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Parallel Loss of Introns in the ABCB1 Gene in Angiosperms Rajiv K
Parvathaneni et al. BMC Evolutionary Biology (2017) 17:238 DOI 10.1186/s12862-017-1077-x RESEARCHARTICLE Open Access Parallel loss of introns in the ABCB1 gene in angiosperms Rajiv K. Parvathaneni1,5†, Victoria L. DeLeo2,6†, John J. Spiekerman3, Debkanta Chakraborty4 and Katrien M. Devos1,3,4* Abstract Background: The presence of non-coding introns is a characteristic feature of most eukaryotic genes. While the size of the introns, number of introns per gene and the number of intron-containing genes can vary greatly between sequenced eukaryotic genomes, the structure of a gene with reference to intron presence and positions is typically conserved in closely related species. Unexpectedly, the ABCB1 (ATP-Binding Cassette Subfamily B Member 1) gene which encodes a P-glycoprotein and underlies dwarfing traits in maize (br2), sorghum (dw3) and pearl millet (d2) displayed considerable variation in intron composition. Results: An analysis of the ABCB1 genestructurein80angiospermsrevealedthatthenumberofintrons ranged from one to nine. All introns in ABCB1 underwent either a one-time loss (single loss in one lineage/ species) or multiple independent losses (parallel loss in two or more lineages/species) with the majority of losses occurring within the grass family. In contrast, the structure of the closest homolog to ABCB1, ABCB19, remained constant in the majority of angiosperms analyzed. Using known phylogenetic relationships within the grasses, we determined the ancestral branch-points where the losses occurred. Intron 7, the longest intron, was lost in only a single species, Mimulus guttatus, following duplication of ABCB1. Semiquantitative PCR showed that the M. guttatus ABCB1 gene copy without intron 7 had significantly lower transcript levels than the gene copy with intron 7. -
Guidelines for Using the Checklist
Guidelines for using the checklist Cymbopogon excavatus (Hochst.) Stapf ex Burtt Davy N 9900720 Synonyms: Andropogon excavatus Hochst. 47 Common names: Breëblaarterpentyngras A; Broad-leaved turpentine grass E; Breitblättriges Pfeffergras G; dukwa, heng’ge, kamakama (-si) J Life form: perennial Abundance: uncommon to locally common Habitat: various Distribution: southern Africa Notes: said to smell of turpentine hence common name E2 Uses: used as a thatching grass E3 Cited specimen: Giess 3152 Reference: 37; 47 Botanical Name: The grasses are arranged in alphabetical or- Rukwangali R der according to the currently accepted botanical names. This Shishambyu Sh publication updates the list in Craven (1999). Silozi L Thimbukushu T Status: The following icons indicate the present known status of the grass in Namibia: Life form: This indicates if the plant is generally an annual or G Endemic—occurs only within the political boundaries of perennial and in certain cases whether the plant occurs in water Namibia. as a hydrophyte. = Near endemic—occurs in Namibia and immediate sur- rounding areas in neighbouring countries. Abundance: The frequency of occurrence according to her- N Endemic to southern Africa—occurs more widely within barium holdings of specimens at WIND and PRE is indicated political boundaries of southern Africa. here. 7 Naturalised—not indigenous, but growing naturally. < Cultivated. Habitat: The general environment in which the grasses are % Escapee—a grass that is not indigenous to Namibia and found, is indicated here according to Namibian records. This grows naturally under favourable conditions, but there are should be considered preliminary information because much usually only a few isolated individuals. -
ISTA List of Stabilized Plant Names 7Th Edition
ISTA List of Stabilized Plant Names th 7 Edition ISTA Nomenclature Committee Chair: Dr. M. Schori Published by All rights reserved. No part of this publication may be The Internation Seed Testing Association (ISTA) reproduced, stored in any retrieval system or transmitted Zürichstr. 50, CH-8303 Bassersdorf, Switzerland in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, without prior ©2020 International Seed Testing Association (ISTA) permission in writing from ISTA. ISBN 978-3-906549-77-4 ISTA List of Stabilized Plant Names 1st Edition 1966 ISTA Nomenclature Committee Chair: Prof P. A. Linehan 2nd Edition 1983 ISTA Nomenclature Committee Chair: Dr. H. Pirson 3rd Edition 1988 ISTA Nomenclature Committee Chair: Dr. W. A. Brandenburg 4th Edition 2001 ISTA Nomenclature Committee Chair: Dr. J. H. Wiersema 5th Edition 2007 ISTA Nomenclature Committee Chair: Dr. J. H. Wiersema 6th Edition 2013 ISTA Nomenclature Committee Chair: Dr. J. H. Wiersema 7th Edition 2019 ISTA Nomenclature Committee Chair: Dr. M. Schori 2 7th Edition ISTA List of Stabilized Plant Names Content Preface .......................................................................................................................................................... 4 Acknowledgements ....................................................................................................................................... 6 Symbols and Abbreviations .......................................................................................................................... -
Parque Nacional De Banhine, Mocambique
Parque Nacional de Banhine, Moçambique Wildlife survey December 2007 Technical report commissioned by ACTF - MITUR Projecto Áreas de Conservação Transfronteira e Desenvolvimento do Turismo (ACTFDT) Ministério do Turismo REPÚBLICA DE MOÇAMBIQUE Enquiries: Dr Bartolomeu Soto Service provider International Conservation Services Agricultural Research Council - Range & Forage Unit Sunrise Aviation Dr M Stalmans PO Box 19139 NELSPRUIT 1200 South Africa [email protected] Contract number: UC-ACTF/029/07 - Grant number: TF 056038MOZ Contents Page Executive summary 3 1. Background 5 2. Methodology 5 2.1. General approach 5 2.2. Survey technique 7 2.3. Data analysis 9 3. Results 11 3.1. Area covered 11 3.2. Species observed 13 3.3. Numbers observed 15 3.4. Population structure 16 3.5. Replicate observations 16 4. Discussion of numbers and distribution 18 4.4. Landscape and area preferences 18 4.2. Comparison between 2004 and 2007 25 4.3. Current densities in the context of carrying capacity 27 5. Illegal hunting and wood cutting 27 6. Park rehabilitation 29 7. Conclusion 29 8. References 30 Appendix A: Technical specifications for the study (as defined by MITUR). 31 Appendix B: Scientific, English and Portugese names of wildlife observed 32 during the game survey of Parque Nacional de Banhine during October- November 2007. Parque Nacional de Banhine - Wildlife survey 2007 2 Executive summary A wildlife survey was undertaken during October-November 2007 of the Parque Nacional de Banhine as a follow-up from the survey undertaken during 2004. Balancing the requirements for objectivity, repeatability and affordability, a partial survey (sample count) was applied with a helicopter using the same survey blocks used in 2004. -
(Gramineae) in Malesia
BLUMEA 21 (1973) I—Bo1 —80 A revision of DigitariaHaller (Gramineae) in Malesia. Notes on Malesian grasses VI J.F. Veldkamp Rijksherbarium, Leiden '...a material stronger than armor: Crabgrass' Parker & The is (B. J. Hart, King a Fink, 1964) Contents Summary 1 General introduction 2 Part 1. General observations Nomenclature A. 4 B. Taxonomic position 6 C. Morphology 7 D. Infra-generic taxonomy 12 E. Infra-specific taxonomy and genetics 17 F. Cultivated species 19 G. References 19 Part II. Descriptive part of data A. Presentation 22 B. Guide to the key and descriptions 22 c. Key 23 D. Descriptions 27 E. dubiae vel excludendae Species 71 Index 74 Summary Inthis revision is of the Malesian paper a given species ofthe Crabgrasses, or Digitaria Haller ( Gramineae). The research was done at the Rijksherbarium, Leyden, while many other Herbaria were shortly visited; some field work was done in Indonesia, Australia, and Papua-New Guinea. the in The foundation for study this large and cosmopolitan genus must be Henrard’s monumental work of the which therefore cited ‘Monograph genus Digitaria’ (1950), is extensively and discussed. in in the the Henrard based his division sections, 32 subgenus Digitaria, with anemphasis on amount of and the various of but such subdivision spikelets per grouplet types hairs, a appears difficult to maintain. As in only part of the species of Digitaria occurs Malesia, not representing all sections, a new infra-generic can be As far as the sections Malesia system not given. present in are concerned, it appeared that the Biformes, Horizontales, and Parviglumaehad to be united with the section Digitaria, the Remotae and Subeffusae had to into be merged one, the Remotae, while the Atrofuscae had to be included, at least partly, in the Clavipilae, here renamed is Filiformes. -
Appraisal of the Potential for Rhino Conservation in Mozambique
APPRAISAL OF THE POTENTIAL FOR RHINO CONSERVATION IN MOZAMBIQUE Kevin M. Dunham Detailed Evaluation of Feasibility and Reintroduction Options for Rhinos in Limpopo National Park Scoping Evaluation of Feasibility and Reintroduction Options for Rhinos in Zinave National Park and Gile Game Reserve Preliminary Guidelines for the Development of a Rhino Conservation Policy for Mozambique Semester 9 Task 1.2-8.1 April 2004 SADC Regional Programme for Rhino Conservation Harare Appraisal of the Potential for Rhino Conservation in Mozambique Summary • Prior to the European exploration of Africa, the white rhino was found in Mozambique south of the Zambezi River and the black rhino was found throughout the country. • During 1870, both the white rhino and the black rhino were reported west of the Limpopo River, between its confluences with the Elefantes and Nuanetsi Rivers. But by the late 1950s, excessive hunting had caused the extinction of the white rhino in Mozambique and the black rhino was extinct south of the Save River. During the 1960s and 1970s, a few rhinos entered Coutada 16 from South Africa and Zimbabwe. • Coutada 16 was proclaimed Limpopo National Park (NP) during November 2001. It is part of the Great Limpopo Transfrontier Park, which includes Kruger NP in South Africa and Gonarezhou NP in Zimbabwe. The development of Limpopo NP is being funded by an initial grant of 6 million euros secured by the Peace Parks Foundation (PPF) from the German Development Bank. • During 2002 and 2003, approximately 2000 animals of a variety of species, including two white rhinos, were released into a fenced, 350 km2 sanctuary in the south-west of Limpopo NP. -
Biodiversity Sector Plan for the Zululand District Municipality, Kwazulu-Natal
EZEMVELO KZN WILDLIFE Biodiversity Sector Plan for the Zululand District Municipality, KwaZulu-Natal Technical Report February 2010 The Project Team Thorn-Ex cc (Environmental Services) PO Box 800, Hilton, 3245 Pietermaritzbur South Africa Tel: (033) 3431814 Fax: (033) 3431819 Mobile: 084 5014665 [email protected] Marita Thornhill (Project Management & Coordination) AFZELIA Environmental Consultants cc KwaZulu-Natal Western Cape PO Box 95 PO Box 3397 Hilton 3245 Cape Town 8000 Tel: 033 3432931/32 Tel: 072 3900686 Fax: 033 3432033 or Fax: 086 5132112 086 5170900 Mobile: 084 6756052 [email protected] [email protected] Wolfgang Kanz (Biodiversity Specialist Coordinator) John Richardson (GIS) Monde Nembula (Social Facilitation) Tim O’Connor & Associates P.O.Box 379 Hilton 3245 South Africa Tel/ Fax: 27-(0)33-3433491 [email protected] Tim O’Connor (Biodiversity Expert Advice) Zululand Biodiversity Sector Plan (February 2010) 1 Executive Summary The Biodiversity Act introduced several legislated planning tools to assist with the management and conservation of South Africa’s biological diversity. These include the declaration of “Bioregions” and the publication of “Bioregional Plans”. Bioregional plans are usually an output of a systematic spatial conservation assessment of a region. They identify areas of conservation priority, and constraints and opportunities for implementation of the plan. The precursor to a Bioregional Plan is a Biodiversity Sector Plan (BSP), which is the official reference for biodiversity priorities to be taken into account in land-use planning and decision-making by all sectors within the District Municipality. The overall aim is to avoid the loss of natural habitat in Critical Biodiversity Areas (CBAs) and prevent the degradation of Ecological Support Areas (ESAs), while encouraging sustainable development in Other Natural Areas. -
Park Brochure
BACKGROUND AND HISTORY found in the area the recent improved conservaon populaons. Plans remain to reintroduce zebra, and protecon efforts will lead to natural and wildebeest, giraffe and other historical species to Banhine Naonal Park (BNP) covers 725.042,66 introductory increases in wildlife numbers. the landscape in coming years. hectares and forms part of the Great Limpopo Although the birdlife of Mozambique in general is Transfroner Conservaon Area. BNP is an poorly known, 306 species have been recorded in important tourism and ecological link between The history of BNP reflects the migraon of people BNP, including a number of rare and endangered Limpopo and Zinave Naonal Park in Mozambique over the centuries, with an early presence of species such as the waled crane. and Gonarezhou Naonal Park in Zimbabwe. Bushmen and later of Bantu speaking people and Arabic traders. During the Portuguese colonial period the area was known for its big game and TOURISM The Park was historically rich in large animals, hunng which tended to peak in the dry season including elephants and other plain ungulates such when water was scarce and was oen referred to as At the Park head quarters is a Tourist camp as zebra, wildebeest and eland. However, from the the “Serenge of Mozambique” because of the consisng of early 1960's the capture of specimens such as large numbers of zebra, wildebeest and eland that Ÿ 6 x 2 bed safari tents on plaorms with en suite Sable and Roan for internaonal zoos, the occupied its wide-open grasslands. abluons and solar lighng and plug point commercial hunng and more recently Ÿ subsistence hunng and poor management Camping area with communal abluons capacies have reduced wildlife numbers and WILDLIFE Communal kitchen structure (guest must be distribuon. -
Floodplain Vegetation Responses to Flood Regime in the Seasonal Okavango Delta, Botswana
FLOODPLAIN VEGETATION RESPONSES TO FLOOD REGIME IN THE SEASONAL OKAVANGO DELTA, BOTSWANA By MICHAEL MURRAY-HUDSON A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 2009 1 ©2009 Michael Murray-Hudson 2 To the late Pete Smith, who planted the seed, and to Frances, who helped it grow. 3 ACKNOWLEDGEMENTS The research on which this dissertation is based was funded and supported by many and various agencies: The University of Botswana, University of Florida (Adaptive Management: Water, Wetlands and Watersheds program funded by the National Science Foundation), and the Biokavango project (Global Environment Facility). The University of Botswana also provided funding for the costs of studying and living abroad. Their support is gratefully acknowledged. In addition the support of all of the staff at the Harry Oppenheimer Okavango Research Centre was instrumental in facilitating both the field research and the remote sensing components of this work. In particular, Piotr Wolski (who can make computers work for him), Cornelis Vanderpost for help with imagery, and Wilfred Kaneguba, Moagisi Diare, Florian Bendsen and Aulter Karumendu for unflagging enthusiasm, willingness to do transects chest deep in crocodile- infested waters, and very fine goat stews in very remote places. Dr Jonathan Timberlake and the staff at the Royal Botanical Gardens in Kew, England, provided invaluable help with identifying stubborn species. Special thanks are due to Dr Mark Brown, my supervisor, for allowing me great flexibility in achieving my goals, and for the field trips in support of the Integrative Graduate Education and Research Traineeship Program (IGERT) program. -
Supplementary Tables and Figures the Legacy of C4 Evolution
Supplementary method Leaf hydraulic conductance Leaf hydraulic conductance (Kleaf) was measured using the evaporative flux method (Sack and Scoffoni, 2012), with some adjustments to maintain stability of the evaporative environment to which the leaf was exposed. the evening before measurements, potted plants were brought to the laboratory, well-watered and, then covered by black plastic bags filled with wet paper towels to rehydrate overnight. The most-recent fully expanded leaves from each plant were used for Kleaf measurements. For the leaf gasket, a 1 cm diameter, ~ 1 cm long solid silicone rubber cylinder was cut nearly in two, leaving a hinge on one end. The cylinder was placed around the leaf blade near the ligule and glued shut with superglue (gasket method from Troy Ocheltree, personal communication): The leaf was cut from the plant with a razor blade while submerged in a 15 mmol L-1 KCl solution; the rubber gasket was then attached to tubing filled with the same KCl solution. The other end of the tubing was inside a graduated cylinder that sat on a digital balance (Mettler-Toledo). The leaf was then placed inside a custom, environmentally controlled cuvette that allowed for the measurement of entire grass blades. The cylindrical glass cuvette is 50 cm long with a 6 cm diameter. It is surrounded by a second glass cylinder that is sealed off with the exception of two nozzles that allow for the circulation of temperature-controlled water. This water jacket controls cuvette temperature. Within the cuvette, the leaf rests on a 48 cm long, removable threaded-rod insert that has attached to it: 11 air-stirring fans, a leaf thermocouple, a shielded temperature/relative humidity sensor (Sensirion SHT75), and tubing for incoming/outgoing air supply. -
The Terrestrial Mammals of Mozambique: Integrating Dispersed Biodiversity Data
Bothalia - African Biodiversity & Conservation ISSN: (Online) 2311-9284, (Print) 0006-8241 Page 1 of 23 Original Research The terrestrial mammals of Mozambique: Integrating dispersed biodiversity data Authors: Background: The most comprehensive synopsis of the mammal fauna of Mozambique was 1,2,3 Isabel Q. Neves published in 1976, listing 190 species of terrestrial mammals. Up-to-date knowledge of the Maria da Luz Mathias2,3 Cristiane Bastos-Silveira1 country’s biodiversity is crucial to establish the baseline information needed for conservation and management actions. Affiliations: 1Museu Nacional de História Objectives: The aim of this article was to present a list of terrestrial mammal species reported Natural e da Ciência, from Mozambique, based on primary occurrence data. Universidade de Lisboa, Portugal Method: We integrated existing knowledge, from dispersed sources of biodiversity data: the Global Biodiversity Information Facility portal, natural history collections, survey reports and 2Departamento de Biologia literature. Data were updated and manually curated. However, none of the specimens upon Animal, Faculdade de which occurrences are based was directly observed. To partly overcome this impediment, we Ciências da Universidade de Lisboa, Portugal developed a species selection process for specimen data. This process produced the country’s species checklist and an additional list of species with questionable occurrence in the country. 3Centre for Environmental and Marine Studies, Results: From the digital and non-digital sources, we compiled more than 17 000 records. The Faculdade de Ciências da data integrated resulted in a total of 217 mammal species (representing 14 orders, 39 families Universidade de Lisboa, and 133 genera) with supported occurrence in Mozambique and 23 species with questionable Portugal reported occurrence in the country. -
GRAPHIE by Cornelia D. Niles with INTRODUCTION and BOTANICAL
A BIBLIOGRAPHIC STUDY OF BEAUVOIS' AGROSTO- • GRAPHIE By Cornelia D. Niles WITH INTRODUCTION AND BOTANICAL NOTES By Aones Chase nrntODTJCTiON The Essai d?une Nouvelle Agrostographie ; ou Nouveaux Genres des Graminees; avec figures representant les Oaracteres de tous les Genres, by A. M. F. J. Palisot de Beauvois, published in 1812, is, from the standpoint of the nomenclature of grasses, a very important work, its importance being due principally to its innumerable errors, less so because of its scientific value. In this small volume 69 new genera are proposed and some 640 new species, new binomials, and new names are published. Of the 69 genera proposed 31 are to-day recognized as valid, and of the 640 names about 61 are commonly accepted. There is probably not a grass flora of any considerable region anywhere in the world that does not contain some of Beauvois' names. Many of the new names are made in such haphazard fashion that they are incorrectly listed in the Index Kewensis. There are, besides, a number of misspelled names that have found their way into botanical literature. The inaccuracies are so numerous and the cita- tions so incomplete that only a trained bibliographer* could solve the many puzzles presented. Cornelia D. Niles in connection with her work on the bibliography of grasses, maintained in the form of a card catalogue in the Grass Herbarium, worked out the basis in literature of each of these new names. The botanical problems involved, the interpretation of descriptions and figures, were worked out by Agnes Chase, who is also respon- sible for the translation and summaries from the Advertisement, Introduction, and Principles.