Exobasidium Darwinii, a New Hawaiian Species Infecting Endemic Vaccinium Reticulatum in Haleakala National Park
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Methods and Work Profile
REVIEW OF THE KNOWN AND POTENTIAL BIODIVERSITY IMPACTS OF PHYTOPHTHORA AND THE LIKELY IMPACT ON ECOSYSTEM SERVICES JANUARY 2011 Simon Conyers Kate Somerwill Carmel Ramwell John Hughes Ruth Laybourn Naomi Jones Food and Environment Research Agency Sand Hutton, York, YO41 1LZ 2 CONTENTS Executive Summary .......................................................................................................................... 8 1. Introduction ............................................................................................................ 13 1.1 Background ........................................................................................................................ 13 1.2 Objectives .......................................................................................................................... 15 2. Review of the potential impacts on species of higher trophic groups .................... 16 2.1 Introduction ........................................................................................................................ 16 2.2 Methods ............................................................................................................................. 16 2.3 Results ............................................................................................................................... 17 2.4 Discussion .......................................................................................................................... 44 3. Review of the potential impacts on ecosystem services ....................................... -
Axpcoords & Parallel Axparafit: Statistical Co-Phylogenetic Analyses
BMC Bioinformatics BioMed Central Software Open Access AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa Alexandros Stamatakis*1,2, Alexander F Auch3, Jan Meier-Kolthoff3 and Markus Göker4 Address: 1École Polytechnique Fédérale de Lausanne, School of Computer & Communication Sciences, Laboratory for Computational Biology and Bioinformatics STATION 14, CH-1015 Lausanne, Switzerland, 2Swiss Institute of Bioinformatics, 3Center for Bioinformatics (ZBIT), Sand 14, Tübingen, University of Tübingen, Germany and 4Organismic Botany/Mycology, Auf der Morgenstelle 1, Tübingen, University of Tübingen, Germany Email: Alexandros Stamatakis* - [email protected]; Alexander F Auch - [email protected]; Jan Meier- Kolthoff - [email protected]; Markus Göker - [email protected] * Corresponding author Published: 22 October 2007 Received: 26 June 2007 Accepted: 22 October 2007 BMC Bioinformatics 2007, 8:405 doi:10.1186/1471-2105-8-405 This article is available from: http://www.biomedcentral.com/1471-2105/8/405 © 2007 Stamatakis et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Current tools for Co-phylogenetic analyses are not able to cope with the continuous accumulation of phylogenetic data. The sophisticated statistical test for host-parasite co-phylogenetic analyses implemented in Parafit does not allow it to handle large datasets in reasonable times. The Parafit and DistPCoA programs are the by far most compute-intensive components of the Parafit analysis pipeline. -
In Vitro Fermentation Characteristics and Methane Mitigation Responded to Flavonoid Extract Levels from Alternanthera Sissoo and Dietary Ratios
fermentation Article In Vitro Fermentation Characteristics and Methane Mitigation Responded to Flavonoid Extract Levels from Alternanthera sissoo and Dietary Ratios Sukruthai Sommai 1, Anusorn Cherdthong 1,* , Chanon Suntara 1, Sarong So 1, Metha Wanapat 1 and Sineenart Polyorach 2 1 Tropical Feed Resources Research and Development Center (TROFREC), Department of Animal Science, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand; [email protected] (S.S.); [email protected] (C.S.); [email protected] (S.S.); [email protected] (M.W.) 2 Department of Animal Production Technology and Fisheries, Faculty of Agricultural Technology, King Mongkut’s Institute of Technology, Bangkok 10520, Thailand; [email protected] * Correspondence: [email protected]; Tel.: +66-43-202-362; Fax: +66-43-202-362 Abstract: Two experiments were conducted under this study: Experiment 1 was to study production yield, chemical composition, and in vitro degradability of Brazilian spinach (Alternanthera sissoo; BS) leaf and leaf + leaf-stalk at various maturity ages of 15, 30, 45, and 60 days after plantation and regrowth and Experiment 2 was to evaluate the effect of flavonoid extract from BS leaf and leaf + leaf-stalk and dietary ratios on ruminal gas production, fermentation characteristics, and in vitro degradability. Experiment 1 showed that maturity ages after planting and regrowth increased, Citation: Sommai, S.; the yield significantly increased. Increasing maturity ages significantly (p < 0.05) increased neutral Cherdthong, A.; Suntara, C.; So, S.; detergent fiber and acid detergent fiber content and decreased crude protein content, total flavonoid Wanapat, M.; Polyorach, S. In Vitro (TF) content, and degradability for both leaf and leaf + leaf-stalk. -
Introduction to Neotropical Entomology and Phytopathology - A
TROPICAL BIOLOGY AND CONSERVATION MANAGEMENT – Vol. VI - Introduction to Neotropical Entomology and Phytopathology - A. Bonet and G. Carrión INTRODUCTION TO NEOTROPICAL ENTOMOLOGY AND PHYTOPATHOLOGY A. Bonet Department of Entomology, Instituto de Ecología A.C., Mexico G. Carrión Department of Biodiversity and Systematic, Instituto de Ecología A.C., Mexico Keywords: Biodiversity loss, biological control, evolution, hotspot regions, insect biodiversity, insect pests, multitrophic interactions, parasite-host relationship, pathogens, pollination, rust fungi Contents 1. Introduction 2. History 2.1. Phytopathology 2.1.1. Evolution of the Parasite-Host Relationship 2.1.2. The Evolution of Phytopathogenic Fungi and Their Host Plants 2.1.3. Flor’s Gene-For-Gene Theory 2.1.4. Pathogenetic Mechanisms in Plant Parasitic Fungi and Hyperparasites 2.2. Entomology 2.2.1. Entomology in Asia and the Middle East 2.2.2. Entomology in Ancient Greece and Rome 2.2.3. New World Prehispanic Cultures 3. Insect evolution 4. Biodiversity 4.1. Biodiversity Loss and Insect Conservation 5. Ecosystem services and the use of biodiversity 5.1. Pollination in Tropical Ecosystems 5.2. Biological Control of Fungi and Insects 6. The future of Entomology and phytopathology 7. Entomology and phytopathology section’s content 8. ConclusionUNESCO – EOLSS Acknowledgements Glossary Bibliography Biographical SketchesSAMPLE CHAPTERS Summary Insects are among the most abundant and diverse organisms in terrestrial ecosystems, making up more than half of the earth’s biodiversity. To date, 1.5 million species of organisms have been recorded, although around 85% of potential species (some 10 million) have not yet been identified. In the case of the Neotropics, although insects are clearly a vital element, there are many families of organisms and regions that are yet to be well researched. -
(Vinca Rosea and Vinca Difformis) from Libya
Research Article Open Acc J of Toxicol Volume 4 Issue 1 - April 2019 Copyright © All rights are reserved by Salem Mohamed Edrah DOI : 10.19080/OAJT.2019.04.555626 Phytochemical Study and In Vitro Antibacterial Activity of Two Traditional Medicinal Plants (Vinca Rosea and Vinca Difformis) from Libya Salem Mohamed Edrah1*, Fatimh Mustafa Meelad1 and Fouzy Alafid2 1Department of Chemistry, Al-Khums El-Mergeb University, Libya 2University of Pardubice, Czech Republic Submission: March 04, 2019; Published: April 02, 2019 *Corresponding author: Salem Mohamed Edrah, Department of Chemistry, Faculty of Sciences Al-Khums El-Mergeb University, Al-Khums, Libya Abstract Vinca rosea and Vinca difformis gardens. Aqueous and Ethanol extracts leaf of both species were preliminary phytochemically screened and tested against some pathogenic bacteria. Qualitatively analysis revealed are magnificentTannin, Saponin, plants Flavonoids growing in and the Terpenoids Libyan woodlands gave positive and are results utilized and beautifully phlobatanins as an and embellishing Steroids gave in negative results. Quantitative analysis revealed that the percentage yield of bioactive constituents is present more in Vinca rosea than in Vinca difformis. In addition, the crude extracts of Vinca rosea and Vinca difformis were tested (using the Disc Diffusion Method) for their antimicrobial bacteria include Staphylococcus aureus and Streptococcus spp., and two strains of gram-negative bacteria including Escherichia coli and Klebsiella pneumoniaactivity against the bacterial pathogens. The influences of aqueous and ethanol extracts on some pathogenic: two strains of gram-positive antibiotics by measuring the diameter of the inhibition zones, After incubation, the zone of inhibition was measured in mm, a good inhibition of more than ,6 and mm the were sensitivity observed of indicating the microorganisms the effective to antibacterial the extracts activityof plant’s of thespecies bioactive were compoundscompared with in both each of other the plants and with leaves designated extracts. -
Tannins, Saponins and Calcium Oxalate Crystals from Nigerian Species of Boerhavia L
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector South African Journal of Botany 2002, 68: 386–388 Copyright © NISC Pty Ltd Printed in South Africa — All rights reserved SOUTH AFRICAN JOURNAL OF BOTANY ISSN 0254–6299 Short Communication Tannins, saponins and calcium oxalate crystals from Nigerian species of Boerhavia L. (Nyctaginaceae) HO Edeoga* and CI Ikem Department of Biological Sciences, Federal University of Agriculture, Umudike PMB 7267, Umuahia — Abia State, Nigeria * Corresponding author, e-mail: [email protected] Received 24 July 2001, accepted in revised form 19 October 2001 Three species of Boerhavia from southern Nigeria have tals were present around the regions of the cortex of the been screened phytochemically. The presence of tan- stem but were localised almost in every tissue of the nins and saponins are being reported for the first time root. Tannins and saponins were isolated from the tis- in B. coccinea and B. erecta whereas the report of these sues (leaves, stems and roots) of these plants hence the substances in B. diffusa corroborates previous reports. significance of these findings remains an area of further The nature of calcium oxalate crystals in the roots and investigations as far as the chemical constituents of stems of B. diffusa and B. erecta could be utilised for these plants are concerned. the characterisation of these plants. The oxalate crys- Boerhavia L. is a herbaceous dicotyledonous plant distrib- ferent families (Bohm and Koupai–Abyazani 1993, Touyama uted in the tropics and subtropics of the world. The West et al. -
Blister Blight Disease of Tea: an Enigma Chayanika Chaliha and Eeshan Kalita
Chapter Blister Blight Disease of Tea: An Enigma Chayanika Chaliha and Eeshan Kalita Abstract Tea is one of the most popular beverages consumed across the world and is also considered a major cash crop in countries with a moderately hot and humid climate. Tea is produced from the leaves of woody, perennial, and monoculture crop tea plants. The tea leaves being the source of production the foliar diseases which may be caused by a variety of bacteria, fungi, and other pests have serious impacts on production. The blis- ter blight disease is one such serious foliar tea disease caused by the obligate biotrophic fungus Exobasidium vexans. E. vexans, belonging to the phylum basidiomycete primarily infects the young succulent harvestable tea leaves and results in ~40% yield crop loss. It reportedly alters the critical biochemical characteristics of tea such as catechin, flavo- noid, phenol, as well as the aroma in severely affected plants. The disease is managed, so far, by administering high doses of copper-based chemical fungicides. Although alternate approaches such as the use of biocontrol agents, biotic and abiotic elicitors for inducing systemic acquired resistance, and transgenic resistant varieties have been tested, they are far from being adopted worldwide. As the research on blister blight disease is chiefly focussed towards the evaluation of defense responses in tea plants, during infection very little is yet known about the pathogenesis and the factors contrib- uting to the disease. The purpose of this chapter is to explore blister blight disease and to highlight the current challenges involved in understanding the pathogen and patho- genic mechanism that could significantly contribute to better disease management. -
Forest Pathology in Hawaii*
343 FOREST PATHOLOGY IN HAWAII* DONALD E. GARDNERt United States Geological Survey, Biological Resources Division, Pacific Island Ecological Research Center, Department of Botany, University of Hawaii at Manoa 3190 Maile Way, Honolulu, Hawaii 96822, USA (Revision received for publication 3 February 2004) ABSTRACT Native Hawaiian forests are characterised by a high degree of endemism, including pathogens as well as their hosts. With the exceptions of koa (Acacia koa Gray), possibly maile (Alyxia olivifonnis Gaud.), and, in the past, sandalwood (Santalum spp.), forest species are of little commercial value. On the other hand, these forests are immensely important from a cultural, ecological, and evolutionary standpoint. Forest disease research was lacking during the mid-twentieth century, but increased markedly with the recognition of ohia (Metrosideros polymorpha Gaud.) decline in the 1970s. Because many pathogens are themselves endemic, or are assumed to be, having evolved with their hosts, research emphasis in natural areas is on understanding host-parasite interactions and evolutionary influences, rather than disease control. Aside from management of native forests, attempts at establishing a commercial forest industry have included importation of several species of pine, Araucana, and Eucalyptus as timber crops, and of numerous ornamentals. Diseases of these species have been introduced with their hosts. The attacking of native species by introduced pathogens is problematic — for example, Armillaria mellea (Vahl ex Fr.) Quel, on koa and mamane (Sophora chrysophylla (Salisb.) Seem.). Much work remains to be done in both native and commercial aspects of Hawaiian forest pathology. Keywords: endemic species; indigenous species; introduced species; island ecology; ohia decline. INTRODUCTION AND HISTORY Forest pathology in Hawaii, as elsewhere, originated with casual observations of obvious disease and decline phenomena by amateur observers and general foresters. -
Guidance Document Pohakuloa Training Area Plant Guide
GUIDANCE DOCUMENT Recovery of Native Plant Communities and Ecological Processes Following Removal of Non-native, Invasive Ungulates from Pacific Island Forests Pohakuloa Training Area Plant Guide SERDP Project RC-2433 JULY 2018 Creighton Litton Rebecca Cole University of Hawaii at Manoa Distribution Statement A Page Intentionally Left Blank This report was prepared under contract to the Department of Defense Strategic Environmental Research and Development Program (SERDP). The publication of this report does not indicate endorsement by the Department of Defense, nor should the contents be construed as reflecting the official policy or position of the Department of Defense. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise, does not necessarily constitute or imply its endorsement, recommendation, or favoring by the Department of Defense. Page Intentionally Left Blank 47 Page Intentionally Left Blank 1. Ferns & Fern Allies Order: Polypodiales Family: Aspleniaceae (Spleenworts) Asplenium peruvianum var. insulare – fragile fern (Endangered) Delicate ENDEMIC plants usually growing in cracks or caves; largest pinnae usually <6mm long, tips blunt, uniform in shape, shallowly lobed, 2-5 lobes on acroscopic side. Fewer than 5 sori per pinna. Fronds with distal stipes, proximal rachises ocassionally proliferous . d b a Asplenium trichomanes subsp. densum – ‘oāli’i; maidenhair spleenwort Plants small, commonly growing in full sunlight. Rhizomes short, erect, retaining many dark brown, shiny old stipe bases.. Stipes wiry, dark brown – black, up to 10cm, shiny, glabrous, adaxial surface flat, with 2 greenish ridges on either side. Pinnae 15-45 pairs, almost sessile, alternate, ovate to round, basal pinnae smaller and more widely spaced. -
Chapter 10 • Principles of Conserving the Arctic's Biodiversity
Chapter 10 Principles of Conserving the Arctic’s Biodiversity Lead Author Michael B. Usher Contributing Authors Terry V.Callaghan, Grant Gilchrist, Bill Heal, Glenn P.Juday, Harald Loeng, Magdalena A. K. Muir, Pål Prestrud Contents Summary . .540 10.1. Introduction . .540 10.2. Conservation of arctic ecosystems and species . .543 10.2.1. Marine environments . .544 10.2.2. Freshwater environments . .546 10.2.3. Environments north of the treeline . .548 10.2.4. Boreal forest environments . .551 10.2.5. Human-modified habitats . .554 10.2.6. Conservation of arctic species . .556 10.2.7. Incorporating traditional knowledge . .558 10.2.8. Implications for biodiversity conservation . .559 10.3. Human impacts on the biodiversity of the Arctic . .560 10.3.1. Exploitation of populations . .560 10.3.2. Management of land and water . .562 10.3.3. Pollution . .564 10.3.4. Development pressures . .566 10.4. Effects of climate change on the biodiversity of the Arctic . .567 10.4.1. Changes in distribution ranges . .568 10.4.2. Changes in the extent of arctic habitats . .570 10.4.3. Changes in the abundance of arctic species . .571 10.4.4. Changes in genetic diversity . .572 10.4.5. Effects on migratory species and their management . .574 10.4.6. Effects caused by non-native species and their management .575 10.4.7. Effects on the management of protected areas . .577 10.4.8. Conserving the Arctic’s changing biodiversity . .579 10.5. Managing biodiversity conservation in a changing environment . .579 10.5.1. Documenting the current biodiversity . .580 10.5.2. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Phylogenetic Studies on Nuclear Large Subunit Ribosomal DNA Sequences of Smut Fungi and Related Taxar
2045 Phylogenetic studies on nuclear large subunit ribosomal DNA sequences of smut fungi and related taxar Dominik Begerow, Robert Bauer, and Franz Oberwinkler Abstract: To show phylogenetic relationships among the smut fungi and thcir relatives. we sequenced a part of the nuclear LSU rDNA from 43 different species of smut fungi and related taxa. Our data were combined with the existing sequences of seven further smut fungi and 17 other basidiomycetes. Two sets of sequences were analyzed. The first set with a representative number of simple septate basidiomycetes, complex scptate basidiomycetes, and smut fungi was analyzed with the neighbor-joining method to estimate the general topology of the basidiomycetes phylogeny and the positions of the smut fungi. The tripartite subclassification of the basidiomycetes into the Urediniomycetes, Ustilaginomycetes, and Hymcnomycetes was confirmed and two groups of smut fungi appeared. Thc smut genera Aurantiosporiurn, Microbotrl-unr, Fulvisporium, and Ustilentr-loma are members of the Urediniomycetes, whereas the other smut species tested are members of the Ustilaginomycetes wrth Entorrhiz.a as a basal taxon. The second set of 46 Ustilaginomycetes was analyzed using the neighbor-joining and the maximum parsimony methods to show the inner topology of the Ustilaginomycetes. The results indicated three major lineages among Ustilaginomycetes corresponding to the Entorrhizomycetidae, Exobasidiomycetidae, and Ustilaginomycetidae. The Entorrhizomycetidae are represented by Entorrhiza species. The Ustilaginomycctidae contain at least two groups, thc Urocystales and Ustilaginales. The Exobasidiomycetidae include five orders, i.e., Doassansiales, Entylomatales, Exobasidiales. Georgefischeriales. and Tilletiales, and Graphiola phoenicis and Microstroma juglandis. Our results support a classification mainly based on ultrastructure. The description of the Glomosporiaceae is emended.