Space-Group Symmetry
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SPACE GROUPS International Tables for Crystallography, Volume A: Space-group Symmetry Mois I. Aroyo Universidad del Pais Vasco, Bilbao, Spain Bilbao Crystallographic Server http://www.cryst.ehu.es C´esar Capillas, UPV/EHU 1 SPACE GROUPS Crystal pattern: A model of the ideal crystal (crystal structure) in point space consisting of a strictly 3-dimensional periodic set of points Space group G: The set of all symmetry operations (isometries) of a crystal pattern Translation subgroup H G: The infinite set of all translations that are symmetry operations of the crystal pattern Point group of the The factor group of the space group G with respect to the translation space groups PG: subgroup T: PG ≅ G/H INTERNATIONAL TABLES FOR CRYSTALLOGRAPHY VOLUME A: SPACE-GROUP SYMMETRY Extensive tabulations and illustrations of the 17 plane groups and of the 230 space groups •headline with the relevant group symbols; •diagrams of the symmetry elements and of the general position; •specification of the origin and the asymmetric unit; •list of symmetry operations; •generators; •general and special positions with multiplicities, site symmetries, coordinates and reflection conditions; •symmetries of special projections; GENERAL LAYOUT: LEFT-HAND PAGE General Layout: Right-hand page Primitive and centred lattice basis in 2D {a1, a2}: two translation vectors, linearly independent, form a lattice basis Primitive basis: If all lattice vectors are expressed as integer linear combinations of the basis vectors If some lattice vectors are expressed as Centred basis: linear combinations of the basis vectors with rational, non-integer coefficients Conventional centred basis (2D): c Number of lattice points per primitive and centred cells Crystal families, crystal systems, conventional coordinate system and Bravais lattices in 2D 3D-unit cell and lattice parameters lattice basis: {a, b, c} C B unit cell: the parallelepiped A defined by the basis vectors primitive P and centred unit cells: A,B,C,F, I, R number of lattice points per unit cell Crystal families, crystal systems, lattice systems and Bravais lattices in 3D HEADLINE BLOCK Short Hermann- Crystal class Mauguin symbol Schoenflies (point group) Crystal symbol system Number of Full Hermann- Patterson space group Mauguin symbol symmetry HERMANN-MAUGUIN SYMBOLISM FOR SPACE GROUPS Hermann-Mauguin symbols for space groups The Hermann–Mauguin symbol for a space group consists of a sequence of letters and numbers, here called the constituents of the HM symbol. (i) The first constituent is always a symbol for the conventional cell of the translation lattice of the space group (ii) The second part of the full HM symbol of a space group consists of one position for each of up to three representative symmetry directions. To each position belong the generating symmetry operations of their representative symmetry direction. The position is thus occupied either by a rotation, screw rotation or rotoinversion and/ or by a reflection or glide reflection. (iii) Simplest-operation rule: pure rotations > screw rotations; pure rotations > rotoinversions ‘>’ means ‘has priority’ reflection m > a; b; c > n 14 Bravais Lattices crystal family Symmetry directions A direction is called a symmetry direction of a crystal structure if it is parallel to an axis of rotation, screw rotation or rotoinversion or if it is parallel to the normal of a reflection or glide-reflection plane. A symmetry direction is thus the direction of the geometric element of a symmetry operation, when the normal of a symmetry plane is used for the description of its orientation. Hermann-Mauguin symbols for space groups Example: Hermann-Mauguin symbols for space groups secondary tertiary primary direction direction direction PRESENTATION OF SPACE-GROUP SYMMETRY OPERATIONS IN INTERNATIONAL TABLES FOR CRYSTALLOGRAPHY, VOL. A Crystallographic symmetry operations characteristics: fixed points of isometries (W,w)Xf=Xf geometric elements Types of isometries preserve handedness identity: the whole space fixed translation t: no fixed point x˜ = x + t ◦ rotation: one line fixed φ = k × 360 /N rotation axis screw rotation: no fixed point screw axis screw vector do not Types of isometries preserve handedness centre of roto-inversion fixed roto-inversion: roto-inversion axis inversion: centre of inversion fixed reflection: plane fixed reflection/mirror plane glide reflection: no fixed point glide plane glide vector Matrix formalism linear/matrix translation part column part matrix-column Seitz symbol pair Space group Cmm2 (No. 35) How are the symmetry operations Diagram of symmetry elements represented in ITA ? 0 b a Diagram of general position points General Position General position ~ (i) coordinate triplets of an image point X of the original point X= x under (W,w) of G y z ~ -presentation of infinite image points X under the action of (W,w) of G (ii) short-hand notation of the matrix-column pairs (W,w) of the symmetry operations of G -presentation of infinite symmetry operations of G (W,w) = (I,tn)(W,w0), 0≤wi0<1 Space Groups: infinite order General position Coset decomposition G:TG (I,0) (W2,w2) ... (Wm,wm) ... (Wi,wi) (I,t1) (W2,w2+t1) ... (Wm,wm+t1) ... (Wi,wi+t1) (I,t2) (W2,w2+t2) ... (Wm,wm+t2) ... (Wi,wi+t2) ... ... ... ... ... ... (I,tj) (W2,w2+tj) ... (Wm,wm+tj) ... (Wi,wi+tj) ... ... ... ... ... ... Factor group G/TG isomorphic to the point group PG of G Point group PG = {I, W2, W 3,…,Wi} Example: P12/m1 Coset decomposition G:TG Point group PG = {1, 2, 1, m} General position ¯ TG TG 2 TG 1 TG m (I,0) (2,0) ( 1¯ ,0) (m,0) (I,t1) (2,t1) (1¯ , t1) (m, t1) (I,t2) (2,t2) (1¯ , t2) (m,t2) ... ... ... ... (I,tj) (2,tj) (1¯ , tj) (m, tj) ... ... ... ... -1 n1 n1/2 at 1 n2/2 -1 n2 n3/2 inversion centres (1,t): -1 n3 EXAMPLE Coset decomposition P121/c1:T Point group ? General position (I,0) (2,0 ½ ½) (1,0) (m,0 ½ ½) (I,t1) (2,0 ½ ½+t1) (1 ,t1) (m,0 ½ ½ +t1) (I,t2) (2,0 ½ ½ +t2) (1 ,t2) (m,0 ½ ½ +t2) ... ... ... ... ... ... (I,tj) (2,0 ½ ½ +tj) (1 ,tj) (m,0 ½ ½ +tj) ... ... ... ... ... ... inversion centers (1 ,p q r): 1 at p/2,q/2,r/2 (2,0 ½+v ½) 21screw axes (2,u ½+v ½ +w) (2,u ½ ½ +w) Symmetry Operations Block TYPE of the symmetry operation SCREW/GLIDE component ORIENTATION of the geometric element LOCATION of the geometric element GEOMETRIC INTERPRETATION OF THE MATRIX- COLUMN PRESENTATION OF THE SYMMETRY OPERATIONS Example: Cmm2 General position Diagram of symmetry elements 0 b TG TG 2 TG my TG mx (I,0) (2,0) (my,0) (mx,0) (I,t1) (2,t1) (my,t1) (mx, t 1) a (I,t2) (2,t2) (my,t2) (mx,t2) Diagram of ... ... ... ... general position points (I,tj) (2,tj) (my,tj) (mx, t j) Space group P21/c (No. 14) EXAMPLE Matrix-column presentation Geometric interpretation Bilbao Crystallographic Server Problem: Matrix-column presentation Geometrical interpretation GENPOS space group 14 Example GENPOS: Space group P21/c (14) Space-group symmetry operations short-hand notation matrix-column presentation Geometric interpretation Seitz symbols General positions ITA data SEITZ SYMBOLS FOR SYMMETRY OPERATIONS short-hand description of the matrix-column presentations of Seitz symbols { R | t } the symmetry operations of the space groups - specify the type and the order of the symmetry rotation (or linear) operation; part R - orientation of the symmetry element by the direction of the axis for rotations and rotoinversions, or the direction of the normal to reflection planes. 1 and 1 identity and inversion m reflections 2, 3, 4 and 6 rotations 3, 4 and 6 rotoinversions translation part t translation parts of the coordinate triplets of the General position blocks EXAMPLE Seitz symbols for symmetry operations of hexagonal and trigonal crystal systems Glazer et al. Acta Cryst A 70, 300 (2014) EXAMPLE Matrix-column presentation Geometric interpretation Seitz symbols (1) {1|0} (2) {2010|01/21/2 } (3) {1|0} (4) {m010|01/21/2} EXERCISES Problem 2.16 (b) 1. Characterize geometrically the matrix-column pairs listed under General position of the space group P4mm in ITA. 2. Consider the diagram of the symmetry elements of P4mm. Try to determine the matrix-column pairs of the symmetry operations whose symmetry elements are indicated on the unit-cell diagram. 3. Compare your results with the results of the program SYMMETRY OPERATIONS SPACE-GROUPS DIAGRAMS Diagrams of symmetry elements 0 b c 0 three different settings a a permutations c of a,b,c 0 b Diagram of general position points Diagram of symmetry elements Space group Cmm2 (No. 35) 0 b conventional setting a General Position How many general position points per unit cell are there? Diagram of general position points EXAMPLE Space group Cmm2 (No. 35) Geometric interpretation glide plane, t=1/2a glide plane, t=1/2b 0 b at y=1/4, ⊥b at x=1/4, ⊥a Matrix-column General Position presentation of symmetry a operations x+1/2,-y+1/2,z -x+1/2,y+1/2,z Example: P4mm Diagram of symmetry Diagram of general elements position points ⎫ ⎭ ⎬ Symmetry elements Geometric Fixed points Symmetry element } elements } + Symmetry operations Element set that share the same geometric element Examples line All rotations and screw rotations with the same axis, the same Rotation axis st th } 1 , ..., (n-1) powers + angle and sense of rotation and all coaxial equivalents the same screw vector (zero for rotation) up to a lattice translation vector. plane Glide plane All glide reflections with the same } defining operation+ reflection plane, with glide of d.o. all coplanar equivalents (taken to be zero for reflections) by a lattice translation vector. Symmetry operations and symmetry elements Geometric elements and Element sets P. M. de Wolff et al. Acta Cryst (1992) A48 727 Diagram of symmetry elements Example: P4mm Element set of (00z) line A l l r o t a t i o n s a n d s c r e w Symmetry operations 1st, 2 nd, 3 rd powers + rotations with the same axis, that share (0,0,z) as all coaxial equivalents geometric element } the same angle and sense of rotation and the same screw vector (zero for rotation) up to Element set of (0,0,z) line a lattice translation vector.