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Training Manual Series No.15/2018
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CMFRI Digital Repository DBTR-H D Indian Council of Agricultural Research Ministry of Science and Technology Central Marine Fisheries Research Institute Department of Biotechnology CMFRI Training Manual Series No.15/2018 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual This is a limited edition of the CMFRI Training Manual provided to participants of the “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals” organized by the Marine Biotechnology Division of Central Marine Fisheries Research Institute (CMFRI), from 2nd February 2015 - 31st March 2018. Principal Investigator Dr. P. Vijayagopal Compiled & Edited by Dr. P. Vijayagopal Dr. Reynold Peter Assisted by Aditya Prabhakar Swetha Dhamodharan P V ISBN 978-93-82263-24-1 CMFRI Training Manual Series No.15/2018 Published by Dr A Gopalakrishnan Director, Central Marine Fisheries Research Institute (ICAR-CMFRI) Central Marine Fisheries Research Institute PB.No:1603, Ernakulam North P.O, Kochi-682018, India. 2 Foreword Central Marine Fisheries Research Institute (CMFRI), Kochi along with CIFE, Mumbai and CIFA, Bhubaneswar within the Indian Council of Agricultural Research (ICAR) and Department of Biotechnology of Government of India organized a series of training programs entitled “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals”. -
ASFIS ISSCAAP Fish List February 2007 Sorted on Scientific Name
ASFIS ISSCAAP Fish List Sorted on Scientific Name February 2007 Scientific name English Name French name Spanish Name Code Abalistes stellaris (Bloch & Schneider 1801) Starry triggerfish AJS Abbottina rivularis (Basilewsky 1855) Chinese false gudgeon ABB Ablabys binotatus (Peters 1855) Redskinfish ABW Ablennes hians (Valenciennes 1846) Flat needlefish Orphie plate Agujón sable BAF Aborichthys elongatus Hora 1921 ABE Abralia andamanika Goodrich 1898 BLK Abralia veranyi (Rüppell 1844) Verany's enope squid Encornet de Verany Enoploluria de Verany BLJ Abraliopsis pfefferi (Verany 1837) Pfeffer's enope squid Encornet de Pfeffer Enoploluria de Pfeffer BJF Abramis brama (Linnaeus 1758) Freshwater bream Brème d'eau douce Brema común FBM Abramis spp Freshwater breams nei Brèmes d'eau douce nca Bremas nep FBR Abramites eques (Steindachner 1878) ABQ Abudefduf luridus (Cuvier 1830) Canary damsel AUU Abudefduf saxatilis (Linnaeus 1758) Sergeant-major ABU Abyssobrotula galatheae Nielsen 1977 OAG Abyssocottus elochini Taliev 1955 AEZ Abythites lepidogenys (Smith & Radcliffe 1913) AHD Acanella spp Branched bamboo coral KQL Acanthacaris caeca (A. Milne Edwards 1881) Atlantic deep-sea lobster Langoustine arganelle Cigala de fondo NTK Acanthacaris tenuimana Bate 1888 Prickly deep-sea lobster Langoustine spinuleuse Cigala raspa NHI Acanthalburnus microlepis (De Filippi 1861) Blackbrow bleak AHL Acanthaphritis barbata (Okamura & Kishida 1963) NHT Acantharchus pomotis (Baird 1855) Mud sunfish AKP Acanthaxius caespitosa (Squires 1979) Deepwater mud lobster Langouste -
The Living Planet Index (Lpi) for Migratory Freshwater Fish Technical Report
THE LIVING PLANET INDEX (LPI) FOR MIGRATORY FRESHWATER FISH LIVING PLANET INDEX TECHNICAL1 REPORT LIVING PLANET INDEXTECHNICAL REPORT ACKNOWLEDGEMENTS We are very grateful to a number of individuals and organisations who have worked with the LPD and/or shared their data. A full list of all partners and collaborators can be found on the LPI website. 2 INDEX TABLE OF CONTENTS Stefanie Deinet1, Kate Scott-Gatty1, Hannah Rotton1, PREFERRED CITATION 2 1 1 Deinet, S., Scott-Gatty, K., Rotton, H., Twardek, W. M., William M. Twardek , Valentina Marconi , Louise McRae , 5 GLOSSARY Lee J. Baumgartner3, Kerry Brink4, Julie E. Claussen5, Marconi, V., McRae, L., Baumgartner, L. J., Brink, K., Steven J. Cooke2, William Darwall6, Britas Klemens Claussen, J. E., Cooke, S. J., Darwall, W., Eriksson, B. K., Garcia Eriksson7, Carlos Garcia de Leaniz8, Zeb Hogan9, Joshua de Leaniz, C., Hogan, Z., Royte, J., Silva, L. G. M., Thieme, 6 SUMMARY 10 11, 12 13 M. L., Tickner, D., Waldman, J., Wanningen, H., Weyl, O. L. Royte , Luiz G. M. Silva , Michele L. Thieme , David Tickner14, John Waldman15, 16, Herman Wanningen4, Olaf F., Berkhuysen, A. (2020) The Living Planet Index (LPI) for 8 INTRODUCTION L. F. Weyl17, 18 , and Arjan Berkhuysen4 migratory freshwater fish - Technical Report. World Fish Migration Foundation, The Netherlands. 1 Indicators & Assessments Unit, Institute of Zoology, Zoological Society 11 RESULTS AND DISCUSSION of London, United Kingdom Edited by Mark van Heukelum 11 Data set 2 Fish Ecology and Conservation Physiology Laboratory, Department of Design Shapeshifter.nl Biology and Institute of Environmental Science, Carleton University, Drawings Jeroen Helmer 12 Global trend Ottawa, ON, Canada 15 Tropical and temperate zones 3 Institute for Land, Water and Society, Charles Sturt University, Albury, Photography We gratefully acknowledge all of the 17 Regions New South Wales, Australia photographers who gave us permission 20 Migration categories 4 World Fish Migration Foundation, The Netherlands to use their photographic material. -
Miscellaneous Coastal Fishes Capture Production by Species, Fishing Areas
126 Miscellaneous coastal fishes Capture production by species, fishing areas and countries or areas B-33 Poissons côtiers divers Captures par espèces, zones de pêche et pays ou zones Peces costeros diversos Capturas por especies, áreas de pesca y países o áreas Species, Fishing area Espèce, Zone de pêche 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 Especie, Área de pesca t t t t t t t t t t Hagfish Myxine Pez moco Myxine glutinosa 1,03(03)003,01 MYG 27 Denmark - - - - - - - - 4 58 27 Fishing area total - - - - - - - - 4 58 Species total - - - - - - - - 4 58 Broadgilled hagfish ...B ...C Eptatretus cirrhatus 1,03(03)006,03 MWC 81 New Zealand 508 347 364 1 142 307 114 144 371 247 106 81 Fishing area total 508 347 364 1 142 307 114 144 371 247 106 Species total 508 347 364 1 142 307 114 144 371 247 106 Hagfishes nei Mixynes nca Mixinos nep Myxinidae 1,03(03)XXX,XX MYX 21 USA 992 1 954 1 853 925 ... 782 1 246 894 1 000 849 21 Fishing area total 992 1 954 1 853 925 ... 782 1 246 894 1 000 849 61 Korea Rep 29 37 18 15 23 43 25 61 80 82 61 Fishing area total 29 37 18 15 23 43 25 61 80 82 67 USA 990 1 481 1 184 1 725 1 750 2 110 2 502 1 708 1 339 1 208 67 Fishing area total 990 1 481 1 184 1 725 1 750 2 110 2 502 1 708 1 339 1 208 77 USA 302 416 497 198 194 241 360 405 469 508 77 Fishing area total 302 416 497 198 194 241 360 405 469 508 Species total 2 313 3 888 3 552 2 863 1 967 3 176 4 133 3 068 2 888 2 647 Ladyfish Guinée-machète Malacho Elops saurus 1,29(01)003,02 LAD 21 USA 0 0 - - - 0 1 1 1 1 21 Fishing area total 0 0 - - - 0 1 1 1 1 31 Colombia 10 F 16 F 22 30 18 18 42 .. -
Level 2 Ecological Risk Assessment East Coast Inshore Fishery – Large Mesh Nets Target & Byproduct Species
Level 2 Ecological Risk Assessment East Coast Inshore Fishery – Large Mesh Nets Target & Byproduct Species Level 2 Ecological Risk Assessment East Coast Inshore Fishery – Large Mesh Nets Target & Byproduct Species Alice Pidd, Ian Jacobsen, Lisa Walton & Ashley Lawson Fisheries Queensland, Department of Agriculture & Fisheries. This publication has been compiled by A. Pidd, I. Jacobsen, L. Walton and A. Lawson of Fisheries Queensland, Department of Agriculture and Fisheries Enquiries and feedback regarding this document can be made as follows: Email: [email protected] Telephone: 13 25 23 (Queensland callers only) (07) 3404 6999 (outside Queensland) Monday, Tuesday, Wednesday and Friday: 8 am to 5 pm, Thursday: 9 am to 5 pm Post: Department of Agriculture and Fisheries GPO Box 46 BRISBANE QLD 4001 AUSTRALIA Website: daf.qld.gov.au Interpreter statement The Queensland Government is committed to providing accessible services to Queenslanders from all culturally and linguistically diverse backgrounds. If you need an interpreter to help you understand this document, call 13 25 23 or visit daf.qld.gov.au and search for ‘interpreter’. © State of Queensland, 2021. The Queensland Government supports and encourages the dissemination and exchange of its information. The copyright in this publication is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) licence. Under this licence you are free, without having to seek our permission, to use this publication in accordance with the licence terms. You must keep intact the copyright notice and attribute the State of Queensland as the source of the publication. Note: Some content in this publication may have different licence terms as indicated. -
De Vertebrados De Moçambique Checklist of Vertebrates of Mozambique
‘Checklist’ de Vertebrados de Moçambique Checklist of Vertebrates of Mozambique Michael F. Schneider*, Victorino A. Buramuge, Luís Aliasse & Filipa Serfontein * autor para a correspondência – author for correspondence [email protected] Universidade Eduardo Mondlane Faculdade de Agronomia e Engenharia Florestal Departamento de Engenharia Florestal Maputo, Moçambique Abril de 2005 financiado por – funded by IUCN Mozambique Fundo Para a Gestão dos Recursos Naturais e Ambiente (FGRNA) Projecto No 17/2004/FGRNA/PES/C2CICLO2 Índice – Table of Contents Abreviaturas – Abbreviations..............................................................................2 Nomes vernáculos – vernacular names: .............................................................3 Referências bibliográficas – Bibliographic References ......................................4 Checklist de Mamíferos- Checklist of Mammals ................................................5 Checklist de Aves- Checklist of Birds ..............................................................38 Checklist de Répteis- Checklist of Reptiles ....................................................102 Checklist de Anfíbios- Checklist of Amphibians............................................124 Checklist de Peixes- Checklist of Fish............................................................130 1 Abreviaturas - Abbreviations * espécie introduzida – introduced species ? ocorrência duvidosa – occurrence uncertain end. espécie endémica (só avaliada para mamíferos, aves e répteis) – endemic species (only -
Supplementary Information Doi: 10.1038/Nclimate1691
SUPPLEMENTARY INFORMATION DOI: 10.1038/NCLIMATE1691 Shrinking of fishes exacerbates impacts of global ocean changes on marine ecosystems Supplementary information Method Dynamic Bioclimate Envelope Model (DBEM) As a first step, we predicted the current (19702000) distribution map of each species an algorithm described in [1,2]. This algorithm estimates the relative abundance of a species on a 30’ latitude x 30’ longitude grid of the world ocean. Input parameters for DBEM include the species’ maximum and minimum depth limits, northern and southern latitudinal range limits, an index of association to major habitat types (seamounts, estuaries, inshore, offshore, continental shelf, continental slope and the abyssal) and known occurrence boundaries. The parameter values of each species, which are posted on the Sea Around Us Project website (http://www.seaaroundus.org/distribution/search.aspx), were derived from data in online databases, mainly FishBase (www.fishbase.org). Jones et al. 3 compared the predicted species distribution from this algorithm with empirically observed occurrence records and found that the algorithm has high predictive power, and that its skills are comparable with other commonly used species distribution modelling approach for marine species such as Maxent4 and Aquamap5. As a second step, we used DBEM to identify the ‘environmental preference profiles’ of the studied species, defined by outputs from the Earth System Models, including sea water temperature (bottom and surface), depth, salinity, distance from seaice and habitat types. Preference profiles are defined as the suitability of each of these environmental conditions to each species, with suitability calculated by overlaying environmental data (19702000) with maps of relative abundance of the species 6. -
POPULATION BIOLOGY of the GREENBACK GREY MULLET, Chelon Subviridis (Valenciennes, 1836) in MERBOK ESTUARY, KEDAH
POPULATION BIOLOGY OF THE GREENBACK GREY MULLET, Chelon subviridis (Valenciennes, 1836) IN MERBOK ESTUARY, KEDAH NOR AZIELLA BT MOHD ROSLI UNIVERSITI SAINS MALAYSIA 2012 POPULATION BIOLOGY OF THE GREENBACK GREY MULLET, Chelon subviridis (Valenciennes, 1836) IN MERBOK ESTUARY, KEDAH by NOR AZIELLA BT MOHD ROSLI Thesis submitted in fulfillment of the requirements for the degree of Master of Science DECEMBER 2012 ACKNOWLEDGEMENT Alhamdulillah, special praises to Allah S.W.T for helping me to finish my master research. I sincerely would like to express my special thanks to my supervisor, Dr. Mansor Mat Isa and my co-supervisor, Prof. Alexander Chong Shu Chien for the helpful advice, suggestion, encouragement and guidance throughout this research. I would like to acknowledge the staff of School of Biological Sciences; En. Nazri, En. Bahrim and Uncle Muthu. Without them, the research activities would never have been undertaken. Not forgotten my laboratory mates and those who helped me directly or indirectly, thanks for the assistances and encouragements. Grateful appreciation is extended to the Universiti Sains Malaysia through the Postgraduate Research Grants Scheme 1001/ Pbiologi/ 834096. Lastly, I express my heartfelt gratitude to my family, especially to my grandmother Hasmah Hussain, my mother Rahmoh Deraman and my father Mohd Rosli Abu Bakar for their blessing, support, constant inspiration and encouragement. Thank you very much. ii TABLE OF CONTENTS Content Page ACKNOWLEDGEMENT………………………………………………………. ii TABLE OF CONTENTS………………………………………………………... iii LIST OF TABLES……………………………………………………………….. viii LIST OF FIGURES……………………………………………………………… x LIST OF APPENDICES………………………………………………………… xiii LIST OF PUBLICATION………………………………………………………. xiv LIST OF SYMBOLS AND ABBREVIATIONS……………………………….. xv ABSTRAK………………………………………………………………………... xvii ABSTRACT……………………………………………………………………..... xix CHAPTER 1: GENERAL INTRODUCTION 1.1 General aspect of population biology…………………………………... -
FAMILY Mugilidae Jarocki 1822
FAMILY Mugilidae Jarocki 1822 - mullets, grey mullets [=Lepidopomes, Cyrtocephala, Mugiloides, Agonostominae, Mugiloididae, Cestraeinae, Myxinae] GENUS Agonostomus Bennett, 1832 - mullets [=Agonostoma, Nestis] Species Agonostomus catalai Pellegrin, 1932 - Comoro mullet Species Agonostomus telfairii Bennett, 1832 - fairy mullet [=cyprinoides, dobuloides] GENUS Aldrichetta Whitley, 1945 - yelloweye mullets, sand mullets Species Aldrichetta forsteri (Valenciennes, 1836) - yelloweye mullet [=albula, diemensis, lacustris, nonpilcharda, tasmanicus] GENUS Cestraeus Valenciennes, in Cuvier & Valenciennes, 1836 - river mullets [=Aeschrichthys, Gonostomyxus] Species Cestraeus goldiei (Macleay, 1883) - Goldie river mullet Species Cestraeus oxyrhyncus Valenciennes, in Cuvier & Valenciennes, 1836 - sharpnosed river mullet Species Cestraeus plicatilis Valenciennes, in Cuvier & Valenciennes, 1836 - lobed river mullet [=loaloa] GENUS Chaenomugil Gill, 1863 - snouted mullets Species Chaenomugil proboscideus (Gunther, 1861) - snouted mullet GENUS Chelon Artedi, in Rose, 1793 - mullets [=Heteromugil, Liza, Oxymugil, Protomugil, Pteromugil, Strializa] Species Chelon auratus (Risso, 1810) - golden grey mullet [=breviceps, cryptocheilos, lotreganus, maderensis] Species Chelon bandialensis (Diouf, 1991) - Diassanga mullet Species Chelon bispinosus (Bowdich, 1825) - Cape Verde mullet [=nigrostrigatus] Species Chelon carinatus (Valenciennes, in Cuvier & Valenciennes, 1836) - carinatus mullet Species Chelon dumerili (Steindachner, 1870) - grooved mullet [=canaliculatus, -
Annotated Checklist of the Fishes of Madagascar, Southwestern Indian Ocean, with 158 New Records
FishTaxa (2018) 3(1): 1-432 E-ISSN: 2458-942X Journal homepage: www.fishtaxa.com © 2018 FISHTAXA. All rights reserved Annotated checklist of the fishes of Madagascar, southwestern Indian Ocean, with 158 new records Ronald FRICKE*1, Jamal MAHAFINA2, Faustinato BEHIVOKE2, Henitsoa JAONALISON2, 3, Marc LÉOPOLD3, Dominique PONTON4 1Im Ramstal 76, 97922 Lauda-Königshofen, Germany. 2Institut Halieutique et des Sciences Marines, Jeune Équipe Associée à l’IRD ACOM, Université de Toliara, Route du Port Mahavatse II, Toliara 601, Madagascar. 3ENTROPIE, IRD-Université de La Réunion-CNRS, Laboratoire d’Excellence CORAIL, Institut Halieutique et des Sciences Marines, Route du Port Mahavatse II, Toliara 601, Madagascar . 4ENTROPIE, IRD-Université de La Réunion-CNRS, Laboratoire d’Excellence CORAIL, c/o Hydrô Réunion Station Marine, Port ouest, Magasin 10, 97420 Le Port, La Réunion, France. Corresponding author: *E-mail: [email protected] Abstract An annotated checklist of the fish species of the Madagascar EEZ (southwestern Indian Ocean) comprises a total of 1,798 species in 247 families. 158 species are recorded from Madagascar for the first time. The majority of the species is autochthonous; 28 species have been introduced, mainly in freshwater habitats. The fish fauna is mostly marine (95.4% of the total number of native fish species), with the Gobiidae, Labridae, Serranidae, Pomacentridae and Apogonidae being the families with most representatives; among the 90 native freshwater fish species (adults mainly occurring in freshwater), the Cichlidae are the dominating family, but there are also two endemic families, the Bedotiidae (16 species) and Anchariidae (6 species). The fish fauna at Madagascar is typical for offshore, high islands in the southwestern Indian Ocean. -
Supplementary Information
Supplementary Information Table S1. List of Mugilidae family taxonomic groups (genus), species and geographical distribution. Data was obtained from Fishbase 1, WoRMS 2, EOL 3 and ITIS 4 online databases. Genus Species Common Name Distribution A. catalai Comoro mullet West Indian Ocean (Madagascar and Comoro Islands) Agonostomus A. monticola Mountain mullet West Atlantic and Caribbean Sea (South USA to Colombia, Venezuela and West Indies) A. telfairii Fairy mullet West Indian Ocean (Madagascar, Reunión, Mauritius, Seychelles, Anjuan and Comoro Islands) Aldrichetta A. forsteri Yellow-eye mullet South-West Pacific (New Zealand, Chatham Islands, Australia and Tasmania) C. goldiei Goldie river mullet South-Asia and Oceania (South-Philippines and New Caledonia) Cestraeus C. oxyrhyncus Sharp-nose river mullet South-Asia and Oceania (East-Indonesia, Fiji; Philippines and New Caledonia) C. plicatilis Lobed river mullet South-Asia and Oceania (Celebes, New Caledonia, New Hebrides, and Fiji) Chaenomugil C. proboscideus Snouted mullet Eastern Central Pacific (Revillagigedo Islands and Mexico to Panama) C. bispinosus Cape Verde mullet Eastern Central Atlantic (Cape Verde) Chelon C. labrosus Thicklip grey mullet Eastern Atlantic (Scandinavia, to Senegal and Cape Verde). Mediterranean Sea, South-West Black Sea C. planiceps Tade gray mullet Indo-Pacific (Red Sea to Australia) C. crenilabis Fringelip mullet Indo-Pacific (Red Sea and East Africa to Japan and Lord Howe Island) Crenimugil C. heterocheilos Half fringelip mullet Indo-Pacific (Indonesia and Philippines to Vanuatu, Japanese Islands and New Caledonia Joturus J. pichardi Bobo mullet Central America (Florida, Mexico to Panama and the West Indies) Mar. Drugs 2014, 12 S2 Table S1. Cont. South-West Asia (Iran and Pakistan) L. -
Comparative Phylogeography of the Western Indian Ocean Reef Fauna
1 Acta Oecologica-international Journal Of Ecology Achimer April 2016, Volume 72 Pages 72-86 http://dx.doi.org/10.1016/j.actao.2015.10.009 http://archimer.ifremer.fr http://archimer.ifremer.fr/doc/00288/39919/ © 2015 Elsevier Masson SAS. All rights reserved. Comparative phylogeography of the western Indian Ocean reef fauna Borsa Philippe 1, 2, 8, 9, *, Durand Jean-Dominique 3, Chen Wei-Jen 4, Hubert Nicolas 5, Muths Delphine 6, 7, Mou-Tham Gerard 1, 2, Kulbicki Michel 1, 2 1 IRD, UMR EMTROPI, Noumea, New Caledonia. 2 LabEx Corail, Noumea, New Caledonia. 3 IRD, UMR MARBEC, Montpellier, France. 4 Natl Taiwan Univ, Inst Oceanog, Taipei 10764, Taiwan. 5 IRD, UMR ISEM, Montpellier, France. 6 IFREMER, Delegat Ocean Indien, Le Port, Reunion. 7 Univ Europeenne Bretagne, Rennes, France. 8 IRD UMR 250 EMTROPI, Jl Raya Sesetan Gang Markisa 6, Denpasar 80322, Indonesia. 9 Univ Udayana, LabEx Corail, Jl Raya Sesetan Gang Markisa 6, Denpasar 80322, Indonesia. * Corresponding author : Philippe Borsa, email address : [email protected]; jean- [email protected];;[email protected]; [email protected];;[email protected]; [email protected]; [email protected] Abstract : Assessing patterns of connectivity at the community and population levels is relevant to marine resource management and conservation. The present study reviews this issue with a focus on the western Indian Ocean (WIO) biogeographic province. This part of the Indian Ocean holds more species than expected from current models of global reef fish species richness. In this study, checklists of reef fish species were examined to determine levels of endemism in each of 10 biogeographic provinces of the Indian Ocean.