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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Faculdade De Biociências
FACULDADE DE BIOCIÊNCIAS PROGRAMA DE PÓS-GRADUAÇÃO EM ZOOLOGIA ANÁLISE FILOGENÉTICA DE DORADIDAE (PISCES, SILURIFORMES) Maria Angeles Arce Hernández TESE DE DOUTORADO PONTIFÍCIA UNIVERSIDADE CATÓLICA DO RIO GRANDE DO SUL Av. Ipiranga 6681 - Caixa Postal 1429 Fone: (51) 3320-3500 - Fax: (51) 3339-1564 90619-900 Porto Alegre - RS Brasil 2012 PONTIFÍCIA UNIVERSIDADE CATÓLICA DO RIO GRANDE DO SUL FACULDADE DE BIOCIÊNCIAS PROGRAMA DE PÓS-GRADUAÇÃO EM ZOOLOGIA ANÁLISE FILOGENÉTICA DE DORADIDAE (PISCES, SILURIFORMES) Maria Angeles Arce Hernández Orientador: Dr. Roberto E. Reis TESE DE DOUTORADO PORTO ALEGRE - RS - BRASIL 2012 Aviso A presente tese é parte dos requisitos necessários para obtenção do título de Doutor em Zoologia, e como tal, não deve ser vista como uma publicação no senso do Código Internacional de Nomenclatura Zoológica, apesar de disponível publicamente sem restrições. Dessa forma, quaisquer informações inéditas, opiniões, hipóteses e conceitos novos apresentados aqui não estão disponíveis na literatura zoológica. Pessoas interessadas devem estar cientes de que referências públicas ao conteúdo deste estudo somente devem ser feitas com aprovação prévia do autor. Notice This thesis is presented as partial fulfillment of the dissertation requirement for the Ph.D. degree in Zoology and, as such, is not intended as a publication in the sense of the International Code of Zoological Nomenclature, although available without restrictions. Therefore, any new data, opinions, hypothesis and new concepts expressed hererin are not available -
Water Diversion in Brazil Threatens Biodiversit
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/332470352 Water diversion in Brazil threatens biodiversity Article in AMBIO A Journal of the Human Environment · April 2019 DOI: 10.1007/s13280-019-01189-8 CITATIONS READS 0 992 12 authors, including: Vanessa Daga Valter Monteiro de Azevedo-Santos Universidade Federal do Paraná 34 PUBLICATIONS 374 CITATIONS 17 PUBLICATIONS 248 CITATIONS SEE PROFILE SEE PROFILE Fernando Pelicice Philip Fearnside Universidade Federal de Tocantins Instituto Nacional de Pesquisas da Amazônia 68 PUBLICATIONS 2,890 CITATIONS 612 PUBLICATIONS 20,906 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Freshwater microscrustaceans from continental Ecuador and Galápagos Islands: Integrative taxonomy and ecology View project Conservation policy View project All content following this page was uploaded by Philip Fearnside on 11 May 2019. The user has requested enhancement of the downloaded file. The text that follows is a PREPRINT. O texto que segue é um PREPRINT. Please cite as: Favor citar como: Daga, Vanessa S.; Valter M. Azevedo- Santos, Fernando M. Pelicice, Philip M. Fearnside, Gilmar Perbiche-Neves, Lucas R. P. Paschoal, Daniel C. Cavallari, José Erickson, Ana M. C. Ruocco, Igor Oliveira, André A. Padial & Jean R. S. Vitule. 2019. Water diversion in Brazil threatens biodiversity: Potential problems and alternatives. Ambio https://doi.org/10.1007/s13280-019- 01189-8 . (online version published 27 April 2019) ISSN: 0044-7447 (print version) ISSN: 1654-7209 (electronic version) Copyright: Royal Swedish Academy of Sciences & Springer Science+Business Media B.V. -
Tesis Doctorado Comabella, Yamilé.Pdf
Desarrollo larval del manjuarí Atractosteus tristoechus (Bloch y Schneider, 1801) (Pisces: Lepisosteidae) en condiciones de cultivo: Aspectos morfo-fisiológicos. Item Type Theses and Dissertations Authors Comabella Soto, Y. Download date 29/09/2021 14:43:02 Item License http://creativecommons.org/licenses/by-nc/3.0/ Link to Item http://hdl.handle.net/1834/5384 UNIVERSIDAD DE LA HABANA CENTRO DE INVESTIGACIONES MARINAS Desarrollo larval del manjuarí Atractosteus tristoechus (Bloch y Schneider, 1801) (Pisces: Lepisosteidae) en condiciones de cultivo: Aspectos morfo-fisiológicos. Tesis presentada en opción al grado científico de Doctor en Ciencias Biológicas. Yamilé Comabella Soto La Habana 2011 UNIVERSIDAD DE LA HABANA CENTRO DE INVESTIGACIONES MARINAS Desarrollo larval del manjuarí Atractosteus tristoechus (Bloch y Schneider, 1801) (Pisces: Lepisosteidae) en condiciones de cultivo: Aspectos morfo-fisiológicos. Tesis presentada en opción al grado científico de Doctor en Ciencias Biológicas. Autor: M.C. Yamilé Comabella Soto Tutora: Dra. Tsai García Galano Asesora: Dra. Olimpia Carrillo Farnés La Habana 2011 AGRADECIMIENTOS Todo el que de una forma u otra ha estado cerca de mí en estos últimos seis años, puede entender que escribir los agradecimientos de esta tesis no es tarea fácil, pues han sido muchos los que me han brindado su ayuda incondicional para la elaboración y felizmente la culminación de este trabajo. Quisiera comenzar agradeciendo a mi tutora Tsai García y a mi asesora Olimpia Carrillo, por toda la ayuda, los conocimientos y el ánimo brindado para continuar a pesar de los obstáculos. A ambas muchas gracias. Al gran grupo del Centro para la Reproducción de la Ictiofauna Indígena de la Ciénaga de Zapata, y en especial a Andrés Hurtado, por abrirme las puertas para la realización de las experimentaciones, por acogernos como familia y por ayudarnos de la forma en que lo hicieron. -
Belonidae Bonaparte 1832 Needlefishes
ISSN 1545-150X California Academy of Sciences A N N O T A T E D C H E C K L I S T S O F F I S H E S Number 16 September 2003 Family Belonidae Bonaparte 1832 needlefishes By Bruce B. Collette National Marine Fisheries Service Systematics Laboratory National Museum of Natural History, Washington, DC 20560–0153, U.S.A. email: [email protected] Needlefishes are a relatively small family of beloniform fishes (Rosen and Parenti 1981 [ref. 5538], Collette et al. 1984 [ref. 11422]) that differ from other members of the order in having both the upper and the lower jaws extended into long beaks filled with sharp teeth (except in the neotenic Belonion), the third pair of upper pharyngeal bones separate, scales on the body relatively small, and no finlets following the dorsal and anal fins. The nostrils lie in a pit anterior to the eyes. There are no spines in the fins. The dorsal fin, with 11–43 rays, and anal fin, with 12–39 rays, are posterior in position; the pelvic fins, with 6 soft rays, are located in an abdominal position; and the pectoral fins are short, with 5–15 rays. The lateral line runs down from the pectoral fin origin and then along the ventral margin of the body. The scales are small, cycloid, and easily detached. Precaudal vertebrae number 33–65, caudal vertebrae 19–41, and total verte- brae 52–97. Some freshwater needlefishes reach only 6 or 7 cm (2.5 or 2.75 in) in total length while some marine species may attain 2 m (6.5 ft). -
A Reappraisal of Phylogenetic Relationships Among Auchenipterid Catfishes of the Subfamily Centromochlinae and Diagnosis of Its Genera (Teleostei: Siluriformes)
ISSN 0097-3157 PROCEEDINGS OF THE ACADEMY OF NATURAL SCIENCES OF PHILADELPHIA 167: 85-146 2020 A reappraisal of phylogenetic relationships among auchenipterid catfishes of the subfamily Centromochlinae and diagnosis of its genera (Teleostei: Siluriformes) LUISA MARIA SARMENTO-SOARES Programa de Pós-Graduação em Biologia Animal, Universidade Federal do Espírito Santo. Prédio Bárbara Weinberg, Campus de Goiabeiras, 29043-900, Vitória, ES, Brasil. http://orcid.org/0000-0002-8621-1794 Laboratório de Ictiologia, Universidade Estadual de Feira de Santana. Av. Transnordestina s/no., Novo Horizonte, 44036-900, Feira de Santana, BA, Brasil Instituto Nossos Riachos, INR, Estrada de Itacoatiara, 356 c4, 24348-095, Niterói, RJ. www.nossosriachos.net E-mail: [email protected] RONALDO FERNANDO MARTINS-PINHEIRO Instituto Nossos Riachos, INR, Estrada de Itacoatiara, 356 c4, 24348-095, Niterói, RJ. www.nossosriachos.net E-mail: [email protected] ABSTRACT.—A hypothesis of phylogenetic relationships is presented for species of the South American catfish subfamily Centromochlinae (Auchenipteridae) based on parsimony analysis of 133 morphological characters in 47 potential ingroup taxa and one outgroup taxon. Of the 48 species previously considered valid in the subfamily, only one, Centromochlus steindachneri, was not evaluated in the present study. The phylogenetic analysis generated two most parsimonious trees, each with 202 steps, that support the monophyly of Centromochlinae composed of five valid genera: Glanidium, Gephyromochlus, Gelanoglanis, Centromochlus and Tatia. Although those five genera form a clade sister to the monotypic Pseudotatia, we exclude Pseudotatia from Centromochlinae. The parsimony analysis placed Glanidium (six species) as the sister group to all other species of Centromochlinae. Gephyromochlus contained a single species, Gephyromochlus leopardus, that is sister to the clade Gelanoglanis (five species) + Centromochlus (eight species). -
THE SOUTH AMERICAN NEMATOGNATHI of the MUSEUMS at LEIDEN and AMSTERDAM by J. W. B. VAN DER STIQCHEL the Collections of the South
THE SOUTH AMERICAN NEMATOGNATHI OF THE MUSEUMS AT LEIDEN AND AMSTERDAM by J. W. B. VAN DER STIQCHEL (Museum voor het OnderwSs, 's-Gravenhage) The collections of the South American Nematognathi in the Rijksmuseum van Natuurlijke Historie at Leiden, referred to in this publication as "Mu• seum Leiden", and of those in the Zoologisch Museum at Amsterdam, referred to as "Museum Amsterdam", consist of valuable material, which for a very important part has not been studied yet. I feel very much obliged to Prof. Dr. H. Boschma who allowed me to start with the study of the Leiden collections and whom I offer here my sincere thanks. At the same time I want to express my gratitude towards Prof. Dr. L. F. de Beaufort, who has been so kind to place the collection of the Zoological Museum at Amsterdam at my disposal. Furthermore I am greatly indebted to Dr. F. P. Koumans at Leiden for his assistance and advice to solve the various problems which I met during my study. The material dealt with here comes from a large number of collections of different collectors, from various areas of South America, it consists of 125 species, belonging to 14 families of the order Nematognathi. Contrary to the original expectations no adequate number of specimens from Surinam could be obtained to get a sufficient opinion about the occurrence of the various species, and, if possible, also about their distribution in this tropical American part of the Netherlands. On the whole the collections from Surinam were limited to the generally known species only. -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Info Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2020. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition. Los Angeles: Explore.org Ocean Frontiers. 201 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 5.0. 24 February 2020. 2 Table of Contents Identification Images Species Profiles Additional Info Index TABLE OF CONTENTS SILVERY FISHES (23) ........................... 47 African Pompano ......................................... 48 FOREWORD AND INTRODUCTION .............. 6 Crevalle Jack ................................................. 49 IDENTIFICATION IMAGES ...................... 10 Permit .......................................................... 50 Sharks and Rays ........................................ 10 Almaco Jack ................................................. 51 Illustrations of SharkCam -
TIAGO OCTAVIO BEGOT RUFFEIL Avaliação Dos Efeitos Da
PROGRAMA DE PÓS-GRADUAÇÃO EM ZOOLOGIA UNIVERSIDADE FEDERAL DO PARÁ MUSEU PARAENSE EMÍLIO GOELDI TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Belém, 2018 2 TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Tese apresentada ao Programa de Pós-Graduação em Zoologia, do convênio da Universidade Federal do Pará e Museu Paraense Emílio Goeldi, como requisito parcial para obtenção do título de Doutor em Zoologia. Área de concentração: Biodiversidade e conservação Linha de Pesquisa: Ecologia animal Orientador: Prof. Dr. Luciano Fogaça de Assis Montag Belém, 2018 3 FICHA CATALOGRÁFICA 4 FOLHA DE APROVAÇÃO TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Tese apresentada ao Programa de Pós-Graduação em Zoologia, do convênio da Universidade Federal do Pará e Museu Paraense Emílio Goeldi, como requisito parcial para obtenção do título de Doutor em Zoologia, sendo a COMISSÃO JULGADORA composta pelos seguintes membros: Prof. Dr. Luciano Fogaça de Assis Montag Universidade Federal do Pará (Presidente) Prof. Dra. Cecilia Gontijo Leal Museu Paraense Emílio Goeldi Prof. Dr. David Hoeinghaus University of North Texas Profa. Dra. Erica Maria Pellegrini Caramaschi Universidade Federal do Rio de Janeiro Prof. Dr. Marcos Pérsio Dantas Santos Universidade Federal do Pará Prof. Dr. Paulo dos Santos Pompeu Universidade Federal de Lavras Prof. Dr. Raphael Ligeiro Barroso Santos Universidade Federal do Pará Prof. -
Multilocus Molecular Phylogeny of the Suckermouth Armored Catfishes
Molecular Phylogenetics and Evolution xxx (2014) xxx–xxx Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Multilocus molecular phylogeny of the suckermouth armored catfishes (Siluriformes: Loricariidae) with a focus on subfamily Hypostominae ⇑ Nathan K. Lujan a,b, , Jonathan W. Armbruster c, Nathan R. Lovejoy d, Hernán López-Fernández a,b a Department of Natural History, Royal Ontario Museum, 100 Queen’s Park, Toronto, Ontario M5S 2C6, Canada b Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario M5S 3B2, Canada c Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA d Department of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4, Canada article info abstract Article history: The Neotropical catfish family Loricariidae is the fifth most species-rich vertebrate family on Earth, with Received 4 July 2014 over 800 valid species. The Hypostominae is its most species-rich, geographically widespread, and eco- Revised 15 August 2014 morphologically diverse subfamily. Here, we provide a comprehensive molecular phylogenetic reap- Accepted 20 August 2014 praisal of genus-level relationships in the Hypostominae based on our sequencing and analysis of two Available online xxxx mitochondrial and three nuclear loci (4293 bp total). Our most striking large-scale systematic discovery was that the tribe Hypostomini, which has traditionally been recognized as sister to tribe Ancistrini based Keywords: on morphological data, was nested within Ancistrini. This required recognition of seven additional tribe- Neotropics level clades: the Chaetostoma Clade, the Pseudancistrus Clade, the Lithoxus Clade, the ‘Pseudancistrus’ Guiana Shield Andes Mountains Clade, the Acanthicus Clade, the Hemiancistrus Clade, and the Peckoltia Clade. -
The Neotropical Genus Austrolebias: an Emerging Model of Annual Killifishes Nibia Berois1, Maria J
lopmen ve ta e l B D io & l l o l g e y C Cell & Developmental Biology Berois, et al., Cell Dev Biol 2014, 3:2 ISSN: 2168-9296 DOI: 10.4172/2168-9296.1000136 Review Article Open Access The Neotropical Genus Austrolebias: An Emerging Model of Annual Killifishes Nibia Berois1, Maria J. Arezo1 and Rafael O. de Sá2* 1Departamento de Biologia Celular y Molecular, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay 2Department of Biology, University of Richmond, Richmond, Virginia, USA *Corresponding author: Rafael O. de Sá, Department of Biology, University of Richmond, Richmond, Virginia, USA, Tel: 804-2898542; Fax: 804-289-8233; E-mail: [email protected] Rec date: Apr 17, 2014; Acc date: May 24, 2014; Pub date: May 27, 2014 Copyright: © 2014 Rafael O. de Sá, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract Annual fishes are found in both Africa and South America occupying ephemeral ponds that dried seasonally. Neotropical annual fishes are members of the family Rivulidae that consist of both annual and non-annual fishes. Annual species are characterized by a prolonged embryonic development and a relatively short adult life. Males and females show striking sexual dimorphisms, complex courtship, and mating behaviors. The prolonged embryonic stage has several traits including embryos that are resistant to desiccation and undergo up to three reversible developmental arrests until hatching. These unique developmental adaptations are closely related to the annual fish life cycle and are the key to the survival of the species.