Microenvironment Constitution and Telomere Dynamics of Bone Marrow Stromal Cells in Patients Undergoing Allogeneic Bone Marrow Transplantation
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Retrotransposon- and Microsatellite Sequence-Associated Genomic Changes in Early Generations of a Newly Synthesized Allotetraploid Cucumis 3 Hytivus Chen & Kirkbride
Plant Mol Biol DOI 10.1007/s11103-011-9804-y Retrotransposon- and microsatellite sequence-associated genomic changes in early generations of a newly synthesized allotetraploid Cucumis 3 hytivus Chen & Kirkbride Biao Jiang • Qunfeng Lou • Zhiming Wu • Wanping Zhang • Dong Wang • Kere George Mbira • Yiqun Weng • Jinfeng Chen Received: 27 May 2011 / Accepted: 27 June 2011 Ó Springer Science+Business Media B.V. 2011 Abstract Allopolyploidization is considered an essential generations of a newly synthesized allotetraploid Cucum- evolutionary process in plants that could trigger genomic is 9 hytivus Chen & Kirkbride (2n = 4x = 38) which was shock in allopolyploid genome through activation of tran- derived from crossing between cultivated cucumber scription of retrotransposons, which may be important in C. sativus L. (2n = 2x = 14) and its wild relative C. hystrix plant evolution. Two retrotransposon-based markers, inter- Chakr. (2n = 2x = 24). Extensive genomic changes were retrotransposon amplified polymorphism and retro- observed, most of which involved the loss of parental DNA transposon-microsatellite amplified polymorphism and a fragments and gain of novel fragments in the allotetraploid. microsatellite-based marker, inter simple sequence repeat Among the 28 fragments examined, 24 were lost while four were employed to investigate genomic changes in early were novel, suggesting that DNA sequence elimination is a relatively frequent event during polyploidization in Cucumis. Interestingly, of the 24 lost fragments, 18 were of C. hystrix origin, four were C. sativus-specific, and the Electronic supplementary material The online version of this remaining two were shared by both species, implying that article (doi:10.1007/s11103-011-9804-y) contains supplementary material, which is available to authorized users. -
Bone Marrow (Stem Cell) Transplant for Sickle Cell Disease Bone Marrow (Stem Cell) Transplant
Bone Marrow (Stem Cell) Transplant for Sickle Cell Disease Bone Marrow (Stem Cell) Transplant for Sickle Cell Disease 1 Produced by St. Jude Children’s Research Hospital Departments of Hematology, Patient Education, and Biomedical Communications. Funds were provided by St. Jude Children’s Research Hospital, ALSAC, and a grant from the Plough Foundation. This document is not intended to take the place of the care and attention of your personal physician. Our goal is to promote active participation in your care and treatment by providing information and education. Questions about individual health concerns or specifi c treatment options should be discussed with your physician. For more general information on sickle cell disease, please visit our Web site at www.stjude.org/sicklecell. Copyright © 2009 St. Jude Children’s Research Hospital How did bone marrow (stem cell) transplants begin for children with sickle cell disease? Bone marrow (stem cell) transplants have been used for the treatment and cure of a variety of cancers, immune system diseases, and blood diseases for many years. Doctors in the United States and other countries have developed studies to treat children who have severe sickle cell disease with bone marrow (stem cell) transplants. How does a bone marrow (stem cell) transplant work? 2 In a person with sickle cell disease, the bone marrow produces red blood cells that contain hemoglobin S. This leads to the complications of sickle cell disease. • To prepare for a bone marrow (stem cell) transplant, strong medicines, called chemotherapy, are used to weaken or destroy the patient’s own bone marrow, stem cells, and infection fi ghting system. -
Young, L.J., & Hammock E.A.D. (2007)
Update TRENDS in Genetics Vol.23 No.5 Research Focus On switches and knobs, microsatellites and monogamy Larry J. Young1 and Elizabeth A.D. Hammock2 1 Department of Psychiatry and Behavioral Sciences, Center for Behavioral Neuroscience, 954 Gatewood Road, Yerkes National Primate Research Center, Emory University School of Medicine, Atlanta, GA 30322, USA 2 Vanderbilt Kennedy Center and Department of Pharmacology, 465 21st Avenue South, MRBIII, Room 8114, Vanderbilt University, Nashville, TN 37232, USA Comparative studies in voles have suggested that a formation. In male prairie voles, infusion of vasopressin polymorphic microsatellite upstream of the Avpr1a locus facilitates the formation of partner preferences in the contributes to the evolution of monogamy. A recent study absence of mating [7]. The distribution of V1aR in the challenged this hypothesis by reporting that there is no brain differs markedly between the socially monogamous relationship between microsatellite structure and mon- and socially nonmonogamous vole species [8]. Site-specific ogamy in 21 vole species. Although the study demon- pharmacological manipulations and viral-vector-mediated strates that the microsatellite is not a universal genetic gene-transfer experiments in prairie, montane and mea- switch that determines mating strategy, the findings do dow voles suggest that the species differences in Avpr1a not preclude a substantial role for Avpr1a in regulating expression in the brain underlie the species differences in social behaviors associated with monogamy. social bonding among these three closely related species of vole [3,6,9,10]. Single genes and social behavior Microsatellites and monogamy The idea that a single gene can markedly influence Analysis of the Avpr1a loci in the four vole species complex social behaviors has recently received consider- mentioned so far (prairie, montane, meadow and pine voles) able attention [1,2]. -
Genetic Manipulation of Stem Cells Eleni Papanikolaou1,2*, Kalliopi I
logy & Ob o st ec e tr n i y c s G Papanikolaou et al. Gynecol Obstetric 2011, S:6 Gynecology & Obstetrics DOI: 10.4172/2161-0932.S6-001 ISSN: 2161-0932 Review Article Open Access Genetic Manipulation of Stem Cells Eleni Papanikolaou1,2*, Kalliopi I. Pappa1,3 and Nicholas P. Anagnou1,2 1Laboratory of Cell and Gene Therapy, Centre for Basic Research, Biomedical Research Foundation of the Academy of Athens (BRFAA), Athens, Greece 2Laboratory of Biology, University of Athens School of Medicine, Athens, Greece 3First Department of Obstetrics and Gynecology, University of Athens School of Medicine, Alexandra Hospital, Athens, Greece Abstract Stem cells have the remarkable potential for self-renewal and differentiation into many cell types in the body during early life and development. In addition, in many tissues they constitute a source of internal repair system, dividing essentially without limit to replenish damaged or dead cells. After division, each new cell has the potential either to retain the stem cell status or to differentiate to a more specialized cell type, such as a red blood cell, a brain cell or a heart cell. Until recently, three types of stem cells from animals and humans have been characterized, i.e. embryonic stem cells, fetal stem cells and somatic adult stem cells. However, in late 2007, researchers accomplished another breakthrough by identifying conditions that allow some specialized adult cells to be “reprogrammed” genetically to assume a stem cell-like state. These cells, called induced pluripotent stem cells (iPSCs), express genes and factors important for maintaining the unique properties and features of embryonic stem cells. -
Genetics and Stem Cell Research A.Genetics
7: Genetics and Stem Cell Research A.Genetics 1. Introduction The principal special feature of genetics research is that the result of the study applies not only to the proband but also influences her lineage both in the past and in the future. For example genetic studies demonstrated Thomas Jefferson’s sexual relationship with his slave Sally Hemings and defined their descendants to this day. As we all know from television, genetic studies can be done from any tissue fragment that contains DNA so that studies of surgical specimens, biopsy materials, hair, epithelium and blood samples can all be utilized for extensive genetic studies. 2. Sampling Some DNA is more medically valuable than other. Samples from isolated populations in which a particular disorder is prevalent have a much greater probability of yielding the causal gene(s) because they have fewer genome variations than in the general population. Once isolated, the genetic material associated with the disorder has a good chance of yielding novel diagnostic and/or therapeutic approaches for the disorder. 3. Property rights A persistent question is whether the providers of the genetic material have any rights to the products created from their genetic material. These days, most consent forms are written explicitly to exclude intellectual property rights from the subjects. As might be imagined, this smacks of exploitation in the developing world. Negotiation of a monetary return to the community has sometimes been concluded. Important and lucrative products have been derived from individuals’ genomes without their receiving royalties or other compensation. However, the knowledge, technical expertise, and capital needed to make a useful product from a blood or tissue sample come from the company not the donor. -
Evaluation of the Effects of Sequence Length and Microsatellite Instability
Int. J. Biol. Sci. 2019, Vol. 15 2641 Ivyspring International Publisher International Journal of Biological Sciences 2019; 15(12): 2641-2653. doi: 10.7150/ijbs.37152 Research Paper Evaluation of the effects of sequence length and microsatellite instability on single-guide RNA activity and specificity Changzhi Zhao1*, Yunlong Wang2*, Xiongwei Nie1, Xiaosong Han1, Hailong Liu1, Guanglei Li1, Gaojuan Yang1, Jinxue Ruan1, Yunlong Ma1, Xinyun Li1, 3, Huijun Cheng1, Shuhong Zhao1, 3, Yaping Fang2, Shengsong Xie1, 3 1. Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education & Key Lab of Swine Genetics and Breeding of Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, P. R. China; 2. Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, College of Informatics, Huazhong Agricultural University, Wuhan 430070, P. R. China; 3. The Cooperative Innovation Center for Sustainable Pig Production, Huazhong Agricultural University, Wuhan 430070, P. R. China. *The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors. Corresponding authors: Shengsong Xie, Tel: 086-027-87387480; Fax: 086-027-87280408; Email: [email protected]; Yaping Fang, Tel: 86-28-87285078; Fax: 86-28-87284285; Email: [email protected]. © The author(s). This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2019.07.21; Accepted: 2019.09.02; Published: 2019.10.03 Abstract Clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 technology is effective for genome editing and now widely used in life science research. -
The Amazing Stem Cell What Are They? Where Do They Come From? How Are They Changing Medicine? Stem Cells Are “Master Cells”
The Amazing Stem Cell What are they? Where do they come from? How are they changing medicine? Stem cells are “master cells” Stem cells can be “guided” to become many other cell types. Stem Cell Bone cell Self-renewed stem cell Brain cell Heart muscle Blood cell cell There are several types of stem cells, each from a unique source Embryonic stem cells* • Removed from embryos created for in vitro fertilization after donation consent is given. (Not sourced from aborted fetuses.) • Embryos are 3-5 days old (blastocyst) and have about 150 cells. • Can become any type of cell in the body, also called pluripotent cells. • Can regenerate or repair diseased tissue and organs. • Current use limited to eye-related disorders. * Not used by Mayo Clinic. Adult stem cells • Found in most adult organs and tissues, including bone marrow. • Often taken from bone marrow in the hip. • Blood stem cells can be collected through apheresis (separated from blood). • Can regenerate and repair diseased or damaged tissues (regenerative medicine). • Can be used as specialized “drugs” to potentially treat degenerative conditions. • Currently tested in people with neurological and heart disease. Umbilical cord blood stem cells • Found in blood in placenta and umbilical cord after childbirth. • Have the ability to change into specialized cells (like blood cells), also called progenitor cells. • Parents choose to donate umbilical cord blood for use in research, or have it stored for private or public banks. • Can be used in place of bone marrow stem cell transplants in some clinical applications. Bioengineered stem cells • Regular adult cells (e.g., blood, skin) reprogrammed to act like embryonic stem cells (induced pluripotent stem cells). -
The Longest Telomeres: a General Signature of Adult Stem Cell Compartments
Downloaded from genesdev.cshlp.org on September 25, 2021 - Published by Cold Spring Harbor Laboratory Press The longest telomeres: a general signature of adult stem cell compartments Ignacio Flores,1 Andres Canela,1 Elsa Vera,1 Agueda Tejera,1 George Cotsarelis,2 and María A. Blasco1,3 1Telomeres and Telomerase Group, Molecular Oncology Program, Spanish National Cancer Centre (CNIO), Madrid E-28029, Spain; 2University of Pennsylvania School of Medicine, M8 Stellar-Chance Laboratories, Philadelphia, Pennsylvania 19104, USA Identification of adult stem cells and their location (niches) is of great relevance for regenerative medicine. However, stem cell niches are still poorly defined in most adult tissues. Here, we show that the longest telomeres are a general feature of adult stem cell compartments. Using confocal telomere quantitative fluorescence in situ hybridization (telomapping), we find gradients of telomere length within tissues, with the longest telomeres mapping to the known stem cell compartments. In mouse hair follicles, we show that cells with the longest telomeres map to the known stem cell compartments, colocalize with stem cell markers, and behave as stem cells upon treatment with mitogenic stimuli. Using K15-EGFP reporter mice, which mark hair follicle stem cells, we show that GFP-positive cells have the longest telomeres. The stem cell compartments in small intestine, testis, cornea, and brain of the mouse are also enriched in cells with the longest telomeres. This constitutes the description of a novel general property of adult stem cell compartments. Finally, we make the novel finding that telomeres shorten with age in different mouse stem cell compartments, which parallels a decline in stem cell functionality, suggesting that telomere loss may contribute to stem cell dysfunction with age. -
Nano-Biosensor for Monitoring the Neural Differentiation of Stem Cells
nanomaterials Review Nano-Biosensor for Monitoring the Neural Differentiation of Stem Cells Jin-Ho Lee 1,2,†, Taek Lee 1,2,† and Jeong-Woo Choi 1,2,* 1 Department of Chemical and Biomolecular Engineering, Sogang University, 35 Baekbeom-ro (Sinsu-dong), Mapo-gu, Seoul 121-742, Korea; [email protected] (J.-H.L.); [email protected] (T.L.) 2 Institute of Integrated Biotechnology, Sogang University, 35 Baekbeom-ro (Sinsu-dong), Mapo-gu, Seoul 121-742, Korea * Correspondence: [email protected]; Tel.: +82-2-718-1976; Fax: +82-2-3273-0331 † These authors contributed equally to this work. Academic Editors: Chen-Zhong Li and Ling-Jie Meng Received: 6 July 2016; Accepted: 17 November 2016; Published: 28 November 2016 Abstract: In tissue engineering and regenerative medicine, monitoring the status of stem cell differentiation is crucial to verify therapeutic efficacy and optimize treatment procedures. However, traditional methods, such as cell staining and sorting, are labor-intensive and may damage the cells. Therefore, the development of noninvasive methods to monitor the differentiation status in situ is highly desirable and can be of great benefit to stem cell-based therapies. Toward this end, nanotechnology has been applied to develop highly-sensitive biosensors to noninvasively monitor the neural differentiation of stem cells. Herein, this article reviews the development of noninvasive nano-biosensor systems to monitor the neural differentiation of stem cells, mainly focusing on optical (plasmonic) and eletrochemical methods. The findings in this review suggest that novel nano-biosensors capable of monitoring stem cell differentiation are a promising type of technology that can accelerate the development of stem cell therapies, including regenerative medicine. -
Stem Cell Research: an Overview
Biochemistry & Molecular Biology Letters Review | Vol 3 Iss 2 Stem Cell Research: An Overview Shatadru Bhattacharjee* Department of Pharmacognosy, Dr. BC Roy College of Pharmacy, West Bengal, India *Corresponding author: Shatadru B, Dr. BC Roy College of Pharmacy, West Bengal, India, Email- [email protected] Received: March 03, 2017; Accepted: March 19, 2017; Published: March 24, 2017 Abstract A primary cell can reproduce itself or give rise to more specialized cell type is known as stem cell. The stem cell is the primogenitor at the top of the family tree among all type of cell [1-7]. One blood stem cell gives birth to red blood cells (RBC), white cells (WBC) and platelets stem cells that vary in their developmental capacity. A multi-potent stem cell can give birth to several types of mature cell. A pluripotent stem cell can give birth to all types of adult tissue cells and extra embryonic tissue cells which support embryonic development inside fetus[8-14]. A totipotent stem cell can give birth to a new individual given appropriate maternal support. The current growth of stem cell research is quiet good from last few decades. Stem cell therapy has capabilities of regenerating any human tissue damaged by injury, disease or ageing could be available within a few years. In this review there are few discussion related to current stem cell research and development [15-21]. Keywords: Stem cell; Regenerative medicine; Cell biology Introduction Stem cells have the remarkable potential in the development of several different type of cell in the body during early life and growth [22-28]. -
Genome-Wide Mapping and Characterization of Microsatellites In
www.nature.com/scientificreports OPEN Genome-wide mapping and characterization of microsatellites in the swamp eel genome Received: 14 February 2017 Zhigang Li, Feng Chen, Chunhua Huang, Weixin Zheng, Chunlai Yu, Hanhua Cheng & Accepted: 26 April 2017 Rongjia Zhou Published: xx xx xxxx We described genome-wide screening and characterization of microsatellites in the swamp eel genome. A total of 99,293 microsatellite loci were identified in the genome with an overall density of 179 microsatellites per megabase of genomic sequences. The dinucleotide microsatellites were the most abundant type representing 71% of the total microsatellite loci and the AC-rich motifs were the most recurrent in all repeat types. Microsatellite frequency decreased as numbers of repeat units increased, which was more obvious in long than short microsatellite motifs. Most of microsatellites were located in non-coding regions, whereas only approximately 1% of the microsatellites were detected in coding regions. Trinucleotide repeats were most abundant microsatellites in the coding regions, which represented amino acid repeats in proteins. There was a chromosome-biased distribution of microsatellites in non-coding regions, with the highest density of 203.95/Mb on chromosome 8 and the least on chromosome 7 (164.06/Mb). The most abundant dinucleotides (AC)n was mainly located on chromosome 8. Notably, genomic mapping showed that there was a chromosome-biased association of genomic distributions between microsatellites and transposon elements. Thus, the novel dataset of microsatellites in swamp eel provides a valuable resource for further studies on QTL-based selection breeding, genetic resource conservation and evolutionary genetics. Swamp eel (Monopterus albus) taxonomically belongs to teleosts, the family Synbranchidae of the order Synbranchiformes (Neoteleostei, Teleostei, and Vertebrata). -
Basic Pluripotent Stem Cell Culture Protocols Maria Borowski∗, Maria Giovino-Doherty, Lan Ji, Meng-Jiao Shi, Kelly P
Basic pluripotent stem cell culture protocols Maria Borowski∗, Maria Giovino-Doherty, Lan Ji, Meng-Jiao Shi, Kelly P. Smith and Joseph Laning, Massachusetts Stem Cell Bank, University of Massachusetts Medical School, Shrewsbury, MA 01545 USA Abstract Stem cell research is a rapidly expanding field with the potential to develop therapeutic agents to treat diseases as well as study disease development from early stages. The culture of human pluripotent stem cells shares many of the same protocols as standard mammalian cell culture. However, the successful culture and maintenance of human pluripotent stem cells (hPSCs) in an undifferentiated state requires additional consider- ations to ensure that cells maintain their key characteristics of self-renewal and pluripotency. There are several basic techniques needed for the culturing of mammalian cells, including thawing frozen stocks, plating cells in culture vessels, changing media, passaging and cryopreservation. The protocols in this document represent a subset of the standard operating procedures used to maintain and culture stem cells at the Massachusetts Human Stem Cell Bank, and have been thoroughly testing and verified. A Stem cell culture considerations Stem cell research is a rapidly expanding field with the potential to develop therapeutic agents to treat diseases as well as study disease development from early stages. However, to fulfill this promise, researchers need to have access to standardized protocols for the development, maintenance and differentiation of these unique cells. Such “best practices” will allow comparisons of different studies and hasten the refinement of these techniques. Such standardization can be driven by resources such as StemBook and by stem cell banks.