A Perspective on Underlying Crystal Growth Mechanisms in Biomineralization: Solution Mediated Growth Versus Nanosphere Particle Accretion
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Magnetotactic Bacteria and Their Application in Medicine
Chem cal ist si ry y & h P B f i o o Dasdag and Bektas. J Phys Chem Biophys 2014, 4:2 p l h a Journal of Physical Chemistry & y n s r DOI: 10.4172/2161-0398.1000141 i u c o s J ISSN: 2161-0398 Biophysics ResearchReview Article Article OpenOpen Access Access Magnetotactic Bacteria and their Application in Medicine Suleyman Dasdag1* and Hava Bektas2 1Department of Biophysics, Medical School of Dicle University, Diyarbakir, Turkey 2Department of Biophysics, Medical School of Yuzuncu Yil University, Van / Turkey Abstract It is a known fact how the magnetic field of the Earth is very important for life. Relation between living systems and the earth magnetic field has been investigated for many years. Birds and their migration routes are the first one of the things that comes to mind when we state living things. The Earth’s magnetic field is still accepted to be the main factor for birds and other flying living beings to complete their travels correctly. The changes in migration routes, which are observed from time to time, are sometimes said to be due to the changes in the magnetic field. However, no light has been shed to this matter yet. The Earth’s magnetic field has not been sufficiently studied, and its role on small living models such as bacteria has not been adequately discussed. One of the best examples in this field is relation between the Earth’s magnetic field and “magnetotactic bacteria (MTB)”, which were discovered by Salvatore Bellini in 1963. Currently, it is claimed that magnetotactic bacteria have a widespread use in microbiology, mineralogy, limnology, physics, biophysics, chemistry, biochemistry, geology, crystallography, and astrobiology. -
Life with Compass: Diversity and Biogeography of Magnetotactic Bacteria
bs_bs_banner Environmental Microbiology (2014) 16(9), 2646–2658 doi:10.1111/1462-2920.12313 Minireview Life with compass: diversity and biogeography of magnetotactic bacteria Wei Lin,1,2 Dennis A. Bazylinski,3 Tian Xiao,2,4 the present-day biogeography of MTB, and the ruling Long-Fei Wu2,5 and Yongxin Pan1,2* parameters of their spatial distribution, will eventu- 1Biogeomagnetism Group, Paleomagnetism and ally help us predict MTB community shifts with envi- Geochronology Laboratory, Key Laboratory of the ronmental changes and assess their roles in global Earth’s Deep Interior, Institute of Geology and iron cycling. Geophysics, Chinese Academy of Sciences, Beijing 100029, China. 2France-China Bio-Mineralization and Nano-Structures Introduction Laboratory, Chinese Academy of Sciences, Beijing Iron is the fourth most common element in the Earth’s 100029, China. crust and a crucial nutrient for almost all known organ- 3 School of Life Sciences, University of Nevada at Las isms. The cycling of iron is one of the key processes in the Vegas, Las Vegas, NV, USA. Earth’s biogeochemical cycles. A number of organisms 4 Key Laboratory of Marine Ecology & Environmental synthesize iron minerals and play essential roles in global Sciences, Institute of Oceanology, Chinese Academy of iron cycling (Westbroek and de Jong, 1983; Winklhofer, Sciences, Qingdao, China. 2010). One of the most interesting examples of these 5 Laboratoire de Chimie Bactérienne, Aix-Marseille types of organisms are the magnetotactic bacteria (MTB), Université, CNRS, Marseille Cedex, France. a polyphyletic group of prokaryotes that are ubiquitous in aquatic and sedimentary environments (Bazylinski Summary and Frankel, 2004; Bazylinski et al., 2013). -
Four Hundred Million Years of Silica Biomineralization in Land Plants
Four hundred million years of silica biomineralization in land plants Elizabeth Trembath-Reicherta,1, Jonathan Paul Wilsonb, Shawn E. McGlynna,c, and Woodward W. Fischera aDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125; bDepartment of Biology, Haverford College, Haverford, PA 19041; and cGraduate School of Science and Engineering, Tokyo Metropolitan University, Hachioji-shi, Tokyo 192-0397, Japan Edited by Thure E. Cerling, University of Utah, Salt Lake City, UT, and approved February 20, 2015 (received for review January 7, 2015) Biomineralization plays a fundamental role in the global silicon Silica is widely used within plants for structural support and cycle. Grasses are known to mobilize significant quantities of Si in pathogen defense (19–21), but it remains a poorly understood the form of silica biominerals and dominate the terrestrial realm aspect of plant biology. Recent work on the angiosperm Oryza today, but they have relatively recent origins and only rose to sativa demonstrated that silica accumulation is facilitated by taxonomic and ecological prominence within the Cenozoic Era. transmembrane proteins expressed in root cells (21–24). Phy- This raises questions regarding when and how the biological silica logenetic analysis revealed that these silicon transport proteins cycle evolved. To address these questions, we examined silica were derived from a diverse family of modified aquaporins that abundances of extant members of early-diverging land plant include arsenite and glycerol transporters (19, 21, 25, 26). A clades, which show that silica biomineralization is widespread different member of this aquaporin family was recently identi- across terrestrial plant linages. Particularly high silica abundances fied that enables silica uptake in the horsetail Equisetum,an are observed in lycophytes and early-diverging ferns. -
Investigation of the Magnetosome Biomineralization in Magnetotactic Bacteria Using Graphene Liquid Cell – Transmission Electron Microscopy
Nanoscale Investigation of the Magnetosome Biomineralization in Magnetotactic Bacteria using Graphene Liquid Cell – Transmission Electron Microscopy Journal: Nanoscale Manuscript ID NR-ART-10-2018-008647.R1 Article Type: Paper Date Submitted by the 27-Nov-2018 Author: Complete List of Authors: Firlar, Emre; University of Illinois at Chicago, Department of Bioengineering; University of Illinois at Chicago, Department of Mechanical and Industrial Engineering Ouy, Meagan; University of Illinois at Chicago, Department of Bioengineering Bogdanowicz, Agata; University of Illinois at Chicago, Department of Bioengineering Covnot, Leigha; University of Illinois at Chicago, Department of Bioengineering Song, Boao; University of Illinois at Chicago, Mechanical Engineering Department Nadkarni, Yash; University of Illinois at Chicago, Department of Bioengineering Shahbazian-Yassar, Reza; University of Illinois at Chicago, Mechanical and Industrial Engineering; University of Illinois at Chicago Shokuhfar, Tolou; University of Illinois at Chicago, Department of Bioengineering; Michigan Technological University, Department of Mechanical Engineering Page 1 of 8 Please doNanoscale not adjust margins Journal Name ARTICLE Investigation of the Magnetosome Biomineralization in Magnetotactic Bacteria using Graphene Liquid Cell – Transmission Electron Microscopy Received 00th January 20xx, Accepted 00th January 20xx Emre Firlara,b*, Meagan Ouya, Agata Bogdanowicza, Leigha Covnota, Boao Songb, Yash Nadkarnia, DOI: 10.1039/x0xx00000x Reza Shahbazian-Yassarb*, -
Biomineralization and Global Biogeochemical Cycles Philippe Van Cappellen Faculty of Geosciences, Utrecht University P.O
1122 Biomineralization and Global Biogeochemical Cycles Philippe Van Cappellen Faculty of Geosciences, Utrecht University P.O. Box 80021 3508 TA Utrecht, The Netherlands INTRODUCTION Biological activity is a dominant force shaping the chemical structure and evolution of the earth surface environment. The presence of an oxygenated atmosphere- hydrosphere surrounding an otherwise highly reducing solid earth is the most striking consequence of the rise of life on earth. Biological evolution and the functioning of ecosystems, in turn, are to a large degree conditioned by geophysical and geological processes. Understanding the interactions between organisms and their abiotic environment, and the resulting coupled evolution of the biosphere and geosphere is a central theme of research in biogeology. Biogeochemists contribute to this understanding by studying the transformations and transport of chemical substrates and products of biological activity in the environment. Biogeochemical cycles provide a general framework in which geochemists organize their knowledge and interpret their data. The cycle of a given element or substance maps out the rates of transformation in, and transport fluxes between, adjoining environmental reservoirs. The temporal and spatial scales of interest dictate the selection of reservoirs and processes included in the cycle. Typically, the need for a detailed representation of biological process rates and ecosystem structure decreases as the spatial and temporal time scales considered increase. Much progress has been made in the development of global-scale models of biogeochemical cycles. Although these models are based on fairly simple representations of the biosphere and hydrosphere, they account for the large-scale changes in the composition, redox state and biological productivity of the earth surface environment that have occurred over geological time. -
Magnetic Properties of Uncultivated Magnetotactic Bacteria and Their Contribution to a Stratified Estuary Iron Cycle
ARTICLE Received 6 Feb 2014 | Accepted 25 Jul 2014 | Published 1 Sep 2014 DOI: 10.1038/ncomms5797 Magnetic properties of uncultivated magnetotactic bacteria and their contribution to a stratified estuary iron cycle A.P. Chen1, V.M. Berounsky2, M.K. Chan3, M.G. Blackford4, C. Cady5,w, B.M. Moskowitz6, P. Kraal7, E.A. Lima8, R.E. Kopp9, G.R. Lumpkin4, B.P. Weiss8, P. Hesse1 & N.G.F. Vella10 Of the two nanocrystal (magnetosome) compositions biosynthesized by magnetotactic bacteria (MTB), the magnetic properties of magnetite magnetosomes have been extensively studied using widely available cultures, while those of greigite magnetosomes remain poorly known. Here we have collected uncultivated magnetite- and greigite-producing MTB to determine their magnetic coercivity distribution and ferromagnetic resonance (FMR) spectra and to assess the MTB-associated iron flux. We find that compared with magnetite-producing MTB cultures, FMR spectra of uncultivated MTB are characterized by a wider empirical parameter range, thus complicating the use of FMR for fossilized magnetosome (magnetofossil) detection. Furthermore, in stark contrast to putative Neogene greigite magnetofossil records, the coercivity distributions for greigite-producing MTB are fundamentally left-skewed with a lower median. Lastly, a comparison between the MTB-associated iron flux in the investigated estuary and the pyritic-Fe flux in the Black Sea suggests MTB play an important, but heretofore overlooked role in euxinic marine system iron cycle. 1 Department of Environment and Geography, Macquarie University, North Ryde, New South Wales 2109, Australia. 2 Graduate School of Oceanography, University of Rhode Island, Narragansett, Rhode Island 02882, USA. 3 School of Physics and Astronomy, University of Minnesota, Minneapolis, Minnesota 55455, USA. -
An Overview of Biomineralization Processes and the Problem of The
11 An Overview of Biomineralization Processes and the Problem of the Vital Effect Steve Weiner Department of Structural Biology Weizmann Institute of Science 76100 Rehovot Israel Patricia M. Dove Department of GeoSciences Virginia Tech Blacksburg, Virginia 24061 U.S.A. “Biomineralization links soft organic tissues, which are compositionally akin to the atmosphere and oceans, with the hard materials of the solid Earth. It provides organisms with skeletons and shells while they are alive, and when they die these are deposited as sediment in environments from river plains to the deep ocean floor. It is also these hard, resistant products of life which are mainly responsible for the Earth’s fossil record. Consequently, biomineralization involves biologists, chemists, and geologists in interdisciplinary studies at one of the interfaces between Earth and life.” (Leadbeater and Riding 1986) INTRODUCTION Biomineralization refers to the processes by which organisms form minerals. The control exerted by many organisms over mineral formation distinguishes these processes from abiotic mineralization. The latter was the primary focus of earth scientists over the last century, but the emergence of biogeochemistry and the urgency of understanding the past and future evolution of the Earth are moving biological mineralization to the forefront of various fields of science, including the earth sciences. The growth in biogeochemistry has led to a number of new exciting research areas where the distinctions between the biological, chemical, and earth sciences disciplines melt away. Of the wonderful topics that are receiving renewed attention, the study of biomineral formation is perhaps the most fascinating. Truly at the interface of earth and life, biomineralization is a discipline that is certain to see major advancements as a new generation of scientists brings cross-disciplinary training and new experimental and computational methods to the most daunting problems. -
Effect of Ph Change on Exoskeletons of Selected Saltwater Organisms Which Rely on Calcium Fixation Derya Z
Journal of Emerging Investigators Effect of pH change on exoskeletons of selected saltwater organisms which rely on calcium fixation Derya Z. Tansel1, Ariadna Arreaza2, Berrin Tansel2 1 Coral Gables Senior High, Coral Gables, FL 2 Florida International University, Miami, FL Summary increase in H+ concentration in the last 200 years (1,2,3). The projections for rising atmospheric carbon dioxide According to atmospheric CO2 projections, ocean surface concentrations indicate that the pH levels of the ocean pH levels are estimated to decrease by 0.3-0.4 units by surface could decrease by 0.3-0.4 units by the end of the end of the 21st century. This decrease corresponds the 21st century. The objective of this research was to to an increase in the hydrogen ion concentration of about evaluate the effect of pH on the exoskeletons of six aquatic organisms commonly found in South Florida 100-150% above the levels in the late 1800s (4,5). The coastal waters. The exoskeleton samples studied were impacts of ocean acidification can be 10–50% higher from the common nutmeg (Cancellaria reticulate), near coastal areas due to proximity to anthropogenic lettered olive (Oliva sayana), stiff pen shell (Atrina rigida), sources (6). kitten’s paw (Plicatulidae), fan coral (Gorgonia ventalina), Although some species can tolerate pH changes, and common slipper shell (Crepidula fornicate). The many marine organisms and processes can be impacted, exoskeleton samples were exposed to saltwater (34% including the composition of communities and food webs salinity) at pH levels ranging from 8.3 to 6.0 for 5 days. -
Chitosan-Based Biomimetically Mineralized Composite Materials in Human Hard Tissue Repair
molecules Review Chitosan-Based Biomimetically Mineralized Composite Materials in Human Hard Tissue Repair Die Hu 1,2 , Qian Ren 1,2, Zhongcheng Li 1,2 and Linglin Zhang 1,2,* 1 State Key Laboratory of Oral Diseases & National Clinical Research Centre for Oral Disease, Sichuan University, Chengdu 610000, China; [email protected] (D.H.); [email protected] (Q.R.); [email protected] (Z.L.) 2 Department of Cariology and Endodontics, West China Hospital of Stomatology, Sichuan University, Chengdu 610000, China * Correspondence: [email protected] or [email protected]; Tel.: +86-028-8550-3470 Academic Editors: Mohamed Samir Mohyeldin, Katarína Valachová and Tamer M Tamer Received: 16 September 2020; Accepted: 16 October 2020; Published: 19 October 2020 Abstract: Chitosan is a natural, biodegradable cationic polysaccharide, which has a similar chemical structure and similar biological behaviors to the components of the extracellular matrix in the biomineralization process of teeth or bone. Its excellent biocompatibility, biodegradability, and polyelectrolyte action make it a suitable organic template, which, combined with biomimetic mineralization technology, can be used to develop organic-inorganic composite materials for hard tissue repair. In recent years, various chitosan-based biomimetic organic-inorganic composite materials have been applied in the field of bone tissue engineering and enamel or dentin biomimetic repair in different forms (hydrogels, fibers, porous scaffolds, microspheres, etc.), and the inorganic components of the composites are usually biogenic minerals, such as hydroxyapatite, other calcium phosphate phases, or silica. These composites have good mechanical properties, biocompatibility, bioactivity, osteogenic potential, and other biological properties and are thus considered as promising novel materials for repairing the defects of hard tissue. -
Properties of Magnetosome Suspension Under the in Uence Of
Vol. 127 (2015) ACTA PHYSICA POLONICA A No. 2 Proceedings of the European Conference Physics of Magnetism, Pozna« 2014 Properties of Magnetosome Suspension under the Inuence of Magnetic Field A. Józefczaka;*, M. Mol£anb, Z. Rozynekc;d, T. Hornowskia, A. Skumiela, M. Timkob, J. Tóthováe, P. Kop£anskýb and B. Leszczy«skia;f aInstitute of Acoustics, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Pozna«, Poland bInstitute of Experimental Physics, Slovak Academy of Sciences, Watsonova 47, 040 01 Ko²ice, Slovakia cInstitute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warszawa, Poland dDepartment of Physics, NTNU, Høgskoleringen 5, NO-7491 Trondheim, Norway eDepartment of Physics, Technical University of Ko²ice, Park Komenského 2, 042 00 Ko²ice, Slovakia f NanoBioMedical Centre, Adam Mickiewicz University, Umultowska 85, 61-614 Pozna«, Poland The magnetotactic bacteria synthesize chains of nanosized magnetic particles that function as a compass nee- dle to navigate in the direction of the earth's magnetic eld. Magnetosomes are bacterial magnetic nanoparticles containing iron mineral crystals of magnetite or greigite, enveloped by a natural biological membrane. The objec- tive of the work is to study the inuence of magnetic eld on rheology and acoustic properties of magnetosome suspension. Experimental results show a clear eect of the external magnetic eld on the acoustic parameters such as velocity and attenuation of ultrasonic wave, and the viscosity of the suspension, arising from the biogenic magnetic particles aggregation. DOI: 10.12693/APhysPolA.127.629 PACS: 75.50.Mm, 43.35.Bf 1. Introduction Magnetosome suspension properties change under the inuence of the magnetic eld, similar to that of magnetic uid. -
Biomineralization and Evolutionary History Andrew H
1 111 Biomineralization and Evolutionary History Andrew H. Knoll Department of Organismic and Evolutionary Biology Harvard University Cambridge, Massachusetts, 02138 U.S.A. INTRODUCTION The Dutch ethologist Niko Tinbergen famously distinguished between proximal and ultimate explanations in biology. Proximally, biologists seek a mechanistic understanding of how organisms function; most of this volume addresses the molecular and physiological bases of biomineralization. But while much of biology might be viewed as a particularly interesting form of chemistry, it is more than that. Biology is chemistry with a history, requiring that proximal explanations be grounded in ultimate, or evolutionary, understanding. The physiological pathways by which organisms precipitate skeletal minerals and the forms and functions of the skeletons they fashion have been shaped by natural selection through geologic time, and all have constrained continuing evolution in skeleton-forming clades. In this chapter, I outline some major patterns of skeletal evolution inferred from phylogeny and fossils (Figure 1), highlighting ways that our improving mechanistic knowledge of biomineralization can help us to understand this evolutionary record (see Leadbetter and Riding 1986; Lowenstam and Weiner 1989; Carter 1990; and Simkiss and Wilbur 1989 for earlier reviews). Figure 1. A geologic time scale for the past 1000 million years, showing the principal time divisions used in Earth science and the timing of major evolutionary events discussed in this chapter. Earlier intervals of time—the Mesoproterozoic (1600–1000 million years ago) and Paleoproterozoic (2500– 1600 million years ago) eras of the Proterozoic Eon and the Archean Eon (> 2500 million years ago)— are not shown. Time scale after Remane (2000). -
Biomineralization & Biominerals “It's a Hard Life”
Maria Isabel López Fierro Biomineralization Literature Review & Biominerals Chair: Marc A. Meyers “It’s a hard life” Joanna McKittrick Jan Talbot Image credit: Out Of The Blue Aquaculture Ltd 1 Outline Sponge Spicule Introduction & History Basic Biomineralization Principles Saturation, Nucleation, Growth, & Organic Matrix Image credit: http://www.choijinhyuk.com Bleached Coral Biominerals & Biomineralization Models Calcium Carbonate Shells: Nacre Silica Image credit: jroy.abenaza.com2 Sponge Spicule Hydroxyapatite Bone Why do we need to understand biomineralization? Summary & Conclusions Introduction & History of Biomineralization 3 Introduction: The Process Biomineralization is the process by which living form and influence the precipitation of minerals. 5µm No single or ‘grand’ •Crystals from the inner shell layer of the Eastern mechanism. oyster onto a metal implant. •sheets converge forming a“rosette” structure. Combination of efforts •Organic matrix appears like “glue.” from cells, producing Image credit: http://www.scienceasart.org organic and inorganic Skinner and Jahren (2003)4 molecules that combine in various structural ways to form an unique material. Introduction: Why mineralize? Evolution of Biomineralization has provided organisms with a strong building material. o Minerals are stiff and brittle (& cheap energy wise) o Organic materials are soft and pliable Functions include: v Strength & Integrity v Protection. v Mobility v Storage - Biominerals are ion reservoir for cellular functions. v Cutting and grinding v Buoyancy v Optical, magnetic and gravity sensing 5 History of biominerals First biomineralization evidence from microbial stromatolites - 3500M years ago Not controlled deposition of inorganic solids 560M years ago - organisms from different phyla evolved the ability Runnegar and Bengtson (1992) to form different minerals. To date there are 64+ 6 biominerals identified.