From Living Systems to New Concepts in Materials Chemistry
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Magnetotactic Bacteria and Their Application in Medicine
Chem cal ist si ry y & h P B f i o o Dasdag and Bektas. J Phys Chem Biophys 2014, 4:2 p l h a Journal of Physical Chemistry & y n s r DOI: 10.4172/2161-0398.1000141 i u c o s J ISSN: 2161-0398 Biophysics ResearchReview Article Article OpenOpen Access Access Magnetotactic Bacteria and their Application in Medicine Suleyman Dasdag1* and Hava Bektas2 1Department of Biophysics, Medical School of Dicle University, Diyarbakir, Turkey 2Department of Biophysics, Medical School of Yuzuncu Yil University, Van / Turkey Abstract It is a known fact how the magnetic field of the Earth is very important for life. Relation between living systems and the earth magnetic field has been investigated for many years. Birds and their migration routes are the first one of the things that comes to mind when we state living things. The Earth’s magnetic field is still accepted to be the main factor for birds and other flying living beings to complete their travels correctly. The changes in migration routes, which are observed from time to time, are sometimes said to be due to the changes in the magnetic field. However, no light has been shed to this matter yet. The Earth’s magnetic field has not been sufficiently studied, and its role on small living models such as bacteria has not been adequately discussed. One of the best examples in this field is relation between the Earth’s magnetic field and “magnetotactic bacteria (MTB)”, which were discovered by Salvatore Bellini in 1963. Currently, it is claimed that magnetotactic bacteria have a widespread use in microbiology, mineralogy, limnology, physics, biophysics, chemistry, biochemistry, geology, crystallography, and astrobiology. -
Life with Compass: Diversity and Biogeography of Magnetotactic Bacteria
bs_bs_banner Environmental Microbiology (2014) 16(9), 2646–2658 doi:10.1111/1462-2920.12313 Minireview Life with compass: diversity and biogeography of magnetotactic bacteria Wei Lin,1,2 Dennis A. Bazylinski,3 Tian Xiao,2,4 the present-day biogeography of MTB, and the ruling Long-Fei Wu2,5 and Yongxin Pan1,2* parameters of their spatial distribution, will eventu- 1Biogeomagnetism Group, Paleomagnetism and ally help us predict MTB community shifts with envi- Geochronology Laboratory, Key Laboratory of the ronmental changes and assess their roles in global Earth’s Deep Interior, Institute of Geology and iron cycling. Geophysics, Chinese Academy of Sciences, Beijing 100029, China. 2France-China Bio-Mineralization and Nano-Structures Introduction Laboratory, Chinese Academy of Sciences, Beijing Iron is the fourth most common element in the Earth’s 100029, China. crust and a crucial nutrient for almost all known organ- 3 School of Life Sciences, University of Nevada at Las isms. The cycling of iron is one of the key processes in the Vegas, Las Vegas, NV, USA. Earth’s biogeochemical cycles. A number of organisms 4 Key Laboratory of Marine Ecology & Environmental synthesize iron minerals and play essential roles in global Sciences, Institute of Oceanology, Chinese Academy of iron cycling (Westbroek and de Jong, 1983; Winklhofer, Sciences, Qingdao, China. 2010). One of the most interesting examples of these 5 Laboratoire de Chimie Bactérienne, Aix-Marseille types of organisms are the magnetotactic bacteria (MTB), Université, CNRS, Marseille Cedex, France. a polyphyletic group of prokaryotes that are ubiquitous in aquatic and sedimentary environments (Bazylinski Summary and Frankel, 2004; Bazylinski et al., 2013). -
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M o Manual on IDENTIFICATION OF SCHEDULE MOLLUSCS From India RAMAKRISHN~~ AND A. DEY Zoological Survey of India, M-Block, New Alipore, Kolkota 700 053 Edited by the Director, Zoological Survey of India, Kolkata ZOOLOGICAL SURVEY OF INDIA KOLKATA CITATION Ramakrishna and Dey, A. 2003. Manual on the Identification of Schedule Molluscs from India: 1-40. (Published : Director, Zool. Surv. India, Kolkata) Published: February, 2003 ISBN: 81-85874-97-2 © Government of India, 2003 ALL RIGHTS RESERVED • No part of this publication may be reproduced, stored in a retrieval system or transmitted, in any from or by any means, electronic, mechanical, photocopying, recording or otherwise without the prior permission of the publisher. • -This book is sold subject to the condition that it shall not, by way of trade, be lent, resold hired out or otherwise disposed of without the publisher's consent, in any form of binding or cover other than that in which it is published. • The correct price of this publication is the price printed on this page. Any revised price indicated by a rubber stamp or by a sticker or by any other means is incorrect and should be unacceptable. PRICE India : Rs. 250.00 Foreign : $ (U.S.) 15, £ 10 Published at the Publication Division by the Director, Zoological Survey of India, 234/4, AJ.C. Bose Road, 2nd MSO Building (13th Floor), Nizam Palace, Kolkata -700020 and printed at Shiva Offset, Dehra Dun. Manual on IDENTIFICATION OF SCHEDULE MOLLUSCS From India 2003 1-40 CONTENTS INTRODUcrION .............................................................................................................................. 1 DEFINITION ............................................................................................................................ 2 DIVERSITY ................................................................................................................................ 2 HA.B I,.-s .. .. .. 3 VAWE ............................................................................................................................................ -
Investigation of the Magnetosome Biomineralization in Magnetotactic Bacteria Using Graphene Liquid Cell – Transmission Electron Microscopy
Nanoscale Investigation of the Magnetosome Biomineralization in Magnetotactic Bacteria using Graphene Liquid Cell – Transmission Electron Microscopy Journal: Nanoscale Manuscript ID NR-ART-10-2018-008647.R1 Article Type: Paper Date Submitted by the 27-Nov-2018 Author: Complete List of Authors: Firlar, Emre; University of Illinois at Chicago, Department of Bioengineering; University of Illinois at Chicago, Department of Mechanical and Industrial Engineering Ouy, Meagan; University of Illinois at Chicago, Department of Bioengineering Bogdanowicz, Agata; University of Illinois at Chicago, Department of Bioengineering Covnot, Leigha; University of Illinois at Chicago, Department of Bioengineering Song, Boao; University of Illinois at Chicago, Mechanical Engineering Department Nadkarni, Yash; University of Illinois at Chicago, Department of Bioengineering Shahbazian-Yassar, Reza; University of Illinois at Chicago, Mechanical and Industrial Engineering; University of Illinois at Chicago Shokuhfar, Tolou; University of Illinois at Chicago, Department of Bioengineering; Michigan Technological University, Department of Mechanical Engineering Page 1 of 8 Please doNanoscale not adjust margins Journal Name ARTICLE Investigation of the Magnetosome Biomineralization in Magnetotactic Bacteria using Graphene Liquid Cell – Transmission Electron Microscopy Received 00th January 20xx, Accepted 00th January 20xx Emre Firlara,b*, Meagan Ouya, Agata Bogdanowicza, Leigha Covnota, Boao Songb, Yash Nadkarnia, DOI: 10.1039/x0xx00000x Reza Shahbazian-Yassarb*, -
Meg-Bitten Bone
The ECPHORA The Newsletter of the Calvert Marine Museum Fossil Club Volume 32 Number 2 June 2017 Meg-Bitten Bone Features Meg-Bitten Whale Bone The Bruce Museum The State Museum of New Jersey Inside Micro-Teeth Donated Fecal Pellets in Ironstone Starfish Eocene Bird Tracks Bear and Shark Tooth Over-Achieving Shark Turtle Myth Horse Foot Bones Meg 7 Months Apart Capacious Coprolite Small Dolphin Radius Otter Cam Pen Shell Miocene Volute Peccary Scapula Found Club Events Pegmatite from C. Cliffs This small piece of fossil whale bone was found along the Potomac Crayfish on the Potomac River by Paul Murdoch. It is noteworthy because two of its sides are Hadrodelphis Caudals strongly marked by parallel grooves cut into the bone, prior to it Fractured Caudal becoming fossilized, by the serrations on the cutting edge of the teeth What is nice about large bite of Carcharocles megalodon. The thickness of the bone suggests baleen marks on whale bone from this whale in origin, but which bone remains unknown. Below, serrated locality is that there is no other edge of C. megalodon tooth. Photos by S. Godfrey. ☼ shark with serrated teeth large enough (right) to mark fossil bone thusly; confirming a meg/cetacean encounter. It is not known from this piece of bone if this was a predatory or scavenging event. Metric scale. CALVERT MARINE MUSEUM www.calvertmarinemuseum.com 2 The Ecphora June 2017 Micros Donated to CMM Adrien Malick found and donated this piece of limonite that preserves impressions of fecal? pellets (upper left of image; enlarged below). (Limonite is a sedimentary rock made of iron oxyhydroxides.) Enlarged view of what appear to be impressions of millimeter-scale fecal pellets in limonite. -
A New Insight on the Symbiotic Association Between the Fan Mussel Pinna Rudis and the Shrimp Pontonia Pinnophylax in the Azores (NE Atlantic)
Global Journal of Zoology Joao P Barreiros1, Ricardo JS Pacheco2 Short Communication and Sílvia C Gonçalves2,3 1CE3C /ABG, Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity A New Insight on the Symbiotic Group. University of the Azores, 9700-042 Angra do Heroísmo, Portugal Association between the Fan 2MARE, Marine and Environmental Sciences Centre, ESTM, Polytechnic Institute of Leiria, 2520-641 Peniche, Portugal Mussel Pinna Rudis and the Shrimp 3MARE, Marine and Environmental Sciences Centre, Department of Life Sciences, Faculty of Sciences Pontonia Pinnophylax in the Azores and Technology, University of Coimbra, 3004-517 Coimbra, Portugal (NE Atlantic) Dates: Received: 05 July, 2016; Accepted: 13 July, 2016; Published: 14 July, 2016 collect fan mussels which implied that the presence of the shrimps was *Corresponding author: João P. Barreiros, evaluated through underwater observation of the shell (when slightly CE3C /ABG, Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity opened) or through counter light (by means of pointing a lamp). A Group. University of the Azores, 9700-042 Angra do previous note on this work was reported by the authors [4]. Presently, Heroísmo, Portugal, E-mail; [email protected] the authors are indeed collecting specimens of P. rudis in the same www.peertechz.com areas referred here for a more comprehensive project on symbiotic mutualistic/ relationships in several subtidal Azorean animals (work Communication in progress). Bivalves Pinnidae are typical hosts of Pontoniinae shrimps. Pinna rudis is widely distributed along Atlantic and Several species of this family were documented to harbor these Mediterranean waters but previous records of the association decapods inside their shells, especially shrimps from the genus between this bivalve and P. -
A New Insight on the Symbiotic Association Between the Fan Mussel Pinna Rudis and the Shrimp Pontonia Pinnophylax in the Azores (NE Atlantic)
Global Journal of Zoology Joao P Barreiros1, Ricardo JS Pacheco2 Short Communication and Sílvia C Gonçalves2,3 1CE3C /ABG, Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity A New Insight on the Symbiotic Group. University of the Azores, 9700-042 Angra do Heroísmo, Portugal Association between the Fan 2MARE, Marine and Environmental Sciences Centre, ESTM, Polytechnic Institute of Leiria, 2520-641 Peniche, Portugal Mussel Pinna Rudis and the Shrimp 3MARE, Marine and Environmental Sciences Centre, Department of Life Sciences, Faculty of Sciences Pontonia Pinnophylax in the Azores and Technology, University of Coimbra, 3004-517 Coimbra, Portugal (NE Atlantic) Dates: Received: 05 July, 2016; Accepted: 13 July, 2016; Published: 14 July, 2016 collect fan mussels which implied that the presence of the shrimps was *Corresponding author: João P. Barreiros, evaluated through underwater observation of the shell (when slightly CE3C /ABG, Centre for Ecology, Evolution and Environmental Changes, Azorean Biodiversity opened) or through counter light (by means of pointing a lamp). A Group. University of the Azores, 9700-042 Angra do previous note on this work was reported by the authors [4]. Presently, Heroísmo, Portugal, E-mail; [email protected] the authors are indeed collecting specimens of P. rudis in the same ISSN: 2640-7930 areas referred here for a more comprehensive project on symbiotic www.peertechz.com mutualistic/ relationships in several subtidal Azorean animals (work in progress). Communication Pinna rudis is widely distributed along Atlantic and Mediterranean waters but previous records of the association Bivalves Pinnidae are typical hosts of Pontoniinae shrimps. between this bivalve and P. pinnophylax were unknown, despite the Several species of this family were documented to harbor these existence of association records with Pinna nobilis [1,3,5]. -
Magnetic Properties of Uncultivated Magnetotactic Bacteria and Their Contribution to a Stratified Estuary Iron Cycle
ARTICLE Received 6 Feb 2014 | Accepted 25 Jul 2014 | Published 1 Sep 2014 DOI: 10.1038/ncomms5797 Magnetic properties of uncultivated magnetotactic bacteria and their contribution to a stratified estuary iron cycle A.P. Chen1, V.M. Berounsky2, M.K. Chan3, M.G. Blackford4, C. Cady5,w, B.M. Moskowitz6, P. Kraal7, E.A. Lima8, R.E. Kopp9, G.R. Lumpkin4, B.P. Weiss8, P. Hesse1 & N.G.F. Vella10 Of the two nanocrystal (magnetosome) compositions biosynthesized by magnetotactic bacteria (MTB), the magnetic properties of magnetite magnetosomes have been extensively studied using widely available cultures, while those of greigite magnetosomes remain poorly known. Here we have collected uncultivated magnetite- and greigite-producing MTB to determine their magnetic coercivity distribution and ferromagnetic resonance (FMR) spectra and to assess the MTB-associated iron flux. We find that compared with magnetite-producing MTB cultures, FMR spectra of uncultivated MTB are characterized by a wider empirical parameter range, thus complicating the use of FMR for fossilized magnetosome (magnetofossil) detection. Furthermore, in stark contrast to putative Neogene greigite magnetofossil records, the coercivity distributions for greigite-producing MTB are fundamentally left-skewed with a lower median. Lastly, a comparison between the MTB-associated iron flux in the investigated estuary and the pyritic-Fe flux in the Black Sea suggests MTB play an important, but heretofore overlooked role in euxinic marine system iron cycle. 1 Department of Environment and Geography, Macquarie University, North Ryde, New South Wales 2109, Australia. 2 Graduate School of Oceanography, University of Rhode Island, Narragansett, Rhode Island 02882, USA. 3 School of Physics and Astronomy, University of Minnesota, Minneapolis, Minnesota 55455, USA. -
A Perspective on Underlying Crystal Growth Mechanisms in Biomineralization: Solution Mediated Growth Versus Nanosphere Particle Accretion
CrystEngComm A perspective on underlying crystal growth mechanisms in biomineralization: solution mediated growth versus nanosphere particle accretion Journal: CrystEngComm Manuscript ID: CE-HIG-07-2014-001474.R1 Article Type: Highlight Date Submitted by the Author: 01-Dec-2014 Complete List of Authors: Gal, Assaf; Weizmann Institute of Science, Structural Biology Weiner, Steve; Weizmann Institute of Science, Structural Biology Addadi, Lia; Weizmann Institute of Science, Structural Biology Page 1 of 23 CrystEngComm A perspective on underlying crystal growth mechanisms in biomineralization: solution mediated growth versus nanosphere particle accretion Assaf Gal, Steve Weiner, and Lia Addadi Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel 76100 Abstract Many organisms form crystals from transient amorphous precursor phases. In the cases where the precursor phases were imaged, they consist of nanosphere particles. Interestingly, some mature biogenic crystals also have nanosphere particle morphology, but some are characterized by crystallographic faces that are smooth at the nanometer level. There are also biogenic crystals that have both crystallographic faces and nanosphere particle morphology. This highlight presents a working hypothesis, stating that some biomineralization processes involve growth by nanosphere particle accretion, where amorphous nanoparticles are incorporated as such into growing crystals and preserve their morphology upon crystallization. This process produces biogenic crystals with a nanosphere particle morphology. Other biomineralization processes proceed by ion-by-ion growth, and some cases of biological crystal growth involve both processes. We also identify several biomineralization processes which do not seem to fit this working hypothesis. It is our hope that this highlight will inspire studies that will shed more light on the underlying crystallization mechanisms in biology. -
Properties of Magnetosome Suspension Under the in Uence Of
Vol. 127 (2015) ACTA PHYSICA POLONICA A No. 2 Proceedings of the European Conference Physics of Magnetism, Pozna« 2014 Properties of Magnetosome Suspension under the Inuence of Magnetic Field A. Józefczaka;*, M. Mol£anb, Z. Rozynekc;d, T. Hornowskia, A. Skumiela, M. Timkob, J. Tóthováe, P. Kop£anskýb and B. Leszczy«skia;f aInstitute of Acoustics, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Pozna«, Poland bInstitute of Experimental Physics, Slovak Academy of Sciences, Watsonova 47, 040 01 Ko²ice, Slovakia cInstitute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warszawa, Poland dDepartment of Physics, NTNU, Høgskoleringen 5, NO-7491 Trondheim, Norway eDepartment of Physics, Technical University of Ko²ice, Park Komenského 2, 042 00 Ko²ice, Slovakia f NanoBioMedical Centre, Adam Mickiewicz University, Umultowska 85, 61-614 Pozna«, Poland The magnetotactic bacteria synthesize chains of nanosized magnetic particles that function as a compass nee- dle to navigate in the direction of the earth's magnetic eld. Magnetosomes are bacterial magnetic nanoparticles containing iron mineral crystals of magnetite or greigite, enveloped by a natural biological membrane. The objec- tive of the work is to study the inuence of magnetic eld on rheology and acoustic properties of magnetosome suspension. Experimental results show a clear eect of the external magnetic eld on the acoustic parameters such as velocity and attenuation of ultrasonic wave, and the viscosity of the suspension, arising from the biogenic magnetic particles aggregation. DOI: 10.12693/APhysPolA.127.629 PACS: 75.50.Mm, 43.35.Bf 1. Introduction Magnetosome suspension properties change under the inuence of the magnetic eld, similar to that of magnetic uid. -
TREATISE ONLINE Number 48
TREATISE ONLINE Number 48 Part N, Revised, Volume 1, Chapter 31: Illustrated Glossary of the Bivalvia Joseph G. Carter, Peter J. Harries, Nikolaus Malchus, André F. Sartori, Laurie C. Anderson, Rüdiger Bieler, Arthur E. Bogan, Eugene V. Coan, John C. W. Cope, Simon M. Cragg, José R. García-March, Jørgen Hylleberg, Patricia Kelley, Karl Kleemann, Jiří Kříž, Christopher McRoberts, Paula M. Mikkelsen, John Pojeta, Jr., Peter W. Skelton, Ilya Tëmkin, Thomas Yancey, and Alexandra Zieritz 2012 Lawrence, Kansas, USA ISSN 2153-4012 (online) paleo.ku.edu/treatiseonline PART N, REVISED, VOLUME 1, CHAPTER 31: ILLUSTRATED GLOSSARY OF THE BIVALVIA JOSEPH G. CARTER,1 PETER J. HARRIES,2 NIKOLAUS MALCHUS,3 ANDRÉ F. SARTORI,4 LAURIE C. ANDERSON,5 RÜDIGER BIELER,6 ARTHUR E. BOGAN,7 EUGENE V. COAN,8 JOHN C. W. COPE,9 SIMON M. CRAgg,10 JOSÉ R. GARCÍA-MARCH,11 JØRGEN HYLLEBERG,12 PATRICIA KELLEY,13 KARL KLEEMAnn,14 JIřÍ KřÍž,15 CHRISTOPHER MCROBERTS,16 PAULA M. MIKKELSEN,17 JOHN POJETA, JR.,18 PETER W. SKELTON,19 ILYA TËMKIN,20 THOMAS YAncEY,21 and ALEXANDRA ZIERITZ22 [1University of North Carolina, Chapel Hill, USA, [email protected]; 2University of South Florida, Tampa, USA, [email protected], [email protected]; 3Institut Català de Paleontologia (ICP), Catalunya, Spain, [email protected], [email protected]; 4Field Museum of Natural History, Chicago, USA, [email protected]; 5South Dakota School of Mines and Technology, Rapid City, [email protected]; 6Field Museum of Natural History, Chicago, USA, [email protected]; 7North -
Studies on Molluscan Shells: Contributions from Microscopic and Analytical Methods
Micron 40 (2009) 669–690 Contents lists available at ScienceDirect Micron journal homepage: www.elsevier.com/locate/micron Review Studies on molluscan shells: Contributions from microscopic and analytical methods Silvia Maria de Paula, Marina Silveira * Instituto de Fı´sica, Universidade de Sa˜o Paulo, 05508-090 Sa˜o Paulo, SP, Brazil ARTICLE INFO ABSTRACT Article history: Molluscan shells have always attracted the interest of researchers, from biologists to physicists, from Received 25 April 2007 paleontologists to materials scientists. Much information is available at present, on the elaborate Received in revised form 7 May 2009 architecture of the shell, regarding the various Mollusc classes. The crystallographic characterization of Accepted 10 May 2009 the different shell layers, as well as their physical and chemical properties have been the subject of several investigations. In addition, many researches have addressed the characterization of the biological Keywords: component of the shell and the role it plays in the hard exoskeleton assembly, that is, the Mollusca biomineralization process. All these topics have seen great advances in the last two or three decades, Shell microstructures expanding our knowledge on the shell properties, in terms of structure, functions and composition. This Electron microscopy Infrared spectroscopy involved the use of a range of specialized and modern techniques, integrating microscopic methods with X-ray diffraction biochemistry, molecular biology procedures and spectroscopy. However, the factors governing synthesis Electron diffraction of a specific crystalline carbonate phase in any particular layer of the shell and the interplay between organic and inorganic components during the biomineral assembly are still not widely known. This present survey deals with microstructural aspects of molluscan shells, as disclosed through use of scanning electron microscopy and related analytical methods (microanalysis, X-ray diffraction, electron diffraction and infrared spectroscopy).