Extremotrophs, Extremophiles and Broadband Pigmentation Strategies in a High Arctic Ice Shelf Ecosystem

Total Page:16

File Type:pdf, Size:1020Kb

Extremotrophs, Extremophiles and Broadband Pigmentation Strategies in a High Arctic Ice Shelf Ecosystem FEMS Microbiology Ecology 53 (2005) 73–87 www.fems-microbiology.org Extremotrophs, extremophiles and broadband pigmentation strategies in a high arctic ice shelf ecosystem Derek R. Mueller a,*, Warwick F. Vincent a, Sylvia Bonilla a,b, Isabelle Laurion c a Centre dÕe´tudes nordiques et De´partement de biologie, Universite´ Laval, Pavillon Vachon, Quebec City, QC, Canada G1K 7P4 b Facultad de Ciencias, Universidad de la Repu´blica, Montevideo, Uruguay c Institut national de la recherche scientifique, Centre Eau, Terre et Environnement, Quebec City QC, Canada Received 30 June 2004; received in revised form 5 November 2004; accepted 5 November 2004 First published online 23 November 2004 Abstract Remnant ice shelves along the northern coast of Ellesmere Island, Nunavut, Canada (83°N) provide a habitat for cryo-tolerant microbial mat communities. Bioassays of bacterial and primary production were undertaken to quantify the short-term physiolog- ical response of the mats to changes in key variables that characterize this cryo-ecosystem (salinity, irradiance and temperature). The heterotrophic versus autotrophic community responses to these stressors differed markedly. The heterotrophic bacteria were extrem- ophilic and specifically adapted to ambient conditions on the ice shelf, whereas the autotrophic community had broader tolerance ranges and optima outside the ambient range. This latter, extremotrophic response may be partly due to a diverse suite of pigments including oligosaccharide mycosporine-like amino acids, scytonemins, carotenoids, phycobiliproteins and chlorophylls that absorb from the near UV-B to red wavelengths. These pigments provide a comprehensive broadband strategy for coping with the multiple stressors of high irradiance, variable salinity and low temperatures in this extreme cryo-environment. Ó 2004 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved. Keywords: Ice shelf; Microbial mats; Scytonemin; Oligosaccharide mycosporine-like amino acid; Productivity; Extremophile; Extremotroph 1. Introduction Phormidium, Leptolyngbya, Nostoc and Gloeocapsa) but also containing a wide variety of other taxa includ- Microbial phototrophs occur in a wide range of ice- ing viruses, heterotrophic bacteria, green micro-algae bound environments including sea ice, glaciers and snow and diatoms, as well as micro-invertebrates [2,3]. [1]. More recently, another type of cryo-ecosystem has Polar microbial mat communities retain a large over- been discovered in the North Polar Region. Similar to wintering biomass and then grow slowly during the brief their Southern Hemisphere equivalents, arctic ice shelves season of liquid water availability [4]. The micro-organ- provide an extreme habitat for microbiota. Microbial isms on the Ward Hunt Ice Shelf deal with a combina- mats constitute the dominant biomass on the Ward tion of physiological stresses imposed by their ambient Hunt Ice Shelf, High Arctic Canada (latitude 83°040N, environment, including cold temperatures (<5 °C), high longitude 74°250W). These are a complex microbial con- levels of solar radiation (including ultraviolet radiation) sortia dominated by cyanobacteria (notably the genera and 10-fold variations in salinity. The conjunction of these conditions makes arctic ice shelves an extreme ha- * bitat type, however the physiological optima and toler- Corresponding author. Tel.: +418 656 2131x8153; fax: +418 656 2043. ance ranges of Ôice-matÕ communities in relation to E-mail address: [email protected] (D.R. Mueller). these stressors have not been quantified. 0168-6496/$22.00 Ó 2004 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved. doi:10.1016/j.femsec.2004.11.001 74 D.R. Mueller et al. / FEMS Microbiology Ecology 53 (2005) 73–87 Many polar microbial mat cyanobacteria are cold- meltwater lakes (up to 15 km long, 3 m deep and tolerant (psychrotrophic) rather than cold-adapted (psy- 10–20 m wide), which run parallel to the Ellesmere Is- chrophilic) with their thermal optima for photosynthesis land coastline (Fig. 1). and growth lying well above their ambient range [5,6]. The distribution of microbial mats across the ice shelf By extension, polar phototrophs may respond to several is highly variable. Typically, microbial mats occur in aspects of their habitats in the same way, with tolerance conjunction with sparse sediment deposits either on to extremes in various environmental dimensions the ice surface or in discrete depressions in the ice sur- (extremotrophs) rather than adaptation towards opti- face termed cryoconite holes (approximately 7% cover; mal growth at or near the extreme conditions experi- D.R. Mueller, unpublished data). In certain areas, enced in situ (extremophiles). Microbial mats where sediment has been concentrated over time [12] elsewhere are known to reduce the effects of high ultra- microbial mats appear to be more developed and are rel- violet (UV) radiation with photo-protectants that atively abundant (18–31% cover over scales of hundreds quench free radicals or act as screening pigments [7,8]. of metres; D.R. Mueller, unpublished data). Polar microbial mats are simultaneously exposed to high Arctic ice shelf microbial mats are typically composed UV irradiances, high photosynthetically active radiation of small olive-green flakes or ÔmatletsÕ that accumulate (PAR) and low temperatures, leaving them particularly to a thickness of several millimetres to centimetres. In prone to photodamage [9], and suggesting that photo- more developed communities, the surface layer (100– protection may be especially important in these systems. 500 lm) is a conspicuous orange colour [3]. Aside from In this multi-stressor environment, a broadband pig- a surface layer, seen in developed communities and a ment strategy that efficiently reduces photodamage black, anoxic layer, observed in very thick sediments, might also free up resources for osmoregulation, thereby these microbial mats do not appear to be further strati- assisting in salinity, freeze–thaw and desiccation toler- fied as found in many microbial mats [13]. ance, and preventing serious damage when these other Microbial mats from northern ice shelves are sub- stressors inhibit metabolic activity and cellular repair jected to a variety of environmental stressors. Further- mechanisms. more, these stressors vary both temporally and The purpose of this paper is to evaluate the physio- spatially, necessitating physiological acclimation on sev- logical attributes of mats in the Ward Hunt Ice Shelf eral timescales. A pronounced seasonality at this high cryo-ecosystem and to address the question of how these latitude site causes gradual but extreme changes in light consortia respond to physical and chemical stresses in photoperiod (147 days of continuous darkness in winter their high arctic environment. These communities occur and 147 days of continuous light in summer) and irradi- today in the Arctic and Antarctica, but may have been ance (0–1200 lmol photons mÀ2 sÀ1 downwelling PAR), more widespread during periods of extreme cooling in temperature (average mat temperature = À8.6 °C, max- the past [10]. We first quantified the primary production imum = 1.7 °C, minimum = À15.7 °C; D.R. Mueller, and bacterial heterotrophic production of northern ice unpublished data from automated in situ dataloggers) shelf microbial mat consortia under representative and the availability of liquid water. mid-melt season conditions. We then addressed the During the summer months, the ice shelf environment hypothesis that these mats subsist in sub-optimal condi- is more dynamic due to temperature shifts across the tions by determining their metabolic response to short- freezing point of water. Microbial mats emerge sporad- term changes in light regime, temperature, salinity and ically from under melting snow and ice over the course hydration. We identified and quantified pigments of the summer months resulting in a 10-fold increase (including UV absorbing compounds, some of which in light levels. Periods of high irradiances due to low so- may be transparent in the PAR waveband) in these microbial mats, specifically chlorophylls, carotenoids, scytonemins and mycosporine-like amino acids (MAAs), to determine to what extent the potential for photoprotection exists within these communities. 2. Methods 2.1. Study site The Ward Hunt Ice Shelf is a 40 m thick free-float- ing mass of ice that accreted in situ over the last 4500 years [11]. The surface of the ice shelf is marked by a ridge and trough morphology that is associated with Fig. 1. Location of ice shelves in Nunavut, Canada. D.R. Mueller et al. / FEMS Microbiology Ecology 53 (2005) 73–87 75 lar angles and reflection from high albedo surfaces such ing sphere. The filters did not affect the spectral as snow and ice are punctuated by periods of intense fog distribution of light between 400 and 700 nm. The treat- in which ambient irradiances are much reduced. In ments reduced PAR levels to 0 (dark), 1%, 6%, 10% and spring, meltwater influx reduces the salinity of water 22%, 45% and 82% of ambient light. UV-A (320–400 that overlies the microbial mats, with conductivities nm) levels were 5%, 8%, 11%, 17%, 35% and 80% of ranging from fresh (0.5 mS cmÀ1) during periods of ambient and UV-B (300–320 nm, in this case) levels were open water to saline (>10 mS cmÀ1) during freeze-up. 26%, 28%, 34%, 36%, 42% and 85% of ambient light. During summer, in the absence of turbulent mixing, Samples were placed outside
Recommended publications
  • Investigating the Initial Steps in the Biosynthesis of Cyanobacterial Sunscreen Scytonemin
    Investigating the Initial Steps in the Biosynthesis of Cyanobacterial Sunscreen Scytonemin The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Balskus, Emily P., and Christopher T. Walsh. 2008. “Investigating the Initial Steps in the Biosynthesis of Cyanobacterial Sunscreen Scytonemin.” Journal of the American Chemical Society 130 (46) (November 19): 15260–15261. Published Version doi:10.1021/ja807192u Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:12153245 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Open Access Policy Articles, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#OAP NIH Public Access Author Manuscript J Am Chem Soc. Author manuscript; available in PMC 2009 November 19. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: J Am Chem Soc. 2008 November 19; 130(46): 15260±15261. doi:10.1021/ja807192u. Investigating the Initial Steps in the Biosynthesis of Cyanobacterial Sunscreen Scytonemin Emily P. Balskus and Christopher T. Walsh Contribution from the Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115 Photosynthetic cyanobacteria have evolved a variety of strategies for coping with exposure to damaging solar UV radiation,1 including DNA repair processes,2 UV avoidance behavior,3 and the synthesis of radiation-absorbing pigments.4 Scytonemin (1) is the most widespread and extensively characterized cyanobacterial sunscreen.5 This lipid soluble alkaloid accumulates in the extracellular sheaths of cyanobacteria upon exposure to UV-A light, where 6 it absorbs further incident radiation λmax = 384 nm).
    [Show full text]
  • Bacteria Increase Arid-Land Soil Surface Temperature Through the Production of Sunscreens
    Lawrence Berkeley National Laboratory Recent Work Title Bacteria increase arid-land soil surface temperature through the production of sunscreens. Permalink https://escholarship.org/uc/item/0gm2g8mx Journal Nature communications, 7(1) ISSN 2041-1723 Authors Couradeau, Estelle Karaoz, Ulas Lim, Hsiao Chien et al. Publication Date 2016-01-20 DOI 10.1038/ncomms10373 Peer reviewed eScholarship.org Powered by the California Digital Library University of California ARTICLE Received 9 Jun 2015 | Accepted 3 Dec 2015 | Published 20 Jan 2016 DOI: 10.1038/ncomms10373 OPEN Bacteria increase arid-land soil surface temperature through the production of sunscreens Estelle Couradeau1, Ulas Karaoz2, Hsiao Chien Lim2, Ulisses Nunes da Rocha2,w, Trent Northen3, Eoin Brodie2,4 & Ferran Garcia-Pichel1,3 Soil surface temperature, an important driver of terrestrial biogeochemical processes, depends strongly on soil albedo, which can be significantly modified by factors such as plant cover. In sparsely vegetated lands, the soil surface can be colonized by photosynthetic microbes that build biocrust communities. Here we use concurrent physical, biochemical and microbiological analyses to show that mature biocrusts can increase surface soil temperature by as much as 10 °C through the accumulation of large quantities of a secondary metabolite, the microbial sunscreen scytonemin, produced by a group of late-successional cyanobacteria. Scytonemin accumulation decreases soil albedo significantly. Such localized warming has apparent and immediate consequences for the soil microbiome, inducing the replacement of thermosensitive bacterial species with more thermotolerant forms. These results reveal that not only vegetation but also microorganisms are a factor in modifying terrestrial albedo, potentially impacting biosphere feedbacks on past and future climate, and call for a direct assessment of such effects at larger scales.
    [Show full text]
  • Thi Thu Tram NGUYEN
    ANNÉE 2014 THÈSE / UNIVERSITÉ DE RENNES 1 sous le sceau de l’Université Européenne de Bretagne pour le grade de DOCTEUR DE L’UNIVERSITÉ DE RENNES 1 Mention : Chimie Ecole doctorale Sciences De La Matière Thi Thu Tram NGUYEN Préparée dans l’unité de recherche UMR CNRS 6226 Equipe PNSCM (Produits Naturels Synthèses Chimie Médicinale) (Faculté de Pharmacie, Université de Rennes 1) Screening of Thèse soutenue à Rennes le 19 décembre 2014 mycosporine-like devant le jury composé de : compounds in the Marie-Dominique GALIBERT Professeur à l’Université de Rennes 1 / Examinateur Dermatocarpon genus. Holger THÜS Conservateur au Natural History Museum Londres / Phytochemical study Rapporteur Erwan AR GALL of the lichen Maître de conférences à l’Université de Bretagne Occidentale / Rapporteur Dermatocarpon luridum Kim Phi Phung NGUYEN Professeur à l’Université des sciences naturelles (With.) J.R. Laundon. d’Hô-Chi-Minh-Ville Vietnam / Examinateur Marylène CHOLLET-KRUGLER Maître de conférences à l’Université de Rennes1 / Co-directeur de thèse Joël BOUSTIE Professeur à l’Université de Rennes 1 / Directeur de thèse Remerciements En premier lieu, je tiens à remercier Monsieur le Dr Holger Thüs et Monsieur le Dr Erwan Ar Gall d’avoir accepté d’être les rapporteurs de mon manuscrit, ainsi que Madame la Professeure Marie-Dominique Galibert d’avoir accepté de participer à ce jury de thèse. J’exprime toute ma gratitude au Dr Marylène Chollet-Krugler pour avoir guidé mes pas dès les premiers jours et tout au long de ces trois années. Je la remercie particulièrement pour sa disponibilité et sa grande gentillesse, son écoute et sa patience.
    [Show full text]
  • Marine Natural Products: a Source of Novel Anticancer Drugs
    marine drugs Review Marine Natural Products: A Source of Novel Anticancer Drugs Shaden A. M. Khalifa 1,2, Nizar Elias 3, Mohamed A. Farag 4,5, Lei Chen 6, Aamer Saeed 7 , Mohamed-Elamir F. Hegazy 8,9, Moustafa S. Moustafa 10, Aida Abd El-Wahed 10, Saleh M. Al-Mousawi 10, Syed G. Musharraf 11, Fang-Rong Chang 12 , Arihiro Iwasaki 13 , Kiyotake Suenaga 13 , Muaaz Alajlani 14,15, Ulf Göransson 15 and Hesham R. El-Seedi 15,16,17,18,* 1 Clinical Research Centre, Karolinska University Hospital, Novum, 14157 Huddinge, Stockholm, Sweden 2 Department of Molecular Biosciences, the Wenner-Gren Institute, Stockholm University, SE 106 91 Stockholm, Sweden 3 Department of Laboratory Medicine, Faculty of Medicine, University of Kalamoon, P.O. Box 222 Dayr Atiyah, Syria 4 Pharmacognosy Department, College of Pharmacy, Cairo University, Kasr el Aini St., P.B. 11562 Cairo, Egypt 5 Department of Chemistry, School of Sciences & Engineering, The American University in Cairo, 11835 New Cairo, Egypt 6 College of Food Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China 7 Department of Chemitry, Quaid-i-Azam University, Islamabad 45320, Pakistan 8 Department of Pharmaceutical Biology, Institute of Pharmacy and Biochemistry, Johannes Gutenberg University, Staudingerweg 5, 55128 Mainz, Germany 9 Chemistry of Medicinal Plants Department, National Research Centre, 33 El-Bohouth St., Dokki, 12622 Giza, Egypt 10 Department of Chemistry, Faculty of Science, University of Kuwait, 13060 Safat, Kuwait 11 H.E.J. Research Institute of Chemistry,
    [Show full text]
  • Response of Desert Biological Soil Crusts to Alterations in Precipitation Frequency
    Oecologia (2004) 141: 306–316 DOI 10.1007/s00442-003-1438-6 PULSE EVENTS AND ARID ECOSYSTEMS Jayne Belnap . Susan L. Phillips . Mark E. Miller Response of desert biological soil crusts to alterations in precipitation frequency Received: 15 May 2003 / Accepted: 20 October 2003 / Published online: 19 December 2003 # Springer-Verlag 2003 Abstract Biological soil crusts, a community of cyano- treatment. The crusts dominated by the soil lichen bacteria, lichens, and mosses that live on the soil surface, Collema, being dark and protruding above the surface, occur in deserts throughout the world. They are a critical dried the most rapidly, followed by the dark surface component of desert ecosystems, as they are important cyanobacterial crusts (Nostoc-Scytonema-Microcoleus), contributors to soil fertility and stability. Future climate and then by the light cyanobacterial crusts (Microcoleus). scenarios predict alteration of the timing and amount of This order reflected the magnitude of the observed precipitation in desert environments. Because biological response: crusts dominated by the lichen Collema showed soil crust organisms are only metabolically active when the largest decline in quantum yield, chlorophyll a, and wet, and as soil surfaces dry quickly in deserts during late protective pigments; crusts dominated by Nostoc-Scytone- spring, summer, and early fall, the amount and timing of ma-Microcoleus showed an intermediate decline in these precipitation is likely to have significant impacts on the variables; and the crusts dominated by Microcoleus physiological functioning of these communities. Using the showed the least negative response. Most previous studies three dominant soil crust types found in the western of crust response to radiation stress have been short-term United States, we applied three levels of precipitation laboratory studies, where organisms were watered and frequency (50% below-average, average, and 50% above- kept under moderate temperatures.
    [Show full text]
  • Mutational Studies of Putative Biosynthetic Genes for the Cyanobacterial Sunscreen Scytonemin in Nostoc Punctiforme ATCC 29133
    fmicb-07-00735 May 14, 2016 Time: 12:18 # 1 View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by ASU Digital Repository ORIGINAL RESEARCH published: 18 May 2016 doi: 10.3389/fmicb.2016.00735 Mutational Studies of Putative Biosynthetic Genes for the Cyanobacterial Sunscreen Scytonemin in Nostoc punctiforme ATCC 29133 Daniela Ferreira and Ferran Garcia-Pichel* School of Life Sciences, Arizona State University, Tempe, AZ, USA The heterocyclic indole-alkaloid scytonemin is a sunscreen found exclusively among cyanobacteria. An 18-gene cluster is responsible for scytonemin production in Nostoc punctiforme ATCC 29133. The upstream genes scyABCDEF in the cluster are proposed to be responsible for scytonemin biosynthesis from aromatic amino acid substrates. In vitro studies of ScyA, ScyB, and ScyC proved that these enzymes indeed catalyze initial pathway reactions. Here we characterize the role of ScyD, ScyE, and ScyF, which were logically predicted to be responsible for late biosynthetic steps, in the biological context of N. punctiforme. In-frame deletion mutants of each were constructed Edited by: (1scyD, 1scyE, and 1scyF) and their phenotypes studied. Expectedly, 1scyE presents Martin G. Klotz, a scytoneminless phenotype, but no accumulation of the predicted intermediaries. City University of New York, USA Surprisingly, 1scyD retains scytonemin production, implying that it is not required Reviewed by: for biosynthesis. Indeed, scyD presents an interesting evolutionary paradox: it likely Rajesh P. Rastogi, Sardar Patel University, India originated in a duplication event from scyE, and unlike other genes in the operon, it has Iris Maldener, not been subjected to purifying selection.
    [Show full text]
  • Secondary Metabolites in Cyanobacteria
    Chapter 2 Secondary Metabolites in Cyanobacteria BethanBethan Kultschar Kultschar and Carole LlewellynCarole Llewellyn Additional information is available at the end of the chapter http://dx.doi.org/10.5772/intechopen.75648 Abstract Cyanobacteria are a diverse group of photosynthetic bacteria found in marine, fresh- water and terrestrial habitats. Secondary metabolites are produced by cyanobacteria enabling them to survive in a wide range of environments including those which are extreme. Often production of secondary metabolites is enhanced in response to abiotic or biotic stress factors. The structural diversity of secondary metabolites in cyanobacteria ranges from low molecular weight, for example, with the photoprotective mycosporine- like amino acids to more complex molecular structures found, for example, with cyano- toxins. Here a short overview on the main groups of secondary metabolites according to chemical structure and according to functionality. Secondary metabolites are intro- duced covering non-ribosomal peptides, polyketides, ribosomal peptides, alkaloids and isoprenoids. Functionality covers production of cyanotoxins, photoprotection and anti- oxidant activity. We conclude with a short introduction on how secondary metabolites from cyanobacteria are increasingly being sought by industry including their value for the pharmaceutical and cosmetics industries. Keywords: cyanobacteria, secondary metabolites, nonribosomal peptides, polyketides, alkaloids, isoprenoids, cyanotoxins, mycosporine-like amino acids, scytonemin, phycobiliproteins, biotechnology, pharmaceuticals, cosmetics 1. Introduction 1.1. Cyanobacteria Cyanobacteria are a diverse group of gram-negative photosynthetic prokaryotes. They are thought to be one of the oldest photosynthetic organisms creating the conditions that resulted in the evolution of aerobic metabolism and eukaryotic photosynthesis [1, 2]. They © 2016 The Author(s). Licensee InTech. This chapter is distributed under the terms of the Creative Commons © 2018 The Author(s).
    [Show full text]
  • Photoprotective and Biotechnological Potentials of Cyanobacterial Sheath Pigment, Scytonemin
    African Journal of Biotechnology Vol. 9(5), pp. 580-588, 1 February 2010 Available online at http://www.academicjournals.org/AJB ISSN 1684–5315 © 2010 Academic Journals Review Photoprotective and biotechnological potentials of cyanobacterial sheath pigment, scytonemin Shailendra P. Singh, Sunita Kumari, Rajesh P. Rastogi, Kanchan L. Singh, Richa and Rajeshwar P. Sinha* Laboratory of Photobiology and Molecular Microbiology, Centre of Advanced Study in Botany, Banaras Hindu University, Varanasi-221005 India. Accepted 28 December, 2009 Cyanobacteria are the main component of microbial populations fixing atmospheric nitrogen in aquatic as well as terrestrial ecosystems, especially in wetland rice-fields, where they significantly contribute to fertility as natural biofertilizers. Cyanobacteria require solar radiation as their primary source of energy to carry out both photosynthesis and nitrogen fixation. The stratospheric ozone depletion which has resulted in an increase in ultraviolet-B (UV-B; 280 - 315 nm) radiation on earth’s surface has been reported to inhibit a number of photochemical and photobiological processes in cyanobacteria. However, certain cyanobacteria have evolved mechanisms such as synthesis of photoprotective compound scytonemin and their derivatives to counteract the damaging effects of UV-B. In addition this compound has anti-inflammatory and anti-proliferative potentials. This review deals with the role of scytonemin as photoprotective compound and its pharmacological as well as biotechnological potentials. Key words: Cyanobacteria, biotechnology, ozone depletion, photoprotection, scytonemin, UV-B (280 - 315 nm) radiation. INTRODUCTION The continued depletion of stratospheric ozone layer due 1992; von der Gathen et al., 1995). Recent studies sug- to anthropogenically released atmospheric pollutants gested that for most of the world, the total column ozone such as chlorofluorocarbons (CFCs), chlorocarbons loss has not been recovered (Weatherhead and (CCs) and organo-bromides (OBS) has resulted in an in- Anderson, 2006).
    [Show full text]
  • A Novel Method to Evaluate Nutrient Retention by Biological Soil Crust Exopolymeric Matrix
    Lawrence Berkeley National Laboratory Recent Work Title A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix Permalink https://escholarship.org/uc/item/8068t8qp Journal Plant and Soil, 429(1-2) ISSN 0032-079X Authors Swenson, TL Couradeau, E Bowen, BP et al. Publication Date 2018-08-01 DOI 10.1007/s11104-017-3537-x Peer reviewed eScholarship.org Powered by the California Digital Library University of California Plant Soil https://doi.org/10.1007/s11104-017-3537-x REGULAR ARTICLE A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix Tami L. Swenson & Estelle Couradeau & Benjamin P. Bowen & Roberto De Philippis & Federico Rossi & Gianmarco Mugnai & Trent R. Northen Received: 6 October 2017 /Accepted: 14 December 2017 # Springer International Publishing AG, part of Springer Nature 2017 Abstract Methods We report new methods for the investigation Aims Biological soil crusts (biocrusts) are microbial of metabolite sorption on biocrusts compared to the communities commonly found in the upper layer of arid underlying unconsolidated subcrust fraction. A 13C–la- soils. These microorganisms release exopolysaccharides beled bacterial lysate metabolite mixture was incubated (EPS), which form the exopolymeric matrix (EPM), with biocrust, subcrust and biocrust-extracted EPS. allowing them to bond soil particles together and sur- Non-sorbed metabolites were extracted and analyzed vive long periods of dryness. The aim of this work is to by liquid chromatography/mass spectrometry. develop methods for measuring metabolite retention by Results This simple and rapid approach enabled the biocrust EPM and EPS. comparison of metabolite sorption on the biocrust EPM or EPS versus mineral sorption on the un- derlying soils.
    [Show full text]
  • Reproduction and Dispersal of Biological Soil Crust Organisms
    REVIEW published: 04 October 2019 doi: 10.3389/fevo.2019.00344 Reproduction and Dispersal of Biological Soil Crust Organisms Steven D. Warren 1*, Larry L. St. Clair 2,3, Lloyd R. Stark 4, Louise A. Lewis 5, Nuttapon Pombubpa 6, Tania Kurbessoian 6, Jason E. Stajich 6 and Zachary T. Aanderud 7 1 U.S. Forest Service, Rocky Mountain Research Station, Provo, UT, United States, 2 Department of Biology, Brigham Young University, Provo, UT, United States, 3 Monte Lafayette Bean Life Science Museum, Brigham Young University, Provo, UT, United States, 4 School of Life Sciences, University of Nevada, Las Vegas, NV, United States, 5 Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, United States, 6 Department of Microbiology and Plant Pathology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, CA, United States, 7 Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, United States Biological soil crusts (BSCs) consist of a diverse and highly integrated community of organisms that effectively colonize and collectively stabilize soil surfaces. BSCs vary in terms of soil chemistry and texture as well as the environmental parameters that combine to support unique combinations of organisms—including cyanobacteria dominated, lichen-dominated, and bryophyte-dominated crusts. The list of organismal groups that make up BSC communities in various and unique combinations include—free living, lichenized, and mycorrhizal fungi, chemoheterotrophic bacteria,
    [Show full text]
  • Indole Alkaloids Useful As Anti-Inflammatory Agents
    Europäisches Patentamt *EP000776204B1* (19) European Patent Office Office européen des brevets (11) EP 0 776 204 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.7: A61K 31/40, C07D 209/94, of the grant of the patent: A61P 29/00 27.11.2002 Bulletin 2002/48 (86) International application number: (21) Application number: 95928352.4 PCT/US95/10052 (22) Date of filing: 08.08.1995 (87) International publication number: WO 96/006607 (07.03.1996 Gazette 1996/11) (54) INDOLE ALKALOIDS USEFUL AS ANTI-INFLAMMATORY AGENTS INDOLALKALOIDE ALS ANTIENTZÜNDLICHE WIRKSTOFFE ALCALOIDES RENFERMANT DE L’INDOLE UTILES EN TANT QU ’AGENTS ANTI-INFLAMMATOIRES (84) Designated Contracting States: • GRACE, Krista J.S. AT BE CH DE DK ES FR GB GR IE IT LI LU MC NL Goleta, CA 93117 (US) PT SE • PROTEAU, Philip J. Murray, UT 84107 (US) (30) Priority: 29.08.1994 US 297022 • ROSSI, James Corvallis, OR 97333 (US) (43) Date of publication of application: 04.06.1997 Bulletin 1997/23 (74) Representative: Goldin, Douglas Michael et al J.A. KEMP & CO. (73) Proprietor: The Regents of the University of 14 South Square California Gray’s Inn Oakland, CA 94607-5200 (US) London WC1R 5JJ (GB) (72) Inventors: (56) References cited: • GERWICK, William H. • G.L. HELMS ET AL.: "Scytonemin A, a novel Corvallis, OR 97330 (US) calcium antagonist from a blue-green alga" J. • JACOBS, Robert S. ORGANIC CHEMISTRY, vol. 53, no. 6, 1988, Santa Barbara, CA 93101 (US) pages 1298-1307, XP002063613 • CASTENHOLZ, Richard • EXPERIENTIA, Volume 49, issued 1993, Elmira, OR 97437 (US) PROTEAU et al., "The Structure of Scytonemin, • GARCIA-PICHEL, Ferran an Ultraviolet Sunscreen Pigment from Sheaths 28359 Bremen (DE) of Cyanobacteria", pages 825-829.
    [Show full text]
  • Biosynthetic Investigations of Two Secondary Metabolites from the Marine Cyanobacterium Lyngbva Majuscula
    AN ABSTRACT OF THE THESIS OF James Rossi for the degree of Master of Science in Biochemistry and Biophysics presented on March 6, 1997. Title: Biosynthetic Investigations of Two Secondary Metabolites from the Marine Cyanobacterium Lyngbva majuscula Abstract appro Redacted for Privacy William H. Gerwick Marine cyanobacteria have been shown to produce a variety of biologically active and stucturally diverse secondary metabolites. These compounds are of interest to natural products researchers mainly because of their potential application as biomedicinals, biochemical probes, and agrichemicals. The metabolic pathways utilized by the cyanobacterium Lyngbya majuscula to generate curacin A, a potent antimitotic and its cometabolite, the molluscicidal barbamide, have been studied. Application of methods including radioisotope and stable isotope labeling have revealed the role of acetate and the amino acids methionine, valine, cysteine, and leucine as potential precursors in the biosynthesis of curacin and barbamide. An analytical technique based upon GC-EIMS methodology has also been developed to monitor the production levels of curacin A from cultures of Lyngbya majuscula with respect to growth. This method which makes use of the thiazole analog of curacin A, curazole as an internal standard, has also been preliminarily applied to the curacin A production in response to enviromental factors associated with changes in geographical locations at or near sites where the original collections of the cyanophyte were made in Curacao, Netherlands Antillies. This was performed by a series of transplantation experiments envolving high and trace curacin A producing strains of L. majuscula. Interest in the bioactive profile of curacin A prompted a pilot scale up of the cultured tissue for isolation of the metabolite.
    [Show full text]