Ecological Patterns of Chironomidae Assemblages in Dynaric Karst Springs
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Genomanalyse Von Prodiamesa Olivacea
Genomanalyse von Prodiamesa olivacea Dissertation zur Erlangung des Grades Doktor der Naturwissenschaften (Dr. rer. nat.) am Fachbereich Biologie der Johannes Gutenberg-Universität in Mainz Sarah Brunck geb. 08.08.1987 in Mainz Mainz, 2016 Dekan: 1. Berichterstatter: 2. Berichterstatter: Tag der mündlichen Prüfung: ii Inhaltsverzeichnis Inhaltsverzeichnis ................................................................................................................................ iii 1 Einleitung ........................................................................................................................................... 1 1.1 Die Familie der Chironomiden ................................................................................................. 1 1.1.1 Die Gattung Chironomus ..................................................................................................... 3 1.1.2 Die Gattung Prodiamesa ....................................................................................................... 6 1.2 Die Struktur von Insekten-Genomen am Beispiel der Chironomiden ............................... 9 1.2.1 Hochrepetitive DNA-Sequenzen ..................................................................................... 11 1.2.2 Mittelrepetitive DNA-Sequenzen bzw. Gen-Familien ................................................. 13 1.2.3 Gene und genregulatorische Sequenzen ........................................................................ 17 1.3 Zielsetzung ............................................................................................................................... -
Ohio EPA Macroinvertebrate Taxonomic Level December 2019 1 Table 1. Current Taxonomic Keys and the Level of Taxonomy Routinely U
Ohio EPA Macroinvertebrate Taxonomic Level December 2019 Table 1. Current taxonomic keys and the level of taxonomy routinely used by the Ohio EPA in streams and rivers for various macroinvertebrate taxonomic classifications. Genera that are reasonably considered to be monotypic in Ohio are also listed. Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Species Pennak 1989, Thorp & Rogers 2016 Porifera If no gemmules are present identify to family (Spongillidae). Genus Thorp & Rogers 2016 Cnidaria monotypic genera: Cordylophora caspia and Craspedacusta sowerbii Platyhelminthes Class (Turbellaria) Thorp & Rogers 2016 Nemertea Phylum (Nemertea) Thorp & Rogers 2016 Phylum (Nematomorpha) Thorp & Rogers 2016 Nematomorpha Paragordius varius monotypic genus Thorp & Rogers 2016 Genus Thorp & Rogers 2016 Ectoprocta monotypic genera: Cristatella mucedo, Hyalinella punctata, Lophopodella carteri, Paludicella articulata, Pectinatella magnifica, Pottsiella erecta Entoprocta Urnatella gracilis monotypic genus Thorp & Rogers 2016 Polychaeta Class (Polychaeta) Thorp & Rogers 2016 Annelida Oligochaeta Subclass (Oligochaeta) Thorp & Rogers 2016 Hirudinida Species Klemm 1982, Klemm et al. 2015 Anostraca Species Thorp & Rogers 2016 Species (Lynceus Laevicaudata Thorp & Rogers 2016 brachyurus) Spinicaudata Genus Thorp & Rogers 2016 Williams 1972, Thorp & Rogers Isopoda Genus 2016 Holsinger 1972, Thorp & Rogers Amphipoda Genus 2016 Gammaridae: Gammarus Species Holsinger 1972 Crustacea monotypic genera: Apocorophium lacustre, Echinogammarus ischnus, Synurella dentata Species (Taphromysis Mysida Thorp & Rogers 2016 louisianae) Crocker & Barr 1968; Jezerinac 1993, 1995; Jezerinac & Thoma 1984; Taylor 2000; Thoma et al. Cambaridae Species 2005; Thoma & Stocker 2009; Crandall & De Grave 2017; Glon et al. 2018 Species (Palaemon Pennak 1989, Palaemonidae kadiakensis) Thorp & Rogers 2016 1 Ohio EPA Macroinvertebrate Taxonomic Level December 2019 Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Informal grouping of the Arachnida Hydrachnidia Smith 2001 water mites Genus Morse et al. -
DNA Barcoding
Full-time PhD studies of Ecology and Environmental Protection Piotr Gadawski Species diversity and origin of non-biting midges (Chironomidae) from a geologically young lake PhD Thesis and its old spring system Performed in Department of Invertebrate Zoology and Hydrobiology in Institute of Ecology and Environmental Protection Różnorodność gatunkowa i pochodzenie fauny Supervisor: ochotkowatych (Chironomidae) z geologicznie Prof. dr hab. Michał Grabowski młodego jeziora i starego systemu źródlisk Auxiliary supervisor: Dr. Matteo Montagna, Assoc. Prof. Łódź, 2020 Łódź, 2020 Table of contents Acknowledgements ..........................................................................................................3 Summary ...........................................................................................................................4 General introduction .........................................................................................................6 Skadar Lake ...................................................................................................................7 Chironomidae ..............................................................................................................10 Species concept and integrative taxonomy .................................................................12 DNA barcoding ...........................................................................................................14 Chapter I. First insight into the diversity and ecology of non-biting midges (Diptera: Chironomidae) -
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Justin Peyton MS Graduate Program in Evolution, Ecology and Organismal Biology The Ohio State University 2015 Dissertation Committee: Professor David L. Denlinger Advisor Professor Zakee L. Sabree Professor Amanda A. Simcox Professor Joseph B. Williams Copyright by Justin Tyler Peyton 2015 Abstract As ectotherms with high surface area to volume ratio, insects are particularly susceptible to desiccation and low temperature stress. In this dissertation, I examine the molecular underpinnings of two facets of these stresses: rapid cold hardening and cryoprotective dehydration. Rapid cold hardening (RCH) is an insect’s ability to prepare for cold stress when that stress is preceded by an intermediate temperature for minutes to hours. In order to gain a better understanding of cold shock, recovery from cold shock, and RCH in Sarcophaga bullata I examine the transcriptome with microarray and the metabolome with gas chromatography coupled with mass spectrometry (GCMS) in response to these treatments. I found that RCH has very little effect on the transcriptome, but results in a shift from aerobic metabolism to glycolysis/gluconeogenesis during RCH and preserved metabolic homeostasis during recovery. In cryoprotective dehydration (CD), a moisture gradient is established between external ice and the moisture in the body of an insect. As temperatures decline, the external ice crystals grow, drawing in more moisture which dehydrates the insect causing its melting point to track the ambient temperature. To gain a better understanding of CD and dehydration in Belgica antarctica I explore the transcriptome with RNA sequencing ii and the metabolome with GCMS. -
National Park Service
Communities in Freshwater Coastal Rock Pools of Lake Superior, with a Focus on Chironomidae (Diptera) A Dissertation SUBMITTED TO THE FACULTY OF UNIVERSITY OF MINNESOTA BY Alexander Taurus Egan IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY Advisor: Leonard C. Ferrington, Jr. May 2014 © Alexander Taurus Egan 2014 Acknowledgements Projects of this size are rarely accomplished without the assistance and support of many people. Primarily, my advisor, Len Ferrington, has been a great source of guidance and enthusiasm. My committee, Jacques Finlay, Ralph Holzenthal, and Roger Moon, have raised the bar considerably by pushing, pulling and steering me toward being a better scientist. Friends and colleagues in the Chironomidae Research Group have made my graduate experience a time I will remember fondly, with Alyssa Anderson, Will Bouchard and Jessica Miller sharing in the successes, misfortunes, and minor but important goals that come with the territory. In particular, Petra Kranzfelder often filled the roles of peer advisor and sounding board for ideas both brilliant and ridiculous. The National Park service has been very generous in many ways, and specific thanks go to Brenda Moraska Lafrançois and Jay Glase, who provided early development and direction for this project. My colleagues Mark Edlund from the Science Museum of Minnesota and Toben Lafrançois from the Science Museum and Northland College have consistently offered excellent ecological advice on what the data mean, often acting as de facto advisors. Without support from Isle Royale National Park this project would not have been possible. In particular, the technical advice, equipment loans, and logistical assistance from Paul Brown, Rick Damstra, Joan Elias, and Mark Romanski were invaluable. -
SPIXIANA ©Zoologische Staatssammlung München;Download: Compteromesa Saether, 1981: 193
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Spixiana, Zeitschrift für Zoologie, Supplement Jahr/Year: 1984 Band/Volume: 011 Autor(en)/Author(s): Saether Ole A. Artikel/Article: The females of Compteromesa oconeensis Saether, 1981, and Prodiamesa olivacea (Meigen, 1818) (syn. Trichodiamesaautumnalis Goetghebuer, 1926, n. syn.) (Diptera, Chironomidae, Prodiamesinae) 7-13 ©Zoologische Staatssammlung München;download: http://www.biodiversitylibrary.org/; www.biologiezentrum.at SPIXIANA ©Zoologische Staatssammlung München;download: http://www.biodiversitylibrary.org/; www.biologiezentrum.at Compteromesa Saether, 1981: 193 Generic diagnosis Male imago as in Saether (1981 : 194). (In additon the distinct elongate humeral pit shown in the fe- male (Fig. 1 A) also is present in the male, but was not visible in the holotype in which the scutum was mounted in dorsal view. Also MCu is more variable making the distance at which it reaches M basad of RM sometimes slightly longer, sometimes slightly shorter than its own length.) Female imago as in male with the following exceptions and additions: Antenna with 6 flagellomeres, pedicel with 2 setae, flagellomeres 1-5 each with 1 pair of sensilla chaetica, flagellomere 6 with about 20 sensilla chaetica. Frontal setae occasionally present. Palp with 7-8 sensilla clavata at apex of third segment. Coronal suture incomplete. Wing membrane with nume- rous setae; setae present in most cells, also in cell r and in cell m basad of MCu. Several relatively long but thin sensilla chaetica present in basal third of bind metatarsus. Gonocoxite very large and rounded, with several setae. Tergite IX rather weak, divided, with setae; with a median weak triangulär anal po- int with a few setae. -
Appendices Include ICRMP? Comment Involved in the Management ….” Management the in Involved TNARNG
APPENDIX A ENVIRONMENTAL ASSESSMENT FOR THE IMPLEMENTATION OF THE REVISED INTEGRATED NATURAL RESOURCES MANAGEMENT PLAN FOR THE VOLUNTEER TRAINING SITE – CATOOSA TENNESSEE ARMY NATIONAL GUARD CATOOSA COUNTY, GEORGIA PREPARED BY Tennessee Military Department Environmental Office February 2012 Integrated Natural Resources Management Plan A-1 VTS-Catoosa Appendix A Environmental Assessment This page intentionally left blank. Integrated Natural Resources Management Plan A-2 VTS-Catoosa Appendix A Environmental Assessment ENVIRONMENTAL ASSESSMENT FOR IMPLEMENTATION OF THE REVISED INTEGRATED NATURAL RESOURCES MANAGEMENT PLAN, VOLUNTEER TRAINING SITE CATOOSA TENNESSEE ARMY NATIONAL GUARD REVIEWED BY: DATE: __________________________________________ ________________________ TERRY M. HASTON MG, TNARNG The Adjutant General __________________________________________ ________________________ ISAAC G. OSBORNE, JR. BG, TNARNG Assistant Adjutant General, Army __________________________________________ ________________________ DARRELL D. DARNBUSH COL, TNARNG Deputy Chief of Staff, Operations __________________________________________ ________________________ GARY B. HERR LTC, TNARNG Training Site Commander _________________________________________ ________________________ STEPHEN B. LONDON COL, TNARNG Environmental Officer Integrated Natural Resources Management Plan A-3 VTS-Catoosa Appendix A Environmental Assessment Integrated Natural Resources Management Plan A-4 VTS-Catoosa Appendix A Environmental Assessment TABLE OF CONTENTS Table of Contents A-5 -
DNA Metabarcoding Reveals the Complex and Hidden Responses of Chironomids to Multiple Stressors Arne J
Beermann et al. Environ Sci Eur (2018) 30:26 https://doi.org/10.1186/s12302-018-0157-x RESEARCH Open Access DNA metabarcoding reveals the complex and hidden responses of chironomids to multiple stressors Arne J. Beermann1,2*, Vera M. A. Zizka1,2, Vasco Elbrecht1,2,3, Viktor Baranov4 and Florian Leese1,2 Abstract Background: Chironomids, or non-biting midges, often dominate stream invertebrate communities in terms of biomass, abundance, and species richness and play an important role in riverine food webs. Despite these clear facts, the insect family Chironomidae is often treated as a single family in ecological studies or bioassessments given the difculty to determine specimens further. We investigated stressor responses of single chironomid operational taxonomic units (OTUs) to three globally important stressors (increased salinity, fne sediment and reduced water fow velocity) in a highly replicated mesocosm experiment using a full-factorial design (eight treatment combinations with eight replicates each). Results: In total, 183 chironomid OTUs (97% similarity) were obtained by applying a quantitative DNA metabarcod- ing approach. Whereas on the typically applied family level, chironomids responded positively to added fne sediment and reduced water velocity in the streambed and negatively to reduced velocity in the leaf litter, an OTU-level analysis revealed a total of 15 diferent response patterns among the 35 most common OTUs only. The response patterns ranged from (a) insensitivity to any experimental manipulation over (b) highly specifc sensitivities to only one stressor to (c) additive multiple-stressor efects and even (d) complex interactions. Conclusion: Even though most OTUs (> 85%) could not be assigned to a formally described species due to a lack of accurate reference data bases at present, the results indicate increased explanatory power with higher taxonomic resolution. -
An Updated List of Chironomid Species from Italy with Biogeographic Considerations (Diptera, Chironomidae)
Biogeographia – The Journal of Integrative Biogeography 34 (2019): 59–85 An updated list of chironomid species from Italy with biogeographic considerations (Diptera, Chironomidae) BRUNO ROSSARO1, NICCOLÒ PIROLA1, LAURA MARZIALI2, GIULIA MAGOGA1, ANGELA BOGGERO3, MATTEO MONTAGNA1 1 Dipartimento di Scienze Agrarie e Ambientali (DiSAA), University of Milano, Via Celoria 2, 20133 Milano (Italy) 2 Water Research Institute - National Research Council (IRSA-CNR), Via del Mulino 19, 20861 Brugherio (MB) (Italy) 3 Water Research Institute - National Research Council (IRSA-CNR), Corso Tonolli 50, 28922 Verbania Pallanza (Italy) * corresponding author: [email protected] Keywords: biodiversity, checklist, faunistics, freshwaters, non-biting midges, species list. SUMMARY In a first list of chironomid species from Italy from 1988, 359 species were recognized. The subfamilies represented were Tanypodinae, Diamesinae, Prodiamesinae, Orthocladiinae and Chironominae. Most of the species were cited as widely distributed in the Palearctic region with few Mediterranean (6), Afrotropical (19) or Panpaleotropical (3) species. The list also included five species previously considered Nearctic. An updated list was thereafter prepared and the number of species raised to 391. Species new to science were added in the following years further raising the number of known species. The list of species known to occur in Italy is now updated to 580, and supported by voucher specimens. Most species have a Palearctic distribution, but many species are distributed in other biogeographical regions; 366 species are in common with the East Palaearctic region, 281 with the Near East, 248 with North Africa, 213 with the Nearctic, 104 with the Oriental, 23 species with the Neotropical, 23 with the Afrotropical, 16 with the Australian region, and 46 species at present are known to occur only in Italy. -
Diptera) from Albania with First Records for the Balkan Peninsula
Zootaxa 4563 (2): 361–371 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2019 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4563.2.9 http://zoobank.org/urn:lsid:zoobank.org:pub:4C5B5B22-7E5C-4B2B-9CC7-3091310E0769 A preliminary checklist of Chironomidae (Diptera) from Albania with first records for the Balkan Peninsula PETER BITUŠÍK & KATARÍNA TRNKOVÁ Faculty of Natural Sciences, Matej Bel University, Tajovsky street 40, 974 01 Banska Bystrica, Slovakia. E-mail: [email protected] Abstract The Chironomidae of Albania have so far received limited attention and only 39 species have been recorded prior to the present study. Here we bring the results of random and non-intensive samplings of chironomid pupal exuviae and adults, at five localities in 2012, that provided 55 species and 5 additional taxa, with 51 being new for the Albanian fauna, out of which 7 were new for the Balkan Peninsula. In addition to that, we present a preliminary checklist of Chironomidae based on the data from Fauna Europaea complemented by the results of the recent investigation. The catalogued fauna now con- tains 85 species in 44 genera and 6 sub-families. Key words: Non-biting midges, flowing waters, Lake Ohrid, adults, exuviae, Hellenic West Balkan Introduction The Chironomidae family is the most ubiquitous insect group known from all zoogeographic regions and all climatic zones from the tropics to the Polar Regions. From the estimated more than 10,000 species worldwide (Cranston 1995), nearly 1300 species have been recorded in Europe (Spies & Sæther 2013), however the knowledge on the chironomid fauna in different European countries varies considerably. -
Università Degli Studi Di Trieste Xxxii Ciclo Del Dottorato Di Ricerca
UNIVERSITÀ DEGLI STUDI DI TRIESTE XXXII CICLO DEL DOTTORATO DI RICERCA IN AMBIENTE E VITA UNIVERSITÀ DEGLI STUDI DI TRIESTE XXXII CICLO DEL DOTTORATO DI RICERCA IN ALPINE LAKES, INDICATORSAMBIENT OF GLOBALE E VITA CHANGE: ECOLOGICAL CHARACTERIZATION AND ENVIRONMENTALALPINE PRESSURES LAKES, IN TWO LAKES INDICATORS OF GLOBAL CHANGE: FROM ITALIAN ALPS ECOLOGICAL CHARACTERIZATION AND ENVIRONMENTALSettore scientifico-disciplinare PRESSURES: BIO/07 - ECOLOG IN TWOIA LAKES FROM ITALIAN ALPS Settore scientifico-disciplinare: BIO/07 - ECOLOGIA DOTTORANDO PAOLODOTTORANDO PASTORINO PAOLO PASTORINO COORDINATORECOORDINATORE PROF. PROF.GIORGIO GIORGIO ALBERTI ALBERTI SUPERVISORE DI TESI SUPERVISOREPROF. PIERO DI GIUTESILIO GIULIANINI PROF. PIERO GIULIO GIULIANINI CO-SUPERVISORI DI TESI PROF.SSA ELISABETTA PIZZUL CO-SUPERVISORDR. MARINO IPREARO DI TESI PROF.SSA ELISABETTA PIZZUL DR. MARINO PREARO ANNO ACCADEMICO 2018/2019 ANNO ACCADEMICO 2018/2019 TABLE OF CONTENTS ABSTRACT 1 1. INTRODUCTION 3 1.1 Alpine lakes, climate changes and anthropogenic impacts 3 1.1.1 Climate change 4 1.1.2 Introduction of alien species in freshwater ecosystems 5 1.1.2.1 Introduction of fish in fishless Alpine lakes 7 1.1.3 Contaminants input and Alpine lakes 9 1.1.3.1 Trace elements in aquatic ecosystems and associated risks to fish consumption 10 1.2 Aims and objectives of the PhD project 12 2. STUDY AREAS 13 2.1 Dimon Lake 13 2.2 Balma Lake 14 3. COMPLETE 3D RECONSTRUCTION OF THE EXTERNAL AND SUBMERGED DIGITAL TERRAIN MODEL OF THE LAKES 16 3.1 Preface 16 3.2 Material and Methods 17 3.3 Results 21 4. SELECTION OF SAMPLING SITES 24 5. HYDROCHEMISTRY, SEDIMENT CORE CHEMISTRY AND DATING 30 5.1 Preface 30 5.2 Material and Methods 31 5.3 Results 33 5.4 Discussion 40 6. -
Desiccation Resistance of Chironomid Larvae
European Journal of Environmental Sciences 31 DESICCATION RESISTANCE OF CHIRONOMID LARVAE JAN FROUZ1,* and JOSEF MATĚNA2 1 CAS, Biology Centre, Inst. of Soil Biology, Na Sádkách 7, České Budějovice, CZ37005, Czech Republic 2 CAS, Biology Centre, Hydrobiological Inst., Na Sádkách 7, České Budějovice, CZ37005, Czech Republic * Corresponding author: [email protected] ABSTRACT Resistance to desiccation in larvae of eight species of aquatic, semiaquatic and terrestrial chironomids (Pseudodiamesa branickii, Macropelopia sp., Prodiamesa olivacea, Micropsectra sp., Chironomus riparius, Chironomus dorsalis, Metriocnemus martini and Camptocladius stercorarius) was studied. The larvae were desiccated in exicator at constant conditions (15 °C, 80% RH) and changes in moisture and body water content was recorded. The LD-50 for loss of body water was calculated. The lowest resistance to loss of body water was found in larvae from subfamilies Tanypodinae and Diamesinae Macropelopia sp. and P. branickii. They survived loss of 49.7 and 56.6% of original water content (presented values are LD-50). On the other hand the highest resistance to water loss was found in C. dorsalis. M. martini and C. stercorarius. The larvae of these species may survive loss of 67.4, 76.6 and 84.2% of original water content. Nevertheless the survival time under experimental conditions depends more closely on larval size than on lethal level of water loss. The smaller larvae desiccated faster and perished sooner than large ones despite they tolerate higher loss of body water. Keywords: Chironomidae, dessication, drought tolerance, ecophysiology, aquatic, terrestrial Introduction aquatic larvae usually by sieving of the sediment, terres- trial larvae using soil sampling and consequent Tullgren Desiccation of the environment is an important fac- extraction (Table 1).