Desiccation Resistance of Chironomid Larvae
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Genomanalyse Von Prodiamesa Olivacea
Genomanalyse von Prodiamesa olivacea Dissertation zur Erlangung des Grades Doktor der Naturwissenschaften (Dr. rer. nat.) am Fachbereich Biologie der Johannes Gutenberg-Universität in Mainz Sarah Brunck geb. 08.08.1987 in Mainz Mainz, 2016 Dekan: 1. Berichterstatter: 2. Berichterstatter: Tag der mündlichen Prüfung: ii Inhaltsverzeichnis Inhaltsverzeichnis ................................................................................................................................ iii 1 Einleitung ........................................................................................................................................... 1 1.1 Die Familie der Chironomiden ................................................................................................. 1 1.1.1 Die Gattung Chironomus ..................................................................................................... 3 1.1.2 Die Gattung Prodiamesa ....................................................................................................... 6 1.2 Die Struktur von Insekten-Genomen am Beispiel der Chironomiden ............................... 9 1.2.1 Hochrepetitive DNA-Sequenzen ..................................................................................... 11 1.2.2 Mittelrepetitive DNA-Sequenzen bzw. Gen-Familien ................................................. 13 1.2.3 Gene und genregulatorische Sequenzen ........................................................................ 17 1.3 Zielsetzung ............................................................................................................................... -
Ohio EPA Macroinvertebrate Taxonomic Level December 2019 1 Table 1. Current Taxonomic Keys and the Level of Taxonomy Routinely U
Ohio EPA Macroinvertebrate Taxonomic Level December 2019 Table 1. Current taxonomic keys and the level of taxonomy routinely used by the Ohio EPA in streams and rivers for various macroinvertebrate taxonomic classifications. Genera that are reasonably considered to be monotypic in Ohio are also listed. Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Species Pennak 1989, Thorp & Rogers 2016 Porifera If no gemmules are present identify to family (Spongillidae). Genus Thorp & Rogers 2016 Cnidaria monotypic genera: Cordylophora caspia and Craspedacusta sowerbii Platyhelminthes Class (Turbellaria) Thorp & Rogers 2016 Nemertea Phylum (Nemertea) Thorp & Rogers 2016 Phylum (Nematomorpha) Thorp & Rogers 2016 Nematomorpha Paragordius varius monotypic genus Thorp & Rogers 2016 Genus Thorp & Rogers 2016 Ectoprocta monotypic genera: Cristatella mucedo, Hyalinella punctata, Lophopodella carteri, Paludicella articulata, Pectinatella magnifica, Pottsiella erecta Entoprocta Urnatella gracilis monotypic genus Thorp & Rogers 2016 Polychaeta Class (Polychaeta) Thorp & Rogers 2016 Annelida Oligochaeta Subclass (Oligochaeta) Thorp & Rogers 2016 Hirudinida Species Klemm 1982, Klemm et al. 2015 Anostraca Species Thorp & Rogers 2016 Species (Lynceus Laevicaudata Thorp & Rogers 2016 brachyurus) Spinicaudata Genus Thorp & Rogers 2016 Williams 1972, Thorp & Rogers Isopoda Genus 2016 Holsinger 1972, Thorp & Rogers Amphipoda Genus 2016 Gammaridae: Gammarus Species Holsinger 1972 Crustacea monotypic genera: Apocorophium lacustre, Echinogammarus ischnus, Synurella dentata Species (Taphromysis Mysida Thorp & Rogers 2016 louisianae) Crocker & Barr 1968; Jezerinac 1993, 1995; Jezerinac & Thoma 1984; Taylor 2000; Thoma et al. Cambaridae Species 2005; Thoma & Stocker 2009; Crandall & De Grave 2017; Glon et al. 2018 Species (Palaemon Pennak 1989, Palaemonidae kadiakensis) Thorp & Rogers 2016 1 Ohio EPA Macroinvertebrate Taxonomic Level December 2019 Taxon Subtaxon Taxonomic Level Taxonomic Key(ies) Informal grouping of the Arachnida Hydrachnidia Smith 2001 water mites Genus Morse et al. -
DNA Barcoding
Full-time PhD studies of Ecology and Environmental Protection Piotr Gadawski Species diversity and origin of non-biting midges (Chironomidae) from a geologically young lake PhD Thesis and its old spring system Performed in Department of Invertebrate Zoology and Hydrobiology in Institute of Ecology and Environmental Protection Różnorodność gatunkowa i pochodzenie fauny Supervisor: ochotkowatych (Chironomidae) z geologicznie Prof. dr hab. Michał Grabowski młodego jeziora i starego systemu źródlisk Auxiliary supervisor: Dr. Matteo Montagna, Assoc. Prof. Łódź, 2020 Łódź, 2020 Table of contents Acknowledgements ..........................................................................................................3 Summary ...........................................................................................................................4 General introduction .........................................................................................................6 Skadar Lake ...................................................................................................................7 Chironomidae ..............................................................................................................10 Species concept and integrative taxonomy .................................................................12 DNA barcoding ...........................................................................................................14 Chapter I. First insight into the diversity and ecology of non-biting midges (Diptera: Chironomidae) -
Tanytarsini (Diptera: Chironomidae)
applyparastyle “fig//caption/p[1]” parastyle “FigCapt” This is a pre-copyedited, author-produced version of an article accepted for publication in ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY following peer review. The version of record Zakrzewska M., Singh H., Wagner-Wysiecka E., Giłka W., Minute and diverse in fossil sticky stuff: Tanytarsini (Diptera: Chironomidae) from early Eocene Indian Cambay amber, Zoological Journal of the Linnean Society, zlz159 is available online at: DOI: 10.1093/antazolina/zlz159 Minute and diverse in fossil sticky stuff: Tanytarsini (Diptera: Chironomidae) from early Eocene Indian Cambay amber MARTA ZAKRZEWSKA1, HUKAM SINGH2, EWA WAGNER-WYSIECKA3 and WOJCIECH GIŁKA1* 1Laboratory of Systematic Zoology, Department of Invertebrate Zoology and Parasitology, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, 80-308 Gdańsk, Poland 2Birbal Sahni Institute of Palaeosciences, 53 University Road, Lucknow, India 3Department of Chemistry and Technology of Functional Materials, Faculty of Chemistry, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland We here present a pioneering systematic review of fossil dipterans of the tribe Tanytarsini (family Chironomidae) discovered in Indian amber from Cambay. The specimens examined belong to five species: Gujaratomyia miripes, Stempellina stebneri sp. nov., Stempellinella pollex sp. nov., Tanytarsus forfex sp. nov. and Tanytarsus ramus sp. nov., which are described. All species belong to the oldest known Tanytarsini and come from the Cambay shale formation in Tadkeshwar, dated to the early Eocene (~54 Mya). Displaying unusual characters/structures of diagnostic and phylogenetic importance, the specimens studied are discussed against the background of the evolution and systematics of the oldest fossil (Eocene) and extant representatives in the tribe. -
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Justin Peyton MS Graduate Program in Evolution, Ecology and Organismal Biology The Ohio State University 2015 Dissertation Committee: Professor David L. Denlinger Advisor Professor Zakee L. Sabree Professor Amanda A. Simcox Professor Joseph B. Williams Copyright by Justin Tyler Peyton 2015 Abstract As ectotherms with high surface area to volume ratio, insects are particularly susceptible to desiccation and low temperature stress. In this dissertation, I examine the molecular underpinnings of two facets of these stresses: rapid cold hardening and cryoprotective dehydration. Rapid cold hardening (RCH) is an insect’s ability to prepare for cold stress when that stress is preceded by an intermediate temperature for minutes to hours. In order to gain a better understanding of cold shock, recovery from cold shock, and RCH in Sarcophaga bullata I examine the transcriptome with microarray and the metabolome with gas chromatography coupled with mass spectrometry (GCMS) in response to these treatments. I found that RCH has very little effect on the transcriptome, but results in a shift from aerobic metabolism to glycolysis/gluconeogenesis during RCH and preserved metabolic homeostasis during recovery. In cryoprotective dehydration (CD), a moisture gradient is established between external ice and the moisture in the body of an insect. As temperatures decline, the external ice crystals grow, drawing in more moisture which dehydrates the insect causing its melting point to track the ambient temperature. To gain a better understanding of CD and dehydration in Belgica antarctica I explore the transcriptome with RNA sequencing ii and the metabolome with GCMS. -
Pupae of Mesozoic Oryctochlus Kalugina, 85 (Chironomidae: Podonominae)
Proceedings of the 8th International Symposium on Chironomidae - Fauna norvegica 202 Vol. 3: 5-165. ISSN: 502-4873 Pupae of Mesozoic Oryctochlus Kalugina, 1985 (Chironomidae: Podonominae), with description of two new species Elena D. Lukashevich Lukashevich ED. 2012. Pupae of Mesozoic Oryctochlus Kalugina, 1985 (Chironomidae: Podonominae), with description of two new species. Fauna norvegica 31: 159-165. The Mesozoic Chironomidae are briefly reviewed. Two new species, Oryctochlus brundini n.sp. and O. kaluginae n.sp. from the Late Jurassic of Mongolia, are described based on pupae. The species of Oryctochlus known from pupae are photographed and keyed, their chaetotaxy is discussed. doi: 10.5324/fn.v31i0.1400. Received: 2011-10-28. Accepted: 2012-06-26. Published on paper and online: 2012-10-17. Keywords: Chironomidae, Podonominae, fossil, new species, SEM 1. Borissiak Paleontological Institute RAS, Profsoyuznaya ul. 123, 117997 Moscow, Russia E-mail: [email protected] IntRODUction Diamesinae, Orthocladiinae, and possibly Buchonomyiinae. Fossil Chironomidae are abundant but relatively little studied. With exception of Manlayamyia Kalugina, 1980, Cretaceous They are known from all three periods of the Mesozoic chironomid genera are adult-based taxa. The vast majority of (Triassic, Jurassic and Cretaceous). The greater the age, the Cretaceous chironomids have been described from Lebanese lower the diversity and abundance of chironomids, and the amber and other fossil resins from Canada, Siberia and Great scantier our knowledge of them. Britain. Therefore, their descriptions follow the standards used in So far, there is no evidence that the role of chironomids in the systematics of extant midges (Evenhuis 1994; Jarzembowski Triassic and Early Jurassic ecosystems was as significant as et al. -
National Park Service
Communities in Freshwater Coastal Rock Pools of Lake Superior, with a Focus on Chironomidae (Diptera) A Dissertation SUBMITTED TO THE FACULTY OF UNIVERSITY OF MINNESOTA BY Alexander Taurus Egan IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY Advisor: Leonard C. Ferrington, Jr. May 2014 © Alexander Taurus Egan 2014 Acknowledgements Projects of this size are rarely accomplished without the assistance and support of many people. Primarily, my advisor, Len Ferrington, has been a great source of guidance and enthusiasm. My committee, Jacques Finlay, Ralph Holzenthal, and Roger Moon, have raised the bar considerably by pushing, pulling and steering me toward being a better scientist. Friends and colleagues in the Chironomidae Research Group have made my graduate experience a time I will remember fondly, with Alyssa Anderson, Will Bouchard and Jessica Miller sharing in the successes, misfortunes, and minor but important goals that come with the territory. In particular, Petra Kranzfelder often filled the roles of peer advisor and sounding board for ideas both brilliant and ridiculous. The National Park service has been very generous in many ways, and specific thanks go to Brenda Moraska Lafrançois and Jay Glase, who provided early development and direction for this project. My colleagues Mark Edlund from the Science Museum of Minnesota and Toben Lafrançois from the Science Museum and Northland College have consistently offered excellent ecological advice on what the data mean, often acting as de facto advisors. Without support from Isle Royale National Park this project would not have been possible. In particular, the technical advice, equipment loans, and logistical assistance from Paul Brown, Rick Damstra, Joan Elias, and Mark Romanski were invaluable. -
Chironomidae of the Southeastern United States: a Checklist of Species and Notes on Biology, Distribution, and Habitat
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln US Fish & Wildlife Publications US Fish & Wildlife Service 1990 Chironomidae of the Southeastern United States: A Checklist of Species and Notes on Biology, Distribution, and Habitat Patrick L. Hudson U.S. Fish and Wildlife Service David R. Lenat North Carolina Department of Natural Resources Broughton A. Caldwell David Smith U.S. Evironmental Protection Agency Follow this and additional works at: https://digitalcommons.unl.edu/usfwspubs Part of the Aquaculture and Fisheries Commons Hudson, Patrick L.; Lenat, David R.; Caldwell, Broughton A.; and Smith, David, "Chironomidae of the Southeastern United States: A Checklist of Species and Notes on Biology, Distribution, and Habitat" (1990). US Fish & Wildlife Publications. 173. https://digitalcommons.unl.edu/usfwspubs/173 This Article is brought to you for free and open access by the US Fish & Wildlife Service at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in US Fish & Wildlife Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Fish and Wildlife Research 7 Chironomidae of the Southeastern United States: A Checklist of Species and Notes on Biology, Distribution, and Habitat NWRC Library I7 49.99:- -------------UNITED STATES DEPARTMENT OF THE INTERIOR FISH AND WILDLIFE SERVICE Fish and Wildlife Research This series comprises scientific and technical reports based on original scholarly research, interpretive reviews, or theoretical presentations. Publications in this series generally relate to fish or wildlife and their ecology. The Service distributes these publications to natural resource agencies, libraries and bibliographic collection facilities, scientists, and resource managers. Copies of this publication may be obtained from the Publications Unit, U.S. -
SPIXIANA ©Zoologische Staatssammlung München;Download: Compteromesa Saether, 1981: 193
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Spixiana, Zeitschrift für Zoologie, Supplement Jahr/Year: 1984 Band/Volume: 011 Autor(en)/Author(s): Saether Ole A. Artikel/Article: The females of Compteromesa oconeensis Saether, 1981, and Prodiamesa olivacea (Meigen, 1818) (syn. Trichodiamesaautumnalis Goetghebuer, 1926, n. syn.) (Diptera, Chironomidae, Prodiamesinae) 7-13 ©Zoologische Staatssammlung München;download: http://www.biodiversitylibrary.org/; www.biologiezentrum.at SPIXIANA ©Zoologische Staatssammlung München;download: http://www.biodiversitylibrary.org/; www.biologiezentrum.at Compteromesa Saether, 1981: 193 Generic diagnosis Male imago as in Saether (1981 : 194). (In additon the distinct elongate humeral pit shown in the fe- male (Fig. 1 A) also is present in the male, but was not visible in the holotype in which the scutum was mounted in dorsal view. Also MCu is more variable making the distance at which it reaches M basad of RM sometimes slightly longer, sometimes slightly shorter than its own length.) Female imago as in male with the following exceptions and additions: Antenna with 6 flagellomeres, pedicel with 2 setae, flagellomeres 1-5 each with 1 pair of sensilla chaetica, flagellomere 6 with about 20 sensilla chaetica. Frontal setae occasionally present. Palp with 7-8 sensilla clavata at apex of third segment. Coronal suture incomplete. Wing membrane with nume- rous setae; setae present in most cells, also in cell r and in cell m basad of MCu. Several relatively long but thin sensilla chaetica present in basal third of bind metatarsus. Gonocoxite very large and rounded, with several setae. Tergite IX rather weak, divided, with setae; with a median weak triangulär anal po- int with a few setae. -
Refinement of the Basin-Wide Index of Biotic Integrity for Non-Tidal Streams and Wadeable Rivers in the Chesapeake Bay Watershed
Refinement of the Basin-Wide Index of Biotic Integrity for Non-Tidal Streams and Wadeable Rivers in the Chesapeake Bay Watershed APPENDICES Appendix A: Taxonomic Classification Appendix B: Taxonomic Attributes Appendix C: Taxonomic Standardization Appendix D: Rarefaction Appendix E: Biological Metric Descriptions Appendix F: Abiotic Parameters for Evaluating Stream Environment Appendix G: Stream Classification Appendix H: HUC12 Watershed Characteristics in Bioregions Appendix I: Index Methodologies Appendix J: Scoring Methodologies Appendix K: Index Performance, Accuracy, and Precision Appendix L: Narrative Ratings and Maps of Index Scores Appendix M: Potential Biases in the Regional Index Ratings Appendix Citations Appendix A: Taxonomic Classification All taxa reported in Chessie BIBI database were assigned the appropriate Phylum, Subphylum, Class, Subclass, Order, Suborder, Family, Subfamily, Tribe, and Genus when applicable. A portion of the taxa reported were reported under an invalid name according to the ITIS database. These taxa were subsequently changed to the taxonomic name deemed valid by ITIS. Table A-1. The taxonomic hierarchy of stream macroinvertebrate taxa included in the Chesapeake Bay non-tidal database. -
Appendices Include ICRMP? Comment Involved in the Management ….” Management the in Involved TNARNG
APPENDIX A ENVIRONMENTAL ASSESSMENT FOR THE IMPLEMENTATION OF THE REVISED INTEGRATED NATURAL RESOURCES MANAGEMENT PLAN FOR THE VOLUNTEER TRAINING SITE – CATOOSA TENNESSEE ARMY NATIONAL GUARD CATOOSA COUNTY, GEORGIA PREPARED BY Tennessee Military Department Environmental Office February 2012 Integrated Natural Resources Management Plan A-1 VTS-Catoosa Appendix A Environmental Assessment This page intentionally left blank. Integrated Natural Resources Management Plan A-2 VTS-Catoosa Appendix A Environmental Assessment ENVIRONMENTAL ASSESSMENT FOR IMPLEMENTATION OF THE REVISED INTEGRATED NATURAL RESOURCES MANAGEMENT PLAN, VOLUNTEER TRAINING SITE CATOOSA TENNESSEE ARMY NATIONAL GUARD REVIEWED BY: DATE: __________________________________________ ________________________ TERRY M. HASTON MG, TNARNG The Adjutant General __________________________________________ ________________________ ISAAC G. OSBORNE, JR. BG, TNARNG Assistant Adjutant General, Army __________________________________________ ________________________ DARRELL D. DARNBUSH COL, TNARNG Deputy Chief of Staff, Operations __________________________________________ ________________________ GARY B. HERR LTC, TNARNG Training Site Commander _________________________________________ ________________________ STEPHEN B. LONDON COL, TNARNG Environmental Officer Integrated Natural Resources Management Plan A-3 VTS-Catoosa Appendix A Environmental Assessment Integrated Natural Resources Management Plan A-4 VTS-Catoosa Appendix A Environmental Assessment TABLE OF CONTENTS Table of Contents A-5 -
DNA Metabarcoding Reveals the Complex and Hidden Responses of Chironomids to Multiple Stressors Arne J
Beermann et al. Environ Sci Eur (2018) 30:26 https://doi.org/10.1186/s12302-018-0157-x RESEARCH Open Access DNA metabarcoding reveals the complex and hidden responses of chironomids to multiple stressors Arne J. Beermann1,2*, Vera M. A. Zizka1,2, Vasco Elbrecht1,2,3, Viktor Baranov4 and Florian Leese1,2 Abstract Background: Chironomids, or non-biting midges, often dominate stream invertebrate communities in terms of biomass, abundance, and species richness and play an important role in riverine food webs. Despite these clear facts, the insect family Chironomidae is often treated as a single family in ecological studies or bioassessments given the difculty to determine specimens further. We investigated stressor responses of single chironomid operational taxonomic units (OTUs) to three globally important stressors (increased salinity, fne sediment and reduced water fow velocity) in a highly replicated mesocosm experiment using a full-factorial design (eight treatment combinations with eight replicates each). Results: In total, 183 chironomid OTUs (97% similarity) were obtained by applying a quantitative DNA metabarcod- ing approach. Whereas on the typically applied family level, chironomids responded positively to added fne sediment and reduced water velocity in the streambed and negatively to reduced velocity in the leaf litter, an OTU-level analysis revealed a total of 15 diferent response patterns among the 35 most common OTUs only. The response patterns ranged from (a) insensitivity to any experimental manipulation over (b) highly specifc sensitivities to only one stressor to (c) additive multiple-stressor efects and even (d) complex interactions. Conclusion: Even though most OTUs (> 85%) could not be assigned to a formally described species due to a lack of accurate reference data bases at present, the results indicate increased explanatory power with higher taxonomic resolution.