<I>Callistosporium Luteoolivaceum</I>
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Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
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LITERATURE UPDATE FOR TEXAS FLESHY BASIDIOMYCOTA WITH NEW VOUCHERED RECORDS FOR SOUTHEAST TEXAS David P. Lewis Clark L. Ovrebo N. Jay Justice 262 CR 3062 Department of Biology 16055 Michelle Drive Newton, Texas 75966, U.S.A. University of Central Oklahoma Alexander, Arkansas 72002, U.S.A. [email protected] Edmond, Oklahoma 73034, U.S.A. [email protected] [email protected] ABSTRACT This is a second paper documenting the literature records for Texas fleshy basidiomycetous fungi and includes both older literature and recently published papers. We report 80 literature articles which include 14 new taxa described from Texas. We also report on 120 new records of fleshy basdiomycetous fungi collected primarily from southeast Texas. RESUMEN Este es un segundo artículo que documenta el registro de nuevas especies de hongos carnosos basidiomicetos, incluyendo artículos antiguos y recientes. Reportamos 80 artículos científicamente relacionados con estas especies que incluyen 14 taxones con holotipos en Texas. Así mismo, reportamos unos 120 nuevos registros de hongos carnosos basidiomicetos recolectados primordialmente en al sureste de Texas. PART I—MYCOLOGICAL LITERATURE ON TEXAS FLESHY BASIDIOMYCOTA Lewis and Ovrebo (2009) previously reported on literature for Texas fleshy Basidiomycota and also listed new vouchered records for Texas of that group. Presented here is an update to the listing which includes literature published since 2009 and also includes older references that we previously had not uncovered. The authors’ primary research interests center around gilled mushrooms and boletes so perhaps the list that follows is most complete for the fungi of these groups. We have, however, attempted to locate references for all fleshy basidio- mycetous fungi. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Sequencing Abstracts Msa Annual Meeting Berkeley, California 7-11 August 2016
M S A 2 0 1 6 SEQUENCING ABSTRACTS MSA ANNUAL MEETING BERKELEY, CALIFORNIA 7-11 AUGUST 2016 MSA Special Addresses Presidential Address Kerry O’Donnell MSA President 2015–2016 Who do you love? Karling Lecture Arturo Casadevall Johns Hopkins Bloomberg School of Public Health Thoughts on virulence, melanin and the rise of mammals Workshops Nomenclature UNITE Student Workshop on Professional Development Abstracts for Symposia, Contributed formats for downloading and using locally or in a Talks, and Poster Sessions arranged by range of applications (e.g. QIIME, Mothur, SCATA). 4. Analysis tools - UNITE provides variety of analysis last name of primary author. Presenting tools including, for example, massBLASTer for author in *bold. blasting hundreds of sequences in one batch, ITSx for detecting and extracting ITS1 and ITS2 regions of ITS 1. UNITE - Unified system for the DNA based sequences from environmental communities, or fungal species linked to the classification ATOSH for assigning your unknown sequences to *Abarenkov, Kessy (1), Kõljalg, Urmas (1,2), SHs. 5. Custom search functions and unique views to Nilsson, R. Henrik (3), Taylor, Andy F. S. (4), fungal barcode sequences - these include extended Larsson, Karl-Hnerik (5), UNITE Community (6) search filters (e.g. source, locality, habitat, traits) for 1.Natural History Museum, University of Tartu, sequences and SHs, interactive maps and graphs, and Vanemuise 46, Tartu 51014; 2.Institute of Ecology views to the largest unidentified sequence clusters and Earth Sciences, University of Tartu, Lai 40, Tartu formed by sequences from multiple independent 51005, Estonia; 3.Department of Biological and ecological studies, and for which no metadata Environmental Sciences, University of Gothenburg, currently exists. -
AR TICLE Calocybella, a New Genus for Rugosomyces
IMA FUNGUS · 6(1): 1–11 (2015) [!644"E\ 56!46F6!6! Calocybella, a new genus for Rugosomyces pudicusAgaricales, ARTICLE Lyophyllaceae and emendation of the genus Gerhardtia / X OO !] % G 5*@ 3 S S ! !< * @ @ + Z % V X ;/U 54N.!6!54V N K . [ % OO ^ 5X O F!N.766__G + N 3X G; %!N.7F65"@OO U % N Abstract: Calocybella Rugosomyces pudicus; Key words: *@Z.NV@? Calocybella Gerhardtia Agaricomycetes . $ VGerhardtia is Calocybe $ / % Lyophyllaceae Calocybe juncicola Calocybella pudica Lyophyllum *@Z NV@? $ Article info:@ [!5` 56!4K/ [!6U 56!4K; [5_U 56!4 INTRODUCTION .% >93 2Q9 % @ The generic name Rugosomyces [ Agaricus Rugosomyces onychinus !"#" . Rubescentes Rugosomyces / $ % OO $ % Calocybe Lyophyllaceae $ % \ G IQ 566! * % @SU % +!""! Rhodocybe. % % $ Rubescentes V O Rugosomyces [ $ Gerhardtia % % . Carneoviolacei $ G IG 5667 Rugosomyces pudicus Calocybe Lyophyllum . Calocybe / 566F / Rugosomyces 9 et al5665 U %et al5665 +!""" 2 O Rugosomyces as !""4566756!5 9 5664; Calocybe R. pudicus Lyophyllaceae 9 et al 5665 56!7 Calocybe <>/? ; I G 566" R. pudicus * @ @ !"EF+!"""G IG 56652 / 566F -
Guyanagarika, a New Ectomycorrhizal Genus of Agaricales from the Neotropics
fungal biology 120 (2016) 1540e1553 journal homepage: www.elsevier.com/locate/funbio Guyanagarika, a new ectomycorrhizal genus of Agaricales from the Neotropics a, ,1 b c Marisol SANCHEZ-GARCIA * , Terry W. HENKEL , Mary Catherine AIME , Matthew E. SMITHd, Patrick Brandon MATHENYa aDepartment of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996, USA bDepartment of Biological Sciences, Humboldt State University, Arcata, CA 95521, USA cDepartment of Botany & Plant Pathology, Purdue University, West Lafayette, IN 47907, USA dDepartment of Plant Pathology, University of Florida, Gainesville, FL 32611, USA article info abstract Article history: A new genus and three new species of Agaricales are described from the Pakaraima Moun- Received 6 June 2016 tains of Guyana in the central Guiana Shield. All three of these new species fruit on the Received in revised form ground in association with species of the ectomycorrhizal (ECM) tree genus Dicymbe (Faba- 29 July 2016 ceae subfam. Caesalpinioideae) and one species has been shown to form ectomycorrhizas. Accepted 9 August 2016 Multi-locus molecular phylogenetic analyses place Guyanagarika gen. nov. within the Cata- Available online 20 August 2016 thelasma clade, a lineage in the suborder Tricholomatineae of the Agaricales. We formally Corresponding Editor: recognize this ‘Catathelasma clade’ as an expanded family Catathelasmataceae that in- Ursula Peintner cludes the genera Callistosporium, Catathelasma, Guyanagarika, Macrocybe, Pleurocollybia, and Pseudolaccaria. Within the Catathelasmataceae, Catathelasma and Guyanagarika repre- Keywords: sent independent origins of the ectomycorrhizal habit. Guyanagarika is the first docu- Basidiomycota mented case of an ECM Agaricales genus known only from the Neotropics. Cryptic species ª 2016 British Mycological Society. -
Complete References List
Aanen, D. K. & T. W. Kuyper (1999). Intercompatibility tests in the Hebeloma crustuliniforme complex in northwestern Europe. Mycologia 91: 783-795. Aanen, D. K., T. W. Kuyper, T. Boekhout & R. F. Hoekstra (2000). Phylogenetic relationships in the genus Hebeloma based on ITS1 and 2 sequences, with special emphasis on the Hebeloma crustuliniforme complex. Mycologia 92: 269-281. Aanen, D. K. & T. W. Kuyper (2004). A comparison of the application of a biological and phenetic species concept in the Hebeloma crustuliniforme complex within a phylogenetic framework. Persoonia 18: 285-316. Abbott, S. O. & Currah, R. S. (1997). The Helvellaceae: Systematic revision and occurrence in northern and northwestern North America. Mycotaxon 62: 1-125. Abesha, E., G. Caetano-Anollés & K. Høiland (2003). Population genetics and spatial structure of the fairy ring fungus Marasmius oreades in a Norwegian sand dune ecosystem. Mycologia 95: 1021-1031. Abraham, S. P. & A. R. Loeblich III (1995). Gymnopilus palmicola a lignicolous Basidiomycete, growing on the adventitious roots of the palm sabal palmetto in Texas. Principes 39: 84-88. Abrar, S., S. Swapna & M. Krishnappa (2012). Development and morphology of Lysurus cruciatus--an addition to the Indian mycobiota. Mycotaxon 122: 217-282. Accioly, T., R. H. S. F. Cruz, N. M. Assis, N. K. Ishikawa, K. Hosaka, M. P. Martín & I. G. Baseia (2018). Amazonian bird's nest fungi (Basidiomycota): Current knowledge and novelties on Cyathus species. Mycoscience 59: 331-342. Acharya, K., P. Pradhan, N. Chakraborty, A. K. Dutta, S. Saha, S. Sarkar & S. Giri (2010). Two species of Lysurus Fr.: addition to the macrofungi of West Bengal. -
Austroboletus Subflavidus and Fistulinella Gloeocarpa (Boletaceae, Boletales) from the Dominican Republic
MYCOBIOLOGY 2021, VOL. 49, NO. 1, 24–45 https://doi.org/10.1080/12298093.2020.1843221 RESEARCH ARTICLE Outstanding Pinkish Brown-Spored Neotropical Boletes: Austroboletus subflavidus and Fistulinella gloeocarpa (Boletaceae, Boletales) from the Dominican Republic Matteo Gelardia, Claudio Angelinib,c, Federica Costanzoa, Enrico Ercoled, Beatriz Ortiz-Santanae and Alfredo Vizzinid aAnguillara Sabazia, Italy; bPordenone, Italy; cNational Botanical Garden of Santo Domingo, Santo Domingo, Dominican Republic; dDepartment of Life Science and Systems Biology, University of Turin, Torino, Italy; eUSDA Forest Service, Northern Research Station, Center for Forest Mycology Research, Madison, WI, USA ABSTRACT ARTICLE HISTORY The occurrence of Austroboletus subflavidus and Fistulinella gloeocarpa is documented from Received 23 August 2020 the Dominican Republic. The latter species is reported for the first time outside its original Revised 19 October 2020 locality in Martinique, extending the geographic range for this uncommon pinkish-spored Accepted 22 October 2020 bolete. A detailed morphological description is provided for each species and accompanied KEYWORDS by color pictures of fresh basidiomes in habitat and line drawings of the main anatomical Boletales; molecular features. Both species represent independent lineages within their respective genera based phylogeny; Greater Antilles; on phylogenetic inference. In addition, A. subflavidus clusters in a sister lineage to the core neotropical Austroboletus clade (Austroboletus clade I) here named as Austroboletus clade II. In order to boletes; taxonomy confirm the accuracy of species identification, their identity and relationships were subjected to multilocus phylogenetic analyses of three gene markers (ITS, nrLSU, RPB2) including gen- etic material already available in public databases. Austroboletus subflavidus is a widely dis- tributed species in North and Central America, whereas F. -
Macro-Fungal Diversity in the Kilum-Ijim Forest, Cameroon
Studies in Fungi 2 (1): 47–58 (2017) www.studiesinfungi.org ISSN 2465-4973 Article Doi 10.5943/sif/2/1/6 Copyright © Mushroom Research Foundation Macro-fungal diversity in the Kilum-Ijim forest, Cameroon Teke NA1, Kinge TR2*, Bechem E1, Mih AM1, Kyalo M3 and Stomeo F3 1Department of Botany and Plant Physiology, Faculty of Science, University of Buea, P.O. Box 63, South West Region, Cameroon 2Department of Biological Sciences, Faculty of Science, The University of Bamenda, P.O. Box 39, Bambili, North West Region, Cameroon 3Bioscience eastern and central Africa-International Livestock Research Institute (BecA-ILRI) Hub, P.O Box 30709-00100, Nairobi, Kenya Teke NA, Kinge TR, Bechem E, Mih AM, Kyalo M, Stomeo F 2017 – Macro-fungal diversity in the Kilum-Ijim forest, Cameroon. Studies in Fungi 2(1), 47–58, Doi 10.5943/sif/2/1/6 Abstract Fungi are one of the most species-rich and diverse groups of organisms on Earth, with forests ecosystems being the main habitats for macro-fungi. The Kilum-Ijim forest in Cameroon is a community forest populated by several species of plant and animal life forms; although macro-fungi are exploited for food and medicine, their diversity has not been documented in this ecosystem. Since anthropogenic impact on this forest may cause decline of macro-fungal diversity or extinction of known and previously undiscovered species, it is imperative to generate a checklist of the existing macro-fungi for use in the implementation of sustainable conservation and management practices. This study was therefore carried out to generate information on macro-fungal diversity in this forest. -
<I>Rickenella Fibula</I>
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 8-2017 Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte- associate in the Hymenochaetales Hailee Brynn Korotkin University of Tennessee, Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Part of the Evolution Commons Recommended Citation Korotkin, Hailee Brynn, "Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte-associate in the Hymenochaetales. " Master's Thesis, University of Tennessee, 2017. https://trace.tennessee.edu/utk_gradthes/4886 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Hailee Brynn Korotkin entitled "Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte-associate in the Hymenochaetales." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Master of Science, with a major in Ecology -
Basidiomycota, Agaricales) from the Republic of São Tomé and Príncipe, West Africa
Mycosphere 8(9): 1317–1391 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/9/5 Copyright © Guizhou Academy of Agricultural Sciences The gymnopoid fungi (Basidiomycota, Agaricales) from the Republic of São Tomé and Príncipe, West Africa. Desjardin DE1 and Perry BA2 1Department of Biology, San Francisco State University, 1600 Holloway Ave., San Francisco, California 94132, USA; [email protected] 2Department of Biological Sciences, California State University East Bay, 25800 Carlos Bee Blvd., Hayward, California 94542, USA; [email protected] Desjardin DE, Perry BA 2017 – The gymnopoid fungi (Basidiomycota, Agaricales) from the Republic of São Tomé and Príncipe, West Africa. Mycosphere 8(9), 1317–1391, Doi 10.5943/mycosphere/8/9/5 Abstract Thirty-one species of gymnopoid fungi are reported from the African island nation, Republic of São Tomé and Príncipe. Ten represent new species (Arrhenia cystidiata, Callistosporium elegans, Campanella burkei, Gymnopus billbowesii, G. hirtelloides, G. irresolutus, G. mustachius, G. ocellus, G. pleurocystidiatus, G. rodhallii), four are new nomenclatural combinations (G. cervinus, G. hirtellus, G. ugandensis, Tricholomopsis aurea), and all 21 previously described species represent new distribution records. Comprehensive descriptions, line drawings, colour photographs, comparisons with allied taxa, a dichotomous key to aid identification, and a phylogenetic analysis of members of the Omphalotaceae based on ITS rDNA sequence data are provided. Key words – Gymnopus – Marasmiellus – fungal diversity – mushrooms – Gulf of Guinea Introduction In April 2006 (two weeks) and April 2008 (three weeks), expeditions led by scientists from the California Academy of Sciences and joined by mycologists from San Francisco State University visited the West African islands of São Tomé and Príncipe to document the diversity of plants, amphibians, marine invertebrates and macrofungi. -
(12) United States Patent (10) Patent No.: US 9,072,776 B2 Kristiansen (45) Date of Patent: *Jul
US009072776B2 (12) United States Patent (10) Patent No.: US 9,072,776 B2 Kristiansen (45) Date of Patent: *Jul. 7, 2015 (54) ANTI-CANCER COMBINATION TREATMENT 5,032,401 A 7, 1991 Jamas et al. AND KIT OF-PARTS 5,223,491 A 6/1993 Donzis 5,322,841 A 6/1994 Jamas et al. O O 5,397,773. A 3, 1995 Donzis (75) Inventor: Bjorn Kristiansen, Frederikstad (NO) 5.488,040 A 1/1996 Jamas et al. 5,504,079 A 4, 1996 Jamas et al. (73) Assignee: Glycanova AS, Gamle Fredrikstad (NO) 5,519,009 A 5/1996 Donzis 5,532,223. A 7/1996 Jamas et al. (*) Notice: Subject to any disclaimer, the term of this 5,576,015 A 1 1/1996 Donzis patent is extended or adjusted under 35 3. A SE As al U.S.C. 154(b) by 424 days. 5622,940. A 4/1997 Ostroff This patent is Subject to a terminal dis- 33 A 28, AE" claimer. 5,663,324 A 9, 1997 James et al. 5,702,719 A 12/1997 Donzis (21) Appl. No.: 11/917,521 5,705,184. A 1/1998 Donzis 5,741,495 A 4, 1998 Jamas et al. (22) PCT Filed: Jun. 14, 2006 5,744,187 A 4/1998 Gaynor 5,756,318 A 5/1998 KOsuna 5,783,569 A 7/1998 Jamas et al. (86). PCT No.: PCT/DK2OO6/OOO339 5,811,542 A 9, 1998 Jamas et al. 5,817,643 A 10, 1998 Jamas et al. E. S 12, 2008 5,849,720 A 12/1998 Jamas et al.