Growth Rates in Gulf of Mexico Red Snapper, Lutjanus Campechanus
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University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School 11-5-2014 Growth Rates in Gulf of Mexico Red Snapper, Lutjanus campechanus, Before and After the Deepwater Horizon Blowout Elizabeth Shea Herdter University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Marine Biology Commons, and the Oceanography Commons Scholar Commons Citation Herdter, Elizabeth Shea, "Growth Rates in Gulf of Mexico Red Snapper, Lutjanus campechanus, Before and After the Deepwater Horizon Blowout" (2014). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/5419 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Growth Rates in Gulf of Mexico Red Snapper, Lutjanus campechanus, Before and After the Deepwater Horizon Blowout by Elizabeth S. Herdter A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Steven A. Murawski, Ph.D. Don Chambers, Ph.D Susan Lowerre-Barbieri, Ph.D. Christopher Stallings, Ph.D. Date of Approval: November 5th, 2014 Keywords: Otolith, Oil Spill, Increment Width Analysis Copyright © 2014, Elizabeth S. Herdter DEDICATION For my mother and father who have made many sacrifices to see me succeed. ACKNOWLEDGMENTS This research was made possible in part by a grant from NOAA National Marine Fisheries Service “Systematic Survey of Finfish Disease Prevalence in the Gulf of Mexico” (#NA11NMF4720151), BP/The Gulf of Mexico Research Initiative, C-IMAGE, and the State of Louisiana. I thank my committee members, Dr. Steve Murawski, Dr. Don Chambers, Dr. Chris Stallings and Dr. Susan Lowerre-Barbieri for their guidance during this process. I send a special “Thank You” to my major advisor, Dr. Steve Murawski for believing in my abilities as a developing scientist and for growing the academic independence that I’ve gained in the past two years as his graduate student. Acknowledgments are due to Jessica Carroll, Alison Amick and Kristen Wolfgang at Florida Wildlife Research Institute for spending their work time to help in my training of otolith processing techniques as well as performing countless hours of quality control on my samples. I’d like to also acknowledge Drs. Ernst Peebles, David Jones, Ryan Takeshita and Claire Lay for their help with statistical methodology. A heartfelt thank you goes to the ladies of the Population and Marine Ecosystems lab and Sherryl Gilbert at USF. Without all of your friendships and support, academically and otherwise, my time at USF would not have been quite as wonderful as it has so far. And finally, a very special “Thank You” to my parents, William and Angela Herdter, for inspiring my love of science and learning at the tiniest of ages. Disclaimer: Data presented here may be subject to additional analysis and interpretation, which may include interpretation in the context of additional data not presented here. TABLE OF CONTENTS List of Tables ................................................................................................................................ iii List of Figures .............................................................................................................................. vii Abstract ............................................................................................................................................x Chapter One: Introduction ...............................................................................................................1 Red snapper Life History .....................................................................................................1 Otolith Formation and Growth.............................................................................................3 Otoliths as Investigative Tools.............................................................................................4 Effects of Oil on Fish Growth and Condition ......................................................................5 Objectives and Hypotheses ..................................................................................................6 Chapter Two:Methodology ..............................................................................................................8 Field Sampling .....................................................................................................................8 Otolith Processing and Age Analysis ................................................................................10 Increment Width Analysis .................................................................................................11 Data Analysis .....................................................................................................................12 Age and Length ......................................................................................................12 Model Fitting with Increment Width Data.............................................................13 Back-calculated Length and Weight Calculations ................................................16 Tables and Figures .............................................................................................................17 Chapter Three: Results ...................................................................................................................23 Age and Growth ................................................................................................................23 Model Selection with Environmental Covariates ..............................................................25 Back-calculated Length and Weight Estimates .................................................................27 Tables and Figures .............................................................................................................29 Chapter Four: Discussion ...............................................................................................................55 Red snapper Age Structure ................................................................................................55 Red snapper Growth ..........................................................................................................58 Variation in Age Specific Growth .....................................................................................59 Significance of Environmental Variables ..........................................................................60 Estimating Productivity Changes .......................................................................................61 Figures................................................................................................................................63 Chapter Five: Conclusions .............................................................................................................66 i References .....................................................................................................................................67 Appendix .......................................................................................................................................73 ii LIST OF TABLES Table 1: Coding scheme for identifying marginal increment completion in Red snapper otoliths sampled in the northern Gulf of Mexico during 2011-2013. ..........................17 Table 2: Numbers of Red snapper otoliths collected in the northern Gulf of Mexico and West Florida Shelf during 2011-2013 used for age, growth and increment width analyses. .............................................................................................................29 Table 3: Summary of age frequency data of Gulf of Mexico Red snapper collected in 2011-2013 ....................................................................................................................29 Table 4: Summary of fork length frequency data of Gulf of Mexico Red snapper collected in 2011-2013 .................................................................................................29 Table 5: Mean fork length at age of Red snapper collected in the Gulf of Mexico during 2011-2013 (n=799) ...........................................................................................30 Table 6: Estimated parameters from modeled von Bertalanffy growth functions of Gulf of Mexico Red snapper collected in 2011(n = 325), 2012(n = 388) and 2013(n = 107). The data were also combined to estimate one complete growth curve (n = 799) and separated by sex: female (n = 407) and male (n = 391) data sets................................................................................................................30 Table 7: Kimura likelihood ratio tests comparing the parameter estimates of von Bertalanffy growth curves estimated from Gulf of Mexico Red snapper collected in 2011 and 2012 ..........................................................................................30 Table 8: Kimura likelihood ratio tests comparing the parameter estimates of von Bertalanffy growth curves estimated from Gulf of Mexico Red snapper collected in 2012 and 2013 ..........................................................................................31