119;SYWC_HUMAN_00319 TBA1A_HUMAN_00112;TBA1C_HUMAN_00112;F5H5D3_HUMAN_00182;F8VQQ4_HUMAN_0007 7;G3V1U9_HUMAN_00077;E9PGK3_HUMAN_00112;F8VRZ4_HUMAN_00077;F8VS66_HUMAN_0 4475 GHYTIGKEIIDLV wildtype peptide Tubulin alpha-1B chain 0112;F8VVB9_HUMAN_00112 TBA4A_HUMAN_00401;TBA3C_HUMAN_00401;TBA1A_HUMAN_00401;TBA1C_HUMAN_00401;T BA8_HUMAN_00401;A8MUB1_HUMAN_00386;C9J2C0_HUMAN_00425;F5H5D3_HUMAN_00471; G3V1U9_HUMAN_00366;E7ET24_HUMAN_00132;F8VWX4_HUMAN_00132;F8VXZ4_HUMAN_002 4476 FDLMYAKRAFVHW wildtype peptide Tubulin alpha-1B chain 48;TBA8_HUMAN_00335 4477 ASRRLMKELEEIR wildtype peptide Ubiquitin-conjugating enzyme E2 L3 4478 YHPNVDKLGRICL wildtype peptide Ubiquitin-conjugating enzyme E2 N F8VQQ8_HUMAN_00019;F8VSD4_HUMAN_00082;F8VV71_HUMAN_00082 4479 KVECGPKYPEAPP wildtype peptide Ubiquitin-conjugating enzyme E2 variant 2 G3V113_HUMAN_00032;H0YBP9_HUMAN_00036;H0YBX6_HUMAN_00077 4480 FLDLNHKYWERYL wildtype peptide Ubiquitin-like domain-containing CTD phosphatase 1 4481 IDAHLNKVCPTTE wildtype peptide Ubiquitin-like modifier-activating enzyme 6 H0Y8S8_HUMAN_00078;UBA6_HUMAN_00070 4482 VVPTFGKKKGPNA wildtype peptide 40S ribosomal protein S30 4483 PAGFNCKDETEFR wildtype peptide UPF0568 protein C14orf166 G3V4C6_HUMAN_00020;G3V4E7_HUMAN_00020 4484 HSSDWPKFFEKYL wildtype peptide UPF0568 protein C14orf166 Acetylome - Acetyltransferase Microarray page 125 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4485 DTQNALKNYRTAY wildtype peptide Trafficking protein particle complex subunit 11 B7WNP8_HUMAN_00245;TPC11_HUMAN_00245;TPC11_HUMAN_00245 C9JKD6_HUMAN_00438;D6W5E6_HUMAN_00277;E7EUC7_HUMAN_00447;UGPA_HUMAN_0042 4486 LGSSFTKVQDYLR wildtype peptide UTP--glucose-1-phosphate uridylyltransferase 7 4487 VTGIITKPVEGAK wildtype peptide Vacuolar protein sorting-associated protein 13C VP13C_HUMAN_03538;VP13C_HUMAN_03495;VP13C_HUMAN_03495 4488 VDDKWEKKCQKIF wildtype peptide Vacuolar protein sorting-associated protein 35 F5GYF5_HUMAN_00420;H3BR93_HUMAN_00064;H3BRJ7_HUMAN_00526 4489 APAPPSKVIKTVT wildtype peptide Wings apart-like protein homolog E9PH12_HUMAN_00642;WAPL_HUMAN_00641;WAPL_HUMAN_00689 4490 SSVPAQKTERKES wildtype peptide WW domain-containing adapter protein with coiled-coil B4DMH1_HUMAN_00257;WAC_HUMAN_00257;WAC_HUMAN_00257 4491 WADIASKPAKQQP wildtype peptide YTH domain family protein 2 F5H8I7_HUMAN_00245;YTHD2_HUMAN_00195 4492 GTFVAHKEIKLTL wildtype peptide Zinc finger CCCH domain-containing protein 18 E7ERS3_HUMAN_00838;H3BRH3_HUMAN_00057 4493 RNEIGGKPFKCEE wildtype peptide Zinc finger protein 195 ZN195_HUMAN_00336;ZN195_HUMAN_00385;ZN195_HUMAN_00389;ZN195_HUMAN_00340 4494 TSSSFGKFSWKKP wildtype peptide Zinc finger protein 318 B7Z795_HUMAN_00423;E9PAU8_HUMAN_00557;H3BQR4_HUMAN_00113;H3BQV8_HUMAN_00 4495 AKKAVEKPPQTEH wildtype peptide Liver carboxylesterase 1 090;EST1_HUMAN_00559 K6PP_HUMAN_00747;B1APP8_HUMAN_00165;Q5VSR7_HUMAN_00739;H0Y3P8_HUMAN_00736 4496 FEHRIPKEQWWLK wildtype peptide 6-phosphofructokinase, muscle type ;K6PF_HUMAN_00707 4497 QKATGQKAAPAPK wildtype peptide 60S ribosomal protein L14 B7Z7J4_HUMAN_00256;C9J521_HUMAN_00327;P73_HUMAN_00278;P73_HUMAN_00327;P73_H UMAN_00327;P73_HUMAN_00327;P73_HUMAN_00327;P73_HUMAN_00327;P73_HUMAN_00278; 4498 KNGAASKRAFKQS wildtype peptide Tumor protein p73 P73_HUMAN_00278

ACTA_HUMAN_00052;ACTG_HUMAN_00050;ACTH_HUMAN_00051;ACTC_HUMAN_00052;ACTS _HUMAN_00052;B4DUI8_HUMAN_00007;B4E335_HUMAN_00050;Q5T8M7_HUMAN_00052;Q5T8 M8_HUMAN_00052;A6NL76_HUMAN_00052;B8ZZJ2_HUMAN_00051;C9JFL5_HUMAN_00051;C9J TX5_HUMAN_00050;C9JUM1_HUMAN_00053;C9JZR7_HUMAN_00050;E7EQV5_HUMAN_00052; E7EVS6_HUMAN_00050;F5H0N0_HUMAN_00050;F5H1C1_HUMAN_00052;F6QUT6_HUMAN_000 4499 MVGMGQKDSYVGD wildtype peptide Actin, cytoplasmic 1 52;F6UVQ4_HUMAN_00052;F8WB63_HUMAN_00051;G5E9R0_HUMAN_00050 A6NBZ8_HUMAN_00257;B7WNR0_HUMAN_00142;C9JKR2_HUMAN_00065;D6RHD5_HUMAN_0 4500 EFAEVSKLVTDLT wildtype peptide Serum albumin 0107;E7ESU5_HUMAN_00266;H0YA55_HUMAN_00102;ALBU_HUMAN_00065 4501 HEELMKKTETMNV wildtype peptide Nucleoprotein TPR 4502 FGAPLTKLQVIQF wildtype peptide Short-chain specific acyl-CoA dehydrogenase, mitochondria 4503 SARDIQKWEYVPL wildtype peptide Fumarylacetoacetase 4504 LVEEDDKDKAKRV wildtype peptide Circadian locomoter output cycles protein kaput 4505 RRMKWKKESNLTS wildtype peptide Homeobox protein Hox-C6 4506 REKELIKREQAVE wildtype peptide Mitogen-activated protein kinase kinase kinase 13 M3K13_HUMAN_00358;M3K13_HUMAN_00295 4507 LELDGEKETAPEE wildtype peptide Beta-adducin C9JTM0_HUMAN_00335;E9PAV0_HUMAN_00277 4508 VSQINHKLEAQLV wildtype peptide Golgi-associated PDZ and coiled-coil motif-containing protein F5H1Y4_HUMAN_00093;GOPC_HUMAN_00093;GOPC_HUMAN_00093 4509 FECHSMKEKALAF wildtype peptide Thyroid receptor-interacting protein 11 F5H1Z0_HUMAN_01240;H0YJ97_HUMAN_01220 4510 TTQFVPKQYRLVE wildtype peptide Sentrin-specific protease 2 B4DQ42_HUMAN_00261;E7ENF4_HUMAN_00142 4511 IFVGIKKKEERAD wildtype peptide Cytochrome c

TF7L2_HUMAN_00362;E2GH20_HUMAN_00078;Q5JRY4_HUMAN_00073;Q5JRY5_HUMAN_0007 9;TF7L1_HUMAN_00358;B7WNT5_HUMAN_00281;C9IZK2_HUMAN_00281;D4PHA3_HUMAN_001 66;F8W742_HUMAN_00339;F8W7T5_HUMAN_00386;G8JLE2_HUMAN_00281;H0YAR8_HUMAN_ 00059;H0YBC8_HUMAN_00070;TCF7_HUMAN_00166;TCF7_HUMAN_00281;TCF7_HUMAN_0016 6;TCF7_HUMAN_00281;TCF7_HUMAN_00166;TCF7_HUMAN_00281;TCF7_HUMAN_00166;TCF7 _HUMAN_00166;TCF7_HUMAN_00281;TCF7_HUMAN_00166;TCF7_HUMAN_00281;TCF7_HUMA N_00166;TCF7_HUMAN_00281;TCF7_HUMAN_00166;TCF7_HUMAN_00281;TF7L2_HUMAN_003 35;TF7L2_HUMAN_00362;TF7L2_HUMAN_00362;TF7L2_HUMAN_00362;TF7L2_HUMAN_00362;T 4512 AFMLYMKEMRAKV wildtype peptide Transcription factor 7 F7L2_HUMAN_00362;TF7L2_HUMAN_00362;TF7L2_HUMAN_00339;TF7L2_HUMAN_00362 4513 QHVFCRKCFLTAM wildtype peptide E3 ubiquitin-protein ligase RNF138 Acetylome - Acetyltransferase Microarray page 126 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4514 NQKESEKDLRYVG wildtype peptide G patch domain-containing protein 1 4515 KQSGFGKDLGEAA wildtype peptide Cytosolic 10-formyltetrahydrofolate dehydrogenase 4516 TQLELEKEKSERR wildtype peptide Zinc finger CCHC domain-containing protein 14 H3BS18_HUMAN_00239;ZCH14_HUMAN_00355 G8JLI1_HUMAN_00878;H0Y7Y8_HUMAN_00278;H7C5R6_HUMAN_00192;ARI4B_HUMAN_00792 4517 KMTPTKKYNGLEE wildtype peptide AT-rich interactive domain-containing protein 4B ARI4B_HUMAN_00878;ARI4B_HUMAN_00559 4518 DCCKRQKDAENEF wildtype peptide DEP domain-containing protein 4 (Fragment) DEPD4_HUMAN_00174;E9PGM3_HUMAN_00174;H0YIL0_HUMAN_00167 4519 DKCSAPKIWRTPN wildtype peptide IQ and ubiquitin-like domain-containing protein 4520 SQSKASKELVERR wildtype peptide Eukaryotic translation initiation factor 3 subunit B B4DV79_HUMAN_00668;F8W8C8_HUMAN_00744;EIF3B_HUMAN_00744 4521 FSESEKKSYFSYF wildtype peptide NACHT, LRR and PYD domains-containing protein 9 4522 CEDCGKKLVYRSY wildtype peptide Zinc finger protein 223 4523 QKWGQRKNKPTMN wildtype peptide GA-binding protein alpha chain 4524 RARGSRKPRSSRT wildtype peptide cDNA FLJ42787 fis, clone BRAWH3006792 AT2B2_HUMAN_00389;AT2B3_HUMAN_00363;E7EME2_HUMAN_00389;E7ERY9_HUMAN_00108 ;F5H7F7_HUMAN_00324;H0Y7S3_HUMAN_00245;AT2B1_HUMAN_00365;AT2B1_HUMAN_00365; AT2B1_HUMAN_00365;AT2B1_HUMAN_00365;AT2B1_HUMAN_00365;AT2B2_HUMAN_00389;AT 2B2_HUMAN_00375;AT2B2_HUMAN_00344;AT2B2_HUMAN_00375;AT2B2_HUMAN_00344;AT2B 2_HUMAN_00358;AT2B2_HUMAN_00358;AT2B3_HUMAN_00363;AT2B3_HUMAN_00349;AT2B3_ HUMAN_00349;AT2B3_HUMAN_00363;AT2B3_HUMAN_00349;AT2B3_HUMAN_00363;AT2B3_HU 4525 KSVLQGKLTKLZZ wildtype peptide Plasma membrane calcium-transporting ATPase 1 MAN_00349 4526 IFYRDGKRKGVPF wildtype peptide FYVE, RhoGEF and PH domain-containing protein 5 4527 GDSKNAKKKKKZZ wildtype peptide EP300 protein 4528 VVSSKTKKVTKNE wildtype peptide Nucleolar RNA helicase 2 4529 LMEQLLKTLRYNF wildtype peptide Nucleoporin NUP188 homolog E9PET9_HUMAN_00742;F8W973_HUMAN_01298;NU188_HUMAN_01298 4530 NNKECGKVFSHHA wildtype peptide Zinc finger protein 534 H7BYH9_HUMAN_00289;ZN534_HUMAN_00277 B7Z596_HUMAN_00113;Q6ZN40_HUMAN_00191;D9YZV2_HUMAN_00149;D9YZV3_HUMAN_001 49;D9YZV8_HUMAN_00149;F5H7S3_HUMAN_00113;H0YK48_HUMAN_00113;H0YL52_HUMAN_0 0130;H0YNC7_HUMAN_00088;H0YK20_HUMAN_00023;H0YKX5_HUMAN_00073;H0YL42_HUMA N_00023;H7BYY1_HUMAN_00113;TPM1_HUMAN_00093;TPM1_HUMAN_00149;TPM1_HUMAN_0 4531 IQEIQLKEAKHIA wildtype peptide Tropomyosin alpha-1 chain 0149;TPM1_HUMAN_00113;TPM1_HUMAN_00149;TPM1_HUMAN_00149 4532 VNQDLPKEVLAEL wildtype peptide Phosphoenolpyruvate carboxykinase [GTP], mitochondria B4DW73_HUMAN_00490;H0YML5_HUMAN_00458 4533 QDFDIGKVYKKKI wildtype peptide Uncharacterized protein KIAA1751 4534 STRIFGKQTNKME wildtype peptide Leucine-rich repeat-containing protein 63 4535 IKYIKDKYPNLQV wildtype peptide Inosine-5-monophosphate dehydrogenase 2 F5H247_HUMAN_00293;H0Y4R1_HUMAN_00225;E7ETK5_HUMAN_00268 4536 IHLLNTKLEHVNR wildtype peptide Structural maintenance of chromosomes protein 1B SMC1B_HUMAN_00241;SMC1B_HUMAN_00241 4537 YRKLSLKGHNDWV wildtype peptide WD repeat-containing protein 88 Q5SWK9_HUMAN_00229;E9PEX4_HUMAN_00134;F5H2W7_HUMAN_00229;F5H5I1_HUMAN_00 4538 KGGKQEKVKQTAA wildtype peptide Triadin 229;H0YFU4_HUMAN_00229;H7BY47_HUMAN_00068;H7BYS7_HUMAN_00229 4539 YKEEVKKNILLEE wildtype peptide Centrosomal protein of 290 kDa

4540 SGLPFPKSGVVSR wildtype peptide Zinc finger and SCAN domain-containing protein 29 C9K0J8_HUMAN_00179;H3BMU4_HUMAN_00101;ZSC29_HUMAN_00060;ZSC29_HUMAN_00180 4541 PKWDDFKKKKKEL wildtype peptide Pumilio domain-containing protein KIAA0020 4542 KAVKKIKCDMLRY wildtype peptide Centrosomal protein of 152 kDa E7ER66_HUMAN_01278;CE152_HUMAN_01185;CE152_HUMAN_01278 A6NFQ9_HUMAN_00385;A6NMH6_HUMAN_00387;C9J9B6_HUMAN_00391;F6W7K9_HUMAN_00 4543 KRKVEEKRRELEE wildtype peptide Septin-8 387;F8W8I8_HUMAN_00385;SEPT8_HUMAN_00387;SEPT8_HUMAN_00327 4544 AGTQGRKSAACGQ wildtype peptide Serine protease 33 4545 GGSVLVKRMFRPM wildtype peptide Grainyhead-like protein 2 homolog C9JDN2_HUMAN_00512;GRHL2_HUMAN_00496 4546 LILNNLKTLLWKK wildtype peptide Protein FAM69A 4547 LTRSHLKSESSDE wildtype peptide UPF0614 protein C14orf102 4548 GQNESFKRYEEEL wildtype peptide Probable ATP-dependent RNA helicase DDX46 4549 MELLESKMTEEQH wildtype peptide IFT74 protein (Fragment) Acetylome - Acetyltransferase Microarray page 127 of 167

Sequence PEP_FLAG Protein name Uniprot IDs E9PC28_HUMAN_00327;E9PKH0_HUMAN_00261;E9PMF8_HUMAN_00309;F5GXY8_HUMAN_00 4550 ILYNNHKFTNASK wildtype peptide Receptor-type tyrosine-protein phosphatase C 377;F5GXZ3_HUMAN_00311;F5H547_HUMAN_00327;PTPRC_HUMAN_00214 RBL2B_HUMAN_00036;A8MXF6_HUMAN_00036;B7ZBD3_HUMAN_00036;B7ZBD4_HUMAN_0003 6;B7ZBD5_HUMAN_00036;E7EWW3_HUMAN_00036;F2Z2E5_HUMAN_00036;F2Z2T3_HUMAN_0 0036;F2Z3J7_HUMAN_00036;RBL2A_HUMAN_00036;RBL2A_HUMAN_00036;RBL2B_HUMAN_00 4551 SAVGKSKLMERFL wildtype peptide Rab-like protein 2A 036;RBL2B_HUMAN_00036 4552 YLDRAEKLKDYLR wildtype peptide Vacuolar protein sorting-associated protein 4A 4553 DKHWTAKNSRVVC wildtype peptide Lysyl oxidase homolog 2 4554 NSHGGKKGNEEKM wildtype peptide Epidermal growth factor-like protein 6 4555 VKKKVKKVQQKEG wildtype peptide DNA mismatch repair protein Msh3 4556 WKEVAEKRRKALY wildtype peptide Geminin 4557 GALDLEKPPLPQP wildtype peptide snRNA-activating protein complex subunit 4 4558 PAPRETKDTDIVD wildtype peptide Actin-related protein 2/3 complex subunit 3 B4DM63_HUMAN_00037;C9JZD1_HUMAN_00037;F8VR50_HUMAN_00029 4559 CFWEGAKLQGGSA wildtype peptide Protein patched homolog 2 4560 AVKFRDKEWIRPD wildtype peptide ATP synthase subunit s-like protein AT5SL_HUMAN_00103;F5GYX8_HUMAN_00179;F5H4W7_HUMAN_00109 4561 KTHIREKPYIGNE wildtype peptide Zinc finger protein 841 ZN841_HUMAN_00143;ZN841_HUMAN_00259 4562 TTADNRKVKSTIT wildtype peptide Fatty acid-binding protein 9 4563 AKEKEVKKITDGL wildtype peptide Structural maintenance of chromosomes protein 2 D3DQ79_HUMAN_00382;H7BXY5_HUMAN_00346;NEXN_HUMAN_00432;NEXN_HUMAN_00384 4564 SGSIQAKNLKSKF wildtype peptide Nexilin NEXN_HUMAN_00382 4565 ETTKPSKQSNNKY wildtype peptide Ig lambda-7 chain C region LAC1_HUMAN_00060;IGLL5_HUMAN_00168 B3KUP2_HUMAN_00062;C9JGV6_HUMAN_00102;C9JXG8_HUMAN_00102;H7C137_HUMAN_000 4566 ENAQKFKTKFEEC wildtype peptide Ran-specific GTPase-activating protein 79 4567 DRAGVSKGYGFVT wildtype peptide Protein boule-like F2Z2G3_HUMAN_00073;BOLL_HUMAN_00079;BOLL_HUMAN_00085;BOLL_HUMAN_00079 4568 PVKYPDKFSQASK wildtype peptide Rhodopsin kinase 4569 KLLESEKPNLQIL wildtype peptide Protein EFR3 homolog B E7ESK9_HUMAN_00076;EFR3B_HUMAN_00111 H0YK72_HUMAN_00114;H0YK83_HUMAN_00114;H0YKT4_HUMAN_00064;H0YNG3_HUMAN_00 4570 HIKFLTKGDNNAV wildtype peptide Signal peptidase complex catalytic subunit SEC11A 114;H0YNX5_HUMAN_00088;SC11B_HUMAN_00101 4571 SLQNMSKQELIKE wildtype peptide Protein HEXIM1 CP4F8_HUMAN_00292;B4DU85_HUMAN_00104;B4DV75_HUMAN_00143;CP4F3_HUMAN_00292 4572 FLQAKAKSKTLDF wildtype peptide Leukotriene-B(4) omega-hydroxylase 1 A8MU03_HUMAN_00143;F5H469_HUMAN_00219;H7C3A8_HUMAN_00141 4573 SRVFYLKMKGDYY wildtype peptide 14-3-3 protein sigma 4574 KDNQAKKLSGGQK wildtype peptide ATP-binding cassette sub-family A member 5 E7ETD3_HUMAN_00614;ABCA5_HUMAN_00614 4575 SDLAKKKAAKKKE wildtype peptide ATP-binding cassette sub-family F member 2 C9JZV3_HUMAN_00009;C9JHK9_HUMAN_00009

4576 GQEVLIKVKHFMK wildtype peptide Acyl-CoA dehydrogenase family member 11 D6RDI8_HUMAN_00385;F8WEV0_HUMAN_00385;ACD11_HUMAN_00385;ACD11_HUMAN_00265 F8W6G0_HUMAN_00730;ACACA_HUMAN_01973;ACACA_HUMAN_01953;ACACA_HUMAN_0206 4577 KTYQAIKDFNREG wildtype peptide Acetyl-CoA carboxylase 1 8 B7TY16_HUMAN_00492;H7C5W8_HUMAN_00082;H9KV75_HUMAN_00427;ACTN1_HUMAN_004 4578 LGALTQKRREALE wildtype peptide Alpha-actinin-1 92;ACTN1_HUMAN_00492 4579 SNPDELKTTVEER wildtype peptide BRCA1-associated protein 4580 QMRLKEKSKRNQP wildtype peptide Bromodomain testis-specific protein A6NF68_HUMAN_00410;D3DT32_HUMAN_00483;BRDT_HUMAN_00496 4581 ANATVTKVLKDVY wildtype peptide Ribosome production factor 2 homolog 4582 NYESPGKIFLRMK wildtype peptide Mis18-binding protein 1 C9J2Q8_HUMAN_00113;G5E9K5_HUMAN_00113;M18BP_HUMAN_00113 4583 KPGRREKLLGWLR wildtype peptide Uncharacterized protein C6orf47 4584 NDGWGLKKAADGA wildtype peptide Calnexin 4585 SREECDKYALQSQ wildtype peptide 3-ketoacyl-CoA thiolase, mitochondrial

4586 EKLENDKSFRGVI wildtype peptide Enoyl-CoA delta isomerase 1, mitochondrial Q96DC0_HUMAN_00030;H3BP91_HUMAN_00081;H3BS70_HUMAN_00030;ECI1_HUMAN_00089 4587 NLRSFTKDAHALI wildtype peptide 39S ribosomal protein L39, mitochondrial C9JG87_HUMAN_00194;RM39_HUMAN_00204 Acetylome - Acetyltransferase Microarray page 128 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4588 ELGDYLKPKYLAQ wildtype peptide 39S ribosomal protein L46, mitochondrial 4589 KLPRYYKNIGLGF wildtype peptide 40S ribosomal protein S11 4590 VKEQIYKLAKKGL wildtype peptide 40S ribosomal protein S13 4591 KGVITVKDGKTLN wildtype peptide 60 kDa heat shock protein, mitochondrial E7EXB4_HUMAN_00202;F5GWR2_HUMAN_00058 4592 DDAMLLKGKGDKA wildtype peptide 60 kDa heat shock protein, mitochondrial 4593 GIIDPTKVVRTAL wildtype peptide 60 kDa heat shock protein, mitochondrial 4594 VIAELKKQSKPVT wildtype peptide 60 kDa heat shock protein, mitochondrial E7ESH4_HUMAN_00157;E7EXB4_HUMAN_00157;F5GWR2_HUMAN_00013 Q5LJ98_HUMAN_00359;Q5LJ99_HUMAN_00359;Q5LJA0_HUMAN_00359;G5E9R9_HUMAN_0008 4595 LDAAFYKTFKTVE wildtype peptide 60 kDa SS-A/Ro ribonucleoprotein 4 4596 PSAKDIKKILDSV wildtype peptide 60S acidic ribosomal protein P2 4597 VMEHFIKLYKKKT wildtype peptide 78 kDa glucose-regulated protein 4598 KAGHFDKEIVPVL wildtype peptide Acetyl-CoA acetyltransferase, cytosolic 4599 TPYGGVKLEDLIV wildtype peptide Acetyl-CoA acetyltransferase, mitochondrial 4600 QPDVVVKEDEEYK wildtype peptide Acetyl-CoA acetyltransferase, mitochondrial F8W6G0_HUMAN_00082;ACACA_HUMAN_01276;ACACA_HUMAN_01256;ACACA_HUMAN_0137 4601 TFLVAQKDFRKQV wildtype peptide Acetyl-CoA carboxylase 1 1 B3KUV2_HUMAN_00126;Q5QPH3_HUMAN_00431;E7EWU3_HUMAN_00368;F6WZD5_HUMAN_0 4602 AIRLLMKFGDEPV wildtype peptide Acetyl-coenzyme A synthetase, cytoplasmic 0416 F8VZA5_HUMAN_00036;F8W153_HUMAN_00036;F8W1E1_HUMAN_00036;ARL17_HUMAN_0003 4603 KTTILYKLKLGET wildtype peptide ADP-ribosylation factor-like protein 17 6;ARL17_HUMAN_00036 4604 AFKDKYKQLFLGG wildtype peptide ADP/ATP translocase 1 ADT2_MOUSE_00105;ADT2_RAT_00105;ADT2_BOVIN_00105;ADT2_PONAB_00105;ADT2_TACA 4605 FLGGVDKRTQFWR wildtype peptide ADP/ATP translocase 2 C_00105;ADT3_BOVIN_00105 4606 ARDEGGKAFFKGA wildtype peptide ADP/ATP translocase 2 4607 IAAAISKTAVAPI wildtype peptide ADP/ATP translocase 3 4608 SLPAPSKALSGPE wildtype peptide AF4/FMR2 family member 1 E9PBM3_HUMAN_00688;F5GXF9_HUMAN_00319;F5H1V4_HUMAN_00340 4609 LRNQKVKYVDLGG wildtype peptide Amine oxidase [flavin-containing] B B7Z242_HUMAN_00036;B7Z5H3_HUMAN_00036 Amyotrophic lateral sclerosis 2 chromosomal region candidate 4610 IVGNLEKMLQTKF wildtype peptide gene 12 protein 4611 AGLGTGKPSSFED wildtype peptide Angiogenic factor with G patch and FHA domains 1 4612 VYREELKRDLAKD wildtype peptide Annexin A1 4613 IDMNDIKAFYQKM wildtype peptide Annexin A1 ANX11_HUMAN_00255;B4DHY4_HUMAN_00186;B4DT77_HUMAN_00088;B4DVE7_HUMAN_0022 4614 DLIKDLKSELSGN wildtype peptide Annexin A7 2;E9PDK5_HUMAN_00162;ANXA7_HUMAN_00218 4615 QLVSNLKKEGSTH wildtype peptide Aspartate aminotransferase, mitochondrial D3DP78_HUMAN_00041;C9J7S3_HUMAN_00041;C9JLC1_HUMAN_00041;C9JQM9_HUMAN_000 4616 TSRAKGKQCFLVL wildtype peptide Aspartate--tRNA ligase, cytoplasmic 41;H7C278_HUMAN_00106 4617 VPPEELKPYHIRV wildtype peptide Aspartate--tRNA ligase, mitochondrial G3XAA0_HUMAN_01772;H0Y7H8_HUMAN_01299;ARI1B_HUMAN_01790;ARI1B_HUMAN_01830 4618 FDKLPIKIVKKNN wildtype peptide AT-rich interactive domain-containing protein 1B ARI1B_HUMAN_01027 B7Z7X8_HUMAN_00303;B5MCN0_HUMAN_00150;C9JQQ5_HUMAN_00139;H7C3A2_HUMAN_00 4619 DIDEDFKRELRNL wildtype peptide Atlastin-2 240;ATLA2_HUMAN_00321;ATLA2_HUMAN_00150;ATLA2_HUMAN_00303 4620 KEGDIVKRTGAIV wildtype peptide ATP synthase subunit alpha, mitochondrial 4621 GHYLDQKRLKQGL wildtype peptide ATP-citrate synthase B4E3P0_HUMAN_00806;E7ENH9_HUMAN_01131;ACLY_HUMAN_01067 B1AHC8_HUMAN_00290;B1AHC7_HUMAN_00331;B1AHC9_HUMAN_00281;F5H1I8_HUMAN_001 4622 RQIILEKEETEEL wildtype peptide X-ray repair cross-complementing protein 6 98 4623 LSSRFSKSQLDII wildtype peptide X-ray repair cross-complementing protein 5 4624 RFNNFLKALQEKV wildtype peptide X-ray repair cross-complementing protein 5 4625 KYKSEGKCFSVLG wildtype peptide X-ray repair cross-complementing protein 5 4626 EKLTPLKLIDSWM wildtype peptide ATP-dependent DNA helicase Q1 Acetylome - Acetyltransferase Microarray page 129 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4627 KQLLSLKAEYKEK wildtype peptide Bifunctional glutamate/proline--tRNA ligase E7EMN0_HUMAN_00812;F5H7I7_HUMAN_00795 Bifunctional methylenetetrahydrofolate 4628 KLAQQIKQEVRQE wildtype peptide dehydrogenase/cyclohydrolase, mitochondrial B8ZZU9_HUMAN_00050;B9A062_HUMAN_00050 4629 PNVGVNKNIFLKD wildtype peptide Biliverdin reductase A 4630 QDGAFTKWRVENS wildtype peptide Bleomycin hydrolase H3BTW0_HUMAN_00082;H3BV85_HUMAN_00081;H3BVE0_HUMAN_00079;BOLA2_HUMAN_000 4631 SAKFEGKPLLQRH wildtype peptide BolA-like protein 2 47 4632 ERTITMKQLLRAL wildtype peptide Branched-chain-amino-acid aminotransferase, mitochondrial B3KSI3_HUMAN_00281;BCAT2_HUMAN_00229 4633 GENVDEKHLPTLD wildtype peptide Carbamoyl-phosphate synthase [ammonia], mitochondrial H0YGP4_HUMAN_01299;CPSM_HUMAN_00840 4634 PASVYTKRCSEAF wildtype peptide Carnitine O-palmitoyltransferase 2, mitochondrial Q71TU5_HUMAN_00008;D6RGE5_HUMAN_00008;E5RG27_HUMAN_00008;KC1A_HUMAN_0000 4635 ASSSGSKAEFIVG wildtype peptide Casein kinase I isoform alpha 8 4636 ETFRNLKYEVRNK wildtype peptide Caspase-3 A8MVM1_HUMAN_00082;C9JXR7_HUMAN_00082;F5H531_HUMAN_00091 B4E2G8_HUMAN_00166;E5RIB1_HUMAN_00181;E5RIC3_HUMAN_00151;E5RJ41_HUMAN_0007 8;F6XBD8_HUMAN_00181;F8W845_HUMAN_00078;G3XAM7_HUMAN_00181;CTNA1_HUMAN_00 4637 IQYKALKPEVDKL wildtype peptide Catenin alpha-1 181 4638 ZZMSGGKYVDSEG wildtype peptide Caveolin-1 4639 YAAKAMKAAHDNM wildtype peptide Charged multivesicular body protein 4b 4640 LEKGLLKALKVLD wildtype peptide Chloride intracellular channel protein 1 4641 KKILASKYLKMLK wildtype peptide Chromatin accessibility complex protein 1

4642 AERLFSKSSVTSA wildtype peptide Chromatin modification-related protein MEAF6 B1AK63_HUMAN_00069;B1AK64_HUMAN_00091;EAF6_HUMAN_00091;EAF6_HUMAN_00091 CHD4_HUMAN_00987;E9PG89_HUMAN_01056;F5GWX5_HUMAN_00980;F5H2G1_HUMAN_0096 4643 MQKKYYKYILTRN wildtype peptide Chromodomain-helicase-DNA-binding protein 3 1;CHD3_HUMAN_00997;CHD4_HUMAN_00987 4644 QPPSSKKSDGSGT wildtype peptide Chromodomain-helicase-DNA-binding protein 9 H3BSP3_HUMAN_00490;CHD9_HUMAN_00490;CHD9_HUMAN_00490 4645 LLGPSSKFRHAQG wildtype peptide Coronin-7 B3KSY4_HUMAN_00252;E7EP81_HUMAN_00304;CORO7_HUMAN_00387 4646 GSQGDSKNAKKKN wildtype peptide CREB-binding protein 4647 NNKKTNKNKSSIS wildtype peptide CREB-binding protein 4648 GYCCGRKYEFSPQ wildtype peptide CREB-binding protein H0YMH7_HUMAN_00057;H0YNU2_HUMAN_00057;H0YNW9_HUMAN_00057;CTSL2_HUMAN_00 4649 SIKKFIKGSTPKE wildtype peptide CTD small phosphatase-like protein 2 057 4650 KARVLIKSPKGKE wildtype peptide Cullin-4A A8MSH7_HUMAN_00641;CUL4A_HUMAN_00541 4651 GKSTFVKLLTKTY wildtype peptide Deoxyguanosine kinase, mitochondrial 4652 EEIAFLKKVHEEE wildtype peptide Desmin 4653 DRSLQDKYLLRLV wildtype peptide Deubiquitinating protein VCIP135 B9ZVX0_HUMAN_01079;E7ERW8_HUMAN_01046;E7ET75_HUMAN_01095;E9PEZ2_HUMAN_01 094;E9PEZ3_HUMAN_01100;E9PHQ0_HUMAN_01091;H9KV28_HUMAN_01104;DIAP1_HUMAN_0 4654 AQEQYNKLRMMHS wildtype peptide Protein diaphanous homolog 1 1079 B4DHG0_HUMAN_00168;B4DT69_HUMAN_00219;F5H4I0_HUMAN_00217;E9PEX6_HUMAN_002 4655 FQRILQKQGFKFK wildtype peptide Dihydrolipoyl dehydrogenase, mitochondrial 44 B4DHG0_HUMAN_00321;B4DT69_HUMAN_00372;F5H4I0_HUMAN_00370;E9PEX6_HUMAN_003 4656 IEYKVGKFPFAAN wildtype peptide Dihydrolipoyl dehydrogenase, mitochondrial 97 4657 GPDFGKKRLGLPG wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_02702;PRKDC_HUMAN_02703 4658 KKSETLKFSTEHR wildtype peptide DnaJ homolog subfamily C member 13 4659 EPGAEEKFKEIAE wildtype peptide DnaJ homolog subfamily B member 1 4660 QAGFKAKLVTLLS wildtype peptide Docking protein 3 4661 KDAIIAKLANQAA wildtype peptide Programmed cell death 6-interacting protein E9PFU1_HUMAN_00215;F8WDK9_HUMAN_00025 B4DDD6_HUMAN_00264;B4DDP6_HUMAN_00240;B4DDU5_HUMAN_00218;B4DEM2_HUMAN_0 0185;C9J7P1_HUMAN_00194;H0Y5J4_HUMAN_00217;DBNL_HUMAN_00289;DBNL_HUMAN_002 4662 RSPFLQKQLTQPE wildtype peptide Drebrin-like protein 97 Acetylome - Acetyltransferase Microarray page 130 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B4DMC6_HUMAN_00235;B4DPU3_HUMAN_00235;F5GZG3_HUMAN_00235;F5H370_HUMAN_00 4663 AEMYVAKFAAKGE wildtype peptide Elongation factor 2 235 4664 TAKLIEKLDIKLD wildtype peptide Elongation factor 2 B4DMC6_HUMAN_00318;F5GZG3_HUMAN_00318;F5H370_HUMAN_00318 4665 IFVLGPKYSPLEF wildtype peptide Elongation factor Tu GTP-binding domain-containing protein 1 4666 QPMILEKGQRFTL wildtype peptide Elongation factor Tu, mitochondrial 4667 NNQVLGKIERAIG wildtype peptide Endothelial differentiation-related factor 1 4668 SDKSFSKDLSQIL wildtype peptide Enhancer of polycomb homolog 1 EPC1_HUMAN_00512;EPC1_HUMAN_00462 B4DUC5_HUMAN_00607;E7ENK9_HUMAN_00615;E7EPX1_HUMAN_00422;F5GX54_HUMAN_00 4669 FGMVLEKIIIPEI wildtype peptide Exportin-2 513;F8W904_HUMAN_00768;XPO2_HUMAN_00824 4670 PLRKGTKHLSPYA wildtype peptide Extended synaptotagmin-1 B3KY56_HUMAN_00771;ESYT1_HUMAN_00827 4671 FHLHGEKGKLGQY wildtype peptide Na(+)/H(+) exchange regulatory cofactor NHE-RF1 4672 TKIDWNKILSYKI wildtype peptide F-actin-capping protein subunit alpha-2 CAZA1_HUMAN_00273;B4DE01_HUMAN_00196;A8MW68_HUMAN_00273 4673 QPFHFIKDPKNLT wildtype peptide F-box only protein 22 H3BUC1_HUMAN_00090;H3BVA4_HUMAN_00080;FBX22_HUMAN_00194 4674 ARGKRRKGKGKGK wildtype peptide F-box and WD-40 domain protein 4, isoform CRA_b 4675 GSLSSAKRKEPEP wildtype peptide Flap endonuclease 1 E9PGQ4_HUMAN_00027;H7BY87_HUMAN_00027;FNBP1_HUMAN_00027;FNBP1_HUMAN_0002 4676 GIDILEKYIKFVK wildtype peptide Formin-binding protein 1 7;FNBP1_HUMAN_00027 B7Z6U8_HUMAN_00213;Q5JXI8_HUMAN_00233;F5GWR5_HUMAN_00273;FHL1_HUMAN_00233 4677 PITGFGKGSSVVA wildtype peptide Four and a half LIM domains protein 1 FHL1_HUMAN_00262;FHL1_HUMAN_00249 H3BPH5_HUMAN_00098;H3BR68_HUMAN_00096;H3BRS7_HUMAN_00074;H3BT43_HUMAN_00 4678 AQEEYVKRALANS wildtype peptide Fructose-bisphosphate aldolase A 166 4679 RSTMNFKIGGVTE wildtype peptide Fumarate hydratase, mitochondrial 4680 RIGFAEKVAAKVA wildtype peptide Fumarate hydratase, mitochondrial 4681 AITATQKTVDGPS wildtype peptide Glyceraldehyde-3-phosphate dehydrogenase E7EPW1_HUMAN_00012;E7EUT4_HUMAN_00144;E7EUT5_HUMAN_00111 4682 YKKRFHKFDADQK wildtype peptide Glycerol-3-phosphate dehydrogenase, mitochondria F8W6E4_HUMAN_00407;GPDM_HUMAN_00508 4683 FADFMVKDVKNGE wildtype peptide Glycine--tRNA ligase 4684 WFAKHNKPKASGZ wildtype peptide Glyoxalase domain-containing protein 4 B7Z403_HUMAN_00284;E7EMY5_HUMAN_00496;GLOD4_HUMAN_00293 4685 PLKDFHKDEVRIL wildtype peptide GMP synthase [glutamine-hydrolyzing] B4DUT7_HUMAN_00365;F8W720_HUMAN_00317 B7Z8E3_HUMAN_00034;B7Z8F8_HUMAN_00080;F5H1V3_HUMAN_00066;F5H548_HUMAN_0004 4686 DDVQHFKVMRDNK wildtype peptide GRB2-related adapter protein 2 0 4687 KFENLCKIMKDIL wildtype peptide Heat shock protein HSP 90-alpha Q86U12_HUMAN_00394;HS90A_HUMAN_00695 4688 NLCKLMKEILDKK wildtype peptide Heat shock protein HSP 90-beta 4689 RNPPGGKSSLVLG wildtype peptide Hematological and neurological expressed 1 protein F5GY98_HUMAN_00102;HN1_HUMAN_00102 4690 ARGLKAKFESMAE wildtype peptide Hematopoietic lineage cell-specific protein 4691 KGCTIVKPFNLSQ wildtype peptide Targeting protein for Xklp2 Q5SWC8_HUMAN_00152;B0QZK4_HUMAN_00076;HP1B3_HUMAN_00152;HP1B3_HUMAN_0003 4692 RKYIIHKYPSLEL wildtype peptide Heterochromatin protein 1-binding protein 3 8 4693 AAKLKEKYEKDIA wildtype peptide High mobility group protein B1 HMGB2_HUMAN_00154;HGB1A_HUMAN_00154 E5RIT9_HUMAN_00007;H7BYM6_HUMAN_00007;HMGA1_HUMAN_00007;HMGA1_HUMAN_0000 4694 MSESSSKSSQPLA wildtype peptide High mobility group protein HMG-I/HMG-Y 7 B3KWE1_HUMAN_00374;B4DDD8_HUMAN_00369;B4DY73_HUMAN_00403;B4E1C5_HUMAN_00 4695 KAELLYKKNPKLL wildtype peptide Histidine--tRNA ligase, cytoplasmic 329;C9JWK3_HUMAN_00248;D6REN6_HUMAN_00423 4696 KQNTVSKGPFSKV wildtype peptide Histone acetyltransferase KAT6A 4697 SPPILTKPTLKRK wildtype peptide Histone acetyltransferase KAT6A 4698 PAKVQSKNKYLHS wildtype peptide Histone acetyltransferase KAT6B KAT6B_HUMAN_00859;KAT6B_HUMAN_00750 4699 SKKAITKAQKKDG wildtype peptide Histone H2B type 1-B Acetylome - Acetyltransferase Microarray page 131 of 167

Sequence PEP_FLAG Protein name Uniprot IDs

H2B1J_HUMAN_00086;H2B1O_HUMAN_00086;H2B1B_HUMAN_00086;H2B1D_HUMAN_00086;H 2B1C_HUMAN_00086;H2B2E_HUMAN_00086;H2B2F_HUMAN_00086;H2B3B_HUMAN_00086;H2 B1H_HUMAN_00086;H2B1N_HUMAN_00086;H2B1M_HUMAN_00086;H2B1L_HUMAN_00086;B4D 4700 RLAHYNKRSTITS wildtype peptide Histone H2B type 1-K R52_HUMAN_00086;H2B2C_HUMAN_00086;H2B2D_HUMAN_00086;H2B2F_HUMAN_00086

H2B1J_HUMAN_00017;H2B1O_HUMAN_00017;H2BFS_HUMAN_00017;H2B1D_HUMAN_00017;H 2B1C_HUMAN_00017;H2B2E_HUMAN_00017;H2B3B_HUMAN_00017;H2B1H_HUMAN_00017;H2 4701 PKKGSKKAVTKAQ wildtype peptide Histone H2B type 1-K B1N_HUMAN_00017;H2B1L_HUMAN_00017;H2B2C_HUMAN_00017;H2B2D_HUMAN_00017

4702 ZMPDPAKSAPAPK wildtype peptide Histone H2B type 1-O H2B2F_HUMAN_00007;H2B1H_HUMAN_00007;B4DR52_HUMAN_00007;H2B2F_HUMAN_00007

H2B1B_HUMAN_00121;H2B1D_HUMAN_00121;H2B1C_HUMAN_00121;H2B2E_HUMAN_00121;H 2B2F_HUMAN_00121;H2B3B_HUMAN_00121;H2B1H_HUMAN_00121;H2B1A_HUMAN_00122;H2 4703 GTKAVTKYTSSKZ wildtype peptide Histone H2B type 1-O B1N_HUMAN_00121;H2B1M_HUMAN_00121;H2B1L_HUMAN_00121;H2B2F_HUMAN_00121 4704 VPKKGSKKAINKA wildtype peptide Histone H2B type 1-M 4705 KLVEVIKTPMTSQ wildtype peptide Hydroxyacyl-coenzyme A dehydrogenase, mitochondria E9PF18_HUMAN_00189;HCDH_HUMAN_00244 Isoform 2 of Hydroxyacyl-coenzyme A dehydrogenase, 4706 LKGDASKEDIDTA wildtype peptide mitochondrial 4707 IHAQWQKEGNDKD wildtype peptide Hydroxymethylglutaryl-CoA synthase, cytoplasmic 4708 NNVEAGKYTVGLG wildtype peptide Hydroxymethylglutaryl-CoA synthase, mitochondria F5H8J6_HUMAN_00083;HMCS2_HUMAN_00083 4709 FGKDVLKLVEARP wildtype peptide Importin subunit beta-1 B7ZAV6_HUMAN_00690;F5H4R7_HUMAN_00619 4710 TDHIPEKKFKSEA wildtype peptide Inhibitor of growth protein 3 4711 FYQMYDKGLVYRS wildtype peptide Isoleucine--tRNA ligase, mitochondrial 4712 GFTLGEKGEKMSK wildtype peptide Isoleucine--tRNA ligase, mitochondrial 4713 RFATYTKENGRTL wildtype peptide Lysine-specific demethylase 3B H0YH24_HUMAN_00151;KDM3B_HUMAN_00017 4714 NRRLESKIREHLE wildtype peptide Keratin, type I cytoskeletal 18 4715 EELLFMKKNHEEA wildtype peptide Keratin, type I cytoskeletal 18 Q8IWY7_HUMAN_00369;F8VXB4_HUMAN_00145;F8VRG4_HUMAN_00117;F8VU64_HUMAN_001 4716 FLEQQNKMLETKW wildtype peptide Keratin, type II cytoskeletal 8 17;F8VUG2_HUMAN_00117;F8W1U3_HUMAN_00157 4717 RLIHLNKIDPHAP wildtype peptide LanC-like protein 1 4718 GISGIFKSHDYRK wildtype peptide Lariat debranching enzyme 4719 AEKELEKKFQQTA wildtype peptide Leucine zipper transcription factor-like protein 1 B3KSI9_HUMAN_00246;H7C488_HUMAN_00199 4720 YFHQLEKMNVKIP wildtype peptide Leucine-rich PPR motif-containing protein, mitochondrial 4721 AQLKNLKWLDLKD wildtype peptide Leucine-rich repeat-containing protein 59 4722 GRLFGEKFRHFNA wildtype peptide Leukotriene A-4 hydrolase F8VV40_HUMAN_00313;LKHA4_HUMAN_00337;LKHA4_HUMAN_00313 4723 KMKPQGKPSSLMN wildtype peptide Mediator of RNA polymerase II transcription subunit 1 4724 AVIDKLKHGVVTS wildtype peptide Mediator of RNA polymerase II transcription subunit 1 B4DJE7_HUMAN_00023;B7Z9I1_HUMAN_00176;Q5T4U5_HUMAN_00245;ACADM_HUMAN_0021 4725 RSDPDPKAPANKA wildtype peptide Medium-chain specific acyl-CoA dehydrogenase, mitochondrial 6 4726 EIRVGCKYQAEIP wildtype peptide Metastasis-associated protein MTA2 4727 ZZZMERKRWECPA wildtype peptide Methyl-CpG-binding domain protein 3 4728 RKSPSGKKFRSKP wildtype peptide Isoform 2 of Methyl-CpG-binding domain protein 3 Q708E1_HUMAN_00471;E9PI07_HUMAN_00436;E9PJF1_HUMAN_00471;E9PLN0_HUMAN_0047 1;E9PLZ5_HUMAN_00471;E9PNA4_HUMAN_00576;E9PNL6_HUMAN_00589;E9PQQ2_HUMAN_0 0471;E9PRS2_HUMAN_00386;F8W8G5_HUMAN_00471;MYB_HUMAN_00468;MYB_HUMAN_005 4729 RTPTPFKHALAAQ wildtype peptide Transcriptional activator Myb 92;MYB_HUMAN_00471 4730 IKSTPVKLMRIQH wildtype peptide Myb-related protein A 4731 VESANEKAEREAL wildtype peptide Histone-lysine N-methyltransferase MLL2 Acetylome - Acetyltransferase Microarray page 132 of 167

Sequence PEP_FLAG Protein name Uniprot IDs F5H3W9_HUMAN_00266;F5H6E2_HUMAN_00261;F5H730_HUMAN_00250;MYO1C_HUMAN_002 4732 NDKSDWKVVRKAL wildtype peptide Unconventional myosin-Ic 50;MYO1C_HUMAN_00266 4733 TPHTEEKYKKINE wildtype peptide Myocyte-specific enhancer factor 2A MEF2A_HUMAN_00114;MEF2A_HUMAN_00114 F8W966_HUMAN_00268;F6XG23_HUMAN_00200;MEF2A_HUMAN_00268;MEF2A_HUMAN_0027 0;MEF2A_HUMAN_00268;MEF2A_HUMAN_00270;MEF2A_HUMAN_00268;MEF2A_HUMAN_0020 4734 LGMNSRKPDLRVV wildtype peptide Myocyte-specific enhancer factor 2A 0

4735 RKMREWKLWEPLV wildtype peptide NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 Q5H9R2_HUMAN_00098;H7BYD0_HUMAN_00094 4736 YGEIFEKFHPIRZ wildtype peptide NADH dehydrogenase [ubiquinone] 1 subunit C2 E9PRB2_HUMAN_00091;E9PRJ5_HUMAN_00066 B1AHF3_HUMAN_00019;F8WCX7_HUMAN_00019;NB5R3_HUMAN_00019;NB5R3_HUMAN_0007 4737 LESPDIKYPLRLI wildtype peptide NADH-cytochrome b5 reductase 3 5 B4DJ81_HUMAN_00354;E7ENF3_HUMAN_00434;NDUS1_HUMAN_00484;NDUS1_HUMAN_0035 4738 QVLKEAKKPMVVL wildtype peptide NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial 9;NDUS1_HUMAN_00413 E9PAV3_HUMAN_01971;F8VNW4_HUMAN_00104;F8VU71_HUMAN_00818;F8VZ58_HUMAN_001 08;F8VZJ2_HUMAN_00029;F8W0W4_HUMAN_00108;F8W1N5_HUMAN_00029;H0YHX9_HUMAN 4739 ILFVITKPDVYKS wildtype peptide Nascent polypeptide-associated complex subunit alpha _00106;NACP1_HUMAN_00107 4740 ZZZZMIKLFSLKQ wildtype peptide NEDD8-conjugating enzyme Ubc12 4741 DPASNTKLIAMKT wildtype peptide Nuclear receptor coactivator 2 4742 GAITKGKPYDGIT wildtype peptide Nuclear receptor corepressor 1 E7EVK1_HUMAN_01243;NCOR1_HUMAN_01352 NCOR2_HUMAN_01218;C9J0Q5_HUMAN_01200;C9J239_HUMAN_01201;C9J7T7_HUMAN_0077 1;C9JE98_HUMAN_01200;C9JFD3_HUMAN_01210;C9JJF6_HUMAN_01209;NCOR2_HUMAN_012 4743 PGGSITKGIPSTR wildtype peptide Nuclear receptor corepressor 2 (Fragment) 10;NCOR2_HUMAN_01201;NCOR2_HUMAN_01201 C9J0Q5_HUMAN_02016;C9J239_HUMAN_02017;C9J7T7_HUMAN_01587;C9JE98_HUMAN_0201 6;C9JFD3_HUMAN_02026;C9JJF6_HUMAN_02025;H0Y5V2_HUMAN_00118;NCOR2_HUMAN_003 4744 REKTQSKPFSIQE wildtype peptide Nuclear receptor corepressor 2 27;NCOR2_HUMAN_02029;NCOR2_HUMAN_02020;NCOR2_HUMAN_02020 4745 QIRQSLKEQGYAL wildtype peptide Nuclear receptor-interacting protein 1 4746 VPDVDIKEDQDTS wildtype peptide Nuclear receptor-interacting protein 1 D6R9T5_HUMAN_00104;D6RBN5_HUMAN_00104;D6RDK1_HUMAN_00077;D6RDK6_HUMAN_00 077;D6RG39_HUMAN_00131;D6RI08_HUMAN_00077;D6RIT9_HUMAN_00131;D6RIV2_HUMAN_0 4747 PGHYYQKSKYDSS wildtype peptide OCIA domain-containing protein 1 0077;G8JLN7_HUMAN_00131;OCAD1_HUMAN_00131;OCAD1_HUMAN_00131 4748 LGMIFEKRSTRTR wildtype peptide Ornithine carbamoyltransferase, mitochondrial B1ANR0_HUMAN_00104;B1ANR1_HUMAN_00104;H0YEQ8_HUMAN_00048;PABP4_HUMAN_001 4749 VGNVFIKNLDKSI wildtype peptide Polyadenylate-binding protein 4 04;PABP4_HUMAN_00104 4750 REVLGIKRDKSDS wildtype peptide Paired amphipathic helix protein Sin3a 4751 AAELSAKDLKEKK wildtype peptide Parathymosin A2VCM6_HUMAN_00014;F5GXR3_HUMAN_00015;F5H7R9_HUMAN_00015 Q5VWU8_HUMAN_00974;Q5VWV2_HUMAN_00947;F5GZI3_HUMAN_00720;F5H5T0_HUMAN_00 991;PARD3_HUMAN_00973;PARD3_HUMAN_01004;PARD3_HUMAN_00917;PARD3_HUMAN_01 007;PARD3_HUMAN_00932;PARD3_HUMAN_00961;PARD3_HUMAN_00961;PARD3_HUMAN_01 4752 KDRDKEKDKMKAK wildtype peptide Partitioning defective 3 homolog 004;PARD3_HUMAN_00961 4753 YKEEGLKAFYKGV wildtype peptide Phosphate carrier protein, mitochondrial F8VVM2_HUMAN_00213;MPCP_HUMAN_00213 4754 VENFIHKQERRLF wildtype peptide Phosphatidylinositol transfer protein alpha isoform F5GWC2_HUMAN_00142;F5GWE5_HUMAN_00215 F5GXI6_HUMAN_00358;H7C292_HUMAN_00123;H7C2V3_HUMAN_00123;SHIP1_HUMAN_00370 4755 KEKILRKEYVFAD wildtype peptide Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 SHIP1_HUMAN_00158 4756 DRRFVIKTVSSED wildtype peptide Phosphatidylinositol 5-phosphate 4-kinase type-2 beta C9JMM2_HUMAN_00150;PI42B_HUMAN_00150 4757 VGPYVKKILCEEL wildtype peptide Phosphoglucomutase-1 B4DPV0_HUMAN_00038;F5H857_HUMAN_00211;PGM1_HUMAN_00253 4758 AAVPSIKFCLDNG wildtype peptide Phosphoglycerate kinase 1 B7Z7A9_HUMAN_00020;E7ERH5_HUMAN_00048 Acetylome - Acetyltransferase Microarray page 133 of 167

Sequence PEP_FLAG Protein name Uniprot IDs PCBP1_HUMAN_00023;PCBP2_HUMAN_00023;B4DLC0_HUMAN_00023;B4DXP5_HUMAN_0002 3;E9PFP8_HUMAN_00023;F8VRG9_HUMAN_00023;F8VTZ0_HUMAN_00023;F8VZX2_HUMAN_00 023;F8W0G4_HUMAN_00023;F8W1G6_HUMAN_00020;G3V0E8_HUMAN_00023;H3BSP4_HUMA N_00023;PCBP3_HUMAN_00055;PCBP3_HUMAN_00055;PCBP3_HUMAN_00055;PCBP3_HUMA N_00055;PCBP2_HUMAN_00023;PCBP2_HUMAN_00023;PCBP2_HUMAN_00023;PCBP2_HUMA 4759 RLLMHGKEVGSII wildtype peptide Poly(rC)-binding protein 3 N_00023 PABP3_HUMAN_00213;E7EQV3_HUMAN_00168;E7ERJ7_HUMAN_00181;H0YAP2_HUMAN_000 11;H0YBN4_HUMAN_00160;H0YBQ4_HUMAN_00046;H3BNY3_HUMAN_00213;H3BPI5_HUMAN_ 4760 LKDLFGKFGPALS wildtype peptide Polyadenylate-binding protein 1 00213;PABP1_HUMAN_00213 EPAB2_HUMAN_00182;B4DEH8_HUMAN_00079;G3V4T2_HUMAN_00079;EPAB2_HUMAN_0018 4761 VTILCDKFSGHPK wildtype peptide Polyadenylate-binding protein 2 2;EPAB2_HUMAN_00182;PABP2_HUMAN_00207;B2CL2_HUMAN_00234 4762 IVKYTHKLAMERL wildtype peptide Polyribonucleotide nucleotidyltransferase 1, mitochondria 4763 IRNLPYKITAEEM wildtype peptide Pre-mRNA branch site protein p14 4764 RPYFHVKPLEKAQ wildtype peptide Pre-mRNA-processing factor 39 B4DDC6_HUMAN_00035;B4DHP2_HUMAN_00035;B4DP11_HUMAN_00035;B4DP21_HUMAN_00 4765 VNFEKSKLTFSCL wildtype peptide Prostaglandin E synthase 3 035 4766 KVEPITKHIGLVY wildtype peptide Proteasome subunit alpha type-2 4767 IVHDEVKDKAFEL wildtype peptide Proteasome subunit alpha type-3 G3V4X5_HUMAN_00131;H0YJ03_HUMAN_00034;PSA3_HUMAN_00199 H0YKT8_HUMAN_00152;H0YL69_HUMAN_00176;H0YMA1_HUMAN_00176;H0YMI6_HUMAN_001 50;H0YMZ1_HUMAN_00176;H0YKS0_HUMAN_00088;H0YN18_HUMAN_00145;PSA4_HUMAN_00 4768 AAVSMLKQDYKEG wildtype peptide Proteasome subunit alpha type-4 105 B4DQR4_HUMAN_00025;B4DXJ9_HUMAN_00085;G3V295_HUMAN_00104;G3V3I1_HUMAN_001 4769 AANWKYKYGYEIP wildtype peptide Proteasome subunit alpha type-6 04;G3V5Z7_HUMAN_00104 4770 KNVQLYKMRNGYE wildtype peptide Proteasome subunit beta type-2 4771 ZMSALEKSMHLGR wildtype peptide Protein phosphatase methylesterase 1 Q9H4P6_HUMAN_00083;D6RAY9_HUMAN_00090;D6RCQ4_HUMAN_00079;D6REL4_HUMAN_00 4772 KKSYYAKLRQQEI wildtype peptide Protein Red 083;E7EQZ7_HUMAN_00083 B7Z1U4_HUMAN_00230;D3DQU6_HUMAN_00040;E9PK46_HUMAN_00230;F5GZ89_HUMAN_001 4773 RVMKEGKFIDRFS wildtype peptide Protein RIC-3 53;RIC3_HUMAN_00201 4774 LRVLMEKEFPGFL wildtype peptide Protein S100-A10 4775 MACPLEKALDVMV wildtype peptide Protein S100-A4 4776 LKELIQKELTIGS wildtype peptide Protein S100-A6

Pyruvate dehydrogenase E1 component subunit alpha, somatic ODPAT_HUMAN_00075;Q5JPT9_HUMAN_00077;Q5JPU0_HUMAN_00077;Q5JPU1_HUMAN_001 4777 VRRMELKADQLYK wildtype peptide form, mitochondrial 15;Q5JPU2_HUMAN_00105;ODPA_HUMAN_00077;ODPA_HUMAN_00077;ODPA_HUMAN_00115 Pyruvate dehydrogenase E1 component subunit beta, 4778 DIIFAIKKTLNIZ wildtype peptide mitochondrial ODPB_HUMAN_00336;ODPB_HUMAN_00336 E7EUQ8_HUMAN_00146;E9PF79_HUMAN_00093;H3BQ34_HUMAN_00166;H3BTN5_HUMAN_00 4779 DYKNICKVVEVGS wildtype peptide Pyruvate kinase isozymes M1/M2 166;KPYM_HUMAN_00166;KPYM_HUMAN_00151 KPYR_HUMAN_00348;Q504U3_HUMAN_00140;E7ESY9_HUMAN_00373;E7EUJ4_HUMAN_00140 ;E7EUQ8_HUMAN_00285;E9PF79_HUMAN_00232;H3BSU3_HUMAN_00089;H3BTN5_HUMAN_00 4780 IEIPAEKVFLAQK wildtype peptide Pyruvate kinase isozymes M1/M2 305;KPYM_HUMAN_00305;KPYM_HUMAN_00290;KPYR_HUMAN_00317

4781 GKVIGVKSEGEIA wildtype peptide Rab GDP dissociation inhibitor beta Q5SX91_HUMAN_00097;E7EU23_HUMAN_00273;E9PFL7_HUMAN_00102;GDIB_HUMAN_00224 4782 SRLARVKPLHPNA wildtype peptide RAD51-associated protein 1 B4DUS5_HUMAN_00224;R51A1_HUMAN_00326;R51A1_HUMAN_00293 4783 RGSYSIKSRFTDD wildtype peptide Rho GDP-dissociation inhibitor 1 F5H2R5_HUMAN_00047;F5H3P3_HUMAN_00047;F5H6Q0_HUMAN_00047;H0YGX7_HUMAN_000 4784 DDESLIKYKKTLL wildtype peptide Rho GDP-dissociation inhibitor 2 42 F5H2R5_HUMAN_00030;F5H3P3_HUMAN_00030;F5H6Q0_HUMAN_00030;H0YGX7_HUMAN_000 4785 YKPPPQKSLKELQ wildtype peptide Rho GDP-dissociation inhibitor 2 25 4786 RRIEFYKESKQQA wildtype peptide Rho GTPase-activating protein 15 Acetylome - Acetyltransferase Microarray page 134 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4787 ARKDLEKLVRKVL wildtype peptide Rho guanine nucleotide exchange factor 7 B1ALK7_HUMAN_00686;ARHG7_HUMAN_00627;ARHG7_HUMAN_00712 4788 AKEDYTKFNTKDL wildtype peptide Ribonuclease H2 subunit B B7Z9F1_HUMAN_00160;G3V2Y4_HUMAN_00020;G3V4W5_HUMAN_00181;G3V540_HUMAN_001 4789 GYMSDVKRISATS wildtype peptide Serine hydroxymethyltransferase, mitochondrial 60;G3V5L0_HUMAN_00160;G3V2D2_HUMAN_00020;GLYM_HUMAN_00181 B4DLV4_HUMAN_00260;B7Z9F1_HUMAN_00335;G3V2Y4_HUMAN_00195;H0YIZ0_HUMAN_0015 4790 YSLQVLKNARAMA wildtype peptide Serine hydroxymethyltransferase, mitochondrial 6;GLYM_HUMAN_00346 4791 LMRLQEKLKGVEE wildtype peptide Serine-protein kinase ATM 4792 PPRQKDKFSPFPV wildtype peptide Serine/arginine repetitive matrix protein 2 F5GWZ7_HUMAN_00438;SRRM2_HUMAN_01186 B3KNX7_HUMAN_00029;E9PKH9_HUMAN_00029;E9PMP2_HUMAN_00029;E9PQW5_HUMAN_0 4793 MIGAGSKDAGTLN wildtype peptide Serine/threonine-protein kinase PAK 1 0029;E9PRP6_HUMAN_00029;PAK1_HUMAN_00029 4794 RRSLSPKPRDKSR wildtype peptide Serine/threonine-protein kinase PRP4 homolog 4795 RFKINKKIPRGPP wildtype peptide SNW domain-containing protein 1 E9PGQ7_HUMAN_00217;G3V3A4_HUMAN_00217;G3V4X8_HUMAN_00055 4796 DFEQISKTIRKEV wildtype peptide Sorting nexin-2 B4DGT1_HUMAN_00613;A6NG51_HUMAN_00613;F8W7K3_HUMAN_00613;SPTA2_HUMAN_006 4797 LQGKVQKHQAFEA wildtype peptide Spectrin alpha chain, brain 13;SPTA2_HUMAN_00613 A6NG51_HUMAN_02057;A6NN88_HUMAN_00301;F8W7K3_HUMAN_02032;SPTA2_HUMAN_020 4798 AKHVQSKAIEARH wildtype peptide Spectrin alpha chain, brain 57;SPTA2_HUMAN_02032 B4DGT1_HUMAN_01266;A6NG51_HUMAN_02431;F8W7K3_HUMAN_02406;SPTA2_HUMAN_024 4799 GKPYVTKEELYQN wildtype peptide Spectrin alpha chain, brain 31;SPTA2_HUMAN_02406

4800 YASEEIKEKLLQL wildtype peptide Spectrin beta chain, brain 1 B2ZZ89_HUMAN_01989;D6W5C0_HUMAN_01903;SPTB2_HUMAN_01989;SPTB2_HUMAN_01976 4801 EVQKDIKNVPFKI wildtype peptide Stress-70 protein, mitochondrial B7Z4V2_HUMAN_00124;D6RJI2_HUMAN_00069 4802 TGVDLTKDNMALQ wildtype peptide Stress-70 protein, mitochondrial B7Z4V2_HUMAN_00286;F5H3L8_HUMAN_00253 4803 IHDTETKMEEFKD wildtype peptide Stress-70 protein, mitochondrial B7Z4V2_HUMAN_00581;F5H3L8_HUMAN_00548 Structural maintenance of chromosomes flexible hinge domain- 4804 VKAIYNKSIIEGP wildtype peptide containing protein 1 SMHD1_HUMAN_01349;SMHD1_HUMAN_00284 4805 YQIAVTKVLGKNM wildtype peptide Structural maintenance of chromosomes protein 1A 4806 SYLEYQKVMREIE wildtype peptide Structural maintenance of chromosomes protein 2 Q5T821_HUMAN_00077;F5GZR0_HUMAN_00222;SMC2_HUMAN_00222 4807 ISESFQKALEKGI wildtype peptide T-complex protein 1 subunit delta B7Z9L0_HUMAN_00083;F5H5W3_HUMAN_00109 4808 MKIMVIKDIERED wildtype peptide T-complex protein 1 subunit delta B7Z2F4_HUMAN_00176;B7Z9L0_HUMAN_00270;F5H5W3_HUMAN_00296 B4DYD8_HUMAN_00306;B7ZAR1_HUMAN_00361;E7EWW2_HUMAN_00372;E9PCA1_HUMAN_0 4809 MIIEEAKRSLHDA wildtype peptide T-complex protein 1 subunit epsilon 0378;E7ENZ3_HUMAN_00344 4810 DSSLEYKKGESQT wildtype peptide T-complex protein 1 subunit gamma B4DUR8_HUMAN_00203;E9PAQ6_HUMAN_00247;TCPG_HUMAN_00210 4811 DGVNTFKVLTRDK wildtype peptide T-complex protein 1 subunit theta B4DEM7_HUMAN_00381;B4DQH4_HUMAN_00327;G5E9B2_HUMAN_00399 4812 IMEMKHKSETDTS wildtype peptide T-complex protein 1 subunit zeta B4DPJ8_HUMAN_00168;A6NCD2_HUMAN_00154 4813 SATMSDKPDMAEI wildtype peptide TMSB4X protein 4814 QRPKRVKPFMTGA wildtype peptide TPT1-like protein 4815 LLQDNAKLVPVLS wildtype peptide Transaldolase 4816 GHEFIVKREHALT wildtype peptide Transcription elongation factor B polypeptide 1 E5RGD9_HUMAN_00016;E5RHG8_HUMAN_00032;E5RJ89_HUMAN_00032 4817 ZZZZMAKDAGLIE wildtype peptide Transcription factor Dp-1 Q5JSB5_HUMAN_00007;Q5JSB6_HUMAN_00007 MAFK_HUMAN_00060;MAFF_HUMAN_00060;B0QY70_HUMAN_00060;B0QY71_HUMAN_00031;M 4818 QRRRTLKNRGYAA wildtype peptide Transcription factor MafG AFF_HUMAN_00031 4819 KVIIVVKDGPGFY wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 4820 IVEKLEKSTKPIV wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 4821 LMLDLNKAKSMGQ wildtype peptide Trifunctional enzyme subunit beta, mitochondrial B4E2W0_HUMAN_00166;D6W539_HUMAN_00189;F5GZQ3_HUMAN_00173 B4E2W0_HUMAN_00269;B5MD38_HUMAN_00168;D6W539_HUMAN_00292;F5GZQ3_HUMAN_00 4822 SLEQMAKLKPAFI wildtype peptide Trifunctional enzyme subunit beta, mitochondrial 276 4823 FVGGNWKMNGRKQ wildtype peptide Triosephosphate isomerase 4824 RSHEFYKFCSLPE wildtype peptide Tripeptidyl-peptidase 2 4825 YLFTGLKLRLQEE wildtype peptide Ubiquitin carboxyl-terminal hydrolase 14 B7Z4N8_HUMAN_00280;A6NJA2_HUMAN_00256 Acetylome - Acetyltransferase Microarray page 135 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4826 NFEPGKKNFLHLT wildtype peptide Ubiquitin carboxyl-terminal hydrolase 47 E9PM46_HUMAN_00102;F5H2J6_HUMAN_00122;UBP47_HUMAN_00034 B7Z7T5_HUMAN_00770;B7Z815_HUMAN_00853;F5H8E5_HUMAN_00770;H3BND8_HUMAN_007 4827 DLLQFFKPRQPKK wildtype peptide Ubiquitin carboxyl-terminal hydrolase 7 70 4828 SEDTLLKDAAKVC wildtype peptide Ubiquitin carboxyl-terminal hydrolase isozyme L1 A6NLJ7_HUMAN_00114;D6RBT8_HUMAN_00195;D6RE83_HUMAN_00179 4829 QIKNRMKKTDWLF wildtype peptide Ubiquitin thioesterase ZRANB1 C9J8Q9_HUMAN_00027;C9JZY6_HUMAN_00060;A4D1L6_HUMAN_00060;C9JZG9_HUMAN_0007 4830 RVDLPDKYPFKSP wildtype peptide Ubiquitin-conjugating enzyme E2 H 6;H7C4M9_HUMAN_00052 4831 DELMDSKLRCVFE wildtype peptide Vesicle-associated membrane protein-associated protein A A8MVA9_HUMAN_00028;D6RD66_HUMAN_00032;H7C4D6_HUMAN_00027;WDR1_HUMAN_0002 4832 IIGGDPKGNNFLY wildtype peptide WD repeat-containing protein 1 8 4833 NQTEVVKIIEKDV wildtype peptide DBIRD complex subunit ZNF326 F5H641_HUMAN_00216;F8VQQ3_HUMAN_00192;F8VR84_HUMAN_00104;H3BPH3_HUMAN_000 4834 EIVELAKGACPWK wildtype peptide UPF0160 protein MYG1, mitochondrial 21 B4DJL6_HUMAN_00454;B4DVD5_HUMAN_00339;B4DVT3_HUMAN_00382;H3BRY6_HUMAN_003 4835 LQTDVQKILRNAR wildtype peptide UPF0464 protein C15orf44 68;CO044_HUMAN_00361 Isoform 2 of Mini-chromosome maintenance complex-binding 4836 LPACLNKEESKTF wildtype peptide protein E5RFP6_HUMAN_00091;E5RHZ6_HUMAN_00090;E5RJN6_HUMAN_00090;E5RK27_HUMAN_000 4837 EISWENKLAEGLK wildtype peptide Voltage-dependent anion-selective channel protein 3 58;F5H740_HUMAN_00091;VDAC3_HUMAN_00091 4838 GNKPYSKKDYRSZ wildtype peptide Voltage-gated potassium channel subunit beta-2 B0AZR7_HUMAN_00295;KCAB2_HUMAN_00348;KCAB2_HUMAN_00410 4839 EKSPIIKPLIPKP wildtype peptide WD repeat and HMG-box DNA-binding protein 1 C9JW18_HUMAN_00839;F8W7P7_HUMAN_00480 4840 THKDYVKALAYAK wildtype peptide WD repeat-containing protein 48 C9JC24_HUMAN_00051;WDR48_HUMAN_00112;WDR48_HUMAN_00039 4841 SDDKTLKIWDVSS wildtype peptide WD repeat-containing protein 5 4842 LSLHDNKYIRYFP wildtype peptide WD repeat-containing protein 82 4843 RYIVISKVDEEER wildtype peptide Poly(A)-specific ribonuclease PARN B4DSB0_HUMAN_00068;PARN_HUMAN_00182;PARN_HUMAN_00197 B4DHM5_HUMAN_00047;B4E1H9_HUMAN_00132;B7Z7A9_HUMAN_00194;E7ERH5_HUMAN_00 4844 ZZKVADKIQLINN wildtype peptide Phosphoglycerate kinase 1 086 4845 HSQELLKIKTEPV wildtype peptide Zinc finger protein PLAGL2 4846 YKEQESKKGFDQE wildtype peptide DNA-directed RNA polymerase II subunit RPB2 C9J2Y9_HUMAN_00813;C9J4M6_HUMAN_00745 4847 LEDVPEKQKNLEE wildtype peptide mRNA cap guanine-N7 methyltransferase 4848 THPPDKKLSKNEI wildtype peptide T-cell acute lymphocytic leukemia protein 1 E7EVM2_HUMAN_00224;TAL1_HUMAN_00197;TAL1_HUMAN_00047 4849 QQSPKDKLNNKLK wildtype peptide Rho GTPase-activating protein 11A 4850 LCGKKQKEITKAI wildtype peptide 28S ribosomal protein S18c, mitochondrial D6RCM2_HUMAN_00077;H0YAG5_HUMAN_00076 4851 LLLHLKKLEKEGK wildtype peptide Beta-lactamase-like protein 2 4852 TATISAKPQITNP wildtype peptide WW domain-binding protein 11

4853 LCAEDVKDFLEHM wildtype peptide DNA-directed RNA polymerase III subunit RPC5 B4DL24_HUMAN_00347;H3BT11_HUMAN_00383;RPC5_HUMAN_00383;RPC5_HUMAN_00383 4854 DLKFRQKVNLESN wildtype peptide Centlein C9J1F9_HUMAN_01158;CNTLN_HUMAN_01158 4855 ELQCFCKYLQRWR wildtype peptide 80 kDa MCM3-associated protein 4856 SLINVRKRNVESG wildtype peptide Serine/threonine-protein phosphatase PGAM5, mitochondrial 4857 KKSLLSKVSQGKR wildtype peptide DNA repair protein complementing XP-C cells E7EUB5_HUMAN_00044;E9PB96_HUMAN_00050;E9PH69_HUMAN_00050 4858 HTMKEAKDMKNKL wildtype peptide Regulator of G-protein signaling 3 4859 TKTEKGKPSREIK wildtype peptide T-cell activation Rho GTPase-activating protein F5GWV5_HUMAN_00164;TAGAP_HUMAN_00321;TAGAP_HUMAN_00290 4860 SLDEIEKLTYIDK wildtype peptide Carbamoyl-phosphate synthase [ammonia], mitochondrial H0YGP4_HUMAN_00877;CPSM_HUMAN_00418 4861 VKSKAKKTVDKHS wildtype peptide CCAAT/enhancer-binding protein beta D6RAD3_HUMAN_00073;E2QRM6_HUMAN_00073;H0Y9D8_HUMAN_00070;IPYR2_HUMAN_000 4862 PLKVNSKEENGIP wildtype peptide Inorganic pyrophosphatase 2, mitochondrial 73 4863 MPMREEKNFLLLS wildtype peptide Bile salt sulfotransferase E7EU50_HUMAN_00051;H3BLV5_HUMAN_00124;DCX_HUMAN_00051;DCX_HUMAN_00051;DCX 4864 ALSNEKKAKKVRF wildtype peptide Neuronal migration protein doublecortin _HUMAN_00051;DCX_HUMAN_00051 Acetylome - Acetyltransferase Microarray page 136 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B4DF14_HUMAN_00038;Q4JCQ8_HUMAN_00038;E7EPV5_HUMAN_00038;E7EUS7_HUMAN_00 4865 KVQNITKEDVKSY wildtype peptide Excitatory amino acid transporter 1 038;E7EUV6_HUMAN_00038 4866 TWKSLSKQELNQM wildtype peptide EF-hand domain-containing family member A2 H0YAN7_HUMAN_00046;H0YB82_HUMAN_00028 4867 GKLEEVKTPKNPV wildtype peptide Cell division cycle-associated protein 2 4868 QPRYPRKSTPRRN wildtype peptide cDNA FLJ75396 4869 FRLELDKYIQGLK wildtype peptide Protein Njmu-R1 4870 GKDLWSKRGSRKS wildtype peptide Alpha-protein kinase 2 4871 FYFSIIKDRLYCE wildtype peptide Isoleucine--tRNA ligase, mitochondrial A7Y322_HUMAN_00472;A8CTX8_HUMAN_00472;A8CTY3_HUMAN_00472;A8DCP3_HUMAN_004 72;B4DTM2_HUMAN_00472;E7ERJ0_HUMAN_00435;E7ERJ1_HUMAN_00472;E9PD98_HUMAN_ 00472;F5H153_HUMAN_00472;F8W7L8_HUMAN_00472;F8W7U0_HUMAN_00472;ITSN1_HUMAN 4872 EDIVVLKAKKKTL wildtype peptide Intersectin-1 _00472;ITSN1_HUMAN_00472;ITSN1_HUMAN_00472 4873 GLAQYLKQYKEAI wildtype peptide Transcription elongation factor A protein-like 2 4874 LSTQVIKSASSKS wildtype peptide Tudor domain-containing protein 6 4875 CQPWRWKSGAAAA wildtype peptide Ferrochelatase, mitochondrial 4876 FKEQLSKKGNYRY wildtype peptide Axin-2 4877 FSLFKSKKPRHRS wildtype peptide Neuroblast differentiation-associated protein AHNAK 4878 KKIEVIKPGDLGV wildtype peptide Electron transfer flavoprotein subunit beta 4879 VRTLLEKGVWPNT wildtype peptide Ankyrin repeat and SOCS box protein 15 4880 EKKDGDKKKKKKI wildtype peptide Heat shock protein HSP 90-alpha Q86U12_HUMAN_00095;HS90A_HUMAN_00396 4881 ILRRLKKYDNCWL wildtype peptide Phosphoenolpyruvate carboxykinase, cytosolic [GTP] 4882 KDGKEVKDVKEFK wildtype peptide Androglobin 4883 RMREKTKLLKEKN wildtype peptide Coiled-coil domain-containing protein 11 F6R503_HUMAN_00099;F8WA47_HUMAN_00195;G3XA90_HUMAN_00195;H0Y3A3_HUMAN_001 4884 LWVIEAKDLPAKK wildtype peptide Disabled homolog 2-interacting protein 32;DAB2P_HUMAN_00099;DAB2P_HUMAN_00030;DAB2P_HUMAN_00099 4885 KMLNKPKDKVSLI wildtype peptide Syntaxin-binding protein 3 4886 RASDSHKCDKRYR wildtype peptide Toll/interleukin-1 receptor domain-containing adapter protein B9ZVR8_HUMAN_03187;C9JGA8_HUMAN_03339;C9JV64_HUMAN_03104;H7C150_HUMAN_002 4887 LQEQEAKERKTKD wildtype peptide Ubiquitin carboxyl-terminal hydrolase 34 17;H7C183_HUMAN_01016;UBP34_HUMAN_03188;UBP34_HUMAN_03105 4888 QVKNVMKTFREEL wildtype peptide Coiled-coil domain-containing protein 164 4889 SVTSPRKPRTPRS wildtype peptide DNA polymerase zeta catalytic subunit B7ZM78_HUMAN_01224;D6W5D1_HUMAN_01170;H0Y470_HUMAN_00270;H0Y7U8_HUMAN_00 206;H7C2C6_HUMAN_00400;GRDN_HUMAN_01225;GRDN_HUMAN_01224;GRDN_HUMAN_0122 4890 LKVEQEKMLLENK wildtype peptide Girdin 4 4891 KMLMKWKEMADRY wildtype peptide CTP synthase 1 4892 CDYKVVKDMEYYL wildtype peptide Histone-lysine N-methyltransferase SUV39H2 4893 LLRQFQKEIEELK wildtype peptide Kinesin-like protein KIF3A Q05CT3_HUMAN_00335;E9PES4_HUMAN_00365;F5H1C2_HUMAN_00365 4894 KGEEGEKAATAEG wildtype peptide Collagen alpha-1(XXVI) chain C9JPW4_HUMAN_00355;EMID2_HUMAN_00353 4895 QNKGGIKRSASAA wildtype peptide Protein phosphatase 1 regulatory subunit 26 Q59EM5_HUMAN_00234;G5E980_HUMAN_00218;ARRB2_HUMAN_00218;ARRB2_HUMAN_0023 4896 KTVKKIKVSVRQY wildtype peptide Beta-arrestin-2 3 4897 KVEWAKKAYGLQS wildtype peptide Nebulin-related-anchoring protein NRAP_HUMAN_00924;NRAP_HUMAN_00889;NRAP_HUMAN_00881 4898 LVHWNPKYNTFKE wildtype peptide Carbonic anhydrase 3 4899 QESGIVKDASIIH wildtype peptide DENN domain-containing protein 3 E9PF32_HUMAN_00744;H0YAY3_HUMAN_00669;DEND3_HUMAN_00612 4900 PVNDYSKYINKEI wildtype peptide Lysosomal-trafficking regulator 4901 YKFRFHKPEEANE wildtype peptide Histone-lysine N-methyltransferase MLL E9PQG7_HUMAN_03752;MLL1_HUMAN_03711 B7Z278_HUMAN_00425;B7Z283_HUMAN_00492;B7Z3T6_HUMAN_00474;E7EVE5_HUMAN_0064 4902 APQKKHKVLLQQF wildtype peptide Rap guanine nucleotide exchange factor 4 4;E9PB94_HUMAN_00645;RPGF4_HUMAN_00330;RPGF4_HUMAN_00501 4903 SPKKESKKKTLKN wildtype peptide HIV Tat-specific factor 1 Acetylome - Acetyltransferase Microarray page 137 of 167

Sequence PEP_FLAG Protein name Uniprot IDs

Q5JYJ5_HUMAN_00296;Q5JYJ7_HUMAN_00838;E9PH77_HUMAN_00769;F5H091_HUMAN_0065 4904 NLNELGKMIMQGG wildtype peptide Proto-oncogene DBL 4;H0Y662_HUMAN_00197;MCF2_HUMAN_00693;MCF2_HUMAN_00753;MCF2_HUMAN_00709 4905 PPASTCKVLVESK wildtype peptide SAC3 domain-containing protein 1 4906 TGVPGKKCGTILL wildtype peptide Copine-9 B5MD75_HUMAN_00175;E7ERW1_HUMAN_00175;F8W7A7_HUMAN_00175;CR034_HUMAN_001 4907 EAIRLIKSLETDR wildtype peptide Uncharacterized protein C18orf34 75;CR034_HUMAN_00175 E7EPQ4_HUMAN_00370;E7EVU6_HUMAN_00352;F5H411_HUMAN_00351;ZBT17_HUMAN_0043 4908 FSDPTSKMRHLET wildtype peptide Zinc finger and BTB domain-containing protein 17 3 4909 YAWPFYKPVDVEA wildtype peptide Bromodomain-containing protein 4 Q4G0X8_HUMAN_00378;E7ESP5_HUMAN_00378;BRD4_HUMAN_00378 4910 ZZZZZMKIKDAKK wildtype peptide Pantothenate kinase 3 4911 GRKMSKKKTAVKR wildtype peptide Synaptotagmin-12 Q6P0N6_HUMAN_00350;E7ERU0_HUMAN_00676;E7ERU2_HUMAN_00676;E7ETB9_HUMAN_00 716;E9PEB9_HUMAN_00854;E9PHM6_HUMAN_00676;F6QMI7_HUMAN_00676;F8W9J4_HUMAN _00676;DYST_HUMAN_00792;DYST_HUMAN_00350;DYST_HUMAN_00350;DYST_HUMAN_0035 4912 KLTYAEKLHRLES wildtype peptide Dystonin 0 4913 CAFNKGKLKVLAT wildtype peptide Heat shock 70 kDa protein 4L D6RJ96_HUMAN_00178;E7ES43_HUMAN_00250;E9PDE8_HUMAN_00193 Q5VYG5_HUMAN_00808;F5H7D1_HUMAN_00808;F8W9E6_HUMAN_01145;F8WAD9_HUMAN_0 4914 SKEDLKKLHDFEE wildtype peptide Transient receptor potential cation channel subfamily M member 6 1145;TRPM6_HUMAN_01140;TRPM6_HUMAN_01140;TRPM6_HUMAN_01145 4915 RKARGKKRVPZZZ wildtype peptide Cyclic AMP-dependent transcription factor ATF-4 4916 YTKKKKKGKKGKK wildtype peptide Transcriptional regulator ATRX ATRX_HUMAN_01729;ATRX_HUMAN_01816;ATRX_HUMAN_01895;ATRX_HUMAN_01778 E9PJG7_HUMAN_00126;H0YDX0_HUMAN_00056;H0YF38_HUMAN_00040;E9PE65_HUMAN_000 26;F8W807_HUMAN_00026;BACE1_HUMAN_00126;BACE1_HUMAN_00126;BACE1_HUMAN_001 4917 TYRDLRKGVYVPY wildtype peptide Beta-secretase 1 26 H0YF38_HUMAN_00169;E9PE65_HUMAN_00174;F8W807_HUMAN_00199;H7BXJ9_HUMAN_000 4918 TNLRLPKKVFEAA wildtype peptide Beta-secretase 1 65;BACE1_HUMAN_00274;BACE1_HUMAN_00255;BACE1_HUMAN_00230 DX39B_HUMAN_00334;B4DP52_HUMAN_00256;Q5STU3_HUMAN_00334;F8VQ10_HUMAN_0034 9;F8W0J0_HUMAN_00089;H0Y400_HUMAN_00098;H0Y7G4_HUMAN_00234;H0Y7X6_HUMAN_00 4919 SRYQQFKDFQRRI wildtype peptide ATP-dependent RNA helicase DDX39A 234;DX39B_HUMAN_00349 4920 LNYKDKKLNIGPA wildtype peptide Protein boule-like F2Z2G3_HUMAN_00102;BOLL_HUMAN_00108;BOLL_HUMAN_00114;BOLL_HUMAN_00108 4921 AAPRLLKREPDWG wildtype peptide CCAAT/enhancer-binding protein delta 4922 MGLRTAKKRGLGG wildtype peptide Choline O-acetyltransferase 4923 KAMKSIKVKEEIK wildtype peptide Chromodomain-helicase-DNA-binding protein 1 F5GWX5_HUMAN_00109;F5H2G1_HUMAN_00090;F5H596_HUMAN_00109;F5H6N4_HUMAN_001 4924 YTPGKKKKKKLGP wildtype peptide Chromodomain-helicase-DNA-binding protein 4 16;CHD4_HUMAN_00116 F5GWX5_HUMAN_00297;F5H2G1_HUMAN_00278;F5H6N4_HUMAN_00304;CHD4_HUMAN_0030 4925 LGGFGSKRKRSSS wildtype peptide Chromodomain-helicase-DNA-binding protein 4 4 4926 KKLKDKKEKKAKR wildtype peptide Chromodomain-helicase-DNA-binding protein 5 4927 TTHLIAKEEMIHN wildtype peptide 26S proteasome non-ATPase regulatory subunit 12 4928 IRSYLEKVATGKL wildtype peptide 26S proteasome non-ATPase regulatory subunit 7 4929 TYEDIDKRGKYDL wildtype peptide 28S ribosomal protein S22, mitochondrial G5E9V5_HUMAN_00254;G5E9W7_HUMAN_00214;H7C5L9_HUMAN_00084 4930 LQSSYNKQRFDQP wildtype peptide 28S ribosomal protein S29, mitochondrial E7EM60_HUMAN_00141;RT29_HUMAN_00134 4931 AEAIVYKHGSGRI wildtype peptide 28S ribosomal protein S9, mitochondrial 4932 KLLELEKHIRVTI wildtype peptide 3-keto-steroid reductase DHB7_HUMAN_00313;DHB7_HUMAN_00286 4933 VRLDSQKHIDFSL wildtype peptide 40S ribosomal protein S9 B4DDT7_HUMAN_00232;F8VYY9_HUMAN_00213;F8VZX1_HUMAN_00158;F8W9D1_HUMAN_001 4934 LDVSVTKALQHRS wildtype peptide 5-AMP-activated protein kinase subunit gamma-1 80;H0YHF8_HUMAN_00029;H0YIC9_HUMAN_00184 4935 EPVHLYKDVKDSI wildtype peptide 5-nucleotidase domain-containing protein 3 4936 KEQWWLKLRPLMK wildtype peptide 6-phosphofructokinase type C B1APP8_HUMAN_00171;Q5VSR7_HUMAN_00745;H0Y3P8_HUMAN_00742 4937 EAWPHIKTIFQGI wildtype peptide 6-phosphogluconate dehydrogenase, decarboxylating B4DQJ8_HUMAN_00141;F5H0L3_HUMAN_00100;F5H7U0_HUMAN_00132 Acetylome - Acetyltransferase Microarray page 138 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B7Z712_HUMAN_00031;C9JCQ4_HUMAN_00031;C9JL19_HUMAN_00031;C9JL25_HUMAN_0007 3;E7ESH4_HUMAN_00031;E7EXB4_HUMAN_00031;C9J0S9_HUMAN_00031;F8WBB1_HUMAN_0 4938 AYAKDVKFGADAR wildtype peptide 60 kDa heat shock protein, mitochondrial 0031 4939 GTSSFGKRRNKTH wildtype peptide 60S ribosomal protein L37 D6R9X9_HUMAN_00010;D6RG19_HUMAN_00010 B4DP82_HUMAN_00014;E7EWF1_HUMAN_00014;H3BTP7_HUMAN_00014;H3BU31_HUMAN_00 4940 ISVYSEKGESSGK wildtype peptide 60S ribosomal protein L4 014 4941 QKYNCDKMICRKC wildtype peptide Ubiquitin-60S ribosomal protein L40 4942 SNVKIPKHLTDAY wildtype peptide 60S ribosomal protein L6 4943 FAELKIKRLRKKF wildtype peptide 60S ribosomal protein L7 4944 TATQLLKLAHKYR wildtype peptide 60S ribosomal protein L7a Q9BR14_HUMAN_00050;A6NDT2_HUMAN_00052;E9PIS4_HUMAN_00052;E9PJN0_HUMAN_000 4945 HYWVPAKRLFGGQ wildtype peptide Acyl-coenzyme A thioesterase 8 52;E9PMC4_HUMAN_00052;G5E995_HUMAN_00052;H0Y698_HUMAN_00013

4946 SSTSLLKMAPSAE wildtype peptide Acyl-coenzyme A thioesterase 9, mitochondrial H7C5Q2_HUMAN_00176;ACOT9_HUMAN_00217;ACOT9_HUMAN_00190;ACOT9_HUMAN_00259 4947 NVIGMDKPLTLPD wildtype peptide Adenosine deaminase F5GWI4_HUMAN_00054;F5GXW0_HUMAN_00054;F5GYD4_HUMAN_00054 4948 AEAHLGKLNVKLT wildtype peptide Adenosylhomocysteinase 4949 SSAMPYKRNPMRS wildtype peptide Adenylosuccinate lyase B4DUM2_HUMAN_00115;E7ERF4_HUMAN_00309;PUR8_HUMAN_00295 B7Z8H8_HUMAN_00118;E5RHC5_HUMAN_00231;E5RHT6_HUMAN_00186;E7EV62_HUMAN_001 78;F8VWH9_HUMAN_00157;F8W1U7_HUMAN_00157;ARFG1_HUMAN_00231;ARFG1_HUMAN_0 4950 AKEGATKFGSQAS wildtype peptide ADP-ribosylation factor GTPase-activating protein 1 0231 4951 KTRYMGKGVSKAV wildtype peptide Alpha-enolase 4952 KAGAVEKGVPLYR wildtype peptide Alpha-enolase 4953 LKTAIGKAGYTDK wildtype peptide Alpha-enolase 4954 RSERLAKYNQLLR wildtype peptide Alpha-enolase 4955 PNILENKEGLELL wildtype peptide Alpha-enolase SNAB_HUMAN_00203;B4DGP9_HUMAN_00160;B4DK44_HUMAN_00164;Q4G0M0_HUMAN_0010 4956 LLKYSAKDYFFKA wildtype peptide Alpha-soluble NSF attachment protein 9

4957 IARKIIKDGEQHE wildtype peptide Apoptosis-inducing factor 1, mitochondrial Q2QKE4_HUMAN_00241;E9PMA0_HUMAN_00254;AIFM1_HUMAN_00306;AIFM1_HUMAN_00589 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing 4958 MEGHLFKRASNAF wildtype peptide protein 1 4959 SSPNIAKEMHVGH wildtype peptide Arginine--tRNA ligase, cytoplasmic H7BXW2_HUMAN_00494;BMAL1_HUMAN_00495;BMAL1_HUMAN_00420;BMAL1_HUMAN_00536 4960 ASSPGGKKILNGG wildtype peptide Aryl hydrocarbon receptor nuclear translocator-like protein 1 ;BMAL1_HUMAN_00537;BMAL1_HUMAN_00494 4961 EAQIAAKNLDKEY wildtype peptide Aspartate aminotransferase, mitochondrial 4962 YRYYDPKTCGFDF wildtype peptide Aspartate aminotransferase, mitochondrial 4963 PTGPLDKYKIQAI wildtype peptide ATP synthase subunit s, mitochondrial Q8WXQ4_HUMAN_00071;ATP5S_HUMAN_00099;ATP5S_HUMAN_00099 4964 FKFEDPKFEVIEK wildtype peptide ATP synthase-coupling factor 6, mitochondrial B4DGL8_HUMAN_00225;G3V1J3_HUMAN_00225;G3XAC4_HUMAN_00211;ABCB7_HUMAN_002 4965 QTGALSKAIDRGT wildtype peptide ATP-binding cassette sub-family B member 7, mitochondrial 52 4966 GSILDRKDETKTQ wildtype peptide ATP-binding cassette sub-family E member 1 D6R9I9_HUMAN_00191;D6RGF4_HUMAN_00191;H0Y990_HUMAN_00124 4967 MHNKKLKYYTGNY wildtype peptide ATP-binding cassette sub-family F member 2 4968 AAKMFSKAFDSGI wildtype peptide ATP-citrate synthase B4E3P0_HUMAN_00677;E7ENH9_HUMAN_01002;ACLY_HUMAN_00938 B7WNZ6_HUMAN_00392;E7EPN9_HUMAN_00394;E9PF21_HUMAN_00392;H0Y877_HUMAN_001 50;PRC2C_HUMAN_00149;PRC2C_HUMAN_00392;PRC2C_HUMAN_00392;PRC2C_HUMAN_003 4969 AKVPYGKGPSFNQ wildtype peptide Protein PRRC2C 92;PRC2C_HUMAN_00392;PRC2C_HUMAN_00394 E9PK09_HUMAN_00437;E9PK91_HUMAN_00437;E9PKI6_HUMAN_00437;E9PQN2_HUMAN_004 4970 TEEEGLKYKSKVS wildtype peptide Bcl-2-associated transcription factor 1 35;BCLF1_HUMAN_00435;BCLF1_HUMAN_00435 4971 PSEVAHKSIEAVV wildtype peptide BEN domain-containing protein 5 4972 KMTIFEKENFIGR wildtype peptide Beta-crystallin A3 Acetylome - Acetyltransferase Microarray page 139 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 4973 DTTYCIKKLPRNP wildtype peptide Beta-lactamase-like protein 2 4974 IWAFNKKVIDPVA wildtype peptide Bifunctional glutamate/proline--tRNA ligase 4975 AIEAQKKKMEALS wildtype peptide Calmodulin-regulated spectrin-associated protein 1 CAMP1_HUMAN_00619;CAMP1_HUMAN_00908 E9PJA6_HUMAN_00084;E9PJJ3_HUMAN_00084;E9PLC9_HUMAN_00084;E9PLQ6_HUMAN_0008 4;E9PLX0_HUMAN_00084;E9PMC6_HUMAN_00084;E9PQB3_HUMAN_00084;E9PRM1_HUMAN_ 4976 SKTYGIKWKRPTE wildtype peptide Calpain-1 catalytic subunit 00084;E9PSA6_HUMAN_00084 B4DDF4_HUMAN_00008;B4DUT8_HUMAN_00008;E7ENR3_HUMAN_00008;CNN2_HUMAN_0000 4977 SSTQFNKGPSYGL wildtype peptide Calponin-2 8 4978 LPPKKIKDPDASK wildtype peptide Calreticulin 4979 EKAEEAKLKARYP wildtype peptide cAMP-regulated phosphoprotein 19 H3BMD8_HUMAN_00050;H3BTD3_HUMAN_00015;ARP19_HUMAN_00015 4980 ILESDRKEPLFGI wildtype peptide Carbamoyl-phosphate synthase [ammonia], mitochondrial Q5R211_HUMAN_00287;H0YGP4_HUMAN_00295 4981 GQVVAMKKKKIRL wildtype peptide Putative uncharacterized protein DKFZp686L20222 4982 NNLIVDKATKKAV wildtype peptide Cyclin-dependent kinase 13

4983 ZMENFQKVEKIGE wildtype peptide Cyclin-dependent kinase 2 E7ESI2_HUMAN_00007;G3V317_HUMAN_00007;G3V5T9_HUMAN_00007;CDK2_HUMAN_00007 B4DP17_HUMAN_00086;E9PDR7_HUMAN_00105;CNBP_HUMAN_00096;CNBP_HUMAN_00093; 4984 CCYNCGKPGHLAR wildtype peptide Cellular nucleic acid-binding protein CNBP_HUMAN_00104;CNBP_HUMAN_00098 4985 QSTSRHKKLMFKT wildtype peptide Cellular tumor antigen p53 P53_HUMAN_00342;P53_HUMAN_00249 4986 RAAALAKIKZZZZ wildtype peptide Centromere/kinetochore protein zw10 homolog 4987 DDLTLLKQLRKEQ wildtype peptide Coiled-coil domain-containing protein 58 C9JQ41_HUMAN_00086;H7C525_HUMAN_00097 E9PGZ0_HUMAN_00127;E9PLD4_HUMAN_00081;G5E9Q2_HUMAN_00127;CSDE1_HUMAN_000 4988 SDRRTGKPIAVKL wildtype peptide Cold shock domain-containing protein E1 81 4989 IEIHYAKTAKKMD wildtype peptide Condensin complex subunit 2 B4E189_HUMAN_00501;E9PHA2_HUMAN_00626;H7C415_HUMAN_00078 4990 RNQIHVKSPPREG wildtype peptide COP9 signalosome complex subunit 1 CSN1_HUMAN_00463;CSN1_HUMAN_00503 4991 LLATLKKTGKTVS wildtype peptide Copper transport protein ATOX1 E5RGN3_HUMAN_00048;E5RIM7_HUMAN_00062 4992 TVQELQKRLDRLE wildtype peptide Coronin-1A 4993 ALTTLFKYIDENQ wildtype peptide Cytosolic non-specific dipeptidase 4994 PKEGWQKGPRSDN wildtype peptide DAZ-associated protein 1 4995 KNLEPGKQISRSS wildtype peptide Death domain-associated protein 6 F5H082_HUMAN_00437;DAXX_HUMAN_00512 4996 QIVRVGKMDLKDT wildtype peptide Dedicator of cytokinesis protein 2 F8W9H6_HUMAN_00692;H0Y7L2_HUMAN_01125;DOCK7_HUMAN_01951;DOCK7_HUMAN_0192 4997 ELHEQFKRKTILT wildtype peptide Dedicator of cytokinesis protein 7 2;DOCK7_HUMAN_01920;DOCK7_HUMAN_01931;DOCK7_HUMAN_01953 4998 KRNAMNKVFWREM wildtype peptide Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial 4999 IEVVKKKNKAGVS wildtype peptide DNA topoisomerase 2-beta E9PCY5_HUMAN_00360;TOP2B_HUMAN_00360 5000 IKENAGKIMSLLS wildtype peptide DNA topoisomerase 2-binding protein 1 C9IZC5_HUMAN_00136;C9JGL9_HUMAN_00136;C9JP21_HUMAN_00136;H0YL78_HUMAN_0003 5001 GLIQVGKWNPVPL wildtype peptide DNA-binding protein SATB1 2;H0YNA6_HUMAN_00032;SATB1_HUMAN_00136 5002 FNKVVLKHLKKTK wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_00832;PRKDC_HUMAN_00832 5003 YRLIFEKFSGKDP wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_02258;PRKDC_HUMAN_02259 5004 AALGDPKAPGLGA wildtype peptide DNA-dependent protein kinase catalytic subunit E7EUY0_HUMAN_03620;PRKDC_HUMAN_03621 EF1A2_HUMAN_00055;Q5JR01_HUMAN_00055;Q6IQ15_HUMAN_00055;F8W6I0_HUMAN_00055 5005 MGKGSFKYAWVLD wildtype peptide Elongation factor 1-alpha 1 A6PW80_HUMAN_00055;E7EPH7_HUMAN_00055;EF1A3_HUMAN_00055

5006 PLQDVYKIGGIGT wildtype peptide Elongation factor 1-alpha 1 EF1A2_HUMAN_00255;Q6IQ15_HUMAN_00234;F8W6I0_HUMAN_00255;EF1A3_HUMAN_00255 5007 DRRSGKKLEDGPK wildtype peptide Elongation factor 1-alpha 1 Q6IQ15_HUMAN_00365;F8W6I0_HUMAN_00384;EF1A3_HUMAN_00386 5008 VSTYIKKIGYNPD wildtype peptide Elongation factor 1-alpha 1 Q6IQ15_HUMAN_00159;F8W6I0_HUMAN_00180;EF1A3_HUMAN_00180 5009 RWYNHIKSYEKEK wildtype peptide Elongation factor 1-beta C9JZW3_HUMAN_00060;F2Z2G2_HUMAN_00060 Acetylome - Acetyltransferase Microarray page 140 of 167

Sequence PEP_FLAG Protein name Uniprot IDs Q4VBZ6_HUMAN_00093;E9PBQ9_HUMAN_00098;E9PK01_HUMAN_00117;E9PQZ1_HUMAN_00 074;E9PRY8_HUMAN_00533;F8W934_HUMAN_00411;E9PI39_HUMAN_00117;E9PK06_HUMAN_ 00098;E9PL12_HUMAN_00117;E9PL71_HUMAN_00093;E9PMW7_HUMAN_00117;E9PN91_HUM AN_00093;E9PPR1_HUMAN_00117;E9PQ49_HUMAN_00117;H0YCK7_HUMAN_00197;EF1D_HU 5010 RLNVLEKSSPGHR wildtype peptide Elongation factor 1-delta MAN_00483 B4E1E4_HUMAN_00089;B8ZZ50_HUMAN_00134;B8ZZJ9_HUMAN_00134;B8ZZL3_HUMAN_0008 5011 ANKNGGKWIIRLR wildtype peptide Eukaryotic translation initiation factor 4E type 2 9;B9A023_HUMAN_00089;B9A044_HUMAN_00134;C9JEL3_HUMAN_00129 IF5AL_HUMAN_00027;IF5A2_HUMAN_00027;C9J4W5_HUMAN_00008;C9J7B5_HUMAN_00027;F 5012 QCSALRKNGFVVL wildtype peptide Eukaryotic translation initiation factor 5A-1 8WCJ1_HUMAN_00027;IF5A1_HUMAN_00057 5013 RVAFVEKLTKLVL wildtype peptide Exocyst complex component 2 5014 RSLKYGKLGQGVL wildtype peptide Exosome complex component RRP4

5015 QRITAFKMEKAPI wildtype peptide Exosome complex component RRP45 D6RIY6_HUMAN_00281;EXOS9_HUMAN_00297;EXOS9_HUMAN_00213;EXOS9_HUMAN_00213 5016 QLGSILKTNVRAC wildtype peptide Exportin-1 5017 TGVELGKPTHFTV wildtype peptide Filamin-A A6NDY9_HUMAN_00864;Q5HY54_HUMAN_00891;FLNA_HUMAN_00891

5018 SVSYLLKDKGEYT wildtype peptide Filamin-A A6NDY9_HUMAN_02289;Q5HY54_HUMAN_02581;E9PHF0_HUMAN_00754;FLNA_HUMAN_02613 FLNC_HUMAN_02591;A6NDY9_HUMAN_02183;Q5HY54_HUMAN_02475;E9PHF0_HUMAN_0064 5019 GSPFKAKVTGPRL wildtype peptide Filamin-A 8;FLNA_HUMAN_02507;FLNC_HUMAN_02558 E7EN95_HUMAN_02383;FLNB_HUMAN_02552;FLNB_HUMAN_02535;FLNB_HUMAN_02511;FLN 5020 NVTYVVKERGDYV wildtype peptide Filamin-B B_HUMAN_02396;FLNB_HUMAN_02607;FLNB_HUMAN_02565 5021 PEWAYGKKGQPDA wildtype peptide Peptidyl-prolyl cis-trans isomerase FKBP3 5022 IHAELSKLVKKHA wildtype peptide Peptidyl-prolyl cis-trans isomerase FKBP8 C8C9T5_HUMAN_00189;FKBP8_HUMAN_00349 5023 RGIIKSKGYILQA wildtype peptide Glutamate--cysteine ligase regulatory subunit 5024 IERTDFKEEPEPG wildtype peptide Glutamine--tRNA ligase B4DNN3_HUMAN_00570;B4DWJ2_HUMAN_00609;H7C0R3_HUMAN_00140

5025 YMANDLKLLRHHL wildtype peptide Glutathione S-transferase kappa 1 C9JNT3_HUMAN_00061;E9PFN5_HUMAN_00071;GSTK1_HUMAN_00071;GSTK1_HUMAN_00071 5026 ILELFSKVPSLVG wildtype peptide Glutathione S-transferase omega-1 Q5TA02_HUMAN_00094;D3DRA3_HUMAN_00094 5027 GKDDYVKALPGQL wildtype peptide Glutathione S-transferase P 5028 QERDPSKIKWGDA wildtype peptide Glyceraldehyde-3-phosphate dehydrogenase E7EU54_HUMAN_00084;E7EUT4_HUMAN_00042 B4DY72_HUMAN_00249;B4DYH1_HUMAN_00432;E7EUG1_HUMAN_00481;HS105_HUMAN_0043 5029 HAAPFSKVLTFLR wildtype peptide Heat shock protein 105 kDa 0;HS105_HUMAN_00389 5030 ATDILPKWLRFIR wildtype peptide Heat shock protein 75 kDa, mitochondrial 5031 FIDQSKKDAEKYA wildtype peptide Heat shock protein 75 kDa, mitochondrial 5032 FYEQFSKNIKLGI wildtype peptide Heat shock protein HSP 90-alpha Q86U12_HUMAN_00264;HS90A_HUMAN_00565 5033 LEKKVEKVVVSNR wildtype peptide Heat shock protein HSP 90-alpha

5034 KKKNNIKLYVRRV wildtype peptide Heat shock protein HSP 90-alpha HS90B_HUMAN_00354;Q86U12_HUMAN_00183;H90B3_HUMAN_00296;HS90A_HUMAN_00484 5035 DHDPVDKIVLQKY wildtype peptide Heterogeneous nuclear ribonucleoproteins A2/B1 HNRPC_HUMAN_00216;B2R603_HUMAN_00216;B4DY08_HUMAN_00203;G3V2D6_HUMAN_001 24;G3V2Q1_HUMAN_00216;G3V4C1_HUMAN_00203;G3V4W0_HUMAN_00203;G3V576_HUMAN _00216;G3V5V7_HUMAN_00100;G8JL89_HUMAN_00111;HNRPC_HUMAN_00203;HNRPC_HUMA 5036 LLENLEKIEKEQS wildtype peptide Heterogeneous nuclear ribonucleoprotein C-like 1 N_00136;HNRPC_HUMAN_00160 High mobility group nucleosome-binding domain-containing protein 5037 STLQSQKAEGTGD wildtype peptide 4 Q5T7C0_HUMAN_00030;Q5T7C4_HUMAN_00030;Q5T7C6_HUMAN_00030;E9PFF0_HUMAN_000 5038 REEHKKKHPDASV wildtype peptide High mobility group protein B1 30 Q5T7C0_HUMAN_00044;Q5T7C4_HUMAN_00044;Q5T7C6_HUMAN_00044;E9PFF0_HUMAN_000 5039 FSEFSKKCSERWK wildtype peptide High mobility group protein B1 44 5040 GKSEAGKKGPGRP wildtype peptide High mobility group protein B2 Acetylome - Acetyltransferase Microarray page 141 of 167

Sequence PEP_FLAG Protein name Uniprot IDs H2A1_HUMAN_00120;H2A1D_HUMAN_00120;H2A2A_HUMAN_00120;H2A3_HUMAN_00120;H2A 5041 AVLLPKKTESHHK wildtype peptide Histone H2A type 1-B/E 1C_HUMAN_00120;H2A1H_HUMAN_00120;H2A1J_HUMAN_00120 H2AV_HUMAN_00008;A6NFA8_HUMAN_00008;A8MQC5_HUMAN_00008;C9J0D1_HUMAN_0000 5042 AGGKAGKDSGKAK wildtype peptide Histone H2A.Z 8;C9J386_HUMAN_00008;H2AV_HUMAN_00008 5043 RGKTGGKARAKAK wildtype peptide Histone H2A.x 5044 MPEVSSKGATISK wildtype peptide Histone H2B type 1-A 5045 SKKGFKKAVVKTQ wildtype peptide Histone H2B type 1-A H2B1J_HUMAN_00012;H2B1O_HUMAN_00012;H2B1B_HUMAN_00012;H2BFS_HUMAN_00012;H 2B1D_HUMAN_00012;H2B1C_HUMAN_00012;H2B2E_HUMAN_00012;H2B2F_HUMAN_00012;H2 B3B_HUMAN_00012;H2B1H_HUMAN_00012;H2B1N_HUMAN_00012;H2B1L_HUMAN_00012;B4D 5046 KSAPAPKKGSKKA wildtype peptide Histone H2B type 1-K R52_HUMAN_00012;H2B2F_HUMAN_00012 5047 VLSPNSKVESKCE wildtype peptide Histone-lysine N-methyltransferase MLL3 H7BY37_HUMAN_00338;MLL3_HUMAN_01893;MLL3_HUMAN_02832 5048 DKHSPQKKSTVTN wildtype peptide Histone-lysine N-methyltransferase MLL3 H7BY37_HUMAN_00320;MLL3_HUMAN_01875;MLL3_HUMAN_02814 5049 TAIFESKGFRCPQ wildtype peptide Histone-lysine N-methyltransferase NSD3 B7ZL11_HUMAN_00790;C9JY66_HUMAN_00727;NSD3_HUMAN_00790;NSD3_HUMAN_00727 5050 GTGAPAKIITAVP wildtype peptide Host cell factor 1 A6NEM2_HUMAN_00813;HCFC1_HUMAN_00744 5051 RMEQFQKEKEELD wildtype peptide Hsp90 co-chaperone Cdc37 5052 MDPTDAKYHMQRC wildtype peptide Hsp90 co-chaperone Cdc37 B7Z9J8_HUMAN_00234;H0YL72_HUMAN_00308;H0YM46_HUMAN_00025;H0YNF5_HUMAN_000 5053 DGKSLTKDLGGNA wildtype peptide Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial 64;IDH3A_HUMAN_00265 5054 NMASEEKLEQVLS wildtype peptide Isocitrate dehydrogenase [NAD] subunit beta, mitochondria E9PGU4_HUMAN_00096;IDH3B_HUMAN_00096 5055 IIWQFIKEKLILP wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial 5056 REPIICKNIPRLV wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial B4DFL2_HUMAN_00103;B4DSZ6_HUMAN_00025 5057 AYDGRFKDIFQEI wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial B4DFL2_HUMAN_00211;B4DSZ6_HUMAN_00133;H0YL11_HUMAN_00154 5058 DFLDTIKSNLDRA wildtype peptide Isocitrate dehydrogenase [NADP], mitochondrial B4DFL2_HUMAN_00390;B4DSZ6_HUMAN_00312;H0YL11_HUMAN_00302 Q3BDU5_HUMAN_00114;Q5TCJ4_HUMAN_00114;Q6UYC3_HUMAN_00114;LMNA_HUMAN_0011 5059 KVREEFKELKARN wildtype peptide Prelamin-A/C 4;LMNA_HUMAN_00114 Q5TCI8_HUMAN_00369;Q6UYC3_HUMAN_00450;D6RAQ3_HUMAN_00351;E7EUI9_HUMAN_003 5060 EVDEEGKFVRLRN wildtype peptide Prelamin-A/C 38;LMNA_HUMAN_00450;LMNA_HUMAN_00450 5061 EYHCKKKYGVAWE wildtype peptide Lamin-B receptor 5062 DTSVSYKYTSRYV wildtype peptide Lamin-B1 5063 SLAAAKKQLADET wildtype peptide Lamin-B1 5064 AYKFTPKYILRAG wildtype peptide Lamin-B2 5065 DFVKTLKZZZZZZ wildtype peptide Malate dehydrogenase, mitochondrial E9PDB2_HUMAN_00296;G3XAL0_HUMAN_00231 5066 YYGVSDKNLRRRK wildtype peptide Malignant fibrous histiocytoma-amplified sequence 1 5067 VCDAAEKGVRTLT wildtype peptide Perilipin-3 5068 GLDSLNKKRLADS wildtype peptide Mastermind-like protein 1 Q68E03_HUMAN_00007;A8MXP9_HUMAN_00007;D6R8Z5_HUMAN_00007;D6R991_HUMAN_000 07;D6R9F3_HUMAN_00007;D6RB45_HUMAN_00007;D6RBS2_HUMAN_00007;D6RCM3_HUMAN 5069 ZZZZMSKSFQQSS wildtype peptide Matrin-3 _00007;D6REK4_HUMAN_00007;D6REM6_HUMAN_00007 B3KM87_HUMAN_00498;Q68E03_HUMAN_00272;A8MXP9_HUMAN_00884;MATR3_HUMAN_005 5070 LKKFLNKLAEERR wildtype peptide Matrin-3 48 5071 AQSEAEKLAKERQ wildtype peptide Moesin Q5JYA3_HUMAN_00064;Q5JYA4_HUMAN_00019;Q5JYA5_HUMAN_00018;H0Y327_HUMAN_001 5072 KVLNALKPEKDVD wildtype peptide Monofunctional C1-tetrahydrofolate synthase, mitochondrial 34;C1TM_HUMAN_00174 5073 KRLLGWKKSAGGS wildtype peptide Mothers against decapentaplegic homolog 2 5074 LRMSFVKGWGPDY wildtype peptide Mothers against decapentaplegic homolog 4 5075 CLLNSNKYFPSRV wildtype peptide MOB-like protein phocein B4DM50_HUMAN_00041;PHOCN_HUMAN_00108;PHOCN_HUMAN_00119 5076 GLQMVKKNFEWVA wildtype peptide Multifunctional protein ADE2 D6RF62_HUMAN_00155;E9PBS1_HUMAN_00247;PUR6_HUMAN_00254 5077 WPENHVKAVVVTD wildtype peptide NAD-dependent malic enzyme, mitochondrial 5078 KIWMFDKYGLLVK wildtype peptide NAD-dependent malic enzyme, mitochondrial Acetylome - Acetyltransferase Microarray page 142 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5079 NITKLLKAISPDK wildtype peptide NAD(P) transhydrogenase, mitochondrial B4DLR8_HUMAN_00137;H3BNV2_HUMAN_00188;H3BRK3_HUMAN_00171;NQO1_HUMAN_0017 5080 QILEGWKKRLENI wildtype peptide NAD(P)H dehydrogenase [quinone] 1 5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5081 NTEVGDKWIWLKZ wildtype peptide 10, mitochondrial C9JGP9_HUMAN_00350;E7ESZ7_HUMAN_00385

5082 NPEPWNKLGPNDQ wildtype peptide NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4 5083 NTESYLKRRQKTH wildtype peptide Nuclear cap-binding protein subunit 1 P121A_HUMAN_00740;A8MXF9_HUMAN_00475;P121B_HUMAN_00324;P121C_HUMAN_00475;P 5084 APPKSEKEGPTPP wildtype peptide Nuclear envelope pore membrane protein POM 121C 121A_HUMAN_00475;P121A_HUMAN_00475 Q9BTE9_HUMAN_00379;F5H4J1_HUMAN_00379;F5H6Y5_HUMAN_00379;NUMA1_HUMAN_0037 5085 KKCLEEKNEILQG wildtype peptide Nuclear mitotic apparatus protein 1 9 5086 GTGFGDKFKPVIG wildtype peptide Nuclear pore complex protein Nup153 Q4LE47_HUMAN_00698;F6QR24_HUMAN_00749 5087 LLDKILKKHKPDF wildtype peptide Nuclear pore complex protein Nup205 F2Z2D0_HUMAN_00044;F8WCW4_HUMAN_00044 5088 GLSSDNKPMVNLD wildtype peptide SAP domain-containing ribonucleoprotein F8VZQ9_HUMAN_00142;H0YHG0_HUMAN_00455 5089 LRSQNTKISTQLD wildtype peptide Nucleoprotein TPR Q32Q12_HUMAN_00081;E7ERL0_HUMAN_00081;E5RHP0_HUMAN_00056;NDKA_HUMAN_0008 5090 EHYVDLKDRPFFA wildtype peptide Nucleoside diphosphate kinase A 1;NDKB_HUMAN_00056 NDKB_HUMAN_00085;Q32Q12_HUMAN_00110;E7ERL0_HUMAN_00110;F6XY72_HUMAN_00010 5091 EGLNVVKTGRVML wildtype peptide Nucleoside diphosphate kinase A ;NDK8_HUMAN_00070;NDKA_HUMAN_00110;NDKB_HUMAN_00085 Q4TT34_HUMAN_00099;A2IDD0_HUMAN_00021;E9PDC0_HUMAN_00091;F2Z2X0_HUMAN_0009 5092 YQDLRRKPFYPAL wildtype peptide Nucleoside diphosphate kinase, mitochondrial 1;H0Y6J0_HUMAN_00087;A2IDC9_HUMAN_00021 B3KNT8_HUMAN_00194;B3KV44_HUMAN_00126;B7Z4K9_HUMAN_00011;B7Z9C2_HUMAN_001 52;F5H4R6_HUMAN_00194;F8VUC3_HUMAN_00011;F8VUX1_HUMAN_00167;F8VV59_HUMAN_0 0153;F8VXI6_HUMAN_00200;F8VY35_HUMAN_00194;F8W020_HUMAN_00201;F8W0J6_HUMAN _00205;F8W118_HUMAN_00153;F8W543_HUMAN_00131;H0YH88_HUMAN_00134;H0YHC3_HU 5093 HDEPILKHLKDIK wildtype peptide Nucleosome assembly protein 1-like 1 MAN_00155;H0YIV4_HUMAN_00188 5094 EIEVLNKHLFLTS wildtype peptide Obg-like ATPase 1 C9JCJ9_HUMAN_00058;OLA1_HUMAN_00058;OLA1_HUMAN_00216 E7EWE5_HUMAN_00541;E9PB82_HUMAN_00547;F5HE57_HUMAN_00590;E7EPL9_HUMAN_003 5095 IKARFAKPVYPGQ wildtype peptide Peroxisomal multifunctional enzyme type 2 03;E7ET17_HUMAN_00428;G5E9S2_HUMAN_00425 E7ER27_HUMAN_00139;E7EWE5_HUMAN_00115;E9PB82_HUMAN_00121;F5HE57_HUMAN_00 5096 AAWEHMKKQKYGR wildtype peptide Peroxisomal multifunctional enzyme type 2 164 5097 LRKAYGKSEWNTV wildtype peptide Pescadillo homolog B5MCF9_HUMAN_00098;C9JXJ1_HUMAN_00098;PESC_HUMAN_00098 5098 LPTKPTKISKFGF wildtype peptide PEST proteolytic signal-containing nuclear protein D3DN52_HUMAN_00088;PCNP_HUMAN_00067 5099 GQRWSAKYRYDKE wildtype peptide PHD finger protein 20-like protein 1 5100 TPENLAKLLTRMY wildtype peptide Phenylalanine--tRNA ligase beta subunit 5101 GEGVLTKLCRKKP wildtype peptide Pleckstrin homology domain-containing family F member 2 PLEC_HUMAN_03310;PLEC_HUMAN_03306;PLEC_HUMAN_03283;PLEC_HUMAN_03283;PLEC_ 5102 GKVTVEKVIKILI wildtype peptide Plectin HUMAN_03287;PLEC_HUMAN_03251;PLEC_HUMAN_03261;PLEC_HUMAN_03269 B7ZBY5_HUMAN_00792;E9PM80_HUMAN_00739;F5H8H4_HUMAN_00163;H0YCT3_HUMAN_002 5103 VPRKSPKYLALFK wildtype peptide Pogo transposable element with ZNF domain 01;POGZ_HUMAN_00748;POGZ_HUMAN_00757;POGZ_HUMAN_00706 5104 TVIGSNKLEQMPS wildtype peptide Poly [ADP-ribose] polymerase 1 5105 NATVYGKGVYFAR wildtype peptide Poly [ADP-ribose] polymerase 10 E9PK67_HUMAN_00907;E9PNI7_HUMAN_00928;F5H462_HUMAN_00622 5106 YQTLSWKYPKGIH wildtype peptide Poly(A)-specific ribonuclease PARN H3BRK1_HUMAN_00069;PARN_HUMAN_00159;PARN_HUMAN_00174 5107 SNPRPSKGKMMRC wildtype peptide Probable histone-lysine N-methyltransferase NSD2 A2A2T2_HUMAN_00127;NSD2_HUMAN_00127 D6RE87_HUMAN_00053;E7EPB1_HUMAN_00053;E7EQS8_HUMAN_00074;F5H3K4_HUMAN_000 5108 EVNGDTKWHSFKS wildtype peptide Methylcytosine dioxygenase TET2 53;TET2_HUMAN_00053;TET2_HUMAN_00053 5109 TVTKTDKTLVLLM wildtype peptide Profilin-1 5110 ARFVVEKAEQQKK wildtype peptide Prohibitin C9JW96_HUMAN_00202;E9PCW0_HUMAN_00202 5111 ADMGHLKYYLAPK wildtype peptide Proliferating cell nuclear antigen Acetylome - Acetyltransferase Microarray page 143 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5112 VTIKFMKVDGAKE wildtype peptide Prolyl endopeptidase

5113 NHTISGKTESSNA wildtype peptide Protein Jumonji B7Z7X9_HUMAN_00242;B7Z8L0_HUMAN_00206;F5H590_HUMAN_00340;JARD2_HUMAN_00340 5114 GAENFDKFFTRGQ wildtype peptide Protein kinase C alpha type B7ZM62_HUMAN_00408;Q2HXV1_HUMAN_00408;Q2HXV3_HUMAN_00408;E7ETU8_HUMAN_00 433;F5H0X3_HUMAN_00440;F8WAN7_HUMAN_00413;H7C0U2_HUMAN_00350;H7C4X9_HUMAN _00340;PKCB1_HUMAN_00433;PKCB1_HUMAN_00413;PKCB1_HUMAN_00433;PKCB1_HUMAN_ 00433;PKCB1_HUMAN_00408;PKCB1_HUMAN_00268;PKCB1_HUMAN_00037;PKCB1_HUMAN_0 0408;PKCB1_HUMAN_00268;PKCB1_HUMAN_00433;PKCB1_HUMAN_00433;PKCB1_HUMAN_00 5115 PKILMSKPVLSGG wildtype peptide Protein kinase C-binding protein 1 413 5116 VRKIVEKHFRDVE wildtype peptide Protein LSM12 homolog 5117 NKLKNNKEYLEFR wildtype peptide Protein NipSnap homolog 1 C9JDV8_HUMAN_00011;H7C2U6_HUMAN_00163 5118 LWGDAFKRAVHAH wildtype peptide Protein NipSnap homolog 3A 5119 LSCEQLKQLQRFD wildtype peptide Putative methyltransferase NSUN6 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 5120 EDYPSGKKRAGTD wildtype peptide DHX15 5121 KYMEANKNIGKIV wildtype peptide Quinone oxidoreductase PIG3 A8MYV2_HUMAN_00082;B8ZZ09_HUMAN_00049;B8ZZ10_HUMAN_00049;LUC7L_HUMAN_0013 5122 LNEEIGKLLAKAE wildtype peptide Putative RNA-binding protein Luc7-like 1 5;LUC7L_HUMAN_00118 5123 IIHTGEKPYRCSV wildtype peptide Zinc finger protein 16 5124 AARPPPKPMZZZZ wildtype peptide HCG1745083

Q7L7Q5_HUMAN_00111;Q7L7Q6_HUMAN_00285;Q8IUA4_HUMAN_00898;D6W5C2_HUMAN_001 46;F8W914_HUMAN_00257;F8WAM4_HUMAN_00872;H7C106_HUMAN_00128;RTN4_HUMAN_00 5125 HVNCTIKELRRLF wildtype peptide Reticulon-4 285;RTN4_HUMAN_00111;RTN4_HUMAN_00872;RTN4_HUMAN_00304;RTN4_HUMAN_00898 5126 DKEQYDKILDLIE wildtype peptide Retinal dehydrogenase 1 5127 SAGVFTKDIDKAI wildtype peptide Retinal dehydrogenase 1 5128 HLPGESKFQQKLA wildtype peptide Retinoblastoma-associated protein

5129 MSCVHYKFSSKLN wildtype peptide E3 ubiquitin-protein ligase RBBP6 H3BUN0_HUMAN_00007;RBBP6_HUMAN_00007;RBBP6_HUMAN_00007;RBBP6_HUMAN_00007 5130 SIRAFAKGFLAEE wildtype peptide Retinol dehydrogenase 11 B4DDW0_HUMAN_00112;H0YJ46_HUMAN_00011;RDH11_HUMAN_00099 SAFB1_HUMAN_00294;B7Z2F6_HUMAN_00137;A8MXT5_HUMAN_00293;C9JPX0_HUMAN_0018 5131 SLLAVVKREPAEQ wildtype peptide Scaffold attachment factor B2 9;F5GZU3_HUMAN_00124;F5H0H3_HUMAN_00225;F5H1L1_HUMAN_00189 5132 LSFDKIKEQRERE wildtype peptide Scaffold attachment factor B2 5133 VVAVAEKREKLAN wildtype peptide Selenoprotein H B4DNE4_HUMAN_00158;E7EPK1_HUMAN_00212;E7ES33_HUMAN_00212;G3V1Q4_HUMAN_00 160;H0Y3Y4_HUMAN_00191;H0YFF6_HUMAN_00199;F5GZE5_HUMAN_00212;SEPT7_HUMAN_0 5134 FKKQIMKEIQEHK wildtype peptide Septin-7 0212 5135 EKNDFTKFKTEQE wildtype peptide Serine beta-lactamase-like protein LACTB, mitochondrial H0YNN5_HUMAN_00105;LACTB_HUMAN_00264 5136 SWDKEGKYAMAWG wildtype peptide Serine beta-lactamase-like protein LACTB, mitochondrial FNBP2_HUMAN_00227;SRGP1_HUMAN_00217;F5H5V9_HUMAN_00097;G5EA48_HUMAN_00177 ;H0Y2P8_HUMAN_00141;H0Y4C3_HUMAN_00087;SRGP3_HUMAN_00217;SRGP3_HUMAN_0021 5137 RRSSVKKIEKMKE wildtype peptide SLIT-ROBO Rho GTPase-activating protein 3 7;SRGP1_HUMAN_00217 SRGP1_HUMAN_00224;F5H5V9_HUMAN_00104;G5EA48_HUMAN_00184;SRGP3_HUMAN_0022 5138 IEKMKEKRQAKYS wildtype peptide SLIT-ROBO Rho GTPase-activating protein 3 4;SRGP3_HUMAN_00224;SRGP1_HUMAN_00224 5139 AQSLIDKTTAAFQ wildtype peptide U1 small nuclear ribonucleoprotein C SUMO2_HUMAN_00045;B4DUW4_HUMAN_00044;A8MU27_HUMAN_00044;A8MUA9_HUMAN_00 5140 PLSKLMKAYCERQ wildtype peptide Small ubiquitin-related modifier 3 044;H7BZT4_HUMAN_00045;SUMO2_HUMAN_00045 Q9HBD4_HUMAN_00455;F5H0X5_HUMAN_00455;SMCA4_HUMAN_00455;SMCA4_HUMAN_0045 5141 EARITEKLEKQQK wildtype peptide Transcription activator BRG1 5;SMCA4_HUMAN_00455;SMCA4_HUMAN_00455 Acetylome - Acetyltransferase Microarray page 144 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5142 KRGYDGKIAGLYD wildtype peptide SNF-related serine/threonine-protein kinase 5143 KTGFGGKFGVQSE wildtype peptide Src substrate cortactin 5144 VDSHHQKPVNAII wildtype peptide Staphylococcal nuclease domain-containing protein 1 5145 EKREHEKEVLQKA wildtype peptide Stathmin A2A2D0_HUMAN_00080;STMN1_HUMAN_00080 5146 RLREKDKHIEEVR wildtype peptide Stathmin STF1_HUMAN_00038;B4E2P3_HUMAN_00039;Q5T6F6_HUMAN_00038;H0Y328_HUMAN_00032 5147 SCKGFFKRTVQNN wildtype peptide Nuclear receptor subfamily 5 group A member 2 H7BXD6_HUMAN_00031;NR5A2_HUMAN_00065;NR5A2_HUMAN_00111 5148 LARLIQKYKVVLA wildtype peptide Sterol 26-hydroxylase, mitochondrial 5149 PRRLSGKDTEQIR wildtype peptide Suppressor of fused homolog SUFU_HUMAN_00303;SUFU_HUMAN_00303 5150 QASLYGKRRSQKE wildtype peptide SWI/SNF complex subunit SMARCC1 5151 RTDIYSKKTLAKS wildtype peptide SWI/SNF complex subunit SMARCC1 5152 GLVNYFKSKPVET wildtype peptide Synaptosomal-associated protein 29 5153 HQINIEKYQRCRI wildtype peptide Syntaxin-17 E9PIC2_HUMAN_00041;E9PJV6_HUMAN_00041 5154 RIDDLIKLHPESK wildtype peptide T-complex protein 1 subunit alpha E7EQR6_HUMAN_00377;F5H282_HUMAN_00308 5155 ISFPDPKMLKEWE wildtype peptide Threonine--tRNA ligase, cytoplasmic B4DEG8_HUMAN_00339;E7ERI3_HUMAN_00185;G3XAN9_HUMAN_00202 5156 EIASFDKAKLKKT wildtype peptide Thymosin beta-10 5157 ZZZMSDKPDMAEI wildtype peptide Thymosin beta-4 5158 ETIEQEKQAGESZ wildtype peptide Thymosin beta-4 5159 EPKFMSKVIGANK wildtype peptide Thyroid hormone receptor-associated protein 3 5160 LRDDFEKKMADFH wildtype peptide Thyroid hormone receptor-associated protein 3 5161 AYKKYIKDYMKSI wildtype peptide Translationally-controlled tumor protein Q8TBK7_HUMAN_00059;E9PJF7_HUMAN_00092;FKSG2_HUMAN_00093 5162 LKQSLAKVENACY wildtype peptide Translin-associated protein X E7ETY2_HUMAN_00296;E9PHK9_HUMAN_00296;TCOF_HUMAN_00296;TCOF_HUMAN_00296;T 5163 QVKASEKILQVRA wildtype peptide Treacle protein COF_HUMAN_00296;TCOF_HUMAN_00296;TCOF_HUMAN_00296 5164 LYGSIPKAAVRFG wildtype peptide Tricarboxylate transport protein, mitochondrial 5165 KVRKQTKGLYPAP wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 5166 VLCKKNKFGAPQK wildtype peptide Trifunctional enzyme subunit alpha, mitochondrial 5167 QPDEELKPKKKVF wildtype peptide Tyrosine--tRNA ligase, cytoplasmic 5168 LAAEVTKLVHGRE wildtype peptide Tyrosine--tRNA ligase, mitochondrial 5169 RGAQLAKDIARRS wildtype peptide U2 small nuclear ribonucleoprotein A H0YLR3_HUMAN_00012;H0YMA0_HUMAN_00067 C9J5L1_HUMAN_00106;C9JDJ7_HUMAN_00076;E7ET15_HUMAN_00106;E7EW00_HUMAN_0010 5170 EQEELKKKEDEKA wildtype peptide U2 snRNP-associated SURP motif-containing protein 6;H0Y8D9_HUMAN_00108;SR140_HUMAN_00106 5171 PVEKLPKYAQAGF wildtype peptide U5 small nuclear ribonucleoprotein 200 kDa helicase C9JAQ9_HUMAN_00469;F5H447_HUMAN_00144;U520_HUMAN_00469 5172 KKSKFSKAGFTAL wildtype peptide Ubinuclein-1 E5RFW5_HUMAN_00021;E5RGR5_HUMAN_00021;E5RIV3_HUMAN_00021;CH059_HUMAN_000 5173 FHIASQKNFKAKN wildtype peptide Uncharacterized protein C8orf59 21 5174 KVILDDKDYFLFR wildtype peptide Uncharacterized protein ENSP00000339461 5175 ASEIGEKYRKQPC wildtype peptide Uncharacterized protein KIAA0947 5176 VGQYLKKFRLFKZ wildtype peptide Putative peptidyl-tRNA hydrolase PTRHD1 E9PAV3_HUMAN_02007;F8VNW4_HUMAN_00140;F8VU71_HUMAN_00854;F8VZJ2_HUMAN_000 65;F8W0W4_HUMAN_00144;F8W1N5_HUMAN_00065;H0YHX9_HUMAN_00142;NACP1_HUMAN_ 5177 AAAEKFKVQGEAV wildtype peptide Nascent polypeptide-associated complex subunit alpha 00143 5178 GVGTFGKVKVGKH wildtype peptide 5-AMP-activated protein kinase catalytic subunit alpha-1 Q96E92_HUMAN_00031;AAPK1_HUMAN_00040 Q5JVS8_HUMAN_00118;B0YJC4_HUMAN_00292;B0YJC5_HUMAN_00110;F5H288_HUMAN_0027 5179 EAEEWYKSKFADL wildtype peptide Vimentin 9 5180 EIATYKKLLEGEE wildtype peptide Keratin, type II cytoskeletal 1

5181 AVHLEGKIEQAQR wildtype peptide Vinculin Q5JQ13_HUMAN_00168;F5H7T3_HUMAN_00423;G8JLL3_HUMAN_00403;VINC_HUMAN_00496 5182 TGSLETKYRWTEY wildtype peptide Voltage-dependent anion-selective channel protein 1 Acetylome - Acetyltransferase Microarray page 145 of 167

Sequence PEP_FLAG Protein name Uniprot IDs Q5JSD1_HUMAN_00031;Q5JSD2_HUMAN_00031;A2A3S1_HUMAN_00046;VDAC2_HUMAN_0004 5183 ARDIFNKGFGFGL wildtype peptide Voltage-dependent anion-selective channel protein 2 6;VDAC2_HUMAN_00020 E5RFL1_HUMAN_00020;E5RFP6_HUMAN_00020;E5RHE1_HUMAN_00020;E5RHZ6_HUMAN_000 20;E5RJN6_HUMAN_00020;F5H740_HUMAN_00020;F8W7Y3_HUMAN_00020;VDAC3_HUMAN_0 5184 AKDVFNKGYGFGM wildtype peptide Voltage-dependent anion-selective channel protein 3 0020 5185 MGVNHEKYDNSLK wildtype peptide Glyceraldehyde-3-phosphate dehydrogenase E7EU54_HUMAN_00139;E7EUT4_HUMAN_00097;E7EUT5_HUMAN_00064 ING4_HUMAN_00114;ING4_HUMAN_00090;ING4_HUMAN_00114;ING4_HUMAN_00114;ING4_HU 5186 EADLKEKQIESSD wildtype peptide Inhibitor of growth protein 4 MAN_00114;ING4_HUMAN_00114;ING4_HUMAN_00114 5187 SEFLLSKRHAIMP wildtype peptide Dynein heavy chain domain-containing protein 1 5188 KGEKIPKGKKGKA wildtype peptide Protein HMGN2P42 5189 IHFIHVKPPQLPA wildtype peptide Epoxide hydrolase 1 5190 FSAAGFKDIRSYR wildtype peptide Aspartate aminotransferase, cytoplasmic B7Z1I2_HUMAN_00107;B7Z7E9_HUMAN_00133 5191 ZMSVRGKAGKGLG wildtype peptide Histone H4-like protein type G 5192 VIDSIIKEKTGSF wildtype peptide HAL protein E7ER27_HUMAN_00046;E7EWE5_HUMAN_00022;E9PB82_HUMAN_00028;F5HE57_HUMAN_00 5193 DLGGDFKGVGKGS wildtype peptide Peroxisomal multifunctional enzyme type 2 071

5194 KHLEERKKRLEEQ wildtype peptide Ensconsin E9PCP3_HUMAN_00129;F5H1E2_HUMAN_00092;MAP7_HUMAN_00107;MAP7_HUMAN_00129 5195 RGGRMLKHKRPLA wildtype peptide Estrogen receptor alpha splice variant 5196 NRKMSRKEKDERI wildtype peptide Translocon-associated protein subunit gamma C9J365_HUMAN_00063;C9JA28_HUMAN_00115 HNF4G_HUMAN_00058;C9J7I8_HUMAN_00071;E7ERE7_HUMAN_00136;HNF4A_HUMAN_00106 HNF4A_HUMAN_00106;HNF4A_HUMAN_00136;HNF4A_HUMAN_00084;HNF4A_HUMAN_00084; 5197 RQCVVDKDKRNQC wildtype peptide Hepatocyte nuclear factor 4-alpha HNF4A_HUMAN_00084;HNF4G_HUMAN_00095 5198 REREGEKEKASWR wildtype peptide Eukaryotic translation initiation factor 3 subunit A 5199 VWDMRGKQFYNGI wildtype peptide Protein argonaute-1 B3KXD6_HUMAN_00382;B5MCF9_HUMAN_00504;H7C267_HUMAN_00127;PESC_HUMAN_0051 5200 TLKLEDKQRLAQE wildtype peptide Pescadillo homolog 6 5201 YIPTYTKPNPNQI wildtype peptide Metastasis-associated protein MTA2 5202 SGNLSEKSGDYCD wildtype peptide Hemochromatosis protein 5203 SRGVLLKASERAS wildtype peptide cDNA FLJ31668 fis, clone NT2RI2004916 5204 SHQPDKKGVPRDF wildtype peptide Monofunctional C1-tetrahydrofolate synthase, mitochondria Q4VXM0_HUMAN_00046;Q4VXM1_HUMAN_00020;H0Y2S0_HUMAN_00046

5205 YKACERKNAEAVK wildtype peptide Ankyrin repeat and SOCS box protein 2 B3KPZ6_HUMAN_00184;F5H1I7_HUMAN_00114;G3V2Z2_HUMAN_00114;ASB2_HUMAN_00216 5206 DKGGKDKKQIQTS wildtype peptide Serine/threonine-protein kinase LATS2 5207 TESHHHKAQSKZZ wildtype peptide Histone H2A type 1-A 5208 QGPQVDKEQFERV wildtype peptide Aldehyde dehydrogenase X, mitochondria 5209 EQLERLKQELPEL wildtype peptide Glycerophosphocholine phosphodiesterase GPCPD1 E9PDI1_HUMAN_00248;H0Y565_HUMAN_00223 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 5210 PIATEEKSKKFKK wildtype peptide specific NSD1_HUMAN_01826;NSD1_HUMAN_01992 5211 NCSLILKFRELIS wildtype peptide Uncharacterized protein C3orf33 5212 ZZMKSGKDSQIPG wildtype peptide CDNA FLJ26514 fis, clone KDN07578 5213 TQMPKWKESSHQG wildtype peptide Cadherin-related family member 3 E7EQG5_HUMAN_00724;F5H0Z2_HUMAN_00812 5214 DGVDFGKWRAVLR wildtype peptide Fructose-bisphosphate aldolase B Q5T7D5_HUMAN_00074;C9J4K3_HUMAN_00147 5215 ARIAVKKAQLRSA wildtype peptide Histone acetyltransferase KAT2B 5216 TEENENKIKKLKG wildtype peptide RB1-inducible coiled-coil protein 1 Q6P2G1_HUMAN_00531;C9JXE5_HUMAN_00541;E5RHK8_HUMAN_00531;E5RIK2_HUMAN_004 5217 SNIGIMKGGSKGY wildtype peptide Dynamin-3 21;DYN3_HUMAN_00531;DYN3_HUMAN_00531;DYN3_HUMAN_00541 C9JTS2_HUMAN_00366;E9PEW9_HUMAN_00366;E9PEX0_HUMAN_00260;H3BLV6_HUMAN_00 383;41_HUMAN_00366;41_HUMAN_00157;41_HUMAN_00157;41_HUMAN_00331;41_HUMAN_00 5218 TKELEEKVMELHK wildtype peptide Protein 4.1 122;41_HUMAN_00366 Acetylome - Acetyltransferase Microarray page 146 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5219 SLHQRIKNGEKPF wildtype peptide Zinc finger protein 182

5220 AGKDCSKDSDDVL wildtype peptide Mitogen-activated protein kinase kinase kinase 4 F5H0A4_HUMAN_00890;F5H4R1_HUMAN_00890;F5H538_HUMAN_00890;M3K4_HUMAN_00890 5221 MRKTKKKGSGEAD wildtype peptide Tubby-related protein 1 Q5TGM7_HUMAN_00152;Q5TGM8_HUMAN_00147;TULP1_HUMAN_00147 5222 SKSSKGKDGVEVE wildtype peptide Ataxin 7-like 2 5223 KTHTKRKAEFEEQ wildtype peptide CGG triplet repeat-binding protein 1 E7ESW5_HUMAN_00029;E9PED6_HUMAN_00028;F8W9U9_HUMAN_00029;H0Y5T2_HUMAN_00 5224 SKNKDGKEQSETV wildtype peptide Rho GTPase-activating protein 21 018;RHG21_HUMAN_00028 5225 MRKLWSKKLITDD wildtype peptide Olfactory receptor 4C16 5226 SKSGDSKITFDSE wildtype peptide DBF4-type zinc finger-containing protein 2 A4QN19_HUMAN_01493;C9JVR0_HUMAN_00461;H0Y5S1_HUMAN_00233;SC16A_HUMAN_0192 5227 KETKEPKKGESWF wildtype peptide Protein transport protein Sec16A 5;SC16A_HUMAN_01925;SC16A_HUMAN_01925;SC16A_HUMAN_01925

5228 VTSDRSKNRKRHF wildtype peptide 60S ribosomal protein L26 RL26L_HUMAN_00013;A6NE05_HUMAN_00013;E5RIT6_HUMAN_00013;E5RHH1_HUMAN_00013 5229 FEKFLIKSIAENR wildtype peptide Methyltransferase-like protein 7A F8VQX6_HUMAN_00109;H0YI09_HUMAN_00109 5230 RITSWPKENPGSW wildtype peptide Collagen alpha-1(V) chain 5231 EQKKKQKRQENIA wildtype peptide UPF0542 protein C5orf43 5232 NNHGKSKTCCENK wildtype peptide Protein MB21D1 A6PW79_HUMAN_00394;M21D1_HUMAN_00394 5233 SIKLDGKGEPKGA wildtype peptide Ras GTPase-activating-like protein IQGAP2 F5H7S7_HUMAN_00969;IQGA2_HUMAN_00963 E7ETG7_HUMAN_00098;E7EX16_HUMAN_00201;E9PG35_HUMAN_00201;E9PHF7_HUMAN_001 5234 DAMLIEKFVDTPR wildtype peptide Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial 39;F5GYT8_HUMAN_00113;F5H2T9_HUMAN_00139;G5E9X5_HUMAN_00210 5235 VDEQIKKQQETLV wildtype peptide Zinc finger protein 568 5236 QVEGIQKSGTKKL wildtype peptide Kinectin KTN1_HUMAN_00265;KTN1_HUMAN_00265 5237 YRIRCGKKPSQKA wildtype peptide FERM domain-containing protein 4B E9PGA7_HUMAN_00213;F5H6F3_HUMAN_00507;FRM4B_HUMAN_00507 5238 VCRKTFKRKDYLK wildtype peptide Transcription factor IIIA 5239 MWRQEEKIREQEE wildtype peptide Golgin subfamily A member 6-like protein 1 H0YM25_HUMAN_00404;GG6L6_HUMAN_00438

B3KNT8_HUMAN_00165;B3KV44_HUMAN_00097;B7Z9C2_HUMAN_00123;F5H4R6_HUMAN_001 65;F8VUX1_HUMAN_00138;F8VV59_HUMAN_00124;F8VXI6_HUMAN_00171;F8VY35_HUMAN_00 165;F8W020_HUMAN_00172;F8W0J6_HUMAN_00176;F8W118_HUMAN_00124;F8W543_HUMAN 5240 EEKEDPKGIPEFW wildtype peptide Nucleosome assembly protein 1-like 1 _00102;H0YH88_HUMAN_00105;H0YHC3_HUMAN_00126;H0YIV4_HUMAN_00159 5241 SSEKTEKKEEVVK wildtype peptide Regulator of nonsense transcripts 3B 5242 ETQVILKKGKKVI wildtype peptide WD repeat-containing protein 87 E7ESW6_HUMAN_01407;WDR87_HUMAN_01407 5243 KAQDWEKHFLDAS wildtype peptide Calreticulin-3 5244 PLASDLKGYFKVK wildtype peptide Coiled-coil domain-containing protein 110 D3DP61_HUMAN_00565;CC110_HUMAN_00783 5245 SEPSEMKAMALKG wildtype peptide Rho GTPase-activating protein 32 G3V174_HUMAN_00614;H0Y810_HUMAN_00622;RHG32_HUMAN_00339 5246 LLSWTKKFKARGV wildtype peptide Putative hexokinase HKDC1 HKDC1_HUMAN_00174;HKDC1_HUMAN_00174 5247 NTSKVVKLEKNLQ wildtype peptide Myb-related protein A 5248 DVEKNRKIVAENL wildtype peptide Beclin-1 B4DS82_HUMAN_00119;E7EV84_HUMAN_00130 5249 KISDLWKAHPGKI wildtype peptide Protein KIAA1199 C9JCC4_HUMAN_00348;K1199_HUMAN_00348 5250 GLMAVLKAVRENA wildtype peptide Tropomodulin-4 CE57L_HUMAN_00110;E5RFY4_HUMAN_00110;E5RG21_HUMAN_00110;E5RG82_HUMAN_0011 0;E5RHF8_HUMAN_00110;E5RIV2_HUMAN_00110;G3V140_HUMAN_00113;G5E992_HUMAN_00 5251 AHQELIKQKKDIS wildtype peptide C6orf182 protein 110 E7EVA7_HUMAN_01565;E9PGY5_HUMAN_01588;F8VU38_HUMAN_01418;F8VV34_HUMAN_015 65;F8VZP8_HUMAN_01418;F8W1C2_HUMAN_01418;MDC1_HUMAN_01588;MDC1_HUMAN_015 5252 TAEKPGKEEDVVT wildtype peptide Mediator of DNA damage checkpoint protein 1 65;MDC1_HUMAN_00829 5253 MRPVKHKWTMISR wildtype peptide Immunoglobulin superfamily member 10 5254 DYKNYEKKLSKKW wildtype peptide Uncharacterized protein C8orf48 5255 SIIDKLKPFSFIL wildtype peptide Sacsin Acetylome - Acetyltransferase Microarray page 147 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5256 QSPTNSKAQKKNR wildtype peptide Glutamate [NMDA] receptor subunit epsilon-2 5257 NCQGSCKSQSPMF wildtype peptide cDNA FLJ59639 5258 HQQGTEKLSDLTL wildtype peptide Pleckstrin homology domain-containing family G member 1 5259 RVHTGEKHFQCNQ wildtype peptide Zinc finger protein 33B E7ETX9_HUMAN_00355;E7EVK5_HUMAN_00321 5260 KFKDPLKDGEAKI wildtype peptide V-type proton ATPase catalytic subunit A B7Z1R5_HUMAN_00558;B7Z2V6_HUMAN_00308 5261 VDLLDSKTFCRAQ wildtype peptide ETS homologous factor E9PSB2_HUMAN_00186;E9PQR6_HUMAN_00164 KS6A6_HUMAN_00367;B4DG22_HUMAN_00336;B7ZB17_HUMAN_00336;B7ZL90_HUMAN_00367 5262 DPEFTAKTPKDSP wildtype peptide Ribosomal protein S6 kinase alpha-3 ;F5GYC4_HUMAN_00335 5263 SSVLDKKEGEQAK wildtype peptide Leucine-rich repeat-containing protein 8B B4DDR3_HUMAN_00051;E9PQK6_HUMAN_00051;G3V1C3_HUMAN_00051;API5_HUMAN_00051 5264 AAQFIPKFFKHFP wildtype peptide Apoptosis inhibitor 5 ;API5_HUMAN_00051 5265 GARKLKKLGNLKL wildtype peptide Androgen receptor F5GZG9_HUMAN_00634;F5H341_HUMAN_00444;ANDR_HUMAN_00102 SRGP1_HUMAN_00216;F5H5V9_HUMAN_00096;G5EA48_HUMAN_00176;SRGP3_HUMAN_0021 5266 QRRSSVKKIEKMK wildtype peptide SLIT-ROBO Rho GTPase-activating protein 3 6;SRGP3_HUMAN_00216;SRGP1_HUMAN_00216 5267 STTTNEKITKLYE wildtype peptide AT-rich interactive domain-containing protein 1A ARI1A_HUMAN_01007;ARI1A_HUMAN_00624 5268 LVQTEGKERSLGE wildtype peptide N-acetylserotonin O-methyltransferase-like protein E7ER97_HUMAN_00507;F5GXH4_HUMAN_00525;ASML_HUMAN_00567 5269 IMTPSVKVEKIHP wildtype peptide Ataxin-7 E9PHP9_HUMAN_00112;ATX7_HUMAN_00257 5270 KAVKTVKKKDKGK wildtype peptide Coiled-coil domain containing 7 (Fragment) 5271 ASKTGKKGKGSKG wildtype peptide C-C motif chemokine 21 5272 AQQQRPKTRRVAP wildtype peptide Cyclin-A2 5273 ZALHVPKAPGFAQ wildtype peptide T-complex protein 1 subunit theta B7Z1C9_HUMAN_00238;B8ZZC9_HUMAN_00324;F5GZK5_HUMAN_00266;TCPH_HUMAN_00162 5274 FFTGCPKAKTCTF wildtype peptide T-complex protein 1 subunit eta ;TCPH_HUMAN_00322;TCPH_HUMAN_00279 5275 GQVVAMKKIRLES wildtype peptide Cyclin-dependent kinase 1 E5RIU6_HUMAN_00033;CDK1_HUMAN_00033 E7EX29_HUMAN_00068;E5RIR4_HUMAN_00068;E7ESK7_HUMAN_00068;E7EVZ2_HUMAN_000 5276 VSSIEQKTEGAEK wildtype peptide 14-3-3 protein zeta/delta 68;E9PD24_HUMAN_00068 E9PCR7_HUMAN_00985;E9PDF2_HUMAN_00981;E9PFG7_HUMAN_00820;F5H801_HUMAN_009 5277 GYYDYVKPRLRTT wildtype peptide 2-oxoglutarate dehydrogenase, mitochondrial 21;ODO1_HUMAN_00966 5278 IIRTFLKENCFRQ wildtype peptide 2-5-oligoadenylate synthase 2 5279 RYIVLAKDFEKAY wildtype peptide 26S protease regulatory subunit 6B 5280 GSELVQKFIGEGA wildtype peptide 26S protease regulatory subunit 8 5281 SSAFVGKTPEASP wildtype peptide 26S proteasome non-ATPase regulatory subunit 1 5282 AVLKYYKVDENGK wildtype peptide Ubiquitin-40S ribosomal protein S27a UBC_HUMAN_00011;RS27A_HUMAN_00011;RL40_HUMAN_00011;B2RDW1_HUMAN_00011;B4 DV12_HUMAN_00011;Q96C32_HUMAN_00011;F5GXK7_HUMAN_00011;F5GYU3_HUMAN_00011 ;F5GYX6_HUMAN_00011;F5GZ39_HUMAN_00011;F5H041_HUMAN_00011;F5H265_HUMAN_000 11;F5H2Z3_HUMAN_00011;F5H388_HUMAN_00011;F5H4D8_HUMAN_00011;F5H6Q2_HUMAN_0 5283 VKTLTGKTITLEV wildtype peptide Polyubiquitin-B 0011;F5H747_HUMAN_00011;F5H7K6_HUMAN_00011;F5H7Y5_HUMAN_00011 D6RG13_HUMAN_00014;D6RI02_HUMAN_00034;E9PFI5_HUMAN_00034;F5H4F9_HUMAN_0002 5284 KDWYDVKAPAMFN wildtype peptide 40S ribosomal protein S3a 1;H0Y8L7_HUMAN_00029;H0Y9Y4_HUMAN_00028 D6RAS7_HUMAN_00108;D6RAT0_HUMAN_00108;D6RB09_HUMAN_00108;D6RG13_HUMAN_00 125;E9PFI5_HUMAN_00145;F5H4F9_HUMAN_00132;H0Y8L7_HUMAN_00140;D6R9B6_HUMAN_0 5285 CVGFTKKRNNQIR wildtype peptide 40S ribosomal protein S3a 0026;H0Y9Y4_HUMAN_00089

5286 KHWMLDKLTGVFA wildtype peptide 40S ribosomal protein S4, X isoform RS4Y2_HUMAN_00022;RS4Y1_HUMAN_00022;A6NH36_HUMAN_00022;C9JEH7_HUMAN_00031 5287 EAAEYAKLLAKRM wildtype peptide 40S ribosomal protein S6 5288 VDIPLDKTVVNKD wildtype peptide 60S ribosomal protein L27 5289 HRINFDKYHPGYF wildtype peptide 60S ribosomal protein L27a 5290 QRYESLKGVDPKF wildtype peptide 60S ribosomal protein L29 5291 FIDTTSKFGHGRF wildtype peptide 60S ribosomal protein L3 RL3L_HUMAN_00373;F2Z3A5_HUMAN_00324;G5E9G0_HUMAN_00321 Acetylome - Acetyltransferase Microarray page 148 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5292 VYLYTKKVGKAPK wildtype peptide 60S ribosomal protein L34 5293 DLRGKKKEELLKQ wildtype peptide 60S ribosomal protein L35 F2Z388_HUMAN_00014;H0Y3A0_HUMAN_00014 5294 KQVAPEKPVKKQK wildtype peptide Activated RNA polymerase II transcriptional coactivator p15 D6R970_HUMAN_00035;D6RC37_HUMAN_00035;F5H1H8_HUMAN_00035 B4DUR9_HUMAN_00212;G3V438_HUMAN_00077;H0YJ63_HUMAN_00014;H0YJG7_HUMAN_001 5295 TCKITLKETFLTS wildtype peptide Activator of 90 kDa heat shock protein ATPase homolog 1 58 B7TY16_HUMAN_00195;G3V2N5_HUMAN_00174;G3V2W4_HUMAN_00130;G3V2X9_HUMAN_00 5296 ELIDYGKLRKDDP wildtype peptide Alpha-actinin-1 130;H9KV75_HUMAN_00130;ACTN1_HUMAN_00195;ACTN1_HUMAN_00195 D6R9Z3_HUMAN_00041;D6RCD8_HUMAN_00041;D6RDK9_HUMAN_00041;D6RGK6_HUMAN_00 5297 PVRAFAKELFLGK wildtype peptide Acyl-CoA dehydrogenase family member 9, mitochondrial 041;D6RJA8_HUMAN_00041;E7EPE0_HUMAN_00041 5298 SQAEFEKAAEEVR wildtype peptide Acyl-CoA-binding protein 5299 EEVRHLKTKPSDE wildtype peptide Acyl-CoA-binding protein ACBP_HUMAN_00034;ACBP_HUMAN_00018;ACBP_HUMAN_00059;ACBP_HUMAN_00078 AK1C3_HUMAN_00075;AK1C2_HUMAN_00075;AK1C1_HUMAN_00075;B4DK69_HUMAN_00075; B4DKR9_HUMAN_00075;A6NHU4_HUMAN_00077;B5ME26_HUMAN_00060;E9PBP5_HUMAN_00 5300 IADGSVKREDIFY wildtype peptide Aldo-keto reductase family 1 member C4 075;H0Y804_HUMAN_00042 5301 NLVVIPKSVTPER wildtype peptide Aldose reductase 5302 WGYNDSKFIFNKK wildtype peptide Alkyldihydroxyacetonephosphate synthase, peroxisoma 5303 LKHFEAKIEKHNH wildtype peptide Alpha-2-macroglobulin receptor-associated protein 5304 INSKWEKVQQLVP wildtype peptide Alpha-actinin-4 D6PXK4_HUMAN_00406;F5GXS2_HUMAN_00235;H7C144_HUMAN_00061 5305 VIFLDVKHFSPED wildtype peptide Alpha-crystallin A chain E7EWH7_HUMAN_00058;E9PHE4_HUMAN_00041 B7Z582_HUMAN_00357;A6NN80_HUMAN_00483;E5RK69_HUMAN_00276;E7EMC6_HUMAN_001 5306 YKEDYHKSLEDAL wildtype peptide Annexin A6 40;E9PGK1_HUMAN_00451 B7Z582_HUMAN_00319;A6NN80_HUMAN_00445;E5RK69_HUMAN_00238;E7EMC6_HUMAN_001 5307 YDAKQLKKAMEGA wildtype peptide Annexin A6 02;E9PGK1_HUMAN_00413 5308 RTPSVGKAMDTPK wildtype peptide Antigen KI-67 F5H4V4_HUMAN_02263;KI67_HUMAN_01904 B3KXW5_HUMAN_00101;B4DGE1_HUMAN_00078;E7EUH1_HUMAN_00160;H3BN71_HUMAN_00 078;H3BNR4_HUMAN_00078;H3BR36_HUMAN_00078;H3BRM7_HUMAN_00078;H3BS13_HUMA 5309 KLIASQKFTDKRI wildtype peptide AP-1 complex subunit gamma-1 N_00078;H3BUN9_HUMAN_00078;H3BV30_HUMAN_00078;AP1G1_HUMAN_00078 5310 KSGALSKYAKKIF wildtype peptide AP-3 complex subunit beta-1 E5RJ68_HUMAN_00543;F5GXG9_HUMAN_00592;F5H093_HUMAN_00496 G3V1C3_HUMAN_00251;API5_HUMAN_00179;API5_HUMAN_00251;API5_HUMAN_00251;API5_H 5311 AVPLFSKNVHSTR wildtype peptide Apoptosis inhibitor 5 UMAN_00197 5312 EEKEDVKSCAEWV wildtype peptide ATP synthase subunit d, mitochondrial 5313 LVDDFEKKFNALK wildtype peptide ATP synthase subunit d, mitochondrial 5314 RAIQSLKKIVNSA wildtype peptide ATP synthase subunit g, mitochondrial 5315 GPEDKKKHLLIGV wildtype peptide ATP synthase subunit gamma, mitochondrial B4DL14_HUMAN_00043;ATPG_HUMAN_00090 5316 AASKQNKLEQVEK wildtype peptide ATP synthase subunit O, mitochondrial 5317 ELKTVLKSFLSQG wildtype peptide ATP synthase subunit O, mitochondrial Q5SV16_HUMAN_00158;E9PDY1_HUMAN_00172;G3V1I6_HUMAN_00416;H0Y2W2_HUMAN_004 5318 FDKYVLKPATEGK wildtype peptide ATPase family AAA domain-containing protein 3A 81;ATD3A_HUMAN_00495 5319 EEIVHHKKEIERL wildtype peptide ATPase inhibitor, mitochondrial 5320 KAVGWEKNQKGGM wildtype peptide Ubiquitin-like modifier-activating enzyme ATG7 C9JTK7_HUMAN_00267;E9PB95_HUMAN_00267;ATG7_HUMAN_00306 B5ME99_HUMAN_00110;C9K0G3_HUMAN_00110;E9PKJ9_HUMAN_00073;E9PNR0_HUMAN_001 5321 FSSLKGKVKRDRS wildtype peptide B-cell CLL/lymphoma 9-like protein 10;BCL9L_HUMAN_00105;BCL9L_HUMAN_00110;BCL9L_HUMAN_00110 5322 QQQESLKHATRII wildtype peptide BAG family molecular chaperone regulator 2 B4DXE2_HUMAN_00078;A2A296_HUMAN_00060 5323 LFREWLKDTCGAN wildtype peptide Barrier-to-autointegration factor 5324 VVVKEEKIHSPII wildtype peptide Bromodomain-containing protein 4 5325 GQAPTEKGHTRTA wildtype peptide C-1-tetrahydrofolate synthase, cytoplasmic F5H2F4_HUMAN_00609;G3V2B8_HUMAN_00553;G3V3L6_HUMAN_00533 5326 LRNVIDKLAQFVA wildtype peptide Calcium homeostasis endoplasmic reticulum protein 5327 CAKKILKHEGLGA wildtype peptide Calcium-binding mitochondrial carrier protein SCaMC-1 5328 ASEELQKDLEEVK wildtype peptide Calcyclin-binding protein B2ZWH1_HUMAN_00008;CYBP_HUMAN_00008 5329 IVNNLLKPISVEG wildtype peptide Calcyclin-binding protein B3KSF1_HUMAN_00107;Q5R370_HUMAN_00091 Acetylome - Acetyltransferase Microarray page 149 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5330 KCQQAEKILKEQE wildtype peptide Stress-induced-phosphoprotein 1 F5H0T1_HUMAN_00320;G3XAD8_HUMAN_00391 5331 AMKDYTKAMDVYQ wildtype peptide Stress-induced-phosphoprotein 1 F5H0T1_HUMAN_00422;G3XAD8_HUMAN_00493;H0YGI8_HUMAN_00045 5332 FPGVVLKPAASRG wildtype peptide FYN-binding protein B4DLN2_HUMAN_00275;F5H8I8_HUMAN_00265;FYB_HUMAN_00265 5333 CALKFLKLEDFLD wildtype peptide Serine/threonine-protein kinase N1 PKN1_HUMAN_00454;PKN1_HUMAN_00448

5334 LCALAKKHKRTPA wildtype peptide Aldo-keto reductase family 1 member C3 AK1C2_HUMAN_00247;AK1C1_HUMAN_00247;B4DK69_HUMAN_00221;H0Y804_HUMAN_00214 5335 EIAQDFKTDLRFQ wildtype peptide Histone H3.1 H33_HUMAN_00080;H31T_HUMAN_00080;H32_HUMAN_00080;B4DEB1_HUMAN_00080 5336 KEPLYEKDSSVAA wildtype peptide Cleavage and polyadenylation specificity factor subunit 5 5337 VVQNFAKEFVISD wildtype peptide Coactosin-like protein 5338 KLGAKGKEVDNFV wildtype peptide Coatomer subunit delta B0YIW6_HUMAN_00274;E9PEU4_HUMAN_00145 E9PK25_HUMAN_00111;E9PLJ3_HUMAN_00056;E9PP50_HUMAN_00073;E9PQB7_HUMAN_000 5339 PYATFVKMLPDKD wildtype peptide Cofilin-1 56;E9PS23_HUMAN_00073;G3V1A4_HUMAN_00056 5340 LAPLKSKMIYASS wildtype peptide Destrin F6RFD5_HUMAN_00114;DEST_HUMAN_00097 5341 EHHLLEKIDHLKE wildtype peptide Coiled-coil domain-containing protein 109B 5342 QKHNHSKSTWLIL wildtype peptide Cytochrome b5 F8WEU4_HUMAN_00024;CYB5_HUMAN_00024 5343 RNYDVMKDFEEMR wildtype peptide Cytochrome c oxidase subunit 6C 5344 RKIRNTKYPIQRA wildtype peptide Cytoplasmic dynein 1 heavy chain 1 5345 RSTALLKSLSAER wildtype peptide Cytoplasmic dynein 1 heavy chain 1 A8MUM2_HUMAN_00901;E7EVF4_HUMAN_01037;E7EVJ5_HUMAN_01011;E7EW33_HUMAN_00 841;E7EWA4_HUMAN_01062;F5H583_HUMAN_00962;H7C229_HUMAN_00736;CYFP2_HUMAN_ 5346 LPRVYIKEGERLE wildtype peptide Cytoplasmic FMR1-interacting protein 2 01037 F5GWE2_HUMAN_00048;BACH_HUMAN_00036;BACH_HUMAN_00036;BACH_HUMAN_00036;B 5347 HGGTILKMIEEAG wildtype peptide Cytosolic acyl coenzyme A thioester hydrolase ACH_HUMAN_00048;BACH_HUMAN_00027

5348 KMAHISKYDRVVR wildtype peptide DNA mismatch repair protein Msh6 B4DF41_HUMAN_00374;F5H2F9_HUMAN_00202;F5H769_HUMAN_00502;MSH6_HUMAN_00504 5349 SLVQDLKILRTLL wildtype peptide DNA repair endonuclease XPF E7ETX4_HUMAN_00278;F8W7K7_HUMAN_00278

5350 IEHNLSKIMKLDN wildtype peptide DNA repair protein RAD50 E7EN38_HUMAN_00264;E7ESD9_HUMAN_00264;RAD50_HUMAN_00270;RAD50_HUMAN_00125 5351 SAAFMKKYIHVAK wildtype peptide DNA replication licensing factor MCM3 Q7Z6P5_HUMAN_00065;E9PF11_HUMAN_00067 5352 LLKFVEKCSPIGV wildtype peptide DNA replication licensing factor MCM5 B1AHB1_HUMAN_00353;E7EQY5_HUMAN_00305 5353 CDEVQPKHVKEAF wildtype peptide DNA replication licensing factor MCM6 Q5H962_HUMAN_00509;E7EVU8_HUMAN_00509;E9PD66_HUMAN_00509;E9PEH3_HUMAN_002 5354 QRAALLKSMLNFL wildtype peptide E3 ubiquitin-protein ligase HUWE1 16;H0Y7U1_HUMAN_00188;HUWE1_HUMAN_00509;HUWE1_HUMAN_00509 5355 SGRTAEKTSLSFK wildtype peptide E3 ubiquitin-protein ligase TRIM33 E7EN20_HUMAN_00395;H0Y612_HUMAN_00524;TRI33_HUMAN_00763 5356 TKCSSVKYDVEIV wildtype peptide E3 ubiquitin-protein ligase UBR4 UBR4_HUMAN_01084;UBR4_HUMAN_01084;UBR4_HUMAN_01084;UBR4_HUMAN_01084 5357 KYSNVMKLLRMAL wildtype peptide Probable glutamate--tRNA ligase, mitochondrial H3BRF5_HUMAN_00486;H3BTB7_HUMAN_00486 Electron transfer flavoprotein-ubiquinone oxidoreductase, 5358 LAVAHEKDIRVCL wildtype peptide mitochondrial 5359 DAKKKAKEEEEAE wildtype peptide Electroneutral sodium bicarbonate exchanger 1 5360 PDTILQKDTRLYF wildtype peptide Eukaryotic translation initiation factor 2 subunit 2 B4DV79_HUMAN_00212;C9JQN7_HUMAN_00016;C9JZG1_HUMAN_00249;F8W8C8_HUMAN_00 5361 PEKQPFKDLGNLR wildtype peptide Eukaryotic translation initiation factor 3 subunit B 288;EIF3B_HUMAN_00288 B4DDN4_HUMAN_00437;B4DRU0_HUMAN_00380;B4DVQ5_HUMAN_00543;B4DVU3_HUMAN_0 0406;B5ME19_HUMAN_00559;C9J1F3_HUMAN_00407;C9JJ55_HUMAN_00381;F5GZ22_HUMAN_ 00430;F5GZC5_HUMAN_00438;F5H1I1_HUMAN_00429;F5H4V1_HUMAN_00544;H3BRV0_HUMA 5362 CKYIYAKDRTDRI wildtype peptide Eukaryotic translation initiation factor 3 subunit C N_00548 B0QY90_HUMAN_00367;B3KNG0_HUMAN_00198;B0QY89_HUMAN_00508;G8JLH4_HUMAN_004 5363 TIRSFLKLYTTMP wildtype peptide Eukaryotic translation initiation factor 3 subunit L 17 5364 CIVRALKDPNAFL wildtype peptide Eukaryotic translation initiation factor 3 subunit M B4E2Q4_HUMAN_00081;H0YCQ8_HUMAN_00054 Acetylome - Acetyltransferase Microarray page 150 of 167

Sequence PEP_FLAG Protein name Uniprot IDs IF4G1_HUMAN_00950;Q504Z1_HUMAN_00664;C9JF13_HUMAN_00891;D3DNT2_HUMAN_00951 E7EUU4_HUMAN_00911;E7EX73_HUMAN_00787;E9PFM1_HUMAN_00957;E9PGM1_HUMAN_00 864;F5H564_HUMAN_00548;F5H8J4_HUMAN_00434;G5E9S1_HUMAN_00755;H7BYW0_HUMAN _01140;IF4G3_HUMAN_00950;IF4G1_HUMAN_00910;IF4G1_HUMAN_00863;IF4G1_HUMAN_0078 5365 KDLDFEKAKPRMD wildtype peptide Eukaryotic translation initiation factor 4 gamma 3 6;IF4G1_HUMAN_00754 5366 RNSCLIKRVTSVL wildtype peptide FAST kinase domain-containing protein 1 D3DPC4_HUMAN_00337;FAKD1_HUMAN_00360 5367 AHGTGTKVGDPQE wildtype peptide Fatty acid synthase 5368 TVGSAEKRAYLQA wildtype peptide Fatty acid synthase 5369 QDVCKPKYSGTLN wildtype peptide Fatty acid synthase 5370 MSCTIEKALADAK wildtype peptide FGFR1 oncogene partner 2 F5GX47_HUMAN_00007;FGOP2_HUMAN_00007;FGOP2_HUMAN_00007 A6NDY9_HUMAN_00481;Q5HY54_HUMAN_00508;F8WE98_HUMAN_00481;FLNA_HUMAN_0050 5371 DFKVYTKGAGSGE wildtype peptide Filamin-A 8 5372 QTAELTKVFEIRT wildtype peptide Glia maturation factor gamma 5373 TPLGCYKKLIEYH wildtype peptide Glucosamine-6-phosphate isomerase 2 GNPI2_HUMAN_00050;GNPI2_HUMAN_00050 5374 IFHQQCKRNELVI wildtype peptide Glucose-6-phosphate 1-dehydrogenase E9PDV8_HUMAN_00386;G6PD_HUMAN_00432;G6PD_HUMAN_00416 5375 KWVNPHKLZZZZZ wildtype peptide Glucose-6-phosphate 1-dehydrogenase G6PD_HUMAN_00560;G6PD_HUMAN_00544 DHE4_HUMAN_00480;B3KV55_HUMAN_00313;B4DGN5_HUMAN_00347;F5GYQ4_HUMAN_0041 5376 LERKFGKHGGTIP wildtype peptide Glutamate dehydrogenase 1, mitochondrial 2;F8WA20_HUMAN_00437;H0YFJ0_HUMAN_00179 DHE4_HUMAN_00457;B3KV55_HUMAN_00290;B4DGN5_HUMAN_00324;F5GYQ4_HUMAN_0038 5377 YGRLTFKYERDSN wildtype peptide Glutamate dehydrogenase 1, mitochondrial 9;F8WA20_HUMAN_00414;H0YFJ0_HUMAN_00156

5378 HRQQRRKDPEGTP wildtype peptide Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase MESH1 H0YNP9_HUMAN_00025;MESH1_HUMAN_00025 HSP76_HUMAN_00350;B4DHP5_HUMAN_00326;E7EP94_HUMAN_00257;E7EQL7_HUMAN_0027 0;F5GZ62_HUMAN_00331;F5H1D3_HUMAN_00330;F8VZJ4_HUMAN_00325;H0YG33_HUMAN_00 5379 RIPKVQKLLQDFF wildtype peptide Heat shock 70 kDa protein 1A/1B 415;Q5SP16_HUMAN_00183 5380 HAAPFSKVLTFYR wildtype peptide Heat shock 70 kDa protein 4 E7ET08_HUMAN_00088;E9PK54_HUMAN_00088;E9PKE3_HUMAN_00088;E9PLF4_HUMAN_000 88;E9PN25_HUMAN_00088;E9PN89_HUMAN_00028;E9PNE6_HUMAN_00088;E9PPY6_HUMAN_ 5381 VVQSDMKHWPFMV wildtype peptide Heat shock cognate 71 kDa protein 00088;E9PQK7_HUMAN_00088;E9PQQ4_HUMAN_00088;HSP7C_HUMAN_00088 HSP72_HUMAN_00351;A8K7Q2_HUMAN_00112;B3KUS2_HUMAN_00125;E7ET08_HUMAN_0034 8;E9PKE3_HUMAN_00329;E9PN89_HUMAN_00288;E9PNE6_HUMAN_00202;HSP7C_HUMAN_00 5382 RIPKIQKLLQDFF wildtype peptide Heat shock cognate 71 kDa protein 348 A8K7Q2_HUMAN_00361;E9PKE3_HUMAN_00578;E9PNE6_HUMAN_00451;E9PS65_HUMAN_001 5383 EFEHQQKELEKVC wildtype peptide Heat shock cognate 71 kDa protein 88 Q2L7G6_HUMAN_00328;E7ERE4_HUMAN_00370;E7ETM7_HUMAN_00206;HNRPR_HUMAN_003 5384 SFSEFGKLERVKK wildtype peptide Heterogeneous nuclear ribonucleoprotein R 69 5385 EYIEENKYSRAKS wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00190;Q5RI18_HUMAN_00042;HNRPU_HUMAN_00246 5386 AAENPGKYNILGT wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00449;HNRPU_HUMAN_00505 5387 PEHAVLKMKGNFT wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00560;HNRPU_HUMAN_00616 5388 KTQWALKYAKENP wildtype peptide Heterogeneous nuclear ribonucleoprotein U-like protein 2 5389 QYKEESKKALPPE wildtype peptide Heterogeneous nuclear ribonucleoprotein U B3KX72_HUMAN_00599;HNRPU_HUMAN_00655 5390 QQLQLGKILTKTG wildtype peptide Histone deacetylase 5 HDAC5_HUMAN_00533;HDAC5_HUMAN_00534 5391 VSELITKAVAASK wildtype peptide Histone H1.4 H15_HUMAN_00049;H13_HUMAN_00047;H12_HUMAN_00046 5392 IPAPAEKTPVKKK wildtype peptide Histone H1.3 5393 PKAVKPKAAKPKA wildtype peptide Histone H1.5 5394 KKGAGAKKDKGGK wildtype peptide Histone H1x H2A1_HUMAN_00007;H2A1D_HUMAN_00007;H2A2C_HUMAN_00007;H2A2A_HUMAN_00007;H2 A3_HUMAN_00007;H2A2B_HUMAN_00007;H2A1C_HUMAN_00007;H2A1H_HUMAN_00007;H2A1 5395 ZMSGRGKQGGKAR wildtype peptide Histone H2A type 1-B/E A_HUMAN_00007;H2A1J_HUMAN_00007 5396 ETRGVLKVFLENV wildtype peptide Histone H4 Acetylome - Acetyltransferase Microarray page 151 of 167

Sequence PEP_FLAG Protein name Uniprot IDs Q5JP01_HUMAN_00039;E9PC52_HUMAN_00110;E9PFM2_HUMAN_00085;RBBP7_HUMAN_0016 5397 KIECEIKINHEGE wildtype peptide Histone-binding protein RBBP7 3 5398 KESSVVKNVVDSS wildtype peptide Histone-lysine N-methyltransferase MLL E9PQG7_HUMAN_01235;E9PR05_HUMAN_01268;MLL1_HUMAN_01235 5399 AKMVALKGIKKVM wildtype peptide Histone-lysine N-methyltransferase MLL2 5400 PVAAMRKEADMLR wildtype peptide Histone-lysine N-methyltransferase MLL2 5401 KIEATQKLEQVKN wildtype peptide Histone-lysine N-methyltransferase MLL3 MLL3_HUMAN_00833;MLL3_HUMAN_01772 5402 NRKLLEKHITAKE wildtype peptide Inositol 1,4,5-trisphosphate receptor type 2 5403 AVAFRFKDKERPR wildtype peptide Insulin-degrading enzyme B4DM87_HUMAN_00446;C9IYS7_HUMAN_00377;G3V1S5_HUMAN_00481;INT11_HUMAN_00374 5404 LLPEAKKPRLLHG wildtype peptide Integrator complex subunit 11 INT11_HUMAN_00453 IRF2_HUMAN_00078;Q6IAS7_HUMAN_00078;C9J9C5_HUMAN_00078;C9JD95_HUMAN_00078;D 6R9N5_HUMAN_00078;D6RB08_HUMAN_00078;D6RB34_HUMAN_00078;D6RCK5_HUMAN_0007 5405 PDPKTWKANFRCA wildtype peptide Interferon regulatory factor 1 8 5406 ZZZZMNKPITPST wildtype peptide Interleukin-1 receptor-associated kinase 4 F8VR40_HUMAN_00007;F8VVZ1_HUMAN_00007;F8VW24_HUMAN_00007 5407 ELENKKKELHFLQ wildtype peptide Intraflagellar transport protein 81 homolog F8W1J4_HUMAN_00260;H0YHE2_HUMAN_00260;IFT81_HUMAN_00290 E9PH51_HUMAN_00014;F5GXH2_HUMAN_00014;F5GXY2_HUMAN_00014;F5GYU2_HUMAN_00 014;F5GZQ4_HUMAN_00014;F5H308_HUMAN_00014;F5H5J4_HUMAN_00014;F5H6W8_HUMAN_ 00014;F5GWW2_HUMAN_00014;F5GXC7_HUMAN_00014;F5GXU1_HUMAN_00014;F5H8H6_HU MAN_00014;LDHA_HUMAN_00014;LDHA_HUMAN_00043;LDHA_HUMAN_00014;LDHA_HUMAN_ 5408 LIYNLLKEEQTPQ wildtype peptide L-lactate dehydrogenase A chain 00014 E9PH51_HUMAN_00099;F5GXY2_HUMAN_00126;F5GYU2_HUMAN_00126;F5H308_HUMAN_000 5409 IIPNVVKYSPNCK wildtype peptide L-lactate dehydrogenase A chain 98;LDHA_HUMAN_00126;LDHA_HUMAN_00155;LDHA_HUMAN_00126 F5GXH2_HUMAN_00059;F5GXY2_HUMAN_00059;F5GYU2_HUMAN_00059;F5GZQ4_HUMAN_00 059;F5H5J4_HUMAN_00059;F5H6W8_HUMAN_00059;LDHA_HUMAN_00059;LDHA_HUMAN_000 5410 VIEDKLKGEMMDL wildtype peptide L-lactate dehydrogenase A chain 88;LDHA_HUMAN_00059;LDHA_HUMAN_00059 5411 RNVNVFKFIIPQI wildtype peptide L-lactate dehydrogenase B chain A8MW50_HUMAN_00119;C9J7H8_HUMAN_00119 5412 TQHVYHKYRRRCL wildtype peptide La-related protein 1 5413 VKKIIQKDIIKEA wildtype peptide La-related protein 7 5414 SNAFAEKNGLQKY wildtype peptide Lysocardiolipin acyltransferase 1 A6H8Z7_HUMAN_00183;C9K0C3_HUMAN_00134;LCLT1_HUMAN_00221 5415 KKAKAGKLKDKSK wildtype peptide M-phase phosphoprotein 8 F5H8H9_HUMAN_00177;MPP8_HUMAN_00177 5416 QNRSYSKLLCGLL wildtype peptide Macrophage migration inhibitory factor F5H098_HUMAN_00121;C9JF79_HUMAN_00121;C9JLV6_HUMAN_00104;C9JRL4_HUMAN_0005 5417 ERKDLLKANVKIF wildtype peptide Malate dehydrogenase, cytoplasmic 8;MDHC_HUMAN_00014 5418 TAEVFKKHGVYNP wildtype peptide Malate dehydrogenase, mitochondrial 5419 GKKGIEKNLGIGK wildtype peptide Malate dehydrogenase, mitochondrial E9PDB2_HUMAN_00259;G3XAL0_HUMAN_00194 5420 GFEEVIKKFPRCA wildtype peptide Mitochondrial import receptor subunit TOM70

B8ZZQ7_HUMAN_00407;B9A067_HUMAN_00459;C9J406_HUMAN_00407;F5GZ32_HUMAN_0049 5421 VQEQELKSEFEQN wildtype peptide Mitochondrial inner membrane protein 5;F8W9I1_HUMAN_00474;H7C463_HUMAN_00361;IMMT_HUMAN_00495;IMMT_HUMAN_00474 5422 EKHFFHKVSERLS wildtype peptide Mitofusin-2 5423 YLHTKGKMHRDIK wildtype peptide Mitogen-activated protein kinase kinase kinase kinase 5 B4E049_HUMAN_00309;B1AMS2_HUMAN_00367;E7ETH8_HUMAN_00397;F5H1J5_HUMAN_003 5424 EKELHEKFDRLKK wildtype peptide Septin-6 97;SEPT6_HUMAN_00367;SEPT6_HUMAN_00367 5425 LFDQVVKTIGLRE wildtype peptide Ezrin 5426 RTELADKVTKLQV wildtype peptide Myosin-9 5427 KVAAYDKLEKTKT wildtype peptide Myosin-9 5428 ACNLEKKQKKFDQ wildtype peptide Myosin-9 5429 VKDYVAKGEDVNR wildtype peptide Myotrophin C9J5D1_HUMAN_00034;C9J5J3_HUMAN_00033;C9JZU6_HUMAN_00033;E7EQ69_HUMAN_0003 5430 PVSYNDKFYKDVL wildtype peptide N-alpha-acetyltransferase 50 3;F8WCK0_HUMAN_00034 Acetylome - Acetyltransferase Microarray page 152 of 167

Sequence PEP_FLAG Protein name Uniprot IDs B0AZT5_HUMAN_00078;C9J5D1_HUMAN_00112;E7EQ69_HUMAN_00151;F8WB80_HUMAN_000 5431 DAHVLQKNLKVPS wildtype peptide N-alpha-acetyltransferase 50 64;NAA50_HUMAN_00064 5432 KTDQAQKAEGAGD wildtype peptide Non-histone chromosomal protein HMG-17

5433 KTFNLEKQNHTPR wildtype peptide Non-POU domain-containing octamer-binding protein C9IZL7_HUMAN_00011;C9J4X2_HUMAN_00011;C9JJ13_HUMAN_00011;C9JYS8_HUMAN_00011 5434 DLKNFRKPGEKTF wildtype peptide Non-POU domain-containing octamer-binding protein C9IZL7_HUMAN_00064;C9J4X2_HUMAN_00064;C9JYS8_HUMAN_00064 B4DHP6_HUMAN_00051;E9PLD1_HUMAN_00132;H0YCB0_HUMAN_00107;A6NM69_HUMAN_00 5435 KGSLGIKFSDRTI wildtype peptide Non-specific lipid-transfer protein 088;C9JC79_HUMAN_00108;NLTP_HUMAN_00088 B4DHP6_HUMAN_00201;E9PLD1_HUMAN_00282;A6NM69_HUMAN_00238;C9JC79_HUMAN_002 5436 VGFDMSKEAARKC wildtype peptide Non-specific lipid-transfer protein 58;NLTP_HUMAN_00238 B4DHP6_HUMAN_00389;A6NM69_HUMAN_00426;C9JC79_HUMAN_00446;E1B6W5_HUMAN_00 5437 KDGPGGKEATWVV wildtype peptide Non-specific lipid-transfer protein 063;H0YF61_HUMAN_00085;NLTP_HUMAN_00066 5438 AKNLPYKVTQDEL wildtype peptide Nucleolin 5439 VTLDWAKPKGEGG wildtype peptide Nucleolin Q9BQ02_HUMAN_00418;E7EX81_HUMAN_00538;H7BY16_HUMAN_00271 5440 GSKVPQKKVKLAA wildtype peptide Nucleophosmin E5RI98_HUMAN_00090;NPM_HUMAN_00154;NPM_HUMAN_00154 5441 KFINYVKNCFRMT wildtype peptide Nucleophosmin 5442 SFNFGKKVDSSVL wildtype peptide Nuclear pore complex protein Nup50 B4E2D3_HUMAN_00026;NUP50_HUMAN_00248 5443 ELHKLLKEAGEAN wildtype peptide Nucleoprotein TPR 5444 SKEYFSKQKZZZZ wildtype peptide Peroxiredoxin-1 5445 EQAEALKAKGVQV wildtype peptide Peroxiredoxin-5, mitochondrial 5446 FASFSAKLZZZZZ wildtype peptide Peroxisomal 2,4-dienoyl-CoA reductase Q4VXZ8_HUMAN_00279;DECR2_HUMAN_00243 5447 RENMLMKYAQVKP wildtype peptide Peroxisomal acyl-coenzyme A oxidase 1 F5GYQ8_HUMAN_00217;F5H0M0_HUMAN_00187;ACOX1_HUMAN_00255 5448 AAKNLQKEVIHRK wildtype peptide Peroxisomal acyl-coenzyme A oxidase 1 F5GYQ8_HUMAN_00466;F5H0M0_HUMAN_00436;ACOX1_HUMAN_00504 5449 GWYQYDKPLGRIH wildtype peptide Peroxisomal bifunctional enzyme 5450 GAAAMEKLSSIKS wildtype peptide Phosphoserine aminotransferase 5451 INIVHPKLGSYTK wildtype peptide Phosphoserine aminotransferase D3DQ69_HUMAN_00185;D3DQ70_HUMAN_00185;PAIRB_HUMAN_00122;PAIRB_HUMAN_00122 5452 QLQGEGKIIDRRP wildtype peptide Plasminogen activator inhibitor 1 RNA-binding protein PAIRB_HUMAN_00122 5453 KSTDVAKTFRKAI wildtype peptide Plastin-2 5454 LGKNQAKFSLVGI wildtype peptide Plastin-2 5455 RVEEGEKEFHVRN wildtype peptide Platelet-activating factor acetylhydrolase 2, cytoplasmic 5456 SSGFSGKGFKFDE wildtype peptide Probable ATP-dependent RNA helicase DDX46 5457 FGNPGEKLVKKKW wildtype peptide Probable ATP-dependent RNA helicase DDX5 5458 RIAHLVKELRKEL wildtype peptide Probable ATP-dependent RNA helicase DHX36 F5GZS0_HUMAN_00933;DHX36_HUMAN_00933;DHX36_HUMAN_00918 5459 IFLNNVKFTHAFS wildtype peptide Probable fructose-2,6-bisphosphatase TIGAR B1ALG1_HUMAN_00197;B1ALF6_HUMAN_00239;B1ALG2_HUMAN_00215;B1ALG5_HUMAN_000 5460 DDKGRDKGKGKKR wildtype peptide Probable global transcription activator SNF2L2 80;F6XG14_HUMAN_00237;SMCA2_HUMAN_01533 5461 VPLIAQKPVGEMK wildtype peptide Probable helicase senataxin SETX_HUMAN_01647;SETX_HUMAN_01647 5462 KKPAKDKSSTRGE wildtype peptide Protein ENL FA22B_HUMAN_00649;FA22D_HUMAN_00577;FA22A_HUMAN_00649;C9J2Y0_HUMAN_00576;E 9PFQ3_HUMAN_00126;F5H6P1_HUMAN_00126;H0Y492_HUMAN_00116;H7BZQ1_HUMAN_0042 5463 LDSSSSKFAAGQG wildtype peptide Protein FAM22E 7;H9KV39_HUMAN_00648 5464 PPGNWKKPSDSLS wildtype peptide Protein FAM83B 5465 KKKRHWKPYYKLT wildtype peptide Protein HEXIM1 5466 GSMYRIKSKIPNE wildtype peptide Protein Jade-3 F2Z2B6_HUMAN_00030;F2Z3N8_HUMAN_00030 5467 KIPNEHKKPAEVF wildtype peptide Protein Jade-3 F2Z2B6_HUMAN_00038;F2Z3N8_HUMAN_00038

5468 SSEITTKDLKEKK wildtype peptide Prothymosin alpha B8ZZA1_HUMAN_00036;B8ZZI3_HUMAN_00015;B8ZZQ6_HUMAN_00015;PTMA_HUMAN_00015 Q573B4_HUMAN_00237;E7EN21_HUMAN_00223;E9PAP0_HUMAN_00223;E9PJ92_HUMAN_001 5469 NQGEVVKHYKIRN wildtype peptide Tyrosine-protein kinase Lck 79;LCK_HUMAN_00179;LCK_HUMAN_00179 Acetylome - Acetyltransferase Microarray page 153 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5470 TFRLSAKSGELLL wildtype peptide Protocadherin beta-2 PUM2_HUMAN_00672;B4DG92_HUMAN_00735;B4E2B6_HUMAN_00616;Q5T1Z4_HUMAN_00795 ;Q5T1Z8_HUMAN_00830;E7EWT3_HUMAN_00650;E9PCJ0_HUMAN_00794;E9PR38_HUMAN_00 552;F8WBG3_HUMAN_00532;H0YDK8_HUMAN_00506;H0YEH2_HUMAN_00733;PUM1_HUMAN_ 5471 APGAEAKYRSASS wildtype peptide Pumilio homolog 1 00768;PUM2_HUMAN_00593;PUM2_HUMAN_00672 5472 NLYNFSKLKKSRK wildtype peptide DNA helicase INO80 5473 RLDLNRKEVLTLR wildtype peptide Putative helicase MOV-10 Q5JR04_HUMAN_00092;Q9H8T8_HUMAN_00148;MOV10_HUMAN_00148 5474 TLKNWVKELRQHG wildtype peptide Ras-related protein Rab-22A

5475 KMAKGAKEIDIAA wildtype peptide Receptor-type tyrosine-protein phosphatase N2 E7EM83_HUMAN_00932;E9PC57_HUMAN_00953;PTPR2_HUMAN_00941;PTPR2_HUMAN_00993 PTBP1_HUMAN_00528;PTBP2_HUMAN_00528;B4DSI2_HUMAN_00201;B4DSS8_HUMAN_00545; A6NLN1_HUMAN_00194;B1ALY6_HUMAN_00454;PTBP3_HUMAN_00518;PTBP3_HUMAN_00555 ;PTBP3_HUMAN_00552;PTBP3_HUMAN_00521;PTBP1_HUMAN_00547;PTBP1_HUMAN_00554;P 5476 LRVSFSKSTIZZZ wildtype peptide Polypyrimidine tract-binding protein 3 TBP2_HUMAN_00529;PTBP2_HUMAN_00534;PTBP2_HUMAN_00533 5477 ITGHRGKDISTIL wildtype peptide Remodeling and spacing factor 1 H0YDG9_HUMAN_00170;RSF1_HUMAN_01030;RSF1_HUMAN_00809 5478 NIFRVCKTFQMAE wildtype peptide Replication factor C subunit 2 H7C5P4_HUMAN_00160;RFC2_HUMAN_00270 5479 KAYGASKTFGKAA wildtype peptide Replication protein A 70 kDa DNA-binding subunit 5480 TDLFIGKKPIELR wildtype peptide Rotatin C9JTR3_HUMAN_00811;RTTN_HUMAN_00811;RTTN_HUMAN_00811 A8MZI9_HUMAN_00058;C9JK12_HUMAN_00046;C9JW25_HUMAN_00046;C9JWM1_HUMAN_000 57;F5H139_HUMAN_00046;H9KVB1_HUMAN_00043;RUNX1_HUMAN_00058;RUNX1_HUMAN_00 043;RUNX1_HUMAN_00043;RUNX1_HUMAN_00043;RUNX1_HUMAN_00043;RUNX1_HUMAN_00 5481 GAALAGKLRSGDR wildtype peptide Runt-related transcription factor 1 043;RUNX1_HUMAN_00043;RUNX1_HUMAN_00070;RUNX1_HUMAN_00046 5482 AAVDYQKVVREAV wildtype peptide S-adenosylmethionine synthase isoform type-2 5483 GISSYTKLKGCKV wildtype peptide Sacsin 5484 GSGSGFKPFKGGP wildtype peptide SAFB-like transcription modulator A8K5V8_HUMAN_00593;H0YKH2_HUMAN_00090;H7C3F4_HUMAN_00590 H7C5W9_HUMAN_00355;AT2A2_HUMAN_00464;AT2A2_HUMAN_00464;AT2A2_HUMAN_00437; 5485 ELKGLSKIERANA wildtype peptide Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 AT2A2_HUMAN_00464 Short/branched chain specific acyl-CoA dehydrogenase, 5486 QIGHGYKYAIGSL wildtype peptide mitochondrial B1AMV7_HUMAN_00081;E9PGB5_HUMAN_00188;F2Z386_HUMAN_00011;H7BYJ7_HUMAN_000 5487 LTGPWIKRLLPVI wildtype peptide Sideroflexin-4 80;SFXN4_HUMAN_00188;SFXN4_HUMAN_00081 B3KUU5_HUMAN_00113;Q96K98_HUMAN_00192;E7ETK6_HUMAN_00421;F5H5Y3_HUMAN_003 5488 EDKAFQKEIGLKT wildtype peptide Signal recognition particle 68 kDa protein 51;G3V1U4_HUMAN_00414;SRP68_HUMAN_00421 5489 AVDGYVKPQIKQV wildtype peptide Signal transducer and activator of transcription 5A STA5B_HUMAN_00701;Q1KLZ6_HUMAN_00666;Q59GY7_HUMAN_00667 5490 AYQYVKKGSRIYL wildtype peptide Single-stranded DNA-binding protein, mitochondrial C9K0U8_HUMAN_00104;E7EUY5_HUMAN_00104 5491 KNDDLNKPINKGR wildtype peptide Sister chromatid cohesion protein PDS5 homolog A 5492 KTEGWSKNFKLLQ wildtype peptide Splicing factor 45 Q5W010_HUMAN_00021;Q5W011_HUMAN_00021;E9PDG1_HUMAN_00021 5493 RKLDNTKFRSHEG wildtype peptide Serine/arginine-rich splicing factor 1 5494 IEKLSGKEINGRK wildtype peptide Serine/arginine-rich splicing factor 5 5495 RLEELMKPLKVVD wildtype peptide Splicing factor, suppressor of white-apricot homolog F5H525_HUMAN_00252;F5H5X1_HUMAN_00108;F5H6B8_HUMAN_00315 5496 KNPMYQKERETPP wildtype peptide Splicing factor, proline- and glutamine-rich H0Y9K7_HUMAN_00026;SFPQ_HUMAN_00472 5497 SHGYGGKFGVEQD wildtype peptide Src substrate cortactin H7C314_HUMAN_00069;SRC8_HUMAN_00087;SRC8_HUMAN_00087 5498 AADQITKLYNLFL wildtype peptide Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial E9PDQ8_HUMAN_00227;SUCB2_HUMAN_00227 5499 HTDDDEKISYRYL wildtype peptide Sulfide:quinone oxidoreductase, mitochondrial H3BMS6_HUMAN_00083;H3BNX3_HUMAN_00135;H3BV36_HUMAN_00135 5500 YLLTMDKLWRKRK wildtype peptide SUMO-activating enzyme subunit 2 B3KWB9_HUMAN_00175;F5H4L5_HUMAN_00144 5501 GKRFDGKLQSEST wildtype peptide Superkiller viralicidic activity 2-like 2 5502 LKKVIQKVEAFEH wildtype peptide Superkiller viralicidic activity 2-like 2 5503 TLVVHEKADDLGK wildtype peptide Superoxide dismutase [Cu-Zn] 5504 ALLQAIKARNIRL wildtype peptide Tetratricopeptide repeat protein 4 5505 YFPLLKKCHVPET wildtype peptide Thimet oligopeptidase Acetylome - Acetyltransferase Microarray page 154 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5506 EFSGANKEKLEAT wildtype peptide Thioredoxin D3YTF8_HUMAN_00130;D3YTF9_HUMAN_00152;E7ENA2_HUMAN_00123;F5H1L4_HUMAN_001 23;F5H2M2_HUMAN_00153;F5H2V0_HUMAN_00152;E7EWK1_HUMAN_00153;F6WBI2_HUMAN_ 5507 LQDRKVKYFNIKA wildtype peptide Thioredoxin reductase 2, mitochondrial 00057;TRXR2_HUMAN_00127;TRXR2_HUMAN_00057 5508 RALVSTKWLAESI wildtype peptide Thiosulfate sulfurtransferase B1AH48_HUMAN_00014;E7EN05_HUMAN_00014 5509 AHHISSKYDELKK wildtype peptide THO complex subunit 2 A6NIY7_HUMAN_00281;F8W6T6_HUMAN_00256;F8W9R0_HUMAN_00281;H0Y5S0_HUMAN_000 5510 RENGLDKTRLLKK wildtype peptide Transducin-like enhancer protein 4 14;H7C4E4_HUMAN_00072;TLE4_HUMAN_00281 5511 IVDCFQKIRQQVK wildtype peptide Transformation/transcription domain-associated protein F2Z2U4_HUMAN_03048;H0Y4W2_HUMAN_02789;TRRAP_HUMAN_03049 5512 VQQKIEKQYDADL wildtype peptide Transgelin-2 B3KSI4_HUMAN_00011;E7EPA7_HUMAN_00011;E9PFF2_HUMAN_00011;F8W888_HUMAN_000 5513 HKPDQQKLQALKD wildtype peptide Transketolase 11;F8WAX4_HUMAN_00011 B3KSI4_HUMAN_00158;B4E022_HUMAN_00194;E7EPA7_HUMAN_00249;E9PFF2_HUMAN_0024 5514 PTAIIAKTFKGRG wildtype peptide Transketolase 1 5515 KPAELLKMFGIDR wildtype peptide Transketolase B3KSI4_HUMAN_00520;B4E022_HUMAN_00556;E7EPA7_HUMAN_00611 5516 NEATGGKYVPRAV wildtype peptide Tubulin beta-4B chain 5517 LLTLKIKYPHQLD wildtype peptide Tubulin-specific chaperone E 5518 HATEELKEFFAKA wildtype peptide Twinfilin-2 5519 VAIKVIKSANMKL wildtype peptide Tyrosine-protein kinase Srms 5520 LVEHYKKNPMVET wildtype peptide Tyrosine-protein phosphatase non-receptor type 11 H0YF12_HUMAN_00044;PTN11_HUMAN_00199;PTN11_HUMAN_00199 5521 IFTFAEKYLPALG wildtype peptide Tyrosine--tRNA ligase, cytoplasmic UD16_HUMAN_00352;UD11_HUMAN_00353;UD14_HUMAN_00354;UD13_HUMAN_00354;UD17_ HUMAN_00350;UD18_HUMAN_00350;A6NJC3_HUMAN_00353;B8K288_HUMAN_00354;UD15_H UMAN_00354;Q7Z6H8_HUMAN_00350;UD110_HUMAN_00350;A6NKK6_HUMAN_00085;B5MCT4 5522 NNTILVKWLPQND wildtype peptide UDP-glucuronosyltransferase 1-9 _HUMAN_00085;E7ETV7_HUMAN_00351 5523 LLKDLYKCSEKDS wildtype peptide Protein unc-45 homolog A 5524 DEVLTSKGDAWAK wildtype peptide Uncharacterized protein C19orf43 5525 QKATLAKDPPHAR wildtype peptide Putative uncharacterized protein C1orf140 5526 SLWEQSKWHRRNS wildtype peptide KAT8 regulatory NSL complex subunit 1-like protein 5527 ALPKAGKFGPARK wildtype peptide Protein MB21D1 A6PW79_HUMAN_00050;M21D1_HUMAN_00050 5528 IQQLFGKIKDIKD wildtype peptide Vacuolar protein sorting-associated protein 53 homolog F6VX93_HUMAN_00110;VPS53_HUMAN_00110;VPS53_HUMAN_00110 5529 DAVDLMKALKFKK wildtype peptide Valacyclovir hydrolase B4DML3_HUMAN_00126;Q49AI2_HUMAN_00109;BPHL_HUMAN_00109 5530 AVLVALKERGLFR wildtype peptide Valine--tRNA ligase B0V043_HUMAN_00645;H0Y4A6_HUMAN_00564;E7EVJ6_HUMAN_00057 5531 VTSWPGKQVETLR wildtype peptide Vascular endothelial zinc finger 1

5532 VPSPCGKYYTLNG wildtype peptide Very long-chain specific acyl-CoA dehydrogenase, mitochondrial F5H2A9_HUMAN_00262;G3V1M7_HUMAN_00285;ACADV_HUMAN_00217 5533 QYQSQAKQLFRKL wildtype peptide Vesicle-trafficking protein SEC22b 5534 KAPFQNKQLKPKQ wildtype peptide Zinc finger RNA-binding protein 5535 EKHEWEKILQKVL wildtype peptide Zinc finger ZZ-type and EF-hand domain-containing protein 1 5536 RQHPLNKHLFKPS wildtype peptide ZZ-type zinc finger-containing protein 3 ZZZ3_HUMAN_00737;ZZZ3_HUMAN_00244 5537 ZZZZMVKVKAGVN wildtype peptide Uncharacterized protein ENSP00000381431 5538 VPKQEVKTFSLLP wildtype peptide NONE 5539 KTQTKGKRGAKGK wildtype peptide Uncharacterized protein ENSP00000369749 5540 ELNTKVKEKFQQL wildtype peptide Vesicle transport protein SEC20 SEC20_HUMAN_00048;SEC20_HUMAN_00048;SEC20_HUMAN_00048 5541 VPKLDLKRQYDRV wildtype peptide Secretogranin-1 5542 QASGNVKKALKLM wildtype peptide Collagen alpha-1(III) chain E7ENY8_HUMAN_01084;CO3A1_HUMAN_01084 5543 AEDEEWKRIRSLL wildtype peptide Cytochrome P450 3A5 CP3A7_HUMAN_00127;E7ENM5_HUMAN_00127;F5H4S0_HUMAN_00117 5544 PTGTFEKEMIGRI wildtype peptide 2,4-dienoyl-CoA reductase, mitochondrial 5545 EQEKIDKLMIEMD wildtype peptide Alpha-enolase 5546 NHYQVVKDGLNQK wildtype peptide Solute carrier family 15 member 1 Acetylome - Acetyltransferase Microarray page 155 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5547 IKRISTKEWAKST wildtype peptide SUMO-activating enzyme subunit 2 B3KWB9_HUMAN_00145;F5H4L5_HUMAN_00114 5548 EKILADKEVKRPQ wildtype peptide Brefeldin A-inhibited guanine nucleotide-exchange protein 2 5549 TAMRITKWKEKVQ wildtype peptide Tripartite motif-containing protein 38 5550 MKMMLDKKQIRAI wildtype peptide Histone-lysine N-methyltransferase SETMAR B9ZVV8_HUMAN_00112;E7EN68_HUMAN_00209 5551 VVNGEFKDLSLDD wildtype peptide Thioredoxin-dependent peroxide reductase, mitochondria 5552 DVAHSVKEKFGKK wildtype peptide Glycogen [starch] synthase, liver 5553 HVEKLTKGAAIFF wildtype peptide Axin interactor, dorsalization-associated protein F5H715_HUMAN_00211;AIDA_HUMAN_00070 5554 FYIEKEKPLLIFE wildtype peptide RNA polymerase II-associated protein 3 5555 AEDEEWKRLRSLL wildtype peptide Cytochrome P450 3A4 5556 VAYDEAKERASFI wildtype peptide C-1-tetrahydrofolate synthase, cytoplasmic F5H2F4_HUMAN_00318;G3V2B8_HUMAN_00262;G3V3L6_HUMAN_00242 5557 LEKIQTKAGEATV wildtype peptide 39S ribosomal protein L9, mitochondrial 5558 KKEKEQKEEPLRE wildtype peptide Protein SPATIAL 5559 SAFRMAKAQKQFR wildtype peptide Abnormal spindle-like microcephaly-associated protein 5560 SMPTEKKISSASD wildtype peptide Inactive phospholipase C-like protein 2 5561 IITADPKKELENL wildtype peptide KIF1-binding protein 5562 KIKTLQKEREDKE wildtype peptide Protein CIP2A B4DX73_HUMAN_00575;ODFP2_HUMAN_00509;ODFP2_HUMAN_00551;ODFP2_HUMAN_00570 ODFP2_HUMAN_00556;ODFP2_HUMAN_00575;ODFP2_HUMAN_00619;ODFP2_HUMAN_00556; 5563 KENKILKDEMNKE wildtype peptide Outer dense fiber protein 2 ODFP2_HUMAN_00494 5564 LELSASKKKZZZZ wildtype peptide ERC protein 2 C9K0F5_HUMAN_00547;D3DP10_HUMAN_00400;H0Y2M0_HUMAN_00409;T131L_HUMAN_0017 5565 KLYERWKKYKNGD wildtype peptide Transmembrane protein 131-like 7;T131L_HUMAN_00548;T131L_HUMAN_00548 5566 ECKQCGKTFIYYQ wildtype peptide Zinc finger protein 14 5567 TVEWDWKLLTYVM wildtype peptide Uncharacterized protein C5orf25 B4DRM7_HUMAN_00569;CE025_HUMAN_00135 5568 QFDDNLKFKNIIN wildtype peptide Remodeling and spacing factor 1 H0YER1_HUMAN_00135;H7C306_HUMAN_00103;RSF1_HUMAN_00105 5569 DMMVLDKQKGLKS wildtype peptide Ras GTPase-activating-like protein IQGAP3 5570 PEEQSKKGPSVQK wildtype peptide Protein lin-28 homolog B 5571 NKKKKEKERCTAL wildtype peptide THO complex subunit 2 5572 QYKDVAKPVIELY wildtype peptide Adenylate kinase isoenzyme 4, mitochondrial ZN429_HUMAN_00258;ZN540_HUMAN_00524;ZN665_HUMAN_00226;ZN879_HUMAN_00541;B4 DX96_HUMAN_00392;B7Z586_HUMAN_00297;B7Z5P9_HUMAN_00442;ZN197_HUMAN_00455;Z NF14_HUMAN_00280;ZN708_HUMAN_00505;ZNF25_HUMAN_00287;ZNF85_HUMAN_00287;ZN1 17_HUMAN_00166;ZNF91_HUMAN_00351;ZN616_HUMAN_00522;ZN699_HUMAN_00392;ZN791_ HUMAN_00329;ZN766_HUMAN_00244;ZN678_HUMAN_00378;ZN660_HUMAN_00079;ZNP12_HU MAN_00236;ZN571_HUMAN_00420;ZN546_HUMAN_00778;ZN227_HUMAN_00493;ZN573_HUMA N_00255;ZN595_HUMAN_00285;ZN679_HUMAN_00353;ZN808_HUMAN_00288;ZN283_HUMAN_0 0348;ZN491_HUMAN_00216;ZN441_HUMAN_00644;ZN709_HUMAN_00225;ZN555_HUMAN_0025 7;ZN502_HUMAN_00380;ZN721_HUMAN_00238;ZN486_HUMAN_00435;ZN560_HUMAN_00741;Z N607_HUMAN_00422;ZN107_HUMAN_00357;ZSC21_HUMAN_00417;Z780B_HUMAN_00194;A8M XY6_HUMAN_00311;B1AKS7_HUMAN_00251;C9JIN0_HUMAN_00256;C9JTJ1_HUMAN_00046;D9 N162_HUMAN_00250;F5GXA7_HUMAN_00433;F5GXD7_HUMAN_00220;F5GYB6_HUMAN_00197 ;F5H141_HUMAN_00421;F5H2C5_HUMAN_00162;G3XAE0_HUMAN_00259;H0Y3E1_HUMAN_001 94;H0YGI2_HUMAN_00474;H7BYI1_HUMAN_00387;H7C3X1_HUMAN_00187;ZN724_HUMAN_004 5573 TGEKPYKCKECGK wildtype peptide Zinc finger protein 267 51;ZNF25_HUMAN_00193;ZNF85_HUMAN_00254;ZNF91_HUMAN_00319;ZN573_HUMAN_00187;Z 5574 LQLFGTKGVKRVL wildtype peptide Tripartite motif-containing protein 47 5575 QKREVTKEEYKDI wildtype peptide PHD and RING finger domain-containing protein 1 E9PJ24_HUMAN_01585;F8WEF5_HUMAN_01587;PHRF1_HUMAN_01588 5576 LQYLYEKLATGES wildtype peptide Protein artemis B3KSJ7_HUMAN_00326;DCR1C_HUMAN_00553;DCR1C_HUMAN_00558 5577 QEVQKAKEADIEK wildtype peptide Sperm-associated antigen 5 5578 ALVGAEKRMATEK wildtype peptide Protein L-Myc-1 5579 IQAAAGKGRKNSR wildtype peptide SH2 domain-containing adapter protein E Acetylome - Acetyltransferase Microarray page 156 of 167

Sequence PEP_FLAG Protein name Uniprot IDs CYTSA_HUMAN_01019;A8MV89_HUMAN_00970;F5H1H6_HUMAN_01019;F5H2Z1_HUMAN_0031 5580 KRNALLKWCQKKT wildtype peptide Cytospin-B 0;H7C4S0_HUMAN_00034;CYTSB_HUMAN_00889 B5MCT2_HUMAN_00130;E9PHB1_HUMAN_00076;F5GXR2_HUMAN_00058;C9J4P4_HUMAN_00 116;C9JX69_HUMAN_00058;F8WEH6_HUMAN_00116;ETV1_HUMAN_00098;ETV1_HUMAN_0011 5581 KFSYGEKCLYNVS wildtype peptide ETS translocation variant 1 6 5582 PSEGPAKVEEEAA wildtype peptide Leiomodin-1 F5H649_HUMAN_00257;LMOD1_HUMAN_00280 5583 KRGAKGKQAEVAN wildtype peptide Non-histone chromosomal protein HMG-14 A6NEL0_HUMAN_00077;A6NL93_HUMAN_00051 5584 QKDQKQKSALDEA wildtype peptide Ankyrin repeat domain-containing protein 31 5585 LLDAYLKTRTPSL wildtype peptide cDNA FLJ59991, highly similar to Elongation factor 1-gamma 5586 LAQAYVKITQDDR wildtype peptide WD repeat-containing protein 87 E7ESW6_HUMAN_01661;WDR87_HUMAN_01661 5587 IQQFSKKEIEDLL wildtype peptide Chromodomain-helicase-DNA-binding protein 8 H0YJG4_HUMAN_00527;H7BXG5_HUMAN_01021;CHD8_HUMAN_01022 5588 NISAKEKEEEERE wildtype peptide Fibrous sheath-interacting protein 2 5589 FLHHVKKSDPERG wildtype peptide Ankyrin repeat and LEM domain-containing protein 2 F5H2H5_HUMAN_00493;F5H6J0_HUMAN_00118;ANKL2_HUMAN_00555

C1KBH7_HUMAN_00173;E7EU09_HUMAN_00081;E9PKF2_HUMAN_00081;E9PKV7_HUMAN_000 83;E9PN14_HUMAN_00012;E9PNM3_HUMAN_00172;FGFR1_HUMAN_00083;FGFR1_HUMAN_00 083;FGFR1_HUMAN_00012;FGFR1_HUMAN_00012;FGFR1_HUMAN_00081;FGFR1_HUMAN_000 83;FGFR1_HUMAN_00081;FGFR1_HUMAN_00173;FGFR1_HUMAN_00172;FGFR1_HUMAN_0016 4;FGFR1_HUMAN_00203;FGFR1_HUMAN_00083;FGFR1_HUMAN_00083;FGFR1_HUMAN_00012 5590 HAVPAAKTVKFKC wildtype peptide Fibroblast growth factor receptor 1 ;FGFR1_HUMAN_00012;FGFR1_HUMAN_00170;FGFR1_HUMAN_00172;FGFR1_HUMAN_00172 5591 LAWYQQKPEKAPK wildtype peptide Ig kappa chain V-I region Kue 5592 EELGKAKPTTRPT wildtype peptide Fibroblast growth factor-binding protein 2 5593 DNRDLTKQVTVHA wildtype peptide Protein Daple 5594 VKELEEKIENLEK wildtype peptide GRIP and coiled-coil domain-containing protein 2 5595 RTHTGSKPFKCKI wildtype peptide Zinc finger protein 407 ZN407_HUMAN_01565;ZN407_HUMAN_01565 5596 RDVGSQKMEEZZZ wildtype peptide Myosin-13 5597 DHLNVTKKWSZZZ wildtype peptide Ribosomal protein 63, mitochondrial 5598 TGSNSEKFSKTKK wildtype peptide RE1-silencing transcription factor F8WAN5_HUMAN_00489;REST_HUMAN_00489 5599 DINNELKKLAZZZ wildtype peptide Peptidyl-prolyl cis-trans isomerase FKBP6 C9JM01_HUMAN_00249;G3V0I2_HUMAN_00264;FKBP6_HUMAN_00289 5600 MPEGDIKALTTLC wildtype peptide Steroid hormone receptor ERR2 E7EWD9_HUMAN_00243;ERR2_HUMAN_00238;ERR2_HUMAN_00238 5601 EEEDVDKLEIRVD wildtype peptide Ras GTPase-activating protein 3 5602 ANADITKDQSETQ wildtype peptide Dynein heavy chain 7, axonemal 5603 SDILNEKKYRQHP wildtype peptide Nebulin F8WCL5_HUMAN_00982;F8WCP0_HUMAN_00982 Putative polypeptide N-acetylgalactosaminyltransferase-like protein 5604 CLVDNSKSRLPQL wildtype peptide 3 5605 ECDCKAKWLYLWL wildtype peptide Leucine-rich repeat LGI family member 2 C9J810_HUMAN_00254;E9PB18_HUMAN_00254;K1324_HUMAN_00254;K1324_HUMAN_00254;K 5606 AFSVWTKVPKPVL wildtype peptide UPF0577 protein KIAA1324 1324_HUMAN_00254 5607 SSDSDGKLEKAIA wildtype peptide Sentan C9JRU3_HUMAN_00076;C9JXY5_HUMAN_00072 5608 SKPTANKKCDLIS wildtype peptide Coronin-1C A7MAP0_HUMAN_00424;B4E3S0_HUMAN_00313;H0YHL7_HUMAN_00109 5609 ILGNLRKNKAGVV wildtype peptide Probable polyprenol reductase 5610 KSSRGLKIYAMEI wildtype peptide Adipocyte enhancer-binding protein 1 H7C391_HUMAN_00038;H7C4B5_HUMAN_00026;AEBP1_HUMAN_00173 5611 QLQTQAKLVLEEN wildtype peptide Centrosomal protein of 89 kDa 5612 IGYLDYKKERIRK wildtype peptide Glycosyltransferase 8 domain-containing protein 1 5613 NMDREAKEEYHVV wildtype peptide Cadherin-11 F5H2W2_HUMAN_00212;H3BUU9_HUMAN_00103;CAD11_HUMAN_00229 5614 GHDTFKKPVLWSH wildtype peptide Putative uncharacterized protein encoded by LINC00341 5615 EEKQELKEKLKET wildtype peptide MORC family CW-type zinc finger protein 4 A1YR24_HUMAN_00605;H7BXF1_HUMAN_00857 5616 ENLTLGKKAELQV wildtype peptide POM121-like protein 2 5617 ECSECGKGFYLEV wildtype peptide Zinc finger protein 549 5618 EGLLDCKRVVQIG wildtype peptide Agmatinase, mitochondrial Acetylome - Acetyltransferase Microarray page 157 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5619 PVIELYKSRGVLH wildtype peptide Adenylate kinase isoenzyme 4, mitochondrial Q8IUK7_HUMAN_00286;A6NBZ8_HUMAN_00499;B7WNR0_HUMAN_00384;C9JKR2_HUMAN_00 307;D6RHD5_HUMAN_00349;E7ESU5_HUMAN_00508;H0YA55_HUMAN_00344;ALBU_HUMAN_0 5620 VSDRVTKCCTESL wildtype peptide Serum albumin 0307 B1AQT2_HUMAN_00262;E7EMJ1_HUMAN_00763;E9PE32_HUMAN_01129;F5GXK0_HUMAN_003 63;F5H4S1_HUMAN_00763;F8W854_HUMAN_00262;H0Y3N0_HUMAN_01108;H0Y9E9_HUMAN_ 5621 ICRIITKDFPQYF wildtype peptide Ankyrin-3 00186;H0YF76_HUMAN_00261;H0YH59_HUMAN_00661 5622 KVTYLGKELLRYV wildtype peptide Ankyrin repeat domain-containing protein 31 (Fragment) E7EMM2_HUMAN_00567;G5E988_HUMAN_00645;AP3D1_HUMAN_00645;AP3D1_HUMAN_0056 5623 ERRHRQKLEKDKR wildtype peptide AP-3 complex subunit delta-1 7;AP3D1_HUMAN_00736;AP3D1_HUMAN_00736 5624 DFLPPKKIKDPDA wildtype peptide Calreticulin 5625 YCKFHYKTDQGIK wildtype peptide Catalase 5626 KVEYLLKWKGFSD wildtype peptide Chromobox protein homolog 1 B5MD17_HUMAN_00041;C9JWS9_HUMAN_00041;E9PCS5_HUMAN_00041 5627 EEFVVEKVLDRRV wildtype peptide Chromobox protein homolog 3 B8ZZ43_HUMAN_00034;C9JMM0_HUMAN_00034 5628 SESNKRKSNFSNS wildtype peptide Chromobox protein homolog 5 5629 QAEMDLKRLRDPL wildtype peptide Calcium uniporter protein, mitochondrial MCU_HUMAN_00311;MCU_HUMAN_00283 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, 5630 RRLCEHKYGNAPR wildtype peptide mitochondrial Q96G95_HUMAN_00245;A8MY43_HUMAN_00245 5631 NEGGIDKFSRGYE wildtype peptide 1,4-alpha-glucan-branching enzyme 5632 DGDILGKYVDZZZ wildtype peptide 10 kDa heat shock protein, mitochondrial 5633 ISSIEQKEENKGG wildtype peptide 14-3-3 protein epsilon 5634 ZZZZMEKTELIQK wildtype peptide 14-3-3 protein theta B4DMT8_HUMAN_00007;E9PG15_HUMAN_00007

5635 SKVFYLKMKGDYF wildtype peptide 14-3-3 protein theta 1433B_HUMAN_00122;B4DMT8_HUMAN_00085;E9PG15_HUMAN_00120;1433B_HUMAN_00120 5636 PVLLLGKERFAGV wildtype peptide 40S ribosomal protein S16 5637 KDVKDGKYSQVLA wildtype peptide 40S ribosomal protein S18 5638 QALEGLKMVEKDQ wildtype peptide 40S ribosomal protein S19 5639 SLLALYKGKKERP wildtype peptide 40S ribosomal protein S23 5640 TYDKLCKEVPNYK wildtype peptide 40S ribosomal protein S25 5641 APRPPPKPMZZZZ wildtype peptide 40S ribosomal protein S26 5642 ASESLIKQIPRIL wildtype peptide 60S ribosomal protein L10a 5643 KATGDWKGLRITV wildtype peptide 60S ribosomal protein L12 5644 VEKKIDKYTEVLK wildtype peptide 60S ribosomal protein L13a Q642I1_HUMAN_00083;E7ENU7_HUMAN_00083;E7EQV9_HUMAN_00083;E7EX53_HUMAN_000 5645 KGATYGKPVHHGV wildtype peptide 60S ribosomal protein L15 83 5646 RHMGIGKRKGTAN wildtype peptide 60S ribosomal protein L19 5647 RTRRAVKFQRAIT wildtype peptide 60S ribosomal protein L24 C9JNW5_HUMAN_00077;C9JXB8_HUMAN_00077 B4DEC3_HUMAN_00326;B4DW08_HUMAN_00316;A2A274_HUMAN_00630;F5H2A5_HUMAN_005 5648 AAGPWLKFRGHLD wildtype peptide Aconitate hydratase, mitochondrial 86 5649 RLERELKQLYLER wildtype peptide Actin-related protein 2 E9PF41_HUMAN_00327;F5H6T1_HUMAN_00267;G3V1L8_HUMAN_00267 5650 MKTITGKTFSSRZ wildtype peptide Actin-related protein 2/3 complex subunit 2 C9JWM7_HUMAN_00108;E7ETI0_HUMAN_00089;F8WCF6_HUMAN_00089;F8WDD7_HUMAN_00 5651 EKILCHKFMRFMM wildtype peptide Actin-related protein 2/3 complex subunit 4 089 5652 DGSKWIKQYTGIN wildtype peptide Actin-related protein 3 B4DTI0_HUMAN_00125;B4DXW1_HUMAN_00203;F5H3P5_HUMAN_00192 Acetylome - Acetyltransferase Microarray page 158 of 167

Sequence PEP_FLAG Protein name Uniprot IDs

ACTA_HUMAN_00063;ACTG_HUMAN_00061;ACTH_HUMAN_00062;ACTC_HUMAN_00063;ACTS _HUMAN_00063;B4DUI8_HUMAN_00018;B4E335_HUMAN_00061;Q5T8M7_HUMAN_00063;Q5T8 M8_HUMAN_00063;A6NL76_HUMAN_00063;B8ZZJ2_HUMAN_00062;C9JFL5_HUMAN_00062;C9J TX5_HUMAN_00061;C9JUM1_HUMAN_00064;C9JZR7_HUMAN_00061;E7EQV5_HUMAN_00063; E7EVS6_HUMAN_00061;F5H0N0_HUMAN_00061;F5H1C1_HUMAN_00063;F6QUT6_HUMAN_000 5653 GDEAQSKRGILTL wildtype peptide Actin, cytoplasmic 1 63;F6UVQ4_HUMAN_00063;F8WB63_HUMAN_00062;G5E9R0_HUMAN_00061 5654 SDSINQKHFEQAI wildtype peptide AFG3-like protein 2 5655 ELMHSGKSIRTVV wildtype peptide Alcohol dehydrogenase class-3 A8MYB8_HUMAN_00194;C9JKT2_HUMAN_00194;C9JMC5_HUMAN_00194;E7ERM4_HUMAN_00 5656 GSTGVGKIIMTAA wildtype peptide Aldehyde dehydrogenase, dimeric NADP-preferring 121;E9PNN6_HUMAN_00194;H0Y3F3_HUMAN_00252 5657 IQEKAVKREDLFI wildtype peptide Aldo-keto reductase family 1 member B10 5658 NVIVIPKSVTPAR wildtype peptide Aldo-keto reductase family 1 member B10 AK1C3_HUMAN_00179;AK1C2_HUMAN_00179;AK1C1_HUMAN_00179;B4DK69_HUMAN_00153; 5659 LEMILNKPGLKYK wildtype peptide Aldo-keto reductase family 1 member C4 A6NHU4_HUMAN_00181;B5ME26_HUMAN_00120;H0Y804_HUMAN_00146 B3KRQ1_HUMAN_00031;H0YKS4_HUMAN_00148;H0YL33_HUMAN_00031;H0YM50_HUMAN_00 117;H0YMD0_HUMAN_00148;H0YMU9_HUMAN_00148;H0YN28_HUMAN_00031;H0YN42_HUMA N_00148;H0YN52_HUMAN_00031;H0YNA0_HUMAN_00031;H0YNP5_HUMAN_00083;H0YLE2_HU 5660 EINRVYKEMYKTD wildtype peptide Annexin A2 MAN_00031;AXA2L_HUMAN_00148;ANXA2_HUMAN_00166 5661 RLYDSMKGKGTRD wildtype peptide Annexin A2 5662 DIEQSIKSETSGS wildtype peptide Annexin A4 B4DDF9_HUMAN_00143;Q6P452_HUMAN_00205 5663 KSELTGKFEKLIV wildtype peptide Annexin A5 D6RBL5_HUMAN_00016;E7ENQ5_HUMAN_00076;E9PHT9_HUMAN_00076 A6NN80_HUMAN_00063;E5RI05_HUMAN_00063;E5RIU8_HUMAN_00063;E5RJF5_HUMAN_0003 1;E5RJR0_HUMAN_00063;E5RK63_HUMAN_00031;E5RK69_HUMAN_00063;E7EMC6_HUMAN_0 5664 EVCQSYKSLYGKD wildtype peptide Annexin A6 0063;E9PGK1_HUMAN_00031;E5RFF0_HUMAN_00063 B7Z582_HUMAN_00173;A6NN80_HUMAN_00299;E5RK69_HUMAN_00092;E9PGK1_HUMAN_002 5665 FRTKYEKSLYSMI wildtype peptide Annexin A6 67 5666 TVAQLVKRLTDAD wildtype peptide ATP synthase subunit alpha, mitochondrial 5667 VRGYLDKLEPSKI wildtype peptide ATP synthase subunit alpha, mitochondrial 5668 MVYGIKKYGPFVA wildtype peptide ATP synthase subunit b, mitochondrial 5669 ISTQQEKETIAKC wildtype peptide ATP synthase subunit b, mitochondrial F8VPV9_HUMAN_00259;F8W079_HUMAN_00198;F8W0P7_HUMAN_00160;H0YH81_HUMAN_00 5670 SGVINLKDATSKV wildtype peptide ATP synthase subunit beta, mitochondrial 196 5671 YKANVAKAGLVDD wildtype peptide ATP synthase subunit d, mitochondrial F5H608_HUMAN_00063;ATP5H_HUMAN_00063 5672 KIQGEYKYTQVGP wildtype peptide ATP-dependent RNA helicase A 5673 PDGYIVKSQHSGN wildtype peptide ATP-dependent RNA helicase DDX1 B4DME8_HUMAN_00140;B4DPN6_HUMAN_00252 5674 VLAIHGKQKQNKR wildtype peptide ATP-dependent RNA helicase DDX18 F5H863_HUMAN_00197;H7C452_HUMAN_00122 Q4V9L5_HUMAN_00071;F5H4J5_HUMAN_00028;G3V529_HUMAN_00028;E7ETZ2_HUMAN_0007 5675 PSSLFSKEAPKRK wildtype peptide ATP-dependent RNA helicase DDX24 1 5676 ZZMNWNKGGPGTK wildtype peptide ATP-dependent RNA helicase DDX42 5677 ILPIKKKHLFENS wildtype peptide ATPase family AAA domain-containing protein 1 B4E2J1_HUMAN_00056;ATAD1_HUMAN_00114 Q05GC8_HUMAN_01177;TREF1_HUMAN_00913;TREF1_HUMAN_00925;TREF1_HUMAN_01074; 5678 SLIKPIKDVDILD wildtype peptide Transcriptional-regulating factor 1 TREF1_HUMAN_01086 5679 AEKLYAKAEALCK wildtype peptide BRO1 domain-containing protein BROX B7Z9G5_HUMAN_00251;F5GXQ0_HUMAN_00283 B7ZLN5_HUMAN_00105;Q17RB6_HUMAN_00105;A8WI61_HUMAN_00105;E9PI60_HUMAN_0010 5680 KKESCSKHASGTS wildtype peptide Bromodomain and PHD finger-containing protein 3 5;E9PSF3_HUMAN_00105;F6XDC4_HUMAN_00105;H0Y7B4_HUMAN_00078 B7ZLN5_HUMAN_00554;Q17RB6_HUMAN_00554;E9PI60_HUMAN_00554;E9PSF3_HUMAN_0055 5681 ELKYWQKLRHDLE wildtype peptide Bromodomain and PHD finger-containing protein 3 4;F6XDC4_HUMAN_00554;H0Y7B4_HUMAN_00527 5682 MKMEPVKELTGGG wildtype peptide Bromodomain-containing protein 1 F5H6M9_HUMAN_00007;BRD1_HUMAN_00368 5683 EEMKAAKEKLKYW wildtype peptide Bromodomain-containing protein 1 F5H6M9_HUMAN_00212;BRD1_HUMAN_00519 Acetylome - Acetyltransferase Microarray page 159 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5684 VGPLILKKKEVZZ wildtype peptide CDGSH iron-sulfur domain-containing protein 2 5685 ALYIWEKSIGNLV wildtype peptide Retinoblastoma-binding protein 5 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, 5686 QHLYVDKNTKIIC wildtype peptide mitochondrial 5687 NDQKKTKVKKKTS wildtype peptide Ras GTPase-activating protein 2 5688 EQVNELKEKGNKA wildtype peptide Stress-induced-phosphoprotein 1 F5GXD8_HUMAN_00008;F5H0T1_HUMAN_00008;F5H783_HUMAN_00008 5689 DYRQIAKAYARIG wildtype peptide Stress-induced-phosphoprotein 1 F5H0T1_HUMAN_00277;G3XAD8_HUMAN_00348 5690 KSSRFMKVGYERD wildtype peptide Luc7-like protein 3 D6RDI2_HUMAN_00127;F5H1W9_HUMAN_00078 5691 KDVSDEKLRDYIW wildtype peptide Citrate synthase, mitochondrial 5692 VLLEQGKAKNPWP wildtype peptide Citrate synthase, mitochondrial B4DJV2_HUMAN_00380;H0YIC4_HUMAN_00066 5693 TDLYDIKRAVVHT wildtype peptide Clathrin heavy chain 2 CLH1_HUMAN_00637;H0Y529_HUMAN_00022;CLH2_HUMAN_00637;CLH1_HUMAN_00637 5694 KQLPLVKPYLRSV wildtype peptide Clathrin heavy chain 1 5695 RVKNFLKEAKLTD wildtype peptide Clathrin heavy chain 2 CLH1_HUMAN_00764;CLH2_HUMAN_00764;CLH1_HUMAN_00764 5696 ZZZMAHKQIYYSD wildtype peptide Cyclin-dependent kinases regulatory subunit 2 5697 YQTNKAKHDELTY wildtype peptide Cystatin-B 5698 KCPKCNKEVYFAE wildtype peptide Cysteine-rich protein 1

5699 KKTAIHKALCDNV wildtype peptide Cysteine--tRNA ligase, cytoplasmic A8MVQ3_HUMAN_00493;B4DKY1_HUMAN_00516;SYCC_HUMAN_00503;SYCC_HUMAN_00586 5700 DLQPQLKIDKAVA wildtype peptide Cytochrome b-c1 complex subunit 2, mitochondrial H3BP04_HUMAN_00131;H3BRG4_HUMAN_00159;H3BSJ9_HUMAN_00159 5701 AVSASGKWLDGIR wildtype peptide Cytochrome b-c1 complex subunit 7 B7Z2R2_HUMAN_00012;E5RJU0_HUMAN_00012 5702 ELAKEEKCEFLPF wildtype peptide Dihydropyrimidine dehydrogenase [NADP(+)] 5703 AATGFLKLLADKN wildtype peptide DIS3-like exonuclease 2 F5H051_HUMAN_00252;F5H291_HUMAN_00252;DI3L2_HUMAN_00252;DI3L2_HUMAN_00252 5704 ITSHFAKGPAKRK wildtype peptide DNA (cytosine-5)-methyltransferase 1 F5GX68_HUMAN_00173;H0YFC7_HUMAN_00041;DNMT1_HUMAN_00189 5705 FAKGPAKRKPQEE wildtype peptide DNA (cytosine-5)-methyltransferase 1 F5GX68_HUMAN_00177;H0YFC7_HUMAN_00045;DNMT1_HUMAN_00193 5706 LRQVRGKASFLYS wildtype peptide DNA damage-binding protein 2 Q5TG36_HUMAN_00037;Q5TG37_HUMAN_00008;Q5TG38_HUMAN_00037;Q5TG39_HUMAN_00 5707 INPDKKKSKKSSE wildtype peptide DNA methyltransferase 1-associated protein 1 037;Q5TG40_HUMAN_00037 B4DGC9_HUMAN_00080;F8VZ52_HUMAN_00254;F8W8D1_HUMAN_00349;G8JL97_HUMAN_002 83;G8JLD5_HUMAN_00296;DNM1L_HUMAN_00283;DNM1L_HUMAN_00283;DNM1L_HUMAN_002 5708 ANRNGTKYLARTL wildtype peptide Dynamin-1-like protein 83;DNM1L_HUMAN_00283;DNM1L_HUMAN_00296 5709 LKSPDVKAVLAVL wildtype peptide Dynein heavy chain 5, axonemal 5710 ZZMSDRKAVIKNA wildtype peptide Dynein light chain 2, cytoplasmic A7E2D7_HUMAN_01436;EP400_HUMAN_01436;EP400_HUMAN_01399;EP400_HUMAN_01436;E 5711 PVQYGQKPEGRTV wildtype peptide E1A-binding protein p400 P400_HUMAN_01435 5712 PLPTFAKPTAEPG wildtype peptide E1A-binding protein p400 EP400_HUMAN_02320;EP400_HUMAN_02283;EP400_HUMAN_02239;EP400_HUMAN_02319 5713 VTDGRAKYWLERA wildtype peptide E3 SUMO-protein ligase RanBP2 C9JRL5_HUMAN_00114;D3DX73_HUMAN_00115;E9PGT0_HUMAN_00115 B4E1M2_HUMAN_00043;E5RFH6_HUMAN_00043;E5RFU2_HUMAN_00043;E5RI53_HUMAN_000 5714 LNDAFQKGGPEGA wildtype peptide Epoxide hydrolase 2 43;E7ETW9_HUMAN_00043;H0YAW7_HUMAN_00043 5715 PEVTALKVPEZZZ wildtype peptide Ethanolamine kinase 1 IF4A2_HUMAN_00310;B4DKP9_HUMAN_00172;Q9NZE6_HUMAN_00215;E7EQG2_HUMAN_0031 5716 HGDMDQKERDVIM wildtype peptide Eukaryotic initiation factor 4A-I 0;IF4A2_HUMAN_00311 5717 ERESIMKEFRSGA wildtype peptide Eukaryotic initiation factor 4A-III Eukaryotic peptide chain release factor GTP-binding subunit ERF3B_HUMAN_00622;F5GWG9_HUMAN_00539;H3BR35_HUMAN_00469;ERF3A_HUMAN_0063 5718 AIGKVLKLVPEKD wildtype peptide ERF3A 0 5719 DDYDKKKLVKAFK wildtype peptide Eukaryotic translation initiation factor 1b 5720 KIGVFSKDKFPGE wildtype peptide FACT complex subunit SPT16 5721 NAIMFGKKRHTDV wildtype peptide FACT complex subunit SPT16 5722 VMDVVKKQKPELL wildtype peptide FACT complex subunit SPT16 5723 KLSDFFKTHYRLE wildtype peptide FACT complex subunit SSRP1 5724 KDPNAPKRPMSAY wildtype peptide FACT complex subunit SSRP1 Acetylome - Acetyltransferase Microarray page 160 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5725 YNAIGGKYNRGLT wildtype peptide Farnesyl pyrophosphate synthase 5726 LTRRNGKQWLLGK wildtype peptide Fumarylacetoacetate hydrolase domain-containing protein 2B D3DXG4_HUMAN_00202;D3DXG5_HUMAN_00202 5727 SAKIRAKYPDRVP wildtype peptide Gamma-aminobutyric acid receptor-associated protein-like 2 H3BSM5_HUMAN_00024;H3BU36_HUMAN_00024 5728 RIVFSVKEKSQRQ wildtype peptide GC-rich sequence DNA-binding factor 1 GCFC1_HUMAN_00278;GCFC1_HUMAN_00278;GCFC1_HUMAN_00278 5729 KELFSEKHASLQN wildtype peptide Gem-associated protein 5 5730 TGVWLVKVPKYLS wildtype peptide General transcription factor IIF subunit 2 5731 RTNEEEKWLARQR wildtype peptide Genetic suppressor element 1 H0Y613_HUMAN_00303;GSE1_HUMAN_00392;GSE1_HUMAN_00423 5732 CDQNWYKAELNGK wildtype peptide Growth factor receptor-bound protein 2 5733 TNRGPIKFNVWDT wildtype peptide GTP-binding nuclear protein Ran B5MDF5_HUMAN_00060;F5H018_HUMAN_00056;H0YFC6_HUMAN_00075 5734 LTGEFEKKYVATL wildtype peptide GTP-binding nuclear protein Ran B5MDF5_HUMAN_00037;F5H018_HUMAN_00033;H0YFC6_HUMAN_00052 5735 LEYYQKKGVLETF wildtype peptide GTP:AMP phosphotransferase, mitochondrial E7ET30_HUMAN_00150;KAD3_HUMAN_00120 B9EK38_HUMAN_01436;E7EQJ8_HUMAN_01423;H0YJB5_HUMAN_00061;RGPA1_HUMAN_0142 5736 ESDKTEKSVLNCI wildtype peptide Ral GTPase-activating protein subunit alpha-1 3;RGPA1_HUMAN_01423;RGPA1_HUMAN_01423;RGPA1_HUMAN_01470 5737 HQMGWAKRNVDHR wildtype peptide Guanine nucleotide-binding protein-like 3-like protein RA1L2_HUMAN_00113;F8VRQ1_HUMAN_00113;F8VSB5_HUMAN_00113;F8VTQ5_HUMAN_0006 4;F8VXY0_HUMAN_00113;F8VYN5_HUMAN_00068;F8VZ49_HUMAN_00132;F8W1S7_HUMAN_0 5738 IFVGGIKEDTEEH wildtype peptide Heterogeneous nuclear ribonucleoprotein A1 0113;F8W6I7_HUMAN_00113;ROA1_HUMAN_00113;ROA1_HUMAN_00113

5739 LRDYFEKYGKIET wildtype peptide Heterogeneous nuclear ribonucleoprotein A3 B4DDB6_HUMAN_00126;E7ERJ4_HUMAN_00126;E7EWI9_HUMAN_00126;ROA3_HUMAN_00126 B4DTC3_HUMAN_00113;D6RAF8_HUMAN_00165;D6RBQ9_HUMAN_00146;D6RF44_HUMAN_00 067;F5H6R6_HUMAN_00011;H0Y8G5_HUMAN_00098;H0YA96_HUMAN_00069;H7BXN2_HUMAN 5740 EHKLNGKVIDPKR wildtype peptide Heterogeneous nuclear ribonucleoprotein D0 _00140;HNRPD_HUMAN_00146;HNRPD_HUMAN_00165;HNRPD_HUMAN_00146 5741 RYIEVFKSHRTEM wildtype peptide Heterogeneous nuclear ribonucleoprotein F 5742 LKIEYAKPTRLNV wildtype peptide Heterogeneous nuclear ribonucleoprotein L A6NIT8_HUMAN_00136;B4DPK8_HUMAN_00197;B4DVF8_HUMAN_00136 5743 KGCGVVKFESPEV wildtype peptide Heterogeneous nuclear ribonucleoprotein M Q59ES8_HUMAN_00583;F5H7Z1_HUMAN_00255;HNRPM_HUMAN_00659 5744 EVKMEAKMEVDQP wildtype peptide Histone acetyltransferase p300 5745 YTCNECKHHVETR wildtype peptide Histone acetyltransferase p300 CBP_HUMAN_01711;Q4LE28_HUMAN_01741;E9PEX7_HUMAN_00246 5746 VTKGDSKNAKKKN wildtype peptide Histone acetyltransferase p300 5747 AKKKNNKKTSKNK wildtype peptide Histone acetyltransferase p300 5748 SRGNKKKPGMPNV wildtype peptide Histone acetyltransferase p300 5749 IGAGKGKYYAVNY wildtype peptide Histone deacetylase 1 Q5TEE2_HUMAN_00195;Q6IT96_HUMAN_00220;F5GXM1_HUMAN_00027 5750 APKKGSKKAVTKV wildtype peptide Histone H2B type 2-F B4DR52_HUMAN_00016;H2B2F_HUMAN_00016 5751 VTKVQKKDGKKRK wildtype peptide Histone H2B type 2-F B4DR52_HUMAN_00025;H2B2F_HUMAN_00025 H33_HUMAN_00015;H31T_HUMAN_00015;H3C_HUMAN_00015;H32_HUMAN_00015;B4DEB1_H 5752 RKSTGGKAPRKQL wildtype peptide Histone H3.1 UMAN_00015;Q5TEC6_HUMAN_00015 5753 ATKAARKSAPATG wildtype peptide Histone H3.1 H32_HUMAN_00028;Q5TEC6_HUMAN_00028 5754 STGGVKKPHRYRP wildtype peptide Histone H3.3 5755 GRGKGGKGLGKGG wildtype peptide Histone H4 5756 SSSSKGKKKGRTQ wildtype peptide Inhibitor of growth protein 4 ING4_HUMAN_00105;ING4_HUMAN_00129 5757 YDSSSSKGKKSRT wildtype peptide Isoform 2 of Inhibitor of growth protein 4 5758 SSKGKKKGRTQKE wildtype peptide Inhibitor of growth protein 4 ING4_HUMAN_00107;ING4_HUMAN_00131 5759 TTKPKGKWFCPRC wildtype peptide Inhibitor of growth protein 5 D6R967_HUMAN_00053;D6RAD3_HUMAN_00053;D6RGV9_HUMAN_00053;E2QRM6_HUMAN_00 053;F8WDN9_HUMAN_00053;H0Y9D8_HUMAN_00050;IPYR2_HUMAN_00053;IPYR2_HUMAN_00 5760 NYRLFFKNVTGHY wildtype peptide Inorganic pyrophosphatase 2, mitochondrial 053 D6R967_HUMAN_00151;E2QRM6_HUMAN_00206;F8WDN9_HUMAN_00122;H0Y9D8_HUMAN_00 5761 HDIDDVKKFKPGY wildtype peptide Inorganic pyrophosphatase 2, mitochondrial 203;IPYR2_HUMAN_00239;IPYR2_HUMAN_00195 5762 RGELAIKDANAKL wildtype peptide Keratin, type II cytoskeletal 8 Q8IWY7_HUMAN_00537;F8VXB4_HUMAN_00375 KH domain-containing, RNA-binding, signal transduction- E5RG12_HUMAN_00126;E5RJZ9_HUMAN_00125;H0YAQ1_HUMAN_00068;H0YAQ3_HUMAN_00 5763 ALEEIKKFLIPDY wildtype peptide associated protein 3 078;KHDR3_HUMAN_00153 Acetylome - Acetyltransferase Microarray page 161 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5764 NRVPYVKGCTERF wildtype peptide Kinesin heavy chain isoform 5C KINH_HUMAN_00166;E9PET8_HUMAN_00072;H0Y2V0_HUMAN_00070 D6RCT7_HUMAN_00569;C9JKA9_HUMAN_00432;H7BYN9_HUMAN_00796;KIF15_HUMAN_0070 5765 TKNDFLKSEVHDL wildtype peptide Kinesin-like protein KIF15 0;KIF15_HUMAN_00797 K2C8_HUMAN_00178;K2C7_HUMAN_00179;K2C5_HUMAN_00257;K2C79_HUMAN_00233;E7EU8 7_HUMAN_00222;E7EUE8_HUMAN_00208;F8VXB4_HUMAN_00206;F5GZD1_HUMAN_00179;F8V P67_HUMAN_00061;F8VU64_HUMAN_00178;F8VUG2_HUMAN_00178;F8VZY5_HUMAN_00179;F 5766 VEDFKNKYEDEIN wildtype peptide Keratin, type II cytoskeletal 6A 8W0C6_HUMAN_00147;F8W1U3_HUMAN_00218 5767 LSYLYEKLYQKQI wildtype peptide Kynurenine--oxoglutarate transaminase 3 KAT3_HUMAN_00116;KAT3_HUMAN_00082 5768 QVKELSKGVESIV wildtype peptide Eukaryotic translation initiation factor 2D

5769 EEDPNFKKIDPKI wildtype peptide Lipopolysaccharide-responsive and beige-like anchor protein E9PEM5_HUMAN_02105;F5H1X8_HUMAN_02105;H0YAC6_HUMAN_00758;LRBA_HUMAN_02105 5770 EVQKMKKAVESLM wildtype peptide Liprin-beta-1 F5GZP6_HUMAN_00138;LIPB1_HUMAN_00290;LIPB1_HUMAN_00157;LIPB1_HUMAN_00279 D6RD96_HUMAN_00092;D6RDA8_HUMAN_00092;D6RF95_HUMAN_00051;D6RFW9_HUMAN_00 5771 AVSKFGKKDSLGT wildtype peptide Long-chain-fatty-acid--CoA ligase 4 092;ACSL4_HUMAN_00051 5772 ATLDDIKEWLEDK wildtype peptide Lupus La protein E7ERC4_HUMAN_00128;E9PFH8_HUMAN_00128;E9PGX9_HUMAN_00077 D6RAB1_HUMAN_00027;D6RID7_HUMAN_00027;D6RIV1_HUMAN_00027;E9PDK3_HUMAN_000 5773 EHPDDGKHPDGGL wildtype peptide Lymphoid enhancer-binding factor 1 27;LEF1_HUMAN_00095;LEF1_HUMAN_00095;LEF1_HUMAN_00095 Methylmalonate-semialdehyde dehydrogenase [acylating], 5774 LIKENLKEIAKLI wildtype peptide mitochondrial 5775 KYKFLQKYYHRGA wildtype peptide Microfibrillar-associated protein 1 F8VP44_HUMAN_00130;F8VVA6_HUMAN_00130;F8W0I9_HUMAN_00134;F8W126_HUMAN_001 5776 QPLQVTKDLGRWK wildtype peptide Microspherule protein 1 17;MCRS1_HUMAN_00143;MCRS1_HUMAN_00117 MARE1_HUMAN_00066;MARE3_HUMAN_00066;Q6FHB0_HUMAN_00066;C9JB30_HUMAN_0006 6;E9PHR3_HUMAN_00097;F5H1V8_HUMAN_00056;G5E9I6_HUMAN_00066;MARE2_HUMAN_00 5777 KVKFQAKLEHEYI wildtype peptide Microtubule-associated protein RP/EB family member 2 109;MARE3_HUMAN_00066 5778 ALTSILKAEGLRG wildtype peptide Mitochondrial 2-oxoglutarate/malate carrier protein 5779 NHKHHDKFTNTYQ wildtype peptide Mitochondrial carrier triple repeat protein 2 C9JMZ0_HUMAN_00232;D6R9J8_HUMAN_00234;D6RAH2_HUMAN_00234;D6RC63_HUMAN_002 32;D6RJG6_HUMAN_00234;F8W7V7_HUMAN_00252;MEF2C_HUMAN_00234;MEF2C_HUMAN_0 5780 SPGNLNKNMQAKS wildtype peptide Myocyte-specific enhancer factor 2C 0234;MEF2C_HUMAN_00186 Q05BX2_HUMAN_00007;Q5T9U4_HUMAN_00007;MEF2D_HUMAN_00007;MEF2D_HUMAN_0000 5781 ZZZMGRKKIQIQR wildtype peptide Myocyte-specific enhancer factor 2D 7;MEF2D_HUMAN_00007;MEF2D_HUMAN_00007;MEF2D_HUMAN_00007 Q5T9U4_HUMAN_00266;MEF2D_HUMAN_00266;MEF2D_HUMAN_00221;MEF2D_HUMAN_00267 5782 LGAPSRKPDLRVI wildtype peptide Myocyte-specific enhancer factor 2D ;MEF2D_HUMAN_00266;MEF2D_HUMAN_00221 B7Z6Z4_HUMAN_00174;F8VPF3_HUMAN_00069;F8VZU9_HUMAN_00033;F8VZV5_HUMAN_0008 1;F8W180_HUMAN_00126;F8W1R7_HUMAN_00081;G3V1V0_HUMAN_00081;G3V1Y7_HUMAN_0 5783 QTVAKNKDQGTYE wildtype peptide Myosin light polypeptide 6 0045;G8JLA2_HUMAN_00082;MYL6_HUMAN_00081

5784 ARDEVIKQLRKLQ wildtype peptide Myosin-10 F8VTL3_HUMAN_01676;F8W6L6_HUMAN_01661;MYH10_HUMAN_01661;MYH10_HUMAN_01666 5785 LLEPYNKYRFLSN wildtype peptide Myosin-9 H3BMX9_HUMAN_00135;H3BNK9_HUMAN_00035;H3BP64_HUMAN_00135;H3BU93_HUMAN_00 5786 KKEVEKKLTVKPI wildtype peptide Protein FAM192A 058;H3BUL4_HUMAN_00135 5787 PRVAPSKLEALQK wildtype peptide Negative elongation factor B 5788 PKVKMPKFSMPGF wildtype peptide Neuroblast differentiation-associated protein AHNAK 5789 NPEVGMKYRNLIL wildtype peptide Neurolysin, mitochondrial E9PCB6_HUMAN_00560;H0YAK4_HUMAN_00374 Q6X734_HUMAN_00109;B8ZZI0_HUMAN_00082;C9JN42_HUMAN_00109;E7EXA3_HUMAN_0008 5790 ITWNTWKERLVIR wildtype peptide NIF3-like protein 1 2;NIF3L_HUMAN_00082;NIF3L_HUMAN_00109 5791 TVRTVLKQEMNRL wildtype peptide N-alpha-acetyltransferase 15, NatA auxiliary subunit 5792 ZZZMGDKPIWEQI wildtype peptide Nuclear transport factor 2 Acetylome - Acetyltransferase Microarray page 162 of 167

Sequence PEP_FLAG Protein name Uniprot IDs E7ERR5_HUMAN_00348;E9PB35_HUMAN_00372;NUSAP_HUMAN_00410;NUSAP_HUMAN_0040 5793 QPHLQTKEEQRKK wildtype peptide Nucleolar and spindle-associated protein 1 9;NUSAP_HUMAN_00395;NUSAP_HUMAN_00410 5794 ITEKKAKKAKIKV wildtype peptide Nucleolar protein 58 5795 ISFSKPKKKKSFS wildtype peptide Nucleolar protein 56 Q9BQ02_HUMAN_00102;C9J1H7_HUMAN_00086;C9JLB1_HUMAN_00086;C9JWL1_HUMAN_000 5796 KTVTPAKAVTTPG wildtype peptide Nucleolin 86;C9JYW2_HUMAN_00086 5797 GNLNFNKSAPELK wildtype peptide Nucleolin 5798 FELFADKVPKTAE wildtype peptide Peptidyl-prolyl cis-trans isomerase A B4DM82_HUMAN_00028;C9J5S7_HUMAN_00028;F8WE65_HUMAN_00028 5799 KSIYGEKFEDENF wildtype peptide Peptidyl-prolyl cis-trans isomerase A Q567Q0_HUMAN_00022;C9J5S7_HUMAN_00082;F8WE65_HUMAN_00082 5800 TAWLDGKHVVFGK wildtype peptide Peptidyl-prolyl cis-trans isomerase B F5H1P5_HUMAN_00057;H0Y4T6_HUMAN_00039;H0Y610_HUMAN_00062;H0Y8P6_HUMAN_0003 5801 KKAQGPKGGGNAV wildtype peptide Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 9;PIN4_HUMAN_00057 C9JBL6_HUMAN_00438;C9JGS5_HUMAN_00308;E5RGQ4_HUMAN_00399;E7ETA6_HUMAN_003 99;E7EV56_HUMAN_00399;E7EV93_HUMAN_00438;E9PGW9_HUMAN_00438;PCM1_HUMAN_00 5802 KVELFSKMRVLQE wildtype peptide Pericentriolar material 1 protein 399;PCM1_HUMAN_00438 5803 MSSGNAKIGHPAP wildtype peptide Peroxiredoxin-1 5804 HVEEEGKGKDASG wildtype peptide Phosphoglycerate kinase 1 B4E1H9_HUMAN_00041;B7Z7A9_HUMAN_00103 B4DHM5_HUMAN_00116;B4E1H9_HUMAN_00201;B7Z7A9_HUMAN_00263;E7ERH5_HUMAN_00 5805 DFVTADKFDENAK wildtype peptide Phosphoglycerate kinase 1 155 5806 FRASLSKLGDVYV wildtype peptide Phosphoglycerate kinase 1 PGK2_HUMAN_00156;B4E1H9_HUMAN_00066;B7Z7A9_HUMAN_00128 5807 GLTGLNKAETAAK wildtype peptide Phosphoglycerate mutase 2 PGAM1_HUMAN_00100;PGAM4_HUMAN_00100;F2Z2J9_HUMAN_00100 5808 LGLKFNKIVHSSM wildtype peptide Serine/threonine-protein phosphatase PGAM5, mitochondrial 5809 EFYELDKKENIRQ wildtype peptide Phosphomannomutase 2 B7Z419_HUMAN_00024;F5H0W0_HUMAN_00066;H3BV55_HUMAN_00122 5810 DEKKIIKDILKDR wildtype peptide Pre-mRNA-processing factor 40 homolog B B5MD60_HUMAN_00059;PR40B_HUMAN_00563 5811 IPVPVQKNIDQQI wildtype peptide Pre-mRNA-splicing factor 38B 5812 KYFGAAKDLPGVR wildtype peptide Pre-mRNA-splicing factor ISY1 homolog A8MVI5_HUMAN_00127;H0YA89_HUMAN_00065;ISY1_HUMAN_00127;ISY1_HUMAN_00127 5813 LKVVQTKYVEAKD wildtype peptide Prefoldin subunit 5 H3BPF6_HUMAN_00038;PFD5_HUMAN_00042 5814 KQSGFGKDLGEEA wildtype peptide Mitochondrial 10-formyltetrahydrofolate dehydrogenase 5815 LRTEHEKYLVKHC wildtype peptide Probable asparagine--tRNA ligase, mitochondrial G3V178_HUMAN_00126;E9PRK2_HUMAN_00209 B4DZW2_HUMAN_00065;A2ACR0_HUMAN_00086;A2ACR1_HUMAN_00086;B0V0T2_HUMAN_00 086;B0V0T3_HUMAN_00086;A2ACQ9_HUMAN_00065;B0V060_HUMAN_00065;PSB9_HUMAN_00 5816 VRNISYKYREDLS wildtype peptide Proteasome subunit beta type-9 099 5817 SHFNWDKEKLMER wildtype peptide E3 ubiquitin-protein ligase ARIH1 H0Y2Q2_HUMAN_00112;H3BNB9_HUMAN_00141 5818 SKSVIVKSVERNA wildtype peptide Protein bicaudal C homolog 1 A6NGY7_HUMAN_00024;E7EU62_HUMAN_00318;BICC1_HUMAN_00398 5819 PTLTIIKTEKVDL wildtype peptide Protein C-ets-1 Q96AC5_HUMAN_00015;F5GYX9_HUMAN_00015;ETS1_HUMAN_00015 5820 HPRPSRKPVDSVP wildtype peptide Protein DBF4 homolog B B4E099_HUMAN_00135;DBF4B_HUMAN_00135;DBF4B_HUMAN_00135 5821 SENRVEKDGLILT wildtype peptide Protein DJ-1

5822 SKSTEIKWKSGKD wildtype peptide Protein SET A6NGV1_HUMAN_00148;Q5VXV2_HUMAN_00150;B2REB8_HUMAN_00147;SET_HUMAN_00159

SON_HUMAN_00288;SON_HUMAN_00288;SON_HUMAN_00288;SON_HUMAN_00288;SON_HUM 5823 TSPEPSKIMLVEP wildtype peptide Protein SON AN_00288;SON_HUMAN_00288;SON_HUMAN_00288;SON_HUMAN_00288;SON_HUMAN_00288 F8W8H8_HUMAN_00412;SBNO1_HUMAN_00412;SBNO1_HUMAN_00411;SBNO1_HUMAN_0041 5824 ESQSGGKYKTRLK wildtype peptide Protein strawberry notch homolog 1 2 5825 RDLIFHKGLHNLR wildtype peptide Protein timeless homolog E7EWS5_HUMAN_00299;TIM_HUMAN_00298 A4QN19_HUMAN_00249;SC16A_HUMAN_00444;SC16A_HUMAN_00444;SC16A_HUMAN_00444; 5826 SHLVGVKPFEADR wildtype peptide Protein transport protein Sec16A SC16A_HUMAN_00444 5827 GGLVAGKEEKKKA wildtype peptide Protein unc-119 homolog B 5828 ERIEREKEELMER wildtype peptide Radixin A7YIJ8_HUMAN_00344;F5H1A7_HUMAN_00208 5829 VHMGLLKSEDKVK wildtype peptide Ran GTPase-activating protein 1 Acetylome - Acetyltransferase Microarray page 163 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5830 EELASIKNRQRIQ wildtype peptide Ran-binding protein 9 B2R8E1_HUMAN_00176;RANB9_HUMAN_00064

5831 KAEKFAKLEERTR wildtype peptide Rap1 GTPase-activating protein 1 F2Z357_HUMAN_00384;G3V1A7_HUMAN_00384;RPGP1_HUMAN_00384;RPGP1_HUMAN_00414 5832 RLLYFYKPSSKLY wildtype peptide Rapamycin-insensitive companion of mTOR E7ETT0_HUMAN_00582;RICTR_HUMAN_00582 5833 QGLALAKEIDSVK wildtype peptide Ras-related C3 botulinum toxin substrate 2 B1AH77_HUMAN_00103;B1AH78_HUMAN_00147;B1AH80_HUMAN_00140 5834 KPFQAQKQEPHPG wildtype peptide Ribonucleases P/MRP protein subunit POP1 5835 FFTTPSKSVRKAS wildtype peptide Ribosomal L1 domain-containing protein 1 B4DJ58_HUMAN_00248;H7BY09_HUMAN_00467 5836 DTPFLPKPLFFRR wildtype peptide Ribosomal RNA processing protein 1 homolog B C9JHZ3_HUMAN_00634;RRP1B_HUMAN_00634 5837 YDSNTGKLIRTGA wildtype peptide RNA polymerase II subunit A C-terminal domain phosphatase CTDP1_HUMAN_00661;CTDP1_HUMAN_00661;CTDP1_HUMAN_00780 5838 HVIDFFKKLDIVE wildtype peptide RNA-binding protein 12 RBM10_HUMAN_00653;Q59HE6_HUMAN_00232;H0YGC0_HUMAN_00541;RBM10_HUMAN_0065 5839 TAQQIAKDMERWA wildtype peptide RNA-binding protein 5 2;RBM10_HUMAN_00576;RBM10_HUMAN_00575 5840 ATVKQLKEFIQQP wildtype peptide Serine/threonine-protein kinase SMG1 E9PNP6_HUMAN_00147;H3BPS6_HUMAN_00041;SMG1_HUMAN_00033 5841 QIHKFDKQKLYYH wildtype peptide Serine/threonine-protein kinase TBK1 Serine/threonine-protein phosphatase 2A 65 kDa regulatory 5842 VGPEITKTDLVPA wildtype peptide subunit A alpha isoform B4DDF7_HUMAN_00270;E9PH38_HUMAN_00200;F5H3X9_HUMAN_00225 Q68CR8_HUMAN_00077;A6PVN5_HUMAN_00302;B7ZBQ0_HUMAN_00034;PTPA_HUMAN_0029 5843 GLIRMYKAECLEK wildtype peptide Serine/threonine-protein phosphatase 2A activator 6;PTPA_HUMAN_00267;PTPA_HUMAN_00254 5844 NDYFKAKDYENAI wildtype peptide Serine/threonine-protein phosphatase 5 B4DDZ8_HUMAN_00042;H0YDU8_HUMAN_00041 5845 RPRRKAKMLPKNC wildtype peptide Sex-determining region Y protein F5H6J8_HUMAN_00136;F5H3H1_HUMAN_00136 SPTB2_HUMAN_00124;SPTN4_HUMAN_00131;B2ZZ89_HUMAN_00124;E9PDB1_HUMAN_00131 ;Q59FP5_HUMAN_00128;C9JRP8_HUMAN_00131;D6W5C0_HUMAN_00038;F8W6C1_HUMAN_0 0124;SPTB1_HUMAN_00124;SPTB1_HUMAN_00124;SPTB2_HUMAN_00124;SPTB2_HUMAN_00 5846 KALQFLKEQRVHL wildtype peptide Spectrin beta chain, erythrocyte 111;SPTN4_HUMAN_00131;SPTN4_HUMAN_00131 STRBP_HUMAN_00206;C9JFV5_HUMAN_00214;G5E9M5_HUMAN_00214;ILF3_HUMAN_00214;IL F3_HUMAN_00214;ILF3_HUMAN_00214;ILF3_HUMAN_00214;ILF3_HUMAN_00214;STRBP_HUM 5847 ASLRHAKWFQARA wildtype peptide Interleukin enhancer-binding factor 3 AN_00192 Q5STU3_HUMAN_00036;E7EMX2_HUMAN_00036;F6QWI5_HUMAN_00036;F6QYI9_HUMAN_000 59;F6R6M7_HUMAN_00036;F6S2B7_HUMAN_00036;F6S4E6_HUMAN_00036;F6SXL5_HUMAN_0 0051;F6TRA5_HUMAN_00036;F6U6E2_HUMAN_00036;F6UN21_HUMAN_00036;F6V772_HUMAN _00059;F6WLT2_HUMAN_00036;F8VQ10_HUMAN_00036;F8VZL8_HUMAN_00036;DX39B_HUMA 5848 PAKKDVKGSYVSI wildtype peptide Spliceosome RNA helicase DDX39B N_00036 5849 YRVEWAKFQERER wildtype peptide Splicing factor 3A subunit 1 E9PAW1_HUMAN_00186;F5H048_HUMAN_00148 5850 ERHLLVKVIDRIL wildtype peptide Splicing factor 3B subunit 1 5851 HQETFGKSGCRRI wildtype peptide Splicing factor 3B subunit 3 5852 QSAFDLKKKNLAC wildtype peptide Structural maintenance of chromosomes protein 2 F5GZR0_HUMAN_00320;SMC2_HUMAN_00320 5853 NPYYIVKQGKINQ wildtype peptide Structural maintenance of chromosomes protein 3 5854 QYFLDKKMVTKND wildtype peptide Structural maintenance of chromosomes protein 3 5855 KSSYADKAPSRSL wildtype peptide Structural maintenance of chromosomes protein 5 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, D6RFM5_HUMAN_00498;E9PBJ5_HUMAN_00450;E9PEF8_HUMAN_00353;H0Y8X1_HUMAN_000 5856 SVMNLDKLRFADG wildtype peptide mitochondrial 50 Succinate dehydrogenase [ubiquinone] flavoprotein subunit, 5857 DEYDYSKPIQGQQ wildtype peptide mitochondrial D6RFM5_HUMAN_00527;E9PBJ5_HUMAN_00560;E9PEF8_HUMAN_00463 TCPW_HUMAN_00295;B4DPJ8_HUMAN_00264;B4DX20_HUMAN_00258;A6NCD2_HUMAN_0025 5858 FVVINQKGIDPFS wildtype peptide T-complex protein 1 subunit zeta 0;TCPW_HUMAN_00250 5859 STANLVKTIKALD wildtype peptide Talin-1 TLN2_HUMAN_01543;Q5TCU6_HUMAN_01541;H0YMT1_HUMAN_00457 5860 PEKLLEKAFAIRL wildtype peptide TBC1 domain family member 24 H3BQ06_HUMAN_00288;TBC24_HUMAN_00288 5861 LYPPRAKLVIQRH wildtype peptide TBC1 domain family member 4 TBCD4_HUMAN_00477;TBCD4_HUMAN_00477 H3BR06_HUMAN_00090;H3BR37_HUMAN_00066;H3BTA7_HUMAN_00048;TERF2_HUMAN_0016 5862 IICIKNKEFEKAS wildtype peptide Telomeric repeat-binding factor 2 9 Acetylome - Acetyltransferase Microarray page 164 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5863 TKKDNMKYASWAA wildtype peptide Tetratricopeptide repeat protein 35 B4E082_HUMAN_00321;Q2TAM5_HUMAN_00310;E9PKH5_HUMAN_00321;H0YCB4_HUMAN_00 5864 RTYETFKSIMKKS wildtype peptide Transcription factor p65 044;TF65_HUMAN_00297;TF65_HUMAN_00300;TF65_HUMAN_00307 5865 DKIVISKVVPAPE wildtype peptide Transcription initiation factor TFIID subunit 3 5866 AILQIMKELNKRG wildtype peptide Transcription intermediary factor 1-beta 5867 MFKQFNKLTEDKA wildtype peptide Transcription intermediary factor 1-beta F8WDE0_HUMAN_00732;ATRX_HUMAN_00601;ATRX_HUMAN_00688;ATRX_HUMAN_00767;AT 5868 KSSIISKKKRQTQ wildtype peptide Transcriptional regulator ATRX RX_HUMAN_00650;ATRX_HUMAN_00737 5869 ETFIKGKERKTYQ wildtype peptide Transcriptional repressor CTCF 5870 LNKVDQKVKVFNL wildtype peptide tRNA (guanine(37)-N1)-methyltransferase Q5VU59_HUMAN_00161;Q5VU61_HUMAN_00153;Q8NAG3_HUMAN_00112;TPM3_HUMAN_0017 5871 LSAAEEKYSQKED wildtype peptide Tropomyosin 3 7;TPM3_HUMAN_00177 5872 LEAASEKYSEKED wildtype peptide Tropomyosin alpha-4 chain TBA1B_HUMAN_00394;TBA4A_HUMAN_00394;TBA3C_HUMAN_00394;TBA1A_HUMAN_00394;T BA1C_HUMAN_00394;TBA8_HUMAN_00394;A8MUB1_HUMAN_00379;C9J2C0_HUMAN_00418;F 5H5D3_HUMAN_00464;G3V1U9_HUMAN_00359;E7ET24_HUMAN_00125;F8VWX4_HUMAN_0012 5873 WARLDHKFDLMYA wildtype peptide Tubulin alpha chain-like 3 5;F8VXZ4_HUMAN_00241;TBAL3_HUMAN_00361;TBA8_HUMAN_00328 TBA3C_HUMAN_00060;TBA3E_HUMAN_00060;TBA1A_HUMAN_00060;TBA1C_HUMAN_00060;F 5H5D3_HUMAN_00130;F8VQQ4_HUMAN_00025;G3V1U9_HUMAN_00025;E7ET24_HUMAN_0006 0;E9PGK3_HUMAN_00060;F8VRK0_HUMAN_00025;F8VRZ4_HUMAN_00025;F8VS66_HUMAN_0 0060;F8VS94_HUMAN_00060;F8VVB9_HUMAN_00060;F8VWV9_HUMAN_00025;F8VWX4_HUMA N_00060;F8VX09_HUMAN_00025;F8VXB8_HUMAN_00060;F8VYI2_HUMAN_00060;F8W0F6_HUM 5874 SETGAGKHVPRAV wildtype peptide Tubulin alpha-1B chain AN_00060;TBA3C_HUMAN_00060 TBA4A_HUMAN_00370;TBA3C_HUMAN_00370;TBA3E_HUMAN_00370;TBA1A_HUMAN_00370;T BA1C_HUMAN_00370;TBA8_HUMAN_00370;A8MUB1_HUMAN_00355;C9J2C0_HUMAN_00394;F 5H5D3_HUMAN_00440;G3V1U9_HUMAN_00335;E7ET24_HUMAN_00101;E9PGK3_HUMAN_0024 0;F8VWX4_HUMAN_00101;F8VXZ4_HUMAN_00217;TBA3C_HUMAN_00370;TBA8_HUMAN_0030 5875 PGGDLAKVQRAVC wildtype peptide Tubulin alpha-1B chain 4 5876 LAEEYSKDRKKFC wildtype peptide Ubiquitin-conjugating enzyme E2 L3 B4DDG1_HUMAN_00099;E7EWS7_HUMAN_00189 5877 LDILKDKWSPALQ wildtype peptide Ubiquitin-conjugating enzyme E2 N F8VQQ8_HUMAN_00031;UE2NL_HUMAN_00095 5878 REENLLKISRRVK wildtype peptide Ubiquitin-like domain-containing CTD phosphatase 1 5879 QYLTDPKFVERTL wildtype peptide Ubiquitin-like modifier-activating enzyme 1 B4DDE4_HUMAN_00183;Q5JRR6_HUMAN_00119;E7ERL1_HUMAN_00216 5880 RLLFKGKALADGK wildtype peptide Ubiquitin-like protein 4A 5881 VPTFGKKKGPNAN wildtype peptide 40S ribosomal protein S30 5882 QKIRHYKIEDRGN wildtype peptide UPF0568 protein C14orf166 G3V4C6_HUMAN_00041;G3V4E7_HUMAN_00041 5883 KKINLLKNIDEKL wildtype peptide UPF0609 protein C4orf27 5884 ZZMIGQKTLYSFF wildtype peptide Uracil-DNA glycosylase 5885 FPVAGQKLIYAGK wildtype peptide UV excision repair protein RAD23 homolog A RD23B_HUMAN_00045;Q5W0S4_HUMAN_00024;Q5W0S5_HUMAN_00045 5886 RIDNFSKVPVVFT wildtype peptide Vacuolar protein sorting-associated protein 13D H3BLS7_HUMAN_02346;VP13D_HUMAN_03499 5887 DDKWEKKCQKIFS wildtype peptide Vacuolar protein sorting-associated protein 35 F5GYF5_HUMAN_00421;H3BR93_HUMAN_00065;H3BRJ7_HUMAN_00527 5888 RNFSELKMKRLRK wildtype peptide Similar to 60S ribosomal protein L7; similar to P18124

5889 VSETIPKDHRCCM wildtype peptide Xaa-Pro aminopeptidase 1 Q5T6H7_HUMAN_00233;G5E9Y2_HUMAN_00347;G8JLB2_HUMAN_00347;XPP1_HUMAN_00304 5890 KRWIHVKPERLEQ wildtype peptide Zinc finger and BTB domain-containing protein 43 E7EUW9_HUMAN_00377;E7ESP8_HUMAN_00377;F5H601_HUMAN_00372;F5H814_HUMAN_003 5891 NKLENGKPLSMSE wildtype peptide Zinc finger E-box-binding homeobox 2 53 5892 IGGKPFKCEECDS wildtype peptide Zinc finger protein 195 ZN195_HUMAN_00339;ZN195_HUMAN_00388;ZN195_HUMAN_00392;ZN195_HUMAN_00343 5893 HCAAAEKPLRCTL wildtype peptide Zinc finger protein 319 5894 PASIRPKTDDTSS wildtype peptide Ski oncogene 5895 IVAKNNKNMAFKL wildtype peptide GTP-binding protein GEM Acetylome - Acetyltransferase Microarray page 165 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5896 KAAPAPKAQKGQK wildtype peptide 60S ribosomal protein L14 5897 YVPDKKKAPSSPP wildtype peptide Protein Shroom2 5898 NPRDLHKPIQEVI wildtype peptide Alcohol dehydrogenase 4 H0Y9N0_HUMAN_00084;ADH4_HUMAN_00273 5899 ZZMADIKTGIFAK wildtype peptide Amphiphysin F5H533_HUMAN_00007;F5H6E8_HUMAN_00007;AMPH_HUMAN_00007 5900 VVMETNKMLREEK wildtype peptide Nucleoprotein TPR 5901 ITEATLKHLDKAY wildtype peptide Adenylate cyclase type 7 F5H4D1_HUMAN_00422;H3BQ93_HUMAN_00422 5902 GSYAYPKSEIIYT wildtype peptide Gamma-aminobutyric acid receptor subunit alpha-6 E7EV53_HUMAN_00171;H0YBP3_HUMAN_00121;H0YBS7_HUMAN_00128 5903 KRVSRNKSEKKRR wildtype peptide Circadian locomoter output cycles protein kaput 5904 ADSLGGKEEKREE wildtype peptide Homeobox protein Hox-C6 5905 KHVVFGKVLEGME wildtype peptide Peptidyl-prolyl cis-trans isomerase B 5906 GRGFRNKSHLLRH wildtype peptide Histone-lysine N-methyltransferase PRDM9 5907 VVLALEKYCRTEA wildtype peptide Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC A6NGN6_HUMAN_00325;B1AJZ5_HUMAN_00374 5908 DENLIRKHTGSGI wildtype peptide Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C PAL4G_HUMAN_00091;F5H284_HUMAN_00091 5909 GVLSWLKGHKRYC wildtype peptide Doublesex- and mab-3-related transcription factor 3 5910 FVGIKKKEERADL wildtype peptide Cytochrome c

E2GH20_HUMAN_00083;Q5JRY3_HUMAN_00010;Q5JRY4_HUMAN_00078;Q5JRY5_HUMAN_000 84;TF7L1_HUMAN_00363;F8W742_HUMAN_00344;F8W7T5_HUMAN_00391;TF7L2_HUMAN_003 40;TF7L2_HUMAN_00367;TF7L2_HUMAN_00367;TF7L2_HUMAN_00367;TF7L2_HUMAN_00367;T 5911 MKEMRAKVVAECT wildtype peptide Transcription factor 7-like 2 F7L2_HUMAN_00367;TF7L2_HUMAN_00367;TF7L2_HUMAN_00344;TF7L2_HUMAN_00367 5912 SGPNRLKIRIDAM wildtype peptide Phosphoglucomutase-1 B4DPV0_HUMAN_00022;F5H857_HUMAN_00195;PGM1_HUMAN_00237 5913 SRAKGIKIGSREK wildtype peptide Leucine-rich repeat-containing protein 71

5914 LAHYLEKALLDMR wildtype peptide Carnitine O-acetyltransferase C9JBD1_HUMAN_00528;H0Y4Z7_HUMAN_00184;CACP_HUMAN_00588;CACP_HUMAN_00527 E9PDY7_HUMAN_00285;E9PFQ4_HUMAN_00285;G5E9V3_HUMAN_00285;G8JLD7_HUMAN_003 5915 GNSKRTKLGEKDL wildtype peptide Pleckstrin homology-like domain family B member 2 12;PHLB2_HUMAN_00285;PHLB2_HUMAN_00312 5916 KYNLYGKDIKEKA wildtype peptide Glutathione S-transferase A2 5917 NRNNDRKRAKEYK wildtype peptide Protein FAM161B F75A1_HUMAN_01238;F75A5_HUMAN_01238;F75A3_HUMAN_01238;F75A7_HUMAN_01238;F75 5918 VNQHKQKFQAPVC wildtype peptide Protein FAM75A6 A4_HUMAN_01238;F75A2_HUMAN_01238;F2Z2P7_HUMAN_01163 5919 PFLFKQKLLMNCS wildtype peptide Poly [ADP-ribose] polymerase 12 5920 EDLDQAKTQIGMT wildtype peptide Nesprin-2 F8WAA3_HUMAN_01758;G3V5X4_HUMAN_01758;SYNE2_HUMAN_01758 5921 QTIAQYKFVYQVL wildtype peptide Tyrosine-protein phosphatase non-receptor type 14 5922 PTMNYEKLSRALR wildtype peptide GA-binding protein alpha chain 5923 RTRGPGKKRRGPQ wildtype peptide cDNA FLJ42787 fis, clone BRAWH3006792 C9JKD6_HUMAN_00319;D6W5E6_HUMAN_00158;E7EUC7_HUMAN_00328;UGPA_HUMAN_0030 5924 AHVDEFKSVSKFK wildtype peptide UTP--glucose-1-phosphate uridylyltransferase 8 5925 IKDNQQKKIQKVE wildtype peptide Leucine-rich repeat and IQ domain-containing protein 1 C9JI57_HUMAN_00556;LRIQ1_HUMAN_00556 5926 QCKTEEKLDLLTS wildtype peptide Aftiphilin AFTIN_HUMAN_00357;AFTIN_HUMAN_00357;AFTIN_HUMAN_00357;AFTIN_HUMAN_00357 5927 KTKKVTKNEEPSE wildtype peptide Nucleolar RNA helicase 2 5928 GIPAGAKTKKKKT wildtype peptide Golgin subfamily A member 6A GOG6C_HUMAN_00045;GOG6B_HUMAN_00045;GOG6D_HUMAN_00045 5929 YLAQHRKIHTGEK wildtype peptide Zinc finger protein 534 H7BYH9_HUMAN_00302;ZN534_HUMAN_00290 5930 GQRILTKSCWECR wildtype peptide NELL1 protein 5931 NRFPNPKRMQELL wildtype peptide Neutral alpha-glucosidase C 5932 TFNSITKRRHHCK wildtype peptide FYVE, RhoGEF and PH domain-containing protein 3 B4DXH4_HUMAN_00153;F8W7P2_HUMAN_00550;FGD3_HUMAN_00550 5933 FGKQTNKMESSRK wildtype peptide Leucine-rich repeat-containing protein 63 5934 ILHGLDKVAEEWA wildtype peptide Argininosuccinate lyase Q6XYD2_HUMAN_00049;E7EMI0_HUMAN_00069;E9PE48_HUMAN_00069 5935 LYHNEKKIHLLNT wildtype peptide Structural maintenance of chromosomes protein 1B SMC1B_HUMAN_00234;SMC1B_HUMAN_00234 5936 KDHPKFKEIQNLI wildtype peptide Isochorismatase domain-containing protein 1 5937 DLQALEKELVDRH wildtype peptide Pyruvate carboxylase, mitochondrial Acetylome - Acetyltransferase Microarray page 166 of 167

Sequence PEP_FLAG Protein name Uniprot IDs C9JGV8_HUMAN_00208;F5H0W8_HUMAN_00208;BDP1_HUMAN_00208;BDP1_HUMAN_00208;B 5938 SLEQEKKTEKPST wildtype peptide Transcription factor TFIIIB component B homolog DP1_HUMAN_00208;BDP1_HUMAN_00188;BDP1_HUMAN_00208 5939 RYPASMKQLQQRS wildtype peptide Leucine-rich repeat transmembrane neuronal protein 3 E7EWX9_HUMAN_00470;E9PGE8_HUMAN_00386;F8WF45_HUMAN_00470;TMF1_HUMAN_0047 5940 QLLSLSKEKALLE wildtype peptide TATA element modulatory factor 3 D3DPF9_HUMAN_16513;D3DPG0_HUMAN_24529;E7ENC6_HUMAN_16511;TITIN_HUMAN_1663 8;TITIN_HUMAN_23010;TITIN_HUMAN_23845;TITIN_HUMAN_16513;TITIN_HUMAN_23032;TITIN 5941 NRYDSGKYTLTLE wildtype peptide Titin _HUMAN_22487;TITIN_HUMAN_23202;TITIN_HUMAN_24062;TITIN_HUMAN_16705 A6NFQ9_HUMAN_00381;A6NMH6_HUMAN_00383;C9J9B6_HUMAN_00387;F6W7K9_HUMAN_00 5942 HQEEKRKVEEKRR wildtype peptide Septin-8 383;F8W8I8_HUMAN_00381;SEPT8_HUMAN_00383;SEPT8_HUMAN_00323 5943 KMTVFPKNKSSTD wildtype peptide Serine/threonine-protein kinase PLK4 PLK4_HUMAN_00295;PLK4_HUMAN_00286 5944 VEGFLTKCIQLYE wildtype peptide Dynein heavy chain 1, axonemal DYH1_HUMAN_01844;DYH1_HUMAN_01844;DYH1_HUMAN_01844 5945 REPSGKKQNKRVN wildtype peptide StAR-related lipid transfer protein 9

C9JGC1_HUMAN_00147;E9PDV3_HUMAN_00203;F5H575_HUMAN_00215;F8W7T1_HUMAN_002 5946 VCDICGKRYKNRP wildtype peptide Zinc finger protein DPF3 60;DPF1_HUMAN_00229;DPF1_HUMAN_00147;DPF3_HUMAN_00205;DPF3_HUMAN_00260 5947 NYVPLEKQEEERQ wildtype peptide Probable ATP-dependent RNA helicase DDX46 E9PAU5_HUMAN_00072;F5H142_HUMAN_00265;H3BM22_HUMAN_00092;H7BXN4_HUMAN_000 13;CAPR2_HUMAN_00346;CAPR2_HUMAN_00346;CAPR2_HUMAN_00346;CAPR2_HUMAN_000 5948 KKTQLSKTESVKE wildtype peptide Caprin-2 13;CAPR2_HUMAN_00346;CAPR2_HUMAN_00346;CAPR2_HUMAN_00346 ZN642_HUMAN_00442;ZN571_HUMAN_00394;ZN643_HUMAN_00450;D3DPV3_HUMAN_00450;E 5949 ERPYKCKECGKAF wildtype peptide Zinc finger protein 192 7EN37_HUMAN_00381;ZN643_HUMAN_00348 RBL2B_HUMAN_00034;A8MXF6_HUMAN_00034;B7ZBD3_HUMAN_00034;B7ZBD4_HUMAN_0003 4;B7ZBD5_HUMAN_00034;E7EWW3_HUMAN_00034;F2Z2E5_HUMAN_00034;F2Z2T3_HUMAN_0 0034;F2Z3J7_HUMAN_00034;RBL2A_HUMAN_00034;RBL2A_HUMAN_00034;RBL2B_HUMAN_00 5950 GDSAVGKSKLMER wildtype peptide Rab-like protein 2A 034;RBL2B_HUMAN_00034 5951 KESIRAKCVQYLD wildtype peptide Vacuolar protein sorting-associated protein 4A 5952 VEINSKKETSGSQ wildtype peptide Multidrug resistance-associated protein 5 Q86UX3_HUMAN_00798;E9PBW0_HUMAN_00734 5953 KKGNEEKMKEGLE wildtype peptide Epidermal growth factor-like protein 6 5954 QAERQWKKQLGPP wildtype peptide Protein ERGIC-53-like H3BN74_HUMAN_00019;LMA1L_HUMAN_00326 5955 PSKKLKKSQCTPL wildtype peptide Probable methylthioribulose-1-phosphate dehydratase B7Z690_HUMAN_00039;B7Z963_HUMAN_00039;Q5JWM4_HUMAN_00039;H7BZ38_HUMAN_000 5956 KQSYKEKRGGFVL wildtype peptide Threonine aspartase 1 17 5957 EAIYYFKANVFFK wildtype peptide Actin-related protein 2/3 complex subunit 3 B4DM63_HUMAN_00050;C9JZD1_HUMAN_00050;F8VR50_HUMAN_00042 2ABB_HUMAN_00084;2ABD_HUMAN_00094;2ABG_HUMAN_00084;E5RIY1_HUMAN_00088;G3V 149_HUMAN_00073;2ABA_HUMAN_00098;2ABB_HUMAN_00087;2ABB_HUMAN_00090;2ABB_H Serine/threonine-protein phosphatase 2A 55 kDa regulatory UMAN_00142;2ABB_HUMAN_00150;2ABG_HUMAN_00084;2ABG_HUMAN_00067;2ABG_HUMAN 5958 PEFDYLKSLEIEE wildtype peptide subunit B alpha isoform _00077 5959 KNRFRDKEWIRPD wildtype peptide ATP synthase subunit s-like protein 5960 IGNECGKAFRVSS wildtype peptide Zinc finger protein 841 ZN841_HUMAN_00152;ZN841_HUMAN_00268 5961 VQKWLGKETTIKR wildtype peptide Fatty acid-binding protein 9

5962 SHCRTVKGTLGKA wildtype peptide A disintegrin and metalloproteinase with thrombospondin motifs 14 ATS14_HUMAN_00650;ATS14_HUMAN_00653;ATS14_HUMAN_00720 5963 GWGRTEKRDRAVR wildtype peptide Complement C1s subcomponent A6NG18_HUMAN_00569;F8WCZ6_HUMAN_00408 LAC1_HUMAN_00023;LAC2_HUMAN_00023;LAC3_HUMAN_00023;IGLL1_HUMAN_00130;IGLL5_ 5964 EELQANKATLVCL wildtype peptide Ig lambda-7 chain C region HUMAN_00131;C9JEE0_HUMAN_00131;LAC6_HUMAN_00023 E7ER65_HUMAN_00271;E9PDX3_HUMAN_00300;H3BNE9_HUMAN_00300;KI13A_HUMAN_0030 5965 AGKGKSKFVPYRD wildtype peptide Kinesin-like protein KIF13A 0;KI13A_HUMAN_00300;KI13A_HUMAN_00300 D3YHP0_HUMAN_00121;B7WPI3_HUMAN_00121;CXAR_HUMAN_00121;CXAR_HUMAN_00121; 5966 IGTYQCKVKKAPG wildtype peptide Coxsackievirus and adenovirus receptor CXAR_HUMAN_00121 Acetylome - Acetyltransferase Microarray page 167 of 167

Sequence PEP_FLAG Protein name Uniprot IDs 5967 KFSQASKDFCEAL wildtype peptide Rhodopsin kinase SEP11_HUMAN_00361;B4E049_HUMAN_00304;B1AMS2_HUMAN_00362;D6RDU5_HUMAN_0035 3;D6RER5_HUMAN_00361;D6RGI3_HUMAN_00361;E7ETH8_HUMAN_00392;F5H1J5_HUMAN_00 392;H0Y961_HUMAN_00090;H0Y9G8_HUMAN_00014;SEPT6_HUMAN_00362;SEPT6_HUMAN_00 5968 ELKEAEKELHEKF wildtype peptide Septin-6 362;SEP11_HUMAN_00371 5969 AKVLGSKDATRQQ wildtype peptide Serine/threonine-protein kinase LATS2 5970 EYLELEKCLSRME wildtype peptide Protein HEXIM1 CP4F8_HUMAN_00294;B4DU85_HUMAN_00106;B4DV75_HUMAN_00145;CP4F3_HUMAN_00294 5971 QAKAKSKTLDFID wildtype peptide Leukotriene-B(4) omega-hydroxylase 1 A8MU03_HUMAN_00145;F5H469_HUMAN_00221;H7C3A8_HUMAN_00143 A6NNK5_HUMAN_01622;F8VY86_HUMAN_01672;H7BZY0_HUMAN_00135;TP53B_HUMAN_0167 5972 MGVLSGKRKLITS wildtype peptide Tumor suppressor p53-binding protein 1 2 5973 KLSGGQKRKLSLG wildtype peptide ATP-binding cassette sub-family A member 5 E7ETD3_HUMAN_00620;ABCA5_HUMAN_00620 5974 GGGSSSKRFLRSC wildtype peptide Tyrosine-protein kinase ABL1 H7C1H8_HUMAN_00526;ABL1_HUMAN_00730

5975 PAKAESKSFAVGM wildtype peptide Very long-chain specific acyl-CoA dehydrogenase, mitochondrial F5H2A9_HUMAN_00094;G3V1M7_HUMAN_00117 B4DEC3_HUMAN_00241;B4DW08_HUMAN_00231;A2A274_HUMAN_00545;F5H2A5_HUMAN_005 5976 LTGTDGKKFRLEA wildtype peptide Aconitate hydratase, mitochondrial 01 5977 TDYQMTKRDMGFT wildtype peptide Adenosine deaminase B0S7P1_HUMAN_00010;B0V072_HUMAN_00010;B0V073_HUMAN_00010;E9PIQ3_HUMAN_0001 5978 NVTPHNKLPGEGN wildtype peptide Bromodomain-containing protein 2 0;E9PKQ9_HUMAN_00010;BRD2_HUMAN_00010 5979 RVGGALKAPSQNR wildtype peptide Mitotic checkpoint serine/threonine-protein kinase BUB1 beta C9JLW5_HUMAN_00196;BUB1B_HUMAN_00196;BUB1B_HUMAN_00264 5980 KDVYALKKPYGVL wildtype peptide Ribosome production factor 2 homolog 5981 TLSFVGKRRGGNK wildtype peptide Uncharacterized protein C19orf43 5982 KKKKKGKEEEEKA wildtype peptide Rab-like protein 1 G8JLF3_HUMAN_00547;RBEL1_HUMAN_00663 5983 FYGDEEKDKGLQT wildtype peptide Calreticulin