Supplementary Material
Supplementary Figure S1: Validation of amplicons using fluorescence in situ hybridisation with probes for 19q13.2 (A, B), 20q13.13 (C, D) and 20q13.31-q13.32
(E, F). Ovarian clear cell carcinomas harbouring amplification of 19q13.2, 20q13.13 and 20q13.31-q13.32 (A, C and E, respectively) and lacking amplification of these genomic regions (B, D and F, respectively). Images were captured with 3 channels
(DAPI, FITC and Cy3) by using a TCS SP2 confocal microscope (Leica Milton
Keynes, UK) (630X Immersion Oil).
Supplementary Table S1: Summary of recurrent regions (at least 5/50 tumours, i.e.
≥10%) of gains (Log2 ratio>0.12) and losses (Log2 ratio<-0.12) and recurrent regions
(at least 2/50 tumours, i.e. ≥4%) of high-level gain/ amplification (Log2 ratios>0.4) and known copy number variations (CNV) for all 50 ovarian clear cell carcinomas.
NB: This Supplementary Table has been saved in a high resolution PDF format; eighteen A0 pages.
Supplementary Table S2: List of genes within regions of recurrent (at least 2/50 tumours) amplification (Log2 ratios>0.4) in 50 ovarian clear cell carcinomas.
NB: This Supplementary Table has been saved in a high resolution PDF format; fourteen A0 pages.
Supplementary Table S3: Table summarising of the correlations between HER2 amplification as defined by chromogenic in situ hybridisation and HER2 overexpression as defined by immunohistochemistry in ovarian clear cell carcinomas identified as harbouring HER2 gene amplification based on microarray-based comparative genomic hybridisation analysis; the chromogenic in situ hybridisation validation of the presence of 17q21-21.32 amplification as defined by microarray- based comparative genomic hybridisation analysis of ovarian clear cell carcinomas; and the fluorescence in situ hybridisation validation of the presence of 19q13.2,
20q13.13 and 20q13.31-q13.32 amplification as defined by microarray-based comparative genomic hybridisation analysis in ovarian clear cell carcinomas.
NB: This Supplementary Table has been saved in a high resolution PDF format; one
A4 page.
Supplementary Table S4: List of copy number aberrations significantly different in frequency between Cluster-1 and Cluster 2 ovarian clear cell carcinomas using Multi-
Fisher’s exact test corrected for false discovery rate (adjusted p<0.05).
NB: This Supplementary Table has been saved in a high resolution PDF format; three A0 pages. Supplementary Table 1 Page 1
Supplementary Table 1: Summary of recurrent regions (at least 5/50 tumours, i.e. 10%) of gains (Log2 ratio>0.12) and losses (Log2 ratio<-0.12) and recurrent regions (at least 2/50 tumours, i.e. 4%) of high-level gain/ amplification (Log2 ratios>0.4) and known copy number variations (CNV) for all 50 ovarian clear cell carcinomas. List of regions showing gains in 5 or more cases
Chromosome Cytoband Start (bp) End (bp) Maximum Frequency Genes miRNAs aCGH copy number polymorphisms (CNVs) All copy number polymorphisms (CNVs)
1 p36.33-p33 633918 49868708 58% SAMD11, NOC2L, KLHL17, PLEKHN1, C1orf170, HES4, ISG15, AGRN, C1orf159, TTLL10, TNFRSF18, TNFRSF4, hsa-mir-200b, hsa-mir-200a, hsa-mir-429, hsa-mir-551a, hsa-mir-34a, hsa-mir-1290, hsa- V_0001_LC0020_Iafrate et al. (2004), V_0002_LC0028_Iafrate et al. (2004), V_0003_LC0126_Iafrate et al. (2004), V_0001, V_0002, V_0003, V_0004, V_0005, SDF4, B3GALT6, FAM132A, UBE2J2, SCNN1D, ACAP3, PUSL1, CPSF3L, GLTPD1, TAS1R3, DVL1, MXRA8, mir-1256, hsa-mir-1976, hsa-mir-552, hsa-mir-30e, hsa-mir-30c-1 V_0004_LC0152_Iafrate et al. (2004), V_0005_LC0177_Iafrate et al. (2004), V_0006_LC0305_Iafrate et al. (2004), V_0006, V_0256, V_0257, V_0378, V_0379, AURKAIP1, CCNL2, MRPL20, VWA1, ATAD3C, ATAD3B, ATAD3A, C1orf70, SSU72, MIB2, MMP23B, CDC2L2, V_0676_LC0150_Sharp et al. (2005), V_0677_LC0152_Sharp et al. (2005), V_0679_LC0177_Sharp et al. (2005), V_0380, V_0381, V_0382, V_0676, V_0677, SLC35E2, NADK, GNB1, CALML6, TMEM52, C1orf222, KIAA1751, GABRD, PRKCZ, C1orf86, SKI, MORN1, RER1, V_0680_LC0248_Sharp et al. (2005), V_2042_LC0028_Locke et al. (2006), V_2044_LC0177_Locke et al. (2006), V_0679, V_0680, V_0992, V_0993, V_0994, PEX10, PLCH2, PANK4, HES5, TNFRSF14, C1orf93, MMEL1, TTC34, ACTRT2, PRDM16, ARHGEF16, MEGF6, V_2045_LC0219_Locke et al. (2006), V_2046_LC0230_Locke et al. (2006), V_2047_LC0248_Locke et al. (2006), V_0995, V_0996, V_0997, V_0998, V_0999, TPRG1L, WDR8, TP73, CCDC27, LRRC47, KIAA0562, DFFB, C1orf174, AJAP1, NPHP4, KCNAB2, CHD5, RPL22, V_4190_LC0001_Wong et al. (2007), V_4191_LC0001_Wong et al. (2007), V_4192_LC0040_Wong et al. (2007), V_1314, V_1315, V_1316, V_1535, V_1536, RNF207, ICMT, HES3, GPR153, ACOT7, HES2, ESPN, TNFRSF25, PLEKHG5, NOL9, TAS1R1, ZBTB48, KLHL21, V_4193_LC0040_Wong et al. (2007), V_4194_LC0040_Wong et al. (2007), V_4195_LC0040_Wong et al. (2007), V_1537, V_1538, V_1539, V_1540, V_1541, PHF13, THAP3, DNAJC11, CAMTA1, VAMP3, PER3, UTS2, TNFRSF9, PARK7, ERRFI1, SLC45A1, RERE, ENO1, V_4196_LC0040_Wong et al. (2007), V_4197_LC0040_Wong et al. (2007), V_4198_LC0097_Wong et al. (2007), V_2042, V_2044, V_2045, V_2046, V_2047, CA6, SLC2A7, SLC2A5, GPR157, H6PD, SPSB1, SLC25A33, TMEM201, PIK3CD, C1orf200, CLSTN1, CTNNBIP1, V_4199_LC0100_Wong et al. (2007), V_4200_LC0104_Wong et al. (2007), V_4201_LC0106_Wong et al. (2007), V_2294, V_2295, V_2296, V_2297, V_2298, LZIC, NMNAT1, RBP7, UBE4B, KIF1B, PGD, APITD1, DFFA, PEX14, CASZ1, C1orf127, TARDBP, MASP2, SRM, V_4202_LC0106_Wong et al. (2007), V_4203_LC0113_Wong et al. (2007), V_4204_LC0118_Wong et al. (2007), V_2299, V_2300, V_2301, V_2302, V_2303, EXOSC10, FRAP1, ANGPTL7, UBIAD1, PTCHD2, FBXO2, FBXO44, FBXO6, MAD2L2, C1orf187, AGTRAP, V_4205_LC0141_Wong et al. (2007), V_4206_LC0165_W V_2304, V_2305, V_3274, V_3275, V_3276, C1orf167, MTHFR, CLCN6, NPPA, NPPB, KIAA2013, PLO V_3277, V_3278, V_3279, V_3280, V_3281, V_3282, V_3283, V_3284, V_3285, V_3286, V_3287, V_3288, V_3289, V_4190, V_4191, V_4192, V_4193, V_4194, V_4195, V_4196, V_4197, V_4198, V_4199, V_4200, V_4201, V_4202, V_4203, V_4204, V_4205, V_4206, V_4207, V_4208, V_4209, V_4210, V_4211, V_4212, V_4213, V_4214, V_4215, V_4216, V_4217, V_4218, V_4219, V_4220, V_4221, V_4222, V_4403, V_5197, V_5198, V_5200, V_5452, V_5453, V_5454, V_5455, V_5456, V_5457, V_5458, V_5459, V_5460, V_5461, V_5462, V_5463, V_5464, V_5465, V_5466, V_5467, V_5468, V_5469, V_5470, V_5471, V_5472, V_5473, V_5474, V_5475, V_5476, V_5477, V_5478, V_54
1 p33-p32.3 50412265 53048446 14% AGBL4, ELAVL4, DMRTA2, FAF1, CDKN2C, C1orf185, RNF11, TTC39A, EPS15, OSBPL9, NRD1, RAB3B, V_4223_LC0373_Wong et al. (2007), V_4224_LC0373_Wong et al. (2007), V_4225_LC0378_Wong et al. (2007) V_3290, V_4223, V_4224, V_4225, V_5493 TXNDC12, KTI12, BTF3L4, ZFYVE9, CC2D1B, ORC1L, PRPF38A, ZCCHC11
1 p32.3 53700137 54200555 14% MAGOH, LRP8, DMRTB1, GLIS1 V_3291 1 p13.1-p12 116841776 118776756 14% ATP1A1, C1orf203, CD58, IGSF3, C1orf137, CD2, PTGFRN, IGSF2, TTF2, TRIM45, VTCN1, MAN1A2, FAM46C, hsa-mir-320b-1, hsa-mir-942 V_4243_LC0729_Wong et al. (2007) V_3307, V_4243, V_6777 GDAP2, WDR3, SPAG17
1 p12 119335329 119920452 12% TBX15, WARS2, HAO2 V_2323, V_3308, V_9370
1 p12 119875343 120650514 12% HAO2, HSD3B2, HSD3B1, ZNF697, PHGDH, HMGCS2, REG4, ADAM30, NOTCH2 V_4244_LC0743_Wong et al. (2007), V_4245_LC0743_Wong et al. (2007), V_4246_LC0743_Wong et al. (2007) V_1015, V_1552, V_2323, V_3308, V_3309, V_4244, V_4245, V_4246, V_8219, V_9370, V_22949, V_23235
1 q21.1-q31.1 143510356 188484990 48% PPIAL4G, FAM72D, SRGAP2P2, PPIAL4B, NBPF9, PDE4DIP, SEC22B, NOTCH2NL, HFE2, TXNIP, POLR3GL, hsa-mir-554, hsa-mir-190b, hsa-mir-92b, hsa-mir-555, hsa-mir-9-1, hsa-mir-765, hsa-mir- V_0014_LC0941_Iafrate et al. (2004), V_0015_LC0954_Iafrate et al. (2004), V_0685_LC0752_Sharp et al. (2005), V_0014, V_0015, V_0260, V_0261, V_0387, ANKRD34A, LIX1L, RBM8A, GNRHR2, PEX11B, ITGA10, ANKRD35, PIAS3, NUDT17, POLR3C, RNF115, CD160, 556, hsa-mir-921, hsa-mir-1255b-2, hsa-mir-557, hsa-mir-1295, hsa-mir-214, hsa-mir- V_2050_LC0752_Locke et al. (2006), V_2051_LC0752_Locke et al. (2006), V_2052_LC0752_Locke et al. (2006), V_0388, V_0389, V_0390, V_0391, V_0392, PDZK1, GPR89A, GPR89C, NBPF8, NBPF8, NBPF12, PRKAB2, FMO5, CHD1L, BCL9, ACP6, GJA5, GJA8, 199a-2, hsa-mir-488 V_4249_LC0752_Wong et al. (2007), V_4250_LC0752_Wong et al. (2007), V_4251_LC0752_Wong et al. (2007), V_0393, V_0394, V_0395, V_0396, V_0685, GPR89B, NBPF11, FAM108A2, PPIAL4A, NBPF14, NBPF10, NBPF16, FCGR1C, HIST2H3PS2, FAM72C, V_4252_LC0752_Wong et al. (2007), V_4253_LC0752_Wong et al. (2007), V_4254_LC0752_Wong et al. (2007), V_1016, V_1017, V_1018, V_1019, V_1326, PPIAL4C, FAM91A2, FCGR1A, HIST2H2BF, HIST2H3D, HIST2H4A, HIST2H3C, HIST2H2AA3, HIST2H2AA4, V_4255_LC0752_Wong et al. (2007), V_4256_LC0752_Wong et al. (2007), V_4257_LC0831_Wong et al. (2007), V_1327, V_1328, V_1329, V_1330, V_1331, HIST2H3A, HIST2H4B, HIST2H2BE, BOLA1, HIST2H2AC, HIST2H2AB, SV2A, SF3B4, MTMR11, OTUD7B, V_4258_LC0863_Wong et al. (2007), V_4259_LC0863_Wong et al. (2007), V_4260_LC0878_Wong et al. (2007), V_1332, V_1333, V_1334, V_1335, V_1336, VPS45, PLEKHO1, ANP32E, CA14, APH1A, C1orf54, C1orf51, MRPS21, PRPF3, RPRD2, TARS2, ECM1, V_4261_LC0907_Wong et al. (2007), V_4262_LC0938_Wong et al. (2007), V_4263_LC0946_Wong et al. (2007), V_1337, V_1338, V_1339, V_1340, V_1341, ADAMTSL4, C1orf138, MCL1, ENSA, GOLPH3L, HORMAD1, CTSS, CTSK, ARNT, SETDB1, LASS2, ANXA9, V_4264_LC0975_Wong et al. (2007), V_4265_LC0992_Wong et al. (2007) V_1342, V_1343, V_1344, V_1553, V_1554, FAM63A, PRUNE, BNIPL, C1orf56, CDC42SE1, MLLT11, GABPB2, SEMA6C, TNFAIP8L2, LYSMD1, SCNM1, V_1555, V_1556, V_1557, V_1558, V_1559, TMOD4, VPS72, PIP5K1A, PSMD4, ZNF687, PI4KB, RFX5, SELENBP1, PSMB4, POGZ, CGN, TUFT1, SNX27, V_1560, V_1561, V_2050, V_2051, V_2052, TNRC4, MRPL9, OAZ3, TDRKH, LINGO4, RORC, THEM5, THEM4, S100A10, S100A11, TCHHL1, TCHH, RPTN, V_2324, V_2325, V_2326, V_2327, V_2328, HRNR, FLG, FLG2, CRNN, LCE5A, CRCT1, LCE3E, LCE3D, LCE3B, LCE3A, LCE2D, LCE2C, LCE2B, LCE2A, V_2329, V_2330, V_2331, V_2332, V_2333, LCE4A, C1orf68, KPRP, LCE1E, LCE1D, LCE1C, LCE1B, V_2334, V_2335, V_2336, V_2337, V_2338, V_3310, V_3311, V_3312, V_3313, V_3314, V_3315, V_3316, V_3317, V_3318, V_3319, V_3320, V_3321, V_3322, V_4249, V_4250, V_4251, V_4252, V_4253, V_4254, V_4255, V_4256, V_4257, V_4258, V_4259, V_4260, V_4261, V_4262, V_4263, V_4264, V_4265, V_5199, V_5514, V_5515, V_5516, V_5517, V_5518, V_5519, V_5520, V_5521, V_5522, V_5523, V_5524, V_5525, V_5526, V_5527, V_5528, V_5529, V_5530, V_5531, V_5532, V_5533, V_5534, V_5535, V_5536, V_5537, V_5538, V_5539, V_5540, V_6780, V_6781, V_6782, V_6783, V_6784, V_6785, V_6786, V_6787, V_6788, V_67
1 q32.1-q32.3 199435643 213214682 32% NR5A2, C1orf98, ZNF281, KIF14, DDX59, CAMSAP1L1, GPR25, C1orf106, KIF21B, CACNA1S, TMEM9, IGFN1, hsa-mir-1231, hsa-mir-135b, hsa-mir-29c, hsa-mir-29b-2, hsa-mir-205 V_2091_LC1120_Locke et al. (2006), V_4267_LC1097_Wong et al. (2007), V_4268_LC1117_Wong et al. (2007), V_0398, V_1562, V_2091, V_2345, V_2346, PKP1, TNNT2, LAD1, TNNI1, PHLDA3, CSRP1, NAV1, IPO9, SHISA4, LMOD1, TIMM17A, RNPEP, ELF3, V_4269_LC1125_Wong et al. (2007) V_2347, V_3327, V_3328, V_3329, V_4267, GPR37L1, ARL8A, PTPN7, LGR6, UBE2T, PPP1R12B, SYT2, KDM5B, RABIF, KLHL12, ADIPOR1, CYB5R1, V_4268, V_4269, V_5543, V_5544, V_5545, TMEM183A, PPFIA4, MYOG, ADORA1, MYBPH, CHI3L1, CHIT1, BTG2, FMOD, PRELP, OPTC, ATP2B4, LAX1, V_5546, V_5547, V_5548, V_5549, V_5550, ZC3H11A, SNRPE, C1orf157, SOX13, ETNK2, REN, KISS1, GOLT1A, PLEKHA6, PPP1R15B, PIK3C2B, MDM4, V_5551, V_6806, V_6807, V_6808, V_7865, LRRN2, NFASC, CNTN2, TMEM81, RBBP5, DSTYK, TMCC2, NUAK2, KLHDC8A, LEMD1, PCTK3, MFSD4, ELK4, V_7947, V_8345, V_8346, V_9386, V_9387, SLC45A3, NUCKS1, RAB7L1, SLC41A1, PM20D1, SLC26A9, FAM72A, AVPR1B, C1orf186, CTSE, SRGAP2, V_9388, V_9912, V_9913, V_22807, IKBKE, C1orf147, RASSF5, LGTN, DYRK3, MAPKAPK2, IL10, IL19, IL20, IL24, FAIM3, PIGR, FCAMR, C1orf116, V_22966, V_23014, V_23036, V_23348, YOD1, PFKFB2, C4BPB, C4BPA, CD55, CR2, CR1, CR1L, CD46, C1orf132, CD34, PLXNA2, CAMK1G, LAMB3, V_23349, V_23350, V_23351 G0S2, HSD11B1, TRAF3IP3, C1orf74, IRF6, C1orf107, SYT14, C1orf133, SERTAD4, HHAT, KCNH1, RCOR3, TRAF5, C1orf97, RD3, SLC30A1, NEK2, LPGAT1, INTS7, DTL, PPP2R5A, TMEM206, NENF, ATF3, FAM71A, BATF3, NSL1, TATDN3, C1orf227, FLVCR1, VASH2, ANG
1 q32.3-q41 213379796 218387703 16% RPS6KC1, PROX1, SMYD2, PTPN14, CENPF, KCNK2, KCTD3, USH2A, ESRRG, GPATCH2, SPATA17 V_4270_LC1176_Wong et al. (2007) V_0399, V_4270, V_6809, V_7971, V_7992, V_8934, V_23170, V_23352, V_23353
1 q41-q44 220341262 248876423 30% RAB3GAP2, MARK1, C1orf115, MOSC2, MOSC1, HLX, DUSP10, HHIPL2, TAF1A, MIA3, AIDA, C1orf58, hsa-mir-320b-2, hsa-mir-1182, hsa-mir-1537 V_0016_LC1285_Iafrate et al. (2004), V_0017_LC1401_Iafrate et al. (2004), V_2056_LC1401_Locke et al. (2006), V_0016, V_0017, V_0262, V_0263, V_0982, FAM177B, DISP1, TLR5, SUSD4, C1orf65, CAPN8, CAPN2, TP53BP2, FBXO28, DEGS1, NVL, CNIH4, WDR26, V_4271_LC1296_Wong et al. (2007), V_4272_LC1302_Wong et al. (2007) V_1024, V_1025, V_1346, V_1347, V_1563, CNIH3, DNAH14, LBR, C1orf197, ENAH, SRP9, EPHX1, TMEM63A, LEFTY1, LEFTY2, C1orf55, H3F3A, ACBD3, V_1564, V_2056, V_2348, V_2349, V_2350, MIXL1, LIN9, PARP1, C1orf95, ITPKB, PSEN2, CABC1, CDC42BPA, ZNF678, SNAP47, JMJD4, WNT9A, WNT3A, V_2351, V_2352, V_2353, V_2354, V_2355, ARF1, C1orf35, MRPL55, GUK1, GJC2, C1orf148, C1orf69, C1orf145, OBSCN, TRIM11, TRIM17, HIST3H3, V_2356, V_2357, V_2358, V_2359, V_3330, HIST3H2A, HIST3H2BB, RNF187, RHOU, TMEM78, RAB4A, SPHAR, C1orf96, ACTA1, NUP133, ABCB10, TAF5L, V_3331, V_3332, V_3333, V_3334, V_3335, URB2, GALNT2, PGBD5, COG2, AGT, CAPN9, C1orf198, TTC13, ARV1, FAM89A, TRIM67, C1orf131, GNPAT, V_3336, V_3337, V_3338, V_3339, V_3340, EXOC8, C1orf124, EGLN1, TSNAX, DISC1, SIPA1L2, KIAA1383, C1orf57, PCNXL2, KCNK1, SLC35F3, C1orf31, V_4271, V_4272, V_5201, V_5554, V_5555, TARBP1, IRF2BP2, TOMM20, RBM34, ARID4B, GGPS1, TBCE, B3GALNT2, GNG4, LYST, NID1, GPR137B, V_5556, V_5557, V_5558, V_5559, V_5560, ERO1LB, EDARADD, LGALS8, HEATR1, ACTN2, MTR, RYR2, ZP4, CHRM3, FMN2, GREM2, RGS7, FH, KMO, V_5561, V_5562, V_5563, V_5564, V_5565, OPN3, CHML, WDR64, EXO1, MAP1LC3C, PLD5, CEP170, SDCCAG8, AKT3, ZNF238, C1orf100, ADSS, V_5566, V_5567, V_5568, V_5569, V_5570, C1orf101, PPPDE1, FAM36A, C1orf199, HNRNPU, EFCAB V_5571, V_6811, V_6812, V_6813, V_6814, V_6815, V_6816, V_6817, V_6818, V_6819, V_6820, V_7893, V_7958, V_8080, V_8081, V_8347, V_8348, V_8349, V_8350, V_8351, V_8352, V_8353, V_8354, V_8355, V_8935, V_9389, V_9390, V_9391, V_9914, V_9915, V_9916, V_9917, V_22635, V_22676, V_22809, V_22837, V_23133, V_23161, V_23354, V_23356, V_23357, V_23359, V_23360, V_23361, V_23362
2 p25.3-p16.3 52662 51017766 36% SH3YL1, ACP1, FAM150B, TMEM18, SNTG2, TPO, PXDN, MYT1L, TSSC1, TTC15, ADI1, RNASEH1, RPS7, hsa-mir-1301, hsa-mir-558, hsa-mir-559 V_0018_LC1749_Iafrate et al. (2004), V_0689_LC1609_Sharp et al. (2005), V_4273_LC1538_Wong et al. (2007), V_0018, V_0521, V_0522, V_0523, V_0524, COLEC11, ALLC, SOX11, CMPK2, RSAD2, RNF144A, ID2, KIDINS220, MBOAT2, ASAP2, ITGB1BP1, CPSF3, V_4274_LC1541_Wong et al. (2007), V_4275_LC1625_Wong et al. (2007), V_4277_LC1732_Wong et al. (2007), V_0689, V_0983, V_0984, V_0985, V_1026, IAH1, ADAM17, YWHAQ, TAF1B, GRHL1, KLF11, CYS1, RRM2, C2orf48, HPCAL1, ODC1, NOL10, ATP6V1C2, V_4278_LC1739_Wong et al. (2007), V_4279_LC1749_Wong et al. (2007), V_4280_LC1749_Wong et al. (2007), V_1028, V_1029, V_1030, V_1031, V_1032, PDIA6, KCNF1, C2orf50, PQLC3, ROCK2, E2F6, NTSR2, LPIN1, TRIB2, FAM84A, NBAS, DDX1, MYCN, FAM49A, V_4281_LC1752_Wong et al. (2007), V_4282_LC1766_Wong et al. (2007), V_4283_LC1814_Wong et al. (2007), V_1348, V_1349, V_1565, V_1566, V_1567, RAD51AP2, VSNL1, SMC6, GEN1, MSGN1, KCNS3, NT5C1B, OSR1, TTC32, WDR35, MATN3, LAPTM4A, SDC1, V_4284_LC1832_Wong et al. (2007) V_1568, V_1569, V_1570, V_1571, V_1572, PUM2, RHOB, HS1BP3, GDF7, C2orf43, APOB, KLHL29, ATAD2B, UBXN2A, C2orf44, FKBP1B, TP53I3, PFN4, V_1573, V_1574, V_1575, V_1576, V_1577, C2orf84, ITSN2, NCOA1, C2orf79, CENPO, ADCY3, DNAJC27, EFR3B, POMC, DNMT3A, DTNB, ASXL2, KIF3C, V_2360, V_2361, V_2362, V_2363, V_2364, RAB10, FAM59B, HADHA, HADHB, GPR113, C2orf39, OTOF, C2orf70, CIB4, KCNK3, C2orf18, CENPA, DPYSL5, V_2365, V_2366, V_2367, V_2368, V_2369, MAPRE3, TMEM214, AGBL5, EMILIN1, KHK, CGREF1, ABHD1, PREB, C2orf53, TCF23, SLC5A6, C2orf28, CAD, V_2370, V_2371, V_2372, V_2373, V_2374, SLC30A3, DNAJC5G, TRIM54, UCN, MPV17, GTF3C2, EIF2B4, SNX17, ZNF513, PPM1G, NRBP1, KRTCAP3, V_2375, V_2376, V_2377, V_2378, V_2379, IFT172, FNDC4, GCKR, C2orf16, GPN1, CCDC121, SUPT7L, SLC4A1AP, MRPL33, RBKS, FOSL2, PLB1, V_2380, V_2381, V_2382, V_2383, V_3341, PPP1CB, SPDYA, TRMT61B, WDR43, FAM179A, C2orf71 V_3342, V_3343, V_3344, V_3345, V_3346, V_3347, V_3348, V_3349, V_3350, V_3351, V_3352, V_3353, V_3354, V_4273, V_4274, V_4275, V_4277, V_4278, V_4279, V_4280, V_4281, V_4282, V_4283, V_4284, V_5202, V_5203, V_5204, V_5205, V_5206, V_5207, V_5962, V_5963, V_5964, V_5965, V_5966, V_5967, V_5968, V_5969, V_5970, V_5971, V_5972, V_5973, V_5974, V_5975, V_5976, V_5977, V_5978, V_5979, V_5980, V_5981, V_5982, V_5983, V_7232, V_7233, V_7236, V_7247, V_7250, V_7255, V_7256, V_7258, V_7259, V_7260, V_7261, V_7262, V_7263, V_7264, V_7265, V_7266, V_7267, V_7268, V_7269, V_7270, V_7271, V_7272, V_7273, V_7828, V_7868, V_79
2 p16.2-p16.1 54924237 55481767 10% EML6, RTN4, C2orf63, RPS27A, MTIF2 V_1580, V_7276, V_9937
2 p16.1-p12 58562300 75105356 20% BCL11A, PAPOLG, REL, PUS10, PEX13, KIAA1841, C2orf74, AHSA2, USP34, XPO1, FAM161A, CCT4, COMMD1, hsa-mir-1285-2 V_0019_LC1897_Iafrate et al. (2004), V_4287_LC1900_Wong et al. (2007), V_4288_LC1904_Wong et al. (2007), V_0019, V_1582, V_1583, V_2386, V_2387, B3GNT1, TMEM17, EHBP1, OTX1, C2orf86, MDH1, UGP2, VPS54, PELI1, AFTPH, SERTAD2, SLC1A4, CEP68, V_5025_LC1905_Wong et al. (2007) V_2388, V_2389, V_2390, V_3361, V_3362, RAB1A, ACTR2, SPRED2, MEIS1, ETAA1, C1D, WDR92, PNO1, CNRIP1, PLEK, FBXO48, APLF, PROKR1, V_3363, V_3364, V_3365, V_3366, V_4287, ARHGAP25, BMP10, GKN2, GKN1, ANTXR1, GFPT1, NFU1, AAK1, ANXA4, GMCL1, SNRNP27, MXD1, ASPRV1, V_4288, V_5025, V_5985, V_5986, V_7278, PCBP1, C2orf42, TIA1, PCYOX1, SNRPG, FAM136A, TGFA, ADD2, FIGLA, CLEC4F, CD207, VAX2, ATP6V1B1, V_7279, V_7280, V_8008, V_8373, V_8374, TEX261, ANKRD53, NAGK, MCEE, MPHOSPH10, PAIP2B, ZNF638, DYSF, CYP26B1, EXOC6B, SPR, EMX1, V_8375, V_8949, V_9414, V_9415, V_9416, SFXN5, RAB11FIP5, NOTO, SMYD5, C2orf7, CCT7, FBXO41, ALMS1, NAT8, TPRKB, DUSP11, C2orf78, V_9417, V_9941, V_9942, V_9943, V_9944, STAMBP, ACTG2, DGUOK, TET3, BOLA3, MOBKL1B, MTHFD2, SLC4A5, DCTN1, C2orf81, WDR54, RTKN, V_22568, V_22868, V_23148 INO80B, MOGS, MRPL53, CCDC142, TTC31, LBX2, PCGF1, TLX2, DQX1, AUP1, HTRA2, LOXL3, DOK1, C2orf65, SEMA4F, HK2
2 p11.2-p11.1 89389635 90308970 10% IGKV2-19, IGKV3D-15 V_2057_LC2046_Locke et al. (2006), V_2058_LC2046_Locke et al. (2006), V_4297_LC2046_Wong et al. (2007), V_0267, V_0373, V_1353, V_1354, V_1355, V_4298_LC2046_Wong et al. (2007), V_0373_LC2046_Bejjani et al. (2005) V_1591, V_2057, V_2058, V_2400, V_4297, V_4298, V_7288, V_8199, V_8200, V_9426, V_9954, V_9955, V_9956, V_9957, V_23275 Supplementary Table 1 Page 2
2 q11.1-q11.2 95904645 97013996 10% PROM2, KCNIP3, FAHD2A, TRIM43, ADRA2B, ASTL, DUSP2, STARD7, TMEM127, CIAO1, SNRNP200, V_4300_LC2064_Wong et al. (2007) V_3378, V_4300, V_7289, V_9427 ITPRIPL1, NCAPH
2 q11.2 101525190 102516891 10% NPAS2, RPL31, TBC1D8, C2orf29, RNF149, CREG2, MAP4K4 V_5991, V_7962
2 q12.3 109647606 109982014 10% SH3RF3 V_8954 2 q13 110698745 110990361 10% LIMS3, MALL, NPHP1 V_8955, V_22955, V_23253
2 q13 113709348 113994298 12% IL1F9, IL1F6, IL1F8, IL1F5, IL1F10, IL1RN, PSD4, PAX8 V_3385, V_3386
2 q13-q14.1 114394317 116131979 12% RABL2A, SLC35F5, ACTR3, DPP10 V_1034 2 q14.1-q14.2 118632259 120894951 12% CCDC93, INSIG2, EN1, MARCO, C1QL2, STEAP3, C2orf76, DBI, TMEM37, SCTR, TMEM177, PTPN4, EPB41L5 V_4304_LC2184_Wong et al. (2007) V_4304, V_22781
2 q14.2-q14.3 121659718 123422027 12% GLI2, TFCP2L1, CLASP1, MKI67IP, TSN V_1596, V_3389
2 q14.3 124739985 126389068 10% CNTNAP5 V_0530, V_5997, V_8386, V_22826, V_23176
2 q37.1-q37.3 234451027 242371246 26% USP40, UGT1A6, HEATR7B1, HJURP, TRPM8, SPP2, ARL4C, SH3BP4, AGAP1, GBX2, ASB18, IQCA1, CXCR7, hsa-mir-149 V_0031_LC2814_Iafrate et al. (2004), V_4330_LC2814_Wong et al. (2007), V_4331_LC2814_Wong et al. (2007) V_0031, V_1047, V_1608, V_1609, V_2428, COPS8, COL6A3, MLPH, PRLH, RAB17, LRRFIP1, RBM44, RAMP1, UBE2F, SCLY, ESPNL, KLHL30, C2orf19, V_2429, V_3409, V_3410, V_4330, V_4331, FAM132B, ILKAP, HES6, PER2, TRAF3IP1, ASB1, HDAC4, NDUFA10, OR6B2, PRR21, OR6B3, MYEOV2, OTOS, V_6037, V_6038, V_7254, V_8286, V_8399, GPC1, ANKMY1, DUSP28, RNPEPL1, CAPN10, GPR35, AQP12B, AQP12A, KIF1A, AGXT, C2orf54, SNED1, V_8968, V_8969, V_9443, V_9444, V_9980, MTERFD2, PASK, PPP1R7, ANO7, HDLBP, Sep-02, FARP2 V_23605, V_23606, V_23607, V_23608
3 p25.1 14396826 14715743 10% SLC6A6, GRIP2, C3orf19 3 p22.1-p14.2 42194374 59963740 40% TRAK1, CCK, LYZL4, VIPR1, SEC22C, SS18L2, NKTR, ZBTB47, KBTBD5, HHATL, CCDC13, CCBP2, CYP8B1, hsa-mir-138-1, hsa-mir-564, hsa-mir-1226, hsa-mir-425, hsa-mir-191, hsa-mir-566, hsa- V_4333_LC3142_Wong et al. (2007), V_4334_LC3163_Wong et al. (2007), V_4335_LC3182_Wong et al. (2007), V_0551, V_0552, V_0553, V_0554, V_1366, ZNF662, C3orf39, SNRK, ANO10, ABHD5, C3orf23, ZNF445, ZNF852, ZNF167, ZNF660, ZNF197, ZNF35, ZNF502, let-7g, hsa-mir-135a-1 V_4336_LC3182_Wong et al. (2007), V_4337_LC3192_Wong et al. (2007), V_4338_LC3192_Wong et al. (2007), V_1621, V_1622, V_2449, V_2450, V_2451, ZNF501, KIAA1143, KIF15, TMEM42, TGM4, ZDHHC3, EXOSC7, CLEC3B, CDCP1, LARS2, LIMD1, SACM1L, V_4339_LC3195_Wong et al. (2007) V_2452, V_3428, V_3429, V_3430, V_4333, SLC6A20, LZTFL1, CCR9, FYCO1, CXCR6, XCR1, CCR3, CCR1, CCR2, CCR5, CCRL2, LTF, RTP3, LRRC2, V_4334, V_4335, V_4336, V_4337, V_4338, LUZPP1, TDGF1, ALS2CL, TMIE, MYL3, PTH1R, CCDC12, NBEAL2, SETD2, KIF9, KLHL18, PTPN23, SCAP, V_4339, V_6174, V_6175, V_6176, V_6177, C3orf75, CSPG5, SMARCC1, DHX30, MAP4, CDC25A, CAMP, ZNF589, NME6, SPINK8, FBXW12, PLXNB1, V_6178, V_6179, V_6180, V_6181, V_6182, CCDC51, CCDC72, ATRIP, TREX1, SHISA5, PFKFB4, UCN2, COL7A1, UQCRC1, TMEM89, SLC26A6, CELSR3, V_6183, V_6184, V_7411, V_7412, V_7413, NCKIPSD, IP6K2, PRKAR2A, SLC25A20, C3orf71, ARIH2, P4HTM, WDR6, DALRD3, NDUFAF3, IMPDH2, V_7880, V_8272, V_8421, V_8982, V_9448, QRICH1, QARS, USP19, LAMB2, CCDC71, KLHDC8B, CCDC36, C3orf62, USP4, GPX1, RHOA, TCTA, AMT, V_9993, V_9994, V_9995, V_9996, V_22510, NICN1, DAG1, BSN, APEH, MST1, RNF123, AMIGO3, GMPPB, IP6K1, CDH29, C3orf54, UBA7, TRAIP, CAMKV, V_23013, V_23209, V_23276, V_23685, MST1R, MON1A, RBM6, RBM5, SEMA3F, GNAT1, GNAI2, SEMA3B, C3orf45, IFRD2, NAT6, HYAL1, HYAL2, V_23686, V_23687, V_23688, V_29440, TUSC2, RASSF1, ZMYND10, TUSC4, CYB561D2, TMEM115, CACNA2D2, C3orf18, HEMK1, CISH, MAPKAPK3, V_29444 DOCK3, ARMET, RBM15B, VPRBP, RAD54L2, TEX264, G
3 p14.1 63937687 64391862 10% ATXN7, PSMD6, PRICKLE2 3 q13.12-q13.13 107344276 108167596 12% BBX, CD47, IFT57, HHLA2, MYH15 V_3443, V_5374
3 q13.31 114052212 114867829 10% ZBTB20 V_6203, V_23660
3 q13.32-q13.33 118728772 120426248 12% IGSF11, C3orf30, UPK1B, B4GALT4, TMEM39A, KTELC1, C3orf1, CD80, ADPRH, PLA1A, POPDC2, COX17, V_7355, V_7919 C3orf15, NR1I2, GSK3B, GPR156, LRRC58, FSTL1, NDUFB4, HGD, RABL3 3 q13.33-q26.1 121423349 161982749 32% GOLGB1, IQCB1, EAF2, SLC15A2, ILDR1, CD86, CASR, CSTA, CCDC58, FAM162A, WDR5B, KPNA1, PARP9, hsa-mir-548i-1, hsa-mir-1280, hsa-mir-15b, hsa-mir-16-2 V_0036_LC3666_Iafrate et al. (2004), V_0037_LC3745_Iafrate et al. (2004), V_4352_LC3588_Wong et al. (2007), V_0036, V_0037, V_0562, V_1060, V_1061, DTX3L, PARP15, PARP14, HSPBAP1, DIRC2, SEMA5B, PDIA5, SEC22A, ADCY5, PTPLB, MYLK, CCDC14, V_4353_LC3617_Wong et al. (2007), V_4354_LC3619_Wong et al. (2007), V_4355_LC3723_Wong et al. (2007), V_1062, V_1063, V_1064, V_1374, V_1375, ROPN1, KALRN, UMPS, ITGB5, MUC13, HEG1, SLC12A8, ZNF148, SNX4, OSBPL11, OR7E85P, ALG1L, V_4356_LC3737_Wong et al. (2007), V_4357_LC3748_Wong et al. (2007), V_4358_LC3775_Wong et al. (2007) V_1376, V_1638, V_1639, V_1640, V_1641, ROPN1B, SLC41A3, ALDH1L1, KLF15, CCDC37, ZXDC, UROC1, CHST13, C3orf22, TXNRD3, C3orf46, CHCHD6, V_1642, V_1643, V_1644, V_1645, V_1646, PLXNA1, C3orf56, GPR175, MCM2, PODXL2, ABTB1, MGLL, KLHDC6, SEC61A1, RUVBL1, EEFSEC, DNAJB8, V_2469, V_2470, V_2471, V_2472, V_2473, GATA2, C3orf27, RPN1, RAB7A, ACAD9, KIAA1257, CCDC48, GP9, RAB43, CNBP, COPG, C3orf37, H1FX, V_2474, V_2475, V_2476, V_2477, V_2478, C3orf47, C3orf25, MBD4, IFT122, RHO, H1FOO, PLXND1, TMCC1, TRH, COL29A1, PIK3R4, ATP2C1, ASTE1, V_2479, V_2480, V_2481, V_2482, V_3446, NEK11, NUDT16, MRPL3, CPNE4, ACPP, DNAJC13, ACAD11, CCRL1, UBA5, TMEM108, BFSP2, CDV3, V_3447, V_3448, V_3449, V_3450, V_3451, TOPBP1, TF, SRPRB, RAB6B, C3orf36, SLCO2A1, RYK, RPL39P5, AMOTL2, ANAPC13, CEP63, KY, EPHB1, V_3452, V_3453, V_3454, V_3455, V_3456, PPP2R3A, MSL2, PCCB, STAG1, TMEM22, NCK1, IL20RB, SOX14, CLDN18, DZIP1L, A4GNT, DBR1, ARMC8, V_3457, V_3458, V_3459, V_4352, V_4353, TXNDC6, MRAS, FAM62C, CEP70, FAIM, PIK3CB, FOXL2, C3orf72, MRPS22, COPB2, RBP2, RBP1, NMNAT3, V_4354, V_4355, V_4356, V_4357, V_4358, CLSTN2, TRIM42, SLC25A36, SPSB4, ACPL2, ZBTB38, RASA2, RNF7, GRK7, ATP1B3, XRN1, ATR, PLS1, V_10009, V_10010, V_10011, V_10012, TRPC1, PCOLCE2, PAQR9, CHST2, SLC9A9, C3orf58, PL V_10013, V_10014, V_10015, V_10016, V_5213, V_6206, V_6207, V_6208, V_6209, V_6210, V_6211, V_6212, V_6213, V_6214, V_6215, V_6216, V_6217, V_6218, V_7356, V_7357, V_7358, V_7359, V_7360, V_7361, V_7364, V_7365, V_7366, V_7367, V_7368, V_7369, V_7370, V_7371, V_7372, V_7373, V_7374, V_7375, V_7809, V_7818, V_7843, V_7855, V_7890, V_7925, V_7928, V_7950, V_8063, V_8073, V_8429, V_8430, V_8431, V_8432, V_8433, V_8991, V_8992, V_8993, V_9455, V_9456, V_9457, V_9458, V_22565, V_22574, V_22594, V_22616, V_22630, V_22717, V_22757, V_22851, V_22886, V_23083, V_23145, V_
3 q26.1 162083413 162524785 10% V_7376 3 q26.1-q29 163835874 197791562 50% SI, SLITRK3, BCHE, ZBBX, SERPINI2, WDR49, PDCD10, SERPINI1, GOLIM4, EVI1, MYNN, LRRC34, LRRIQ4, hsa-mir-1263, hsa-mir-720, hsa-mir-551b, hsa-mir-569, hsa-mir-1224, hsa-mir-28, hsa- V_0038_LC3802_Iafrate et al. (2004), V_0039_LC3834_Iafrate et al. (2004), V_0040_LC3895_Iafrate et al. (2004), V_0038, V_0039, V_0040, V_0042, V_0563, LRRC31, SAMD7, SEC62, GPR160, PHC3, PRKCI, SKIL, CLDN11, SLC7A14, RPL22L1, EIF5A2, SLC2A2, TNIK, mir-944, hsa-mir-570, hsa-mir-922 V_0042_LC4028_Iafrate et al. (2004), V_0696_LC4028_Sharp et al. (2005), V_0697_LC4028_Sharp et al. (2005), V_0564, V_0565, V_0566, V_0567, V_0568, PLD1, TMEM212, FNDC3B, GHSR, TNFSF10, AADACL1, ECT2, SPATA16, NLGN1, NAALADL2, TBL1XR1, V_2062_LC4004_Locke et al. (2006), V_2063_LC4020_Locke et al. (2006), V_2064_LC4028_Locke et al. (2006), V_0696, V_0697, V_1065, V_1066, V_1067, KCNMB2, ZMAT3, PIK3CA, KCNMB3, ZNF639, MFN1, GNB4, ACTL6A, MRPL47, NDUFB5, USP13, PEX5L, V_2065_LC4028_Locke et al. (2006), V_4359_LC3802_Wong et al. (2007), V_4360_LC3802_Wong et al. (2007), V_1068, V_1069, V_1377, V_1378, V_1379, TTC14, CCDC39, FXR1, DNAJC19, SOX2, ATP11B, DCUN1D1, MCCC1, LAMP3, MCF2L2, B3GNT5, KLHL6, V_4361_LC3802_Wong et al. (2007), V_4362_LC3840_Wong et al. (2007), V_4363_LC3872_Wong et al. (2007), V_1380, V_1381, V_1382, V_1383, V_1649, KLHL24, YEATS2, MAP6D1, PARL, ABCC5, HTR3D, HTR3C, HTR3E, EIF2B5, DVL3, AP2M1, ABCF3, VWA5B2, V_4364_LC3931_Wong et al. (2007), V_4365_LC3931_Wong et al. (2007), V_4366_LC4028_Wong et al. (2007), V_1650, V_1651, V_1652, V_1653, V_1654, ALG3, ECE2, CAMK2N2, PSMD2, EIF4G1, FAM131A, CLCN2, POLR2H, THPO, CHRD, EPHB3, MAGEF1, VPS8, V_4367_LC4028_Wong et al. (2007), V_4368_LC4048_Wong et al. (2007) V_1655, V_1656, V_1657, V_1658, V_1659, C3orf70, EHHADH, MAP3K13, TMEM41A, LIPH, SENP2, IGF2BP2, C3orf65, TRA2B, ETV5, CRYGS, TBCCD1, V_1660, V_1661, V_1662, V_2062, V_2063, DNAJB11, AHSG, FETUB, HRG, KNG1, EIF4A2, RFC4, ADIPOQ, ST6GAL1, RPL39L, RTP1, MASP1, RTP4, SST, V_2064, V_2065, V_2484, V_2485, V_2486, RTP2, BCL6, LPP, TPRG1, TP63, LEPREL1, CLDN1, CLDN16, TMEM207, IL1RAP, OSTN, UTS2D, CCDC50, V_2487, V_2488, V_2489, V_2490, V_2491, FGF12, C3orf59, HRASLS, ATP13A5, ATP13A4, OPA1, HES1, CPN2, LRRC15, GP5, ATP13A3, TMEM44, LSG1, V_3461, V_3462, V_3463, V_3464, V_3465, FAM43A, C3orf21, ACAP2, PPP1R2, APOD, MUC20, MUC V_3466, V_3467, V_3468, V_3469, V_3470, V_3471, V_3472, V_4359, V_4360, V_4361, V_4362, V_4363, V_4364, V_4365, V_4366, V_4367, V_4368, V_10019, V_10020, V_10021, V_10022, V_10023, V_10024, V_10025, V_10026, V_10027, V_10028, V_10029, V_10030, V_10031, V_5215, V_5376, V_6219, V_6220, V_6221, V_6222, V_6223, V_6224, V_6225, V_6226, V_6227, V_6228, V_6229, V_7377, V_7378, V_7379, V_7380, V_7381, V_7382, V_7383, V_7384, V_7385, V_7386, V_7387, V_7388, V_7389, V_7390, V_7391, V_7392, V_7393, V_7394, V_7395, V_7396, V_7398, V_7399, V_7400, V_7401, V_7873, V_7899, V_7969, V_8111, V_8220, V_8244, V_8435, V_8436, V_8437, V_8438, V_8439, V_89
4 p16.3-p16.1 24423 8375233 62% ZNF595, ZNF732, ZNF141, ZNF721, PIGG, PDE6B, ATP5I, MYL5, MFSD7, PCGF3, CPLX1, GAK, TMEM175, hsa-mir-571, hsa-mir-943, hsa-mir-95 V_2066_LC4068_Locke et al. (2006), V_2067_LC4192_Locke et al. (2006), V_4371_LC4159_Wong et al. (2007), V_0273, V_0346, V_0570, V_2066, V_2067, DGKQ, SLC26A1, IDUA, FGFRL1, RNF212, TMED11P, SPON2, CTBP1, C4orf42, MAEA, KIAA1530, CRIPAK, V_4372_LC4159_Wong et al. (2007), V_4373_LC4228_Wong et al. (2007), V_4374_LC4228_Wong et al. (2007), V_2493, V_2494, V_2495, V_2496, V_3475, NKX1-1, FAM53A, SLBP, TMEM129, TACC3, FGFR3, LETM1, WHSC1, WHSC2, NAT8L, POLN, HAUS3, MXD4, V_4375_LC4231_Wong et al. (2007), V_4376_LC4234_Wong et al. (2007) V_3476, V_3477, V_3478, V_4371, V_4372, ZFYVE28, RNF4, C4orf8, TNIP2, SH3BP2, ADD1, MFSD10, NOP14, GRK4, HTT, C4orf44, RGS12, HGFAC, DOK7, V_4373, V_4374, V_4375, V_4376, V_10032, LRPAP1, ADRA2C, OTOP1, TMEM128, LYAR, ZNF509, STX18, MSX1, CYTL1, STK32B, C4orf6, EVC2, EVC, V_10033, V_5377, V_6233, V_6234, V_6235, CRMP1, C4orf50, JAKMIP1, WFS1, PPP2R2C, MAN2B2, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, V_6236, V_6237, V_6238, V_6239, V_7440, TBC1D14, CCDC96, GRPEL1, SORCS2, PSAPL1, AFAP1, ABLIM2, SH3TC1, HTRA3, ACOX3 V_7441, V_7444, V_7453, V_8022, V_8119, V_8441, V_8442, V_8995, V_9466, V_22505, V_22572, V_22613, V_22694, V_23105, V_23239, V_23701, V_23731, V_23736
4 q35.2 190532127 190909745 10% FRG1, TUBB4Q V_4424_LC6244_Wong et al. (2007), V_4425_LC6244_Wong et al. (2007) V_2563, V_3535, V_4424, V_4425, V_6371, V_6372, V_6373, V_7438, V_8214, V_8281, V_9012, V_22554, V_22559, V_29459, V_29462, V_29463
5 p15.33-p13.1 18263 38962848 16% PLEKHG4B, CCDC127, SDHA, PDCD6, C5orf55, EXOC3, SLC9A3, CEP72, TPPP, ZDHHC11, ZDHHC11B, BRD9, hsa-mir-887, hsa-mir-579, hsa-mir-580 V_0061_LC6634_Iafrate et al. (2004), V_0062_LC6809_Iafrate et al. (2004), V_0704_LC6379_Sharp et al. (2005), V_0061, V_0062, V_0279, V_0280, V_0281, TRIP13, NKD2, SLC12A7, SLC6A19, SLC6A18, TERT, CLPTM1L, SLC6A3, LPCAT1, MRPL36, NDUFS6, IRX4, V_0705_LC6379_Sharp et al. (2005), V_0706_LC6379_Sharp et al. (2005), V_0707_LC6379_Sharp et al. (2005), V_0282, V_0583, V_0584, V_0585, V_0586, IRX2, C5orf38, IRX1, ADAMTS16, MED10, NSUN2, SRD5A1, POLS, ADCY2, C5orf49, FASTKD3, MTRR, SEMA5A, V_0708_LC6659_Sharp et al. (2005), V_0709_LC6669_Sharp et al. (2005), V_2077_LC6379_Locke et al. (2006), V_0587, V_0704, V_0705, V_0706, V_0707, TAS2R1, FAM173B, CCT5, CMBL, Mar-06, ROPN1L, ANKRD33B, DAP, CTNND2, DNAH5, TRIO, FAM105A, V_2078_LC6379_Locke et al. (2006), V_2079_LC6379_Locke et al. (2006), V_2080_LC6379_Locke et al. (2006), V_0708, V_0709, V_0967, V_0968, V_0975, FAM105B, ANKH, FBXL7, Mar-11, ZNF622, FAM134B, MYO10, BASP1, CDH18, CDH12, PRDM9, CDH10, CDH9, V_2081_LC6379_Locke et al. (2006), V_2082_LC6572_Locke et al. (2006), V_2083_LC6669_Locke et al. (2006), V_0976, V_1411, V_1412, V_1413, V_1414, CDH6, RNASEN, C5orf22, PDZD2, GOLPH3, MTMR12, ZFR, SUB1, NPR3, C5orf23, TARS, ADAMTS12, RXFP3, V_2084_LC6669_Locke et al. (2006), V_2085_LC6669_Locke et al. (2006), V_2086_LC6794_Locke et al. (2006), V_2077, V_2078, V_2079, V_2080, V_2081, SLC45A2, AMACR, RAI14, TTC23L, RAD1, BXDC2, DNAJC21, AGXT2, PRLR, SPEF2, IL7R, CAPSL, UGT3A1, V_2087_LC6794_Locke et al. (2006), V_4228_LC6379_Wong et al. (2007), V_4427_LC6379_Wong et al. (2007), V_2082, V_2083, V_2084, V_2085, V_2086, UGT3A2, LMBRD2, SKP2, C5orf33, RANBP3L, SLC1A3, NIPBL, C5orf42, NUP155, WDR70, GDNF, EGFLAM, V_4428_LC6379_Wong et al. (2007), V_4429_LC6379_Wong et al. (2007), V_4430_LC6506_Wong et al. (2007), V_2087, V_2564, V_2565, V_2566, V_2567, LIFR, OSMR V_4431_LC6634_Wong et al. (2007), V_4432_LC6634_Wong et al. (2007), V_4433_LC6655_Wong et al. (2007), V_2568, V_2569, V_2570, V_2571, V_2572, V_4434_LC6659_Wong et al. (2007), V_4435_LC6669_Wong et al. (2007), V_4436_LC6669_Wong et al. (2007), V_2573, V_2574, V_2575, V_2576, V_3536, V_4437_LC6794_Wong et al. (2007), V_4438_LC6794_W V_3537, V_3538, V_3539, V_3540, V_3541, V_3542, V_3543, V_3544, V_3545, V_3546, V_3547, V_3548, V_3549, V_3550, V_3551, V_3552, V_3553, V_4228, V_4427, V_4428, V_4429, V_4430, V_4431, V_4432, V_4433, V_4434, V_4435, V_4436, V_4437, V_4438, V_5051, V_10086, V_10087, V_10088, V_10089, V_10090, V_10091, V_10092, V_10093, V_10094, V_10095, V_10096, V_10097, V_10098, V_10099, V_10100, V_10101, V_10102, V_10103, V_10104, V_10105, V_10106, V_10107, V_10108, V_10109, V_5381, V_5382, V_6376, V_6377, V_6378, V_6379, V_6380, V_6381, V_6382, V_6383, V_6384, V_6385, V_6386, V_6387, V_6388, V_6389, V_6390, V_6391, V_6392, V_6393, V_6394, V_6395, V_7461, V_7462, V_7464, V_7466, V_74
5 p13.1-p12 39261297 42829141 12% C9, DAB2, PTGER4, TTC33, PRKAA1, RPL37, CARD6, C7, HEATR7B2, C6, PLCXD3, OXCT1, C5orf51, FBXO4, V_0063_LC6852_Iafrate et al. (2004), V_4439_LC6842_Wong et al. (2007) V_0063, V_2577, V_4439, V_10111, GHR, SEPP1 V_10112, V_6396, V_9018, V_9509, V_22815
5 p12 44165383 44434020 10% FGF10 V_4441_LC6869_Wong et al. (2007) V_4441, V_6397 Supplementary Table 1 Page 3
5 q35.1-q35.3 171370055 180676573 32% FBXW11, STK10, EFCAB9, UBTD2, SH3PXD2B, NEURL1B, DUSP1, ERGIC1, RPL26L1, ATP6V0E1, C5orf41, hsa-mir-1271, hsa-mir-1229, hsa-mir-340 V_0068_LC7886_Iafrate et al. (2004), V_2092_LC7866_Locke et al. (2006), V_2093_LC7886_Locke et al. (2006), V_0068, V_0372, V_0595, V_0596, V_0597, BNIP1, NKX2-5, STC2, BOD1, CPEB4, C5orf47, MSX2, DRD1, SFXN1, HRH2, CPLX2, THOC3, FAM153B, C5orf25, V_2094_LC7886_Locke et al. (2006), V_4481_LC7886_Wong et al. (2007), V_4482_LC7886_Wong et al. (2007), V_2092, V_2093, V_2094, V_2608, V_2609, KIAA1191, ARL10, NOP16, HIGD2A, CLTB, FAF2, RNF44, PCDH24, GPRIN1, SNCB, EIF4E1B, TSPAN17, V_0372_LC7886_Bejjani et al. (2005) V_2610, V_2611, V_2612, V_2613, V_3586, UNC5A, HK3, UIMC1, ZNF346, FGFR4, NSD1, RAB24, PRELID1, MXD3, LMAN2, RGS14, SLC34A1, PFN3, F12, V_3587, V_3588, V_3589, V_3590, V_3591, GRK6, PRR7, DBN1, PDLIM7, DOK3, DDX41, TMED9, B4GALT7, FAM153A, PROP1, FAM153C, RMND5B, NHP2, V_3592, V_4481, V_4482, V_5221, V_6467, HNRNPAB, AGXT2L2, COL23A1, CLK4, ZNF354A, ZNF354B, ZFP2, ZNF454, GRM6, ZNF354C, ADAMTS2, V_6468, V_6469, V_6470, V_6471, V_6472, RUFY1, HNRNPH1, CBY3, CANX, MAML1, LTC4S, MGAT4B, SQSTM1, C5orf45, TBC1D9B, RNF130, RASGEF1C, V_6473, V_7482, V_7483, V_7484, V_7485, RPS8P7, MAPK9, GFPT2, CNOT6, SCGB3A1, FLT4, OR2Y1, MGAT1, ZFP62, BTNL8, BTNL3, BTNL9, OR2V1, V_7487, V_7488, V_7489, V_7490, V_8278, OR2V2, TRIM7, TRIM41, GNB2L1 V_8500, V_8501, V_8502, V_8503, V_8504, V_9524, V_9525, V_9526, V_9527, V_22514, V_22583, V_22957, V_22980, V_23282, V_23756, V_23758
6 p25.3-p25.1 129242 6043890 24% DUSP22, IRF4, EXOC2, HUS1B, FOXQ1, FOXF2, FOXC1, GMDS, C6orf195, MYLK4, WRNIP1, SERPINB1, V_0070_LC7931_Iafrate et al. (2004), V_0071_LC7931_Iafrate et al. (2004), V_0072_LC7984_Iafrate et al. (2004), V_0070, V_0071, V_0072, V_0284, V_0374, SERPINB9, SERPINB6, NQO2, RIPK1, BPHL, TUBB2A, TUBB2B, PSMG4, SLC22A23, C6orf145, FAM50B, V_4483_LC7931_Wong et al. (2007), V_4484_LC7948_Wong et al. (2007), V_0374_LC7931_Bejjani et al. (2005) V_1121, V_2614, V_2615, V_2616, V_2617, C6orf50, PRPF4B, C6orf146, C6orf201, PECI, CDYL, RPP40, PPP1R3G, FARS2, C6orf202, NRN1 V_3593, V_4483, V_4484, V_10138, V_5223, V_5389, V_5390, V_7550, V_7554, V_7577, V_7578, V_8047, V_8157, V_8505
6 p23-p22.3 13798874 15958435 14% CCDC90A, CD83, JARID2, DTNBP1 V_2620, V_6479, V_7536, V_23784
6 p22.3 18297551 18782309 10% RNF144B hsa-mir-548a-1 V_7924 6 p22.3 20621617 22209843 10% CDKAL1, SOX4 V_1122, V_10143, V_6481, V_6482
6 p22.2 25224721 26694142 20% LRRC16A, SCGN, HIST1H2AA, HIST1H2BA, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, V_4488_LC8136_Wong et al. (2007) V_4488 HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H1E, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H2BG, HIST1H2AE, HIST1H3E, HIST1H1D, HIST1H4F, HIST1H4G, HIST1H3F, HIST1H2BH, HIST1H3G, HIST1H2BI, HIST1H4H, BTN3A2, BTN2A2, BTN3A1, BTN2A3, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1 6 p22.1-p21.1 27188157 44706802 38% PRSS16, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, hsa-mir-877, hsa-mir-1236, hsa-mir-219-1, hsa-mir-1275 V_0076_LC8230_Iafrate et al. (2004), V_0077_LC8268_Iafrate et al. (2004), V_4491_LC8158_Wong et al. (2007), V_0076, V_0077, V_0286, V_0364, V_0599, HIST1H4J, HIST1H4K, HIST1H2BN, HIST1H2AK, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, V_4492_LC8203_Wong et al. (2007), V_4493_LC8208_Wong et al. (2007), V_4669_LC8166_Wong et al. (2007), V_0600, V_1123, V_1124, V_1126, V_1127, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZSCAN16, ZNF192, ZNF193, ZKSCAN4, NKAPL, ZNF187, V_4767_LC8208_Wong et al. (2007) V_1706, V_1707, V_1708, V_1709, V_1710, PGBD1, ZNF323, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, GPX5, SCAND3, OR2B3, OR12D3, UBD, HLA-J, V_1711, V_2622, V_2623, V_2624, V_2625, RNF39, RPP21, PPP1R10, TUBBP1, VARS2, DPCR1, MUC21, CDSN, POU5F1, HLA-C, LTB, APOM, LY6G6C, V_2626, V_3597, V_3598, V_3599, V_3600, LSM2, HSPA1A, EHMT2, C4B, TNXB, ATF6B, PRRT1, RNF5, GPSM3, BTNL2, HLA-DRA, HLA-DRB5, HLA-DOB, V_3601, V_3602, V_3603, V_3604, V_3605, HLA-DPB1, HLA-DPB2, RPS18P12, DAXX, SYNGAP1, ZBTB9, BAK1, GGNBP1, C6orf227, ITPR3, C6orf125, V_3606, V_3607, V_3608, V_3609, V_4491, IP6K3, LEMD2, MLN, GRM4, HMGA1, C6orf1, NUDT3, RPS10, PACSIN1, SPDEF, C6orf106, SNRPC, UHRF1BP1, V_4492, V_4493, V_4669, V_4767, V_10145, TAF11, ANKS1A, TCP11, SCUBE3, ZNF76, DEF6, PPARD, FANCE, RPL10A, TEAD3, TULP1, FKBP5, C6orf81, V_10146, V_10147, V_10148, V_10149, C6orf126, C6orf127, CLPS, LHFPL5, SRPK1, SLC26A8, MAPK14, MAPK13, BRPF3, PNPLA1, ETV7, KCTD20, V_10150, V_5222, V_5387, V_6485, V_6486, STK38, SFRS3, CDKN1A, RAB44, CPNE5, PPIL1, C6orf89, PI16, MTCH1, FGD2, COX6A1P2, PIM1, TMEM217, V_6487, V_6488, V_6489, V_6490, V_6755, TBC1D22B, RNF8, FTSJD2, C6orf129, MDGA1, ZFAND3, V_6756, V_6757, V_6758, V_6759, V_6760, V_6761, V_6762, V_6763, V_6764, V_6765, V_7557, V_7558, V_7559, V_7560, V_7561, V_7562, V_7563, V_7564, V_7565, V_7566, V_7567, V_7568, V_7569, V_7570, V_7571, V_7572, V_7573, V_7574, V_7575, V_7576, V_7956, V_8029, V_8038, V_8131, V_8209, V_8508, V_8509, V_8510, V_8511, V_8512, V_8513, V_9031, V_9032, V_9033, V_9528, V_9529, V_9530, V_22560, V_22632, V_22726, V_22982, V_23078, V_23095, V_23237, V_23243, V_23283, V_23795, V_23796, V_23797, V_23798, V_23799, V_23800, V_23801, V_23802, V_23803, V_23804, V_23805, V_29407
6 p12.3 46829061 48464229 12% GPR116, GPR110, TNFRSF21, CD2AP, GPR111, GPR115, OPN5, C6orf138 V_0718_LC8331_Sharp et al. (2005), V_4494_LC8335_Wong et al. (2007) V_0718, V_2629, V_3611, V_4494
6 q21 106435310 107373212 10% PRDM1, ATG5, AIM1, RTN4IP1, QRSL1, C6orf203 hsa-mir-587 V_6505, V_29394, V_29413, V_29417
6 q23.2-q23.3 135051811 135894155 10% ALDH8A1, HBS1L, MYB, AHI1 hsa-mir-548a-2 6 q25.1 151672566 152283958 10% AKAP12, ZBTB2, RMND1, C6orf211, C6orf97, ESR1 V_4512_LC8905_Wong et al. (2007) V_4512, V_6518, V_8177
6 q25.2 154168780 155355179 12% OPRM1, IPCEF1, MAGI1, RBM16 V_2657, V_2658, V_3646, V_10168, V_7530, V_7531
6 q25.3 156925043 159272494 14% ARID1B, C6orf35, ZDHHC14, SNX9, SYNJ2, SERAC1, GTF2H5, TULP4, TMEM181, DYNLT1, SYTL3, EZR V_2659, V_2660, V_7533, V_7534, V_7535, V_8075
6 q26 161740926 163373131 10% PARK2, PACRG V_4515_LC9007_Wong et al. (2007) V_0371, V_2662, V_2663, V_2664, V_2665, V_3649, V_3650, V_4515, V_10169, V_10170, V_10171, V_5226, V_5228, V_6523, V_8027, V_8110, V_8531, V_8532, V_8533, V_8534, V_8535, V_8536, V_8537, V_9041, V_9042
6 q27 166104161 171008924 22% T, PRR18, SFT2D1, BRP44L, RPS6KA2, RNASET2, FGFR1OP, CCR6, GPR31, TCP10L2, UNC93A, TTLL2, hsa-mir-1913 V_2098_LC9057_Locke et al. (2006), V_4518_LC9057_Wong et al. (2007) V_2098, V_2666, V_2667, V_2668, V_3652, TCP10, C6orf123, C6orf124, MLLT4, C6orf54, KIF25, FRMD1, DACT2, SMOC2, THBS2, WDR27, C6orf120, V_3653, V_3654, V_3655, V_3656, V_3657, PHF10, TCTE3, C6orf70, DLL1, FAM120B, PSMB1, TBP, PDCD2 V_3658, V_4518, V_10172, V_5229, V_5230, V_5231, V_5232, V_5233, V_5234, V_5235, V_6525, V_6526, V_6527, V_6528, V_7546, V_7547, V_7548, V_7549, V_8274, V_8538, V_8539, V_8540, V_8541, V_9554, V_23786, V_23787, V_23788, V_23789, V_23790, V_23791, V_23792, V_23793, V_29404, V_29405, V_29414
7 p22.3-q21.11 10239 80493594 48% FAM20C, PDGFA, PRKAR1B, HEATR2, UNC84A, ADAP1, CYP2W1, C7orf50, GPR146, GPER, ZFAND2A, UNCX, hsa-mir-339, hsa-mir-589, hsa-mir-1302-6, hsa-mir-1183, hsa-mir-148a, hsa-mir-196b, V_0093_LC9158_Iafrate et al. (2004), V_0094_LC9325_Iafrate et al. (2004), V_0096_LC9323_Iafrate et al. (2004), V_0093, V_0094, V_0096, V_0097, V_0099, MICALL2, INTS1, MAFK, TMEM184A, PSMG3, MAD1L1, FTSJ2, NUDT1, SNX8, EIF3B, CHST12, LFNG, C7orf27, hsa-mir-550-1, hsa-mir-550-2, hsa-mir-548n, hsa-mir-1200, hsa-mir-590 V_0097_LC9326_Iafrate et al. (2004), V_0099_LC9326_Iafrate et al. (2004), V_0100_LC9326_Iafrate et al. (2004), V_0100, V_0101, V_0102, V_0103, V_0104, IQCE, TTYH3, AMZ1, GNA12, CARD11, SDK1, FOXK1, RADIL, PAPOLB, MMD2, RNF216L, RBAK, WIPI2, V_0101_LC9327_Iafrate et al. (2004), V_0102_LC9326_Iafrate et al. (2004), V_0103_LC9328_Iafrate et al. (2004), V_0292, V_0332, V_0350, V_0351, V_0375, SLC29A4, TNRC18, FBXL18, ACTB, FSCN1, RNF216, OCM, C7orf28A, RSPH10B, PMS2, AIMP2, EIF2AK1, V_0104_LC9545_Iafrate et al. (2004), V_0719_LC9421_Sharp et al. (2005), V_0720_LC9535_Sharp et al. (2005), V_0605, V_0606, V_0607, V_0608, V_0609, ANKRD61, USP42, CYTH3, C7orf70, RAC1, DAGLB, KDELR2, GRID2IP, ZDHHC4, C7orf26, ZNF12, RSPH10B2, V_0721_LC9545_Sharp et al. (2005), V_0722_LC9554_Sharp et al. (2005), V_0723_LC9631_Sharp et al. (2005), V_0610, V_0611, V_0719, V_0720, V_0721, C7orf28B, C1GALT1, COL28A1, MIOS, RPA3, GLCCI1, ICA1, NXPH1, NDUFA4, PHF14, THSD7A, TMEM106B, V_2099_LC9264_Locke et al. (2006), V_2100_LC9545_Locke et al. (2006), V_2101_LC9554_Locke et al. (2006), V_0722, V_0723, V_0839, V_0841, V_0842, VWDE, SCIN, ARL4A, ETV1, DGKB, TMEM195, MEOX2, SOSTDC1, ANKMY2, BZW2, TSPAN13, AGR2, AGR3, V_2102_LC9561_Locke et al. (2006), V_2103_LC9597_Locke et al. (2006), V_4519_LC9158_Wong et al. (2007), V_1141, V_1142, V_1143, V_1144, V_1145, AHR, SNX13, PRPS1L1, HDAC9, TWIST1, FERD3L, TWISTNB, TMEM196, MACC1, ITGB8, ABCB5, SP8, SP4, V_4520_LC9158_Wong et al. (2007), V_4521_LC9158_Wong et al. (2007), V_4522_LC9158_Wong et al. (2007), V_1146, V_1147, V_1148, V_1149, V_1150, DNAH11, CDCA7L, RAPGEF5, IL6, TOMM7, FAM126A, KLHL7, NUPL2, GPNMB, C7orf30, IGF2BP3, TRA2A, V_4523_LC9158_Wong et al. (2007), V_4524_LC9249_Wong et al. (2007), V_4525_LC9277_Wong et al. (2007), V_1151, V_1152, V_1153, V_1154, V_1155, CCDC126, C7orf46, STK31, NPY, MPP6, DFNA5, OSBPL3, CYCS, C7orf31, NPVF, NFE2L3, HNRNPA2B1, CBX3, V_4526_LC9320_Wong et al. (2007), V_4527_LC9340_Wong et al. (2007), V_4528_LC9358_Wong et al. (2007), V_1426, V_1427, V_1428, V_1720, V_1721, SNX10, KIAA0087, SKAP2, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, V_4529_LC9384_Wong et al. (2007), V_4530_LC9436_W V_1722, V_1723, V_1724, V_1725, V_1726, HOXA11, HOXA13, EVX1, HIBADH, TAX1BP1, JAZF1, CREB5, CPVL, CHN2, PRR15, WIPF3, SCRN1, FKBP14, V_1727, V_1728, V_2099, V_2100, V_2101, PLEKHA8, C7orf41, ZNRF2, NOD1, GGCT, GARS, CRHR V_2102, V_2103, V_2669, V_2670, V_2671, V_2672, V_2673, V_2674, V_2675, V_2676, V_2677, V_2678, V_2679, V_2680, V_2681, V_2682, V_2683, V_2684, V_2685, V_2686, V_2687, V_2688, V_2689, V_2690, V_2691, V_2692, V_2693, V_2694, V_2695, V_2696, V_2697, V_2698, V_2699, V_2700, V_2701, V_3659, V_3660, V_3661, V_3662, V_3663, V_3664, V_3665, V_3666, V_3667, V_3668, V_3669, V_3670, V_3671, V_3672, V_3673, V_3674, V_3675, V_3676, V_3677, V_3678, V_3679, V_3680, V_3681, V_3682, V_3683, V_3684, V_3685, V_3686, V_3687, V_4519, V_4520, V_4521, V_4522, V_4523, V_4524, V_4525, V_4526, V_45
7 q21.11 84364514 85351688 10% SEMA3D V_3689, V_8084, V_9062
7 q21.13 89702166 90730234 10% STEAP1, STEAP2, C7orf63, GTPBP10, CLDN12, PFTK1 V_7654, V_7655, V_8573
7 q21.2-q36.3 91745323 159124355 38% CYP51A1, KRIT1, ANKIB1, GATAD1, PEX1, C7orf64, FAM133B, CDK6, SAMD9, SAMD9L, HEPACAM2, CCDC132, hsa-mir-1285-1, hsa-mir-653, hsa-mir-489, hsa-mir-591, hsa-mir-25, hsa-mir-93, hsa-mir- V_0107_LC9766_Iafrate et al. (2004), V_0108_LC9826_Iafrate et al. (2004), V_0110_LC10016_Iafrate et al. (2004), V_0107, V_0108, V_0110, V_0111, V_0293, CALCR, GNGT1, TFPI2, GNG11, BET1, COL1A2, CASD1, SGCE, PPP1R9A, PON1, PON3, PON2, ASB4, PDK4, 106b, hsa-mir-548o, hsa-mir-592, hsa-mir-593, hsa-mir-129-1, hsa-mir-182, hsa-mir-96, V_0111_LC10099_Iafrate et al. (2004), V_0724_LC9769_Sharp et al. (2005), V_0725_LC10016_Sharp et al. (2005), V_0614, V_0615, V_0616, V_0617, V_0618, DYNC1I1, SLC25A13, SHFM1, DLX6, DLX5, ACN9, TAC1, ASNS, OCM2, LMTK2, BHLHA15, TECPR1, BRI3, hsa-mir-183, hsa-mir-335, hsa-mir-29a, hsa-mir-29b-1, hsa-mir-490, hsa-mir-548f-4, hsa- V_0726_LC10016_Sharp et al. (2005), V_0727_LC10049_Sharp et al. (2005), V_0728_LC10049_Sharp et al. V_0619, V_0620, V_0621, V_0622, V_0623, BAIAP2L1, NPTX2, TMEM130, TRRAP, SMURF1, KPNA7, ARPC1B, PDAP1, BUD31, PTCD1, CPSF4, ZNF789, mir-1975, hsa-mir-671, hsa-mir-153-2, hsa-mir-595 (2005), V_0729_LC10082_Sharp et al. (2005), V_0730_LC10082_Sharp et al. (2005), V_2104_LC9753_Locke et al. V_0624, V_0625, V_0626, V_0724, V_0725, ZNF394, ZKSCAN5, C7orf38, ZNF655, ZNF498, CYP3A5, CYP3A7, CYP3A5P1, CYP3A4, CYP3A43, TRIM4, GJC3, (2006), V_2105_LC9769_Locke et al. (2006), V_2106_LC9769_Locke et al. (2006), V_2107_LC10016_Locke et al. V_0726, V_0727, V_0728, V_0729, V_0730, AZGP1, AZGP1P1, ZKSCAN1, ZSCAN21, ZNF3, COPS6, MCM7, AP4M1, TAF6, CNPY4, MBLAC1, C7orf59, (2006), V_2108_LC10016_Locke et al. (2006), V_2109_LC10016_Locke et al. (2006), V_2110_LC10016_Locke et V_0836, V_1156, V_1157, V_1158, V_1159, C7orf43, GAL3ST4, GPC2, STAG3, GATS, PVRIG, PMS2L1, PILRB, PILRA, ZCWPW1, MEPCE, C7orf47, C7orf61, al. (2006), V_2111_LC10082_Locke et al. (2006), V_4547_LC9750_Wong et al. (2007), V_4548_LC9750_Wong et V_1160, V_1161, V_1163, V_1164, V_1165, TSC22D4, C7orf51, AGFG2, LRCH4, FBXO24, PCOLCE, MOSPD3, TFR2, ACTL6B, GNB2, GIGYF1, POP7, EPO, al. (2007), V_4549_LC9755_Wong et al. (2007), V_4550_LC9756_Wong et al. (2007), V_4551_LC9756_Wong et al. V_1166, V_1167, V_1168, V_1169, V_1170, ZAN, EPHB4, SLC12A9, TRIP6, SRRT, UFSP1, ACHE, MUC3B, MUC3A, MUC12, MUC17, TRIM56, SERPINE1, (2007), V_4552_LC9762_Wong et al. (2007), V_4553_LC9769_Wong et al. (2007), V_4554_LC9806_Wong et al. V_1171, V_1172, V_1173, V_1174, V_1429, AP1S1, VGF, C7orf52, MOGAT3, PLOD3, ZNHIT1, CLDN15, FIS1, RABL5, EMID2, MYL10, CUX1, SH2B2, (2007), V_4555_LC9863_Wong et al. (2007), V_4556_LC9887_Wong et al. (2007), V_4557_LC9892_Wong et al. V_1430, V_1431, V_1432, V_1433, V_1434, PRKRIP1, ORAI2, ALKBH4, LRWD1, POLR2J, RASA4B, POLR2J3, SPDYE2, RASA4, POLR2J2, FAM185A, (2007), V_4558_LC9916_Wong et al. (2007), V_4559_LC9 V_1435, V_1436, V_1437, V_1438, V_1731, FBXL13, LRRC17, ARMC10, NAPEPLD, DPY19L2P2, PM V_1732, V_1733, V_1734, V_1735, V_1736, V_1737, V_1738, V_1739, V_1740, V_1741, V_1742, V_1743, V_1744, V_1745, V_1746, V_1747, V_1748, V_1749, V_1750, V_2104, V_2105, V_2106, V_2107, V_2108, V_2109, V_2110, V_2111, V_2705, V_2706, V_2707, V_2708, V_2709, V_2710, V_2711, V_2712, V_2713, V_2714, V_2715, V_2716, V_2717, V_2718, V_2719, V_2720, V_2721, V_2722, V_3691, V_3692, V_3693, V_3694, V_3695, V_3696, V_3697, V_3698, V_3699, V_3700, V_3701, V_3702, V_3703, V_3704, V_3705, V_3706, V_3707, V_3708, V_3709, V_3710, V_3711, V_3712, V_3713, V_3714, V_3715, V_4187, V_4547, V_4548, V_4549, V_4550, V_4551, V_4552, V_45 Supplementary Table 1 Page 4
8 p23.3-q24.3 47943 146236289 58% OR4F21, ZNF596, FAM87A, FBXO25, C8orf42, ERICH1, C8orf68, CLN8, ARHGEF10, KBTBD11, MYOM2, CSMD1, hsa-mir-596, hsa-mir-548i-3, hsa-mir-597, hsa-mir-124-1, hsa-mir-598, hsa-mir-383, hsa- V_0116_LC10436_Iafrate et al. (2004), V_0119_LC10711_Iafrate et al. (2004), V_0121_LC10727_Iafrate et al. V_0116, V_0119, V_0121, V_0123, V_0124, MCPH1, ANGPT2, AGPAT5, XKR5, DEFB1, DEFA6, DEFA4, DEFA1, DEFT1P, DEFA3, DEFA5, FAM90A3, mir-320a, hsa-mir-548h-4, hsa-mir-486, hsa-mir-124-2, hsa-mir-599, hsa-mir-875, hsa- (2004), V_0123_LC10906_Iafrate et al. (2004), V_0124_LC10922_Iafrate et al. (2004), V_0731_LC10225_Sharp et V_0294, V_0295, V_0296, V_0297, V_0298, FAM90A13, FAM90A5, FAM90A20, DEFB108P2, DEFB103A, SPAG11B, DEFB104B, DEFB106B, DEFB105B, mir-1273, hsa-mir-548a-3, hsa-mir-2053, hsa-mir-548d-1, hsa-mir-1204, hsa-mir-1205, al. (2005), V_0732_LC10225_Sharp et al. (2005), V_0733_LC10380_Sharp et al. (2005), V_0734_LC10380_Sharp V_0299, V_0300, V_0337, V_0338, V_0348, DEFB107B, FAM90A23, FAM90A22, FAM90A15, FAM90A10, FAM90A8, FAM90A16, FAM90A9, DEFB107A, hsa-mir-1207, hsa-mir-1208, hsa-mir-30b, hsa-mir-30d, hsa-mir-151, hsa-mir-937, hsa- et al. (2005), V_0735_LC10380_Sharp et al. (2005), V_0736_LC10380_Sharp et al. (2005), V_0349, V_0354, V_0627, V_0628, V_0629, DEFB105A, DEFB106A, DEFB104A, SPAG11A, DEFB103B, DEFB4, DEFB108P1, FAM66E, FAM90A11, mir-661, hsa-mir-939, hsa-mir-1234 V_0737_LC10380_Sharp et al. (2005), V_0738_LC10380_Sharp et al. (2005), V_0739_LC10380_Sharp et al. V_0630, V_0631, V_0632, V_0633, V_0634, FAM90A12, MFHAS1, ERI1, PPP1R3B, TNKS, MSRA, RP1L1, C8orf74, SOX7, XKR6, C8orf16, C8orf8, MTMR9, (2005), V_0740_LC10408_Sharp et al. (2005), V_2112_LC10225_Locke et al. (2006), V_2113_LC10225_Locke et V_0635, V_0636, V_0637, V_0638, V_0639, AMAC1L2, TDH, C8orf12, FAM167A, BLK, C8orf14, GATA4, C8orf49, NEIL2, FDFT1, CTSB, DEFB134, ZNF705D, al. (2006), V_2114_LC10380_Locke et al. (2006), V_2115_LC10380_Locke et al. (2006), V_2116_LC10380_Locke V_0640, V_0641, V_0642, V_0643, V_0644, FAM86B1, DEFB130, ZNF705F, FAM66A, FAM86C, OR7E8P, LONRF1, DLC1, C8orf48, SGCZ, TUSC3, MSR1, et al. (2006), V_2117_LC10380_Locke et al. (2006), V_2118_LC10380_Locke et al. (2006), V_0645, V_0646, V_0647, V_0648, V_0731, FGF20, EFHA2, ZDHHC2, CNOT7, VPS37A, MTMR7, SLC7A2, PDGFRL, MTUS1, FGL1, PCM1, ASAH1, NAT1, V_2119_LC10380_Locke et al. (2006), V_2120_LC10408_Locke et al. (2006), V_2121_LC10408_Locke et al. V_0732, V_0733, V_0734, V_0735, V_0736, NAT2, PSD3, SH2D4A, CSGALNACT1, INTS10, LPL, SLC18A1, ATP6V1B2, LZTS1, GFRA2, DOK2, XPO7, NPM2, (2006), V_2122_LC10408_Locke et al. (2006), V_2123_LC10460_Locke et al. (2006), V_2124_LC10461_Locke et V_0737, V_0738, V_0739, V_0740, V_0835, FGF17, EPB49, FAM160B2, NUDT18, HR, REEP4, LGI3, SFTPC, BMP1, PHYHIP, POLR3D, PIWIL2, SLC39A14, al. (2006), V_2125_LC10461_Locke et al. (2006), V_2126_LC10727_Locke et al. (2006), V_4276_LC10225_Wong V_0969, V_0970, V_0979, V_0980, V_1175, PPP3CC, SORBS3, PDLIM2, KIAA1967, BIN3, EGR3, RHOBTB2, TNFRSF10B, TNFRSF10C, TNFRSF10D, et al. (2007), V_4575_LC10225_Wong et al. (2007), V_457 V_1176, V_1177, V_1178, V_1179, V_1180, TNFRSF10A, CHMP7, LOXL2, ENTPD4, SLC25A37, NKX3 V_1181, V_1182, V_1183, V_1184, V_1185, V_1186, V_1188, V_1189, V_1190, V_1191, V_1192, V_1193, V_1194, V_1195, V_1196, V_1197, V_1198, V_1199, V_1200, V_1201, V_1202, V_1203, V_1204, V_1205, V_1206, V_1207, V_1439, V_1440, V_1441, V_1442, V_1443, V_1444, V_1445, V_1446, V_1447, V_1448, V_1449, V_1450, V_1451, V_1452, V_1453, V_1454, V_1455, V_1456, V_1457, V_1458, V_1459, V_1460, V_1461, V_1462, V_1463, V_1464, V_1465, V_1466, V_1467, V_1468, V_1469, V_1751, V_1752, V_1753, V_1754, V_1755, V_1756, V_1757, V_1758, V_1759, V_1760, V_1761, V_1762, V_1763, V_1764, V_1765, V_17
9 p24.3-p24.1 34994 4614818 24% FAM138C, FOXD4, CBWD1, C9orf66, DOCK8, KANK1, DMRT1, DMRT3, DMRT2, SMARCA2, VLDLR, KCNV2, V_0125_LC11024_Iafrate et al. (2004), V_0126_LC11024_Iafrate et al. (2004) V_0125, V_0126, V_1208, V_1209, V_1210, KIAA0020, CARM1L, RFX3, GLIS3, SLC1A1, C9orf68 V_1211, V_1807, V_1808, V_1809, V_1810, V_1811, V_2780, V_2781, V_2782, V_2783, V_2784, V_2785, V_3753, V_3754, V_3755, V_7738, V_7742, V_7746, V_8006, V_8188, V_8207, V_8616, V_8617, V_8618, V_8619, V_9101, V_9102, V_9103, V_9609, V_10279, V_10280, V_10281, V_10282, V_10283, V_10284, V_22531, V_23900
9 p21.1 31015254 32118919 10% V_2814, V_3768, V_6684, V_7741, V_8173, V_8627
9 p13.2-p12 36625615 38436288 10% MELK, PAX5, ZCCHC7, GRHPR, ZBTB5, POLR1E, FBXO10, TOMM5, FRMPD1, RG9MTD3, EXOSC3, WDR32, V_2127_LC11326_Locke et al. (2006) V_1823, V_2127, V_6687, V_10300 MCART1, SHB, ALDH1B1, IGFBPL1
9 q21.33-q22.1 89890865 90423974 12% DAPK1, CTSL1 V_6693, V_23000, V_23907, V_23908, V_23909
9 q22.1-q22.31 90956221 96037474 10% SPIN1, NXNL2, C9orf47, S1PR3, SHC3, C9orf33, CKS2, SECISBP2, SEMA4D, GADD45G, DIRAS2, SYK, AUH, V_0760_LC11496_Sharp et al. (2005), V_0761_LC11498_Sharp et al. (2005), V_4645_LC11529_Wong et al. (2007) V_0760, V_0761, V_1829, V_4188, V_4645, NFIL3, ROR2, SPTLC1, IARS, NOL8, CENPP, OGN, OMD, ASPN, ECM2, IPPK, BICD2, ANKRD19, ZNF484, V_6694, V_6695, V_6696, V_6697, V_7751, FGD3, SUSD3, C9orf89, NINJ1, WNK2 V_7752, V_7753, V_7754, V_9619, V_10304
9 q31.2 110458112 111020328 10% 9 q33.2-q34.3 124287624 141064884 52% DAB2IP, TTLL11, NDUFA8, MORN5, LHX6, RBM18, MRRF, PTGS1, OR1J1, OR1J2, OR1N1, OR1N2, OR1L8, hsa-mir-600, hsa-mir-601, hsa-mir-181a-2, hsa-mir-181b-2, hsa-mir-199b, hsa-mir-219-2, V_0132_LC11835_Iafrate et al. (2004), V_0133_LC11864_Iafrate et al. (2004), V_0134_LC11864_Iafrate et al. V_0132, V_0133, V_0134, V_0651, V_0652, OR1Q1, OR1B1, OR1L1, OR1L3, OR1L4, OR1L6, FAM33B, OR5C1, PDCL, OR1K1, RC3H2, ZBTB6, ZBTB26, hsa-mir-126, hsa-mir-602 (2004), V_4654_LC11759_Wong et al. (2007), V_4655_LC11759_Wong et al. (2007), V_4656_LC11759_Wong et V_0653, V_0654, V_1215, V_1832, V_1833, RABGAP1, GPR21, C9orf45, STRBP, C9orf56, CRB2, DENND1A, LHX2, NEK6, PSMB7, GPR144, NR5A1, NR6A1, al. (2007), V_4657_LC11835_Wong et al. (2007), V_4658_LC11835_Wong et al. (2007), V_4659_LC11848_Wong V_1834, V_1835, V_1836, V_2837, V_2838, OLFML2A, WDR38, RPL35, ARPC5L, GOLGA1, C9orf126, PPP6C, RABEPK, HSPA5, GAPVD1, MAPKAP1, PBX3, et al. (2007), V_4660_LC11849_Wong et al. (2007), V_4661_LC11864_Wong et al. (2007), V_2839, V_3781, V_3782, V_3783, V_3784, FAM125B, LMX1B, ZBTB43, ZBTB34, RALGPS1, ANGPTL2, GARNL3, SLC2A8, ZNF79, RPL12, LRSAM1, V_4662_LC11864_Wong et al. (2007), V_4663_LC11864_Wong et al. (2007) V_3785, V_3786, V_3787, V_4654, V_4655, FAM129B, STXBP1, TTC16, C9orf117, TOR2A, SH2D3C, CDK9, FPGS, ENG, AK1, ST6GALNAC6, ST6GALNAC4, V_4656, V_4657, V_4658, V_4659, V_4660, PIP5KL1, DPM2, FAM102A, NAIF1, SLC25A25, PTGES2, LCN2, C9orf16, CIZ1, DNM1, GOLGA2, C9orf119, V_4661, V_4662, V_4663, V_5265, V_5415, TRUB2, COQ4, SLC27A4, TMSL4, URM1, CERCAM, ODF2, GLE1, SPTAN1, WDR34, SET, PKN3, ZDHHC12, V_6715, V_6716, V_6717, V_6718, V_6719, ZER1, TBC1D13, ENDOG, C9orf114, CCBL1, LRRC8A, PHYHD1, DOLK, NUP188, SH3GLB2, FAM73B, DOLPP1, V_6720, V_6721, V_6722, V_6723, V_6724, CRAT, PPP2R4, IER5L, METTL11A, C9orf50, ASB6, PRRX2, PTGES, TOR1B, TOR1A, C9orf78, USP20, FNBP1, V_6725, V_6726, V_6727, V_6728, V_6729, GPR107, FREQ, HMCN2, ASS1, FUBP3, PRDM12, EXOSC2, ABL1, QRFP, FIBCD1, LAMC3, AIF1L, NUP214, V_7724, V_7725, V_7726, V_7727, V_7728, FAM78A, PPAPDC3, BAT2L, POMT1, UCK1, RAPGEF1, M V_7729, V_7730, V_7731, V_7732, V_7733, V_7734, V_7735, V_7736, V_8279, V_8633, V_8634, V_8635, V_9622, V_9623, V_9624, V_9625, V_9626, V_9627, V_9628, V_9629, V_9630, V_9631, V_10310, V_10311, V_10312, V_10313, V_10314, V_10315, V_22581, V_22622, V_22634, V_23026, V_23079, V_23294, V_23886, V_23887, V_23888, V_23889, V_23890, V_23891, V_23892, V_23893, V_23894, V_23895, V_23896, V_23897, V_29449
10 p15.3-p15.1 61001 4114458 12% ZMYND11, DIP2C, C10orf108, LARP5, GTPBP4, IDI2, IDI1, WDR37, ADARB2, PFKP, PITRM1, KLF6 V_4664_LC11931_Wong et al. (2007) V_1477, V_2840, V_2841, V_2842, V_2843, V_3788, V_3789, V_4664, V_5572, V_5573, V_6846, V_6857, V_6858, V_6887, V_8269, V_8636, V_8637, V_9137, V_9632, V_9633, V_23392
10 p13 12208612 12895859 10% SEC61A2, NUDT5, CDC123, CAMK1D V_5577, V_8123, V_9636, V_23378
10 p13 12961366 13692471 10% CCDC3, OPTN, MCM10, UCMA, PHYH, SEPHS1, BEND7, PRPF18, FRMD4A V_4665_LC12095_Wong et al. (2007), V_4666_LC12101_Wong et al. (2007) V_2849, V_4665, V_4666, V_5578, V_10317, V_10318
10 q11.22 46688712 47760320 12% FAM35B, SYT15, GPRIN2, ANXA8L1, PPYR1, FAM25B, BMS1P2, CTSLL7, FAM25HP V_0764_LC12274_Sharp et al. (2005), V_2153_LC12274_Locke et al. (2006), V_4685_LC12274_Wong et al. V_0307, V_0764, V_1224, V_1483, V_1880, (2007), V_4687_LC12274_Wong et al. (2007), V_4688_LC12274_Wong et al. (2007), V_4689_LC12274_Wong et V_2153, V_2863, V_3798, V_4685, V_4687, al. (2007) V_4688, V_4689, V_5267, V_6867, V_8202, V_8277, V_8645, V_8646, V_8648, V_8649, V_8650, V_8652, V_8653, V_9149, V_9150, V_9151, V_9152, V_9639, V_9640, V_10325
10 q21.2 63395077 63993450 12% C10orf107, ARID5B, RTKN2 V_6877 10 q21.3-q23.1 67390887 82743237 30% CTNNA3, LRRTM3, DNAJC12, SIRT1, HERC4, MYPN, ATOH7, PBLD, HNRNPH3, RUFY2, DNA2, SLC25A16, hsa-mir-1254, hsa-mir-606 V_0138_LC12468_Iafrate et al. (2004), V_0762_LC12488_Sharp et al. (2005), V_0765_LC12481_Sharp et al. V_0138, V_0403, V_0762, V_0765, V_1230, TET1, CCAR1, STOX1, DDX50, DDX21, KIAA1279, SRGN, VPS26A, SUPV3L1, HKDC1, HK1, TACR2, TSPAN15, (2005), V_2157_LC12477_Locke et al. (2006), V_2158_LC12478_Locke et al. (2006), V_2159_LC12481_Locke et V_1487, V_2157, V_2158, V_2159, V_2160, NEUROG3, C10orf35, COL13A1, H2AFY2, AIFM2, TYSND1, SAR1A, PPA1, NPFFR1, LRRC20, EIF4EBP2, al. (2006), V_2160_LC12485_Locke et al. (2006), V_2161_LC12488_Locke et al. (2006), V_4701_LC12398_Wong V_2161, V_2876, V_2877, V_2878, V_2879, NODAL, KIAA1274, PRF1, ADAMTS14, C10orf27, SGPL1, PCBD1, UNC5B, SLC29A3, CDH23, C10orf105, et al. (2007), V_4703_LC12451_Wong et al. (2007), V_4704_LC12478_Wong et al. (2007) V_2880, V_2881, V_3807, V_3808, V_3809, C10orf54, PSAP, CHST3, SPOCK2, ASCC1, C10orf104, DDIT4, DNAJB12, CBARA1, CCDC109A, OIT3, V_3810, V_3811, V_3812, V_3813, V_3814, PLA2G12B, P4HA1, NUDT13, ECD, FAM149B1, DNAJC9, C10orf103, MRPS16, TTC18, ANXA7, ZMYND17, V_4701, V_4703, V_4704, V_5417, V_5418, PPP3CB, USP54, MYOZ1, SYNPO2L, AGAP5, GLUDP3, SEC24C, FUT11, CHCHD1, KIAA0913, NDST2, V_5601, V_5602, V_5603, V_5604, V_6879, CAMK2G, C10orf55, PLAU, VCL, AP3M1, ADK, MYST4, DUPD1, DUSP13, SAMD8, VDAC2, COMTD1, ZNF503, V_6880, V_6881, V_6882, V_6883, V_6884, C10orf41, C10orf11, KCNMA1, DLG5, POLR3A, RPS24, ZMIZ1, PPIF, ZCCHC24, SFTPA2, SFTPA1, FAM22B, V_6885, V_6886, V_6888, V_7847, V_8175, FAM22E, SFTPD, PLAC9, ANXA11, MAT1A, DYDC1, DYDC2, C10orf57, TSPAN14, SH2D4B V_8210, V_8230, V_8659, V_8660, V_8661, V_8662, V_8663, V_9163, V_9164, V_9165, V_10334, V_10335, V_22672, V_22788, V_22963, V_23049, V_23153, V_23391
10 q23.32-q25.1 93165108 109376047 24% HECTD2, PPP1R3C, TNKS2, SRP9L1, FGFBP3, BTAF1, CPEB3, Mar-05, IDE, KIF11, HHEX, EXOC6, CYP26C1, hsa-mir-607, hsa-mir-1287, hsa-mir-608, hsa-mir-146b, hsa-mir-1307, hsa-mir-936, hsa- V_4709_LC12564_Wong et al. (2007), V_4710_LC12569_Wong et al. (2007), V_4711_LC12583_Wong et al. (2007) V_1231, V_1489, V_1886, V_2887, V_2888, CYP26A1, MYOF, CEP55, GPR120, RBP4, PDE6C, C10orf4, LGI1, TMEM20, PIPSL, PLCE1, NOC3L, TBC1D12, mir-609 V_2889, V_2890, V_3817, V_3818, V_3819, HELLS, CYP2C18, CYP2C19, CYP2C9, CYP2C8, C10orf129, PDLIM1, SORBS1, ALDH18A1, TCTN3, ENTPD1, V_3820, V_4709, V_4710, V_4711, V_5607, C10orf131, CC2D2B, CCNJ, ZNF518A, BLNK, DNTT, OPALIN, TLL2, TM9SF3, PIK3AP1, LCOR, C10orf12, SLIT1, V_5608, V_5609, V_5610, V_6840, V_6841, ARHGAP19, FRAT1, FRAT2, RRP12, PGAM1, EXOSC1, ZDHHC16, MMS19, UBTD1, ANKRD2, NPL2, C10orf62, V_6842, V_6843, V_6844, V_6894, V_8062, MORN4, AVPI1, ZFYVE27, SFRP5, GOLGA7B, CRTAC1, C10orf28, LOXL4, PYROXD2, HPS1, HPSE2, CNNM1, V_8665, V_8666, V_8667, V_9167, V_9645, GOT1, NKX2-3, SLC25A28, ENTPD7, COX15, CUTC, ABCC2, DNMBP, CPN1, ERLIN1, CHUK, CWF19L1, V_10339, V_10340, V_22755, V_22796, BLOC1S2, PKD2L1, SCD, WNT8B, SEC31B, NDUFB8, HIF1AN, PAX2, FAM178A, SEMA4G, MRPL43, C10orf2, V_22829, V_23376, V_23394, V_29402, LZTS2, PDZD7, SFXN3, KAZALD1, C10orf1, TLX1, LBX1, BTRC, POLL, FBXW4, FGF8, NPM3, MGEA5, KCNIP2, V_29427 C10orf76, HPS6, LDB1, PPRC1, NOLC1, ELOVL3, PITX3, GBF1, NFKB2, PSD, FBXL15, CUEDC2, C10orf95, TMEM180, ACTR1A, SUFU, TRIM8, ARL3, SFXN2, C10orf26, CYP17A1, C10orf32, AS3MT, CNNM2, NT5C2, INA, PCGF6, TAF5, USMG5, PDCD11, CALHM2, CALHM1, CA Supplementary Table 1 Page 5
10 q25.2-q26.3 114067767 135503747 22% ACSL5, ZDHHC6, VTI1A, TCF7L2, HABP2, NRAP, CASP7, C10orf81, DCLRE1A, NHLRC2, ADRB1, C10orf118, hsa-mir-2110, hsa-mir-202 V_0370_LC12807_Le Caignec et al. (2005), V_0766_LC12664_Sharp et al. (2005), V_2162_LC12807_Locke et al. V_0370, V_0405, V_0406, V_0407, V_0766, TDRD1, VWA2, AFAP1L2, ABLIM1, FAM160B1, TRUB1, ATRNL1, GFRA1, C10orf96, PNLIPRP3, PNLIP, (2006), V_4713_LC12678_Wong et al. (2007), V_4714_LC12735_Wong et al. (2007), V_4715_LC12747_Wong et V_1232, V_1233, V_1234, V_1491, V_1887, PNLIPRP1, C10orf82, HSPA12A, C10orf134, KIAA1598, VAX1, KCNK18, SLC18A2, PDZD8, EMX2, RAB11FIP2, al. (2007), V_4716_LC12779_Wong et al. (2007), V_4717_LC12807_Wong et al. (2007), V_4718_LC12807_Wong V_2162, V_2891, V_2892, V_2893, V_2894, PRLHR, C10orf46, NANOS1, EIF3A, FAM45A, SFXN4, PRDX3, GRK5, RGS10, TIAL1, BAG3, INPP5F, C10orf119, et al. (2007), V_4719_LC12807_Wong et al. (2007), V_4720_LC12807_Wong et al. (2007), V_2895, V_2896, V_3822, V_3823, V_3824, SEC23IP, PPAPDC1A, C10orf85, BRWD2, FGFR2, ATE1, NSMCE4A, TACC2, BTBD16, PLEKHA1, HTRA1, V_4721_LC12807_Wong et al. (2007), V_4722_LC12807_Wong et al. (2007), V_4723_LC12807_Wong et al. V_3825, V_3826, V_3827, V_3828, V_3829, DMBT1, C10orf120, CUZD1, FAM24B, FAM24A, C10orf88, PSTK, IKZF5, ACADSB, HMX3, HMX2, BUB3, GPR26, (2007), V_4724_LC12807_Wong et al. (2007) V_3830, V_4713, V_4714, V_4715, V_4716, CPXM2, CHST15, OAT, FAM53B, METTL10, FAM175B, ZRANB1, CTBP2, C10orf122, C10orf137, MMP21, UROS, V_4717, V_4718, V_4719, V_4720, V_4721, BCCIP, DHX32, FANK1, ADAM12, C10orf90, DOCK1, NPS, FOXI2, CLRN3, PTPRE, MKI67, MGMT, EBF3, GLRX3, V_4722, V_4723, V_4724, V_5269, V_5270, TCERG1L, PPP2R2D, BNIP3, JAKMIP3, DPYSL4, STK32C, LRRC27, PWWP2B, C10orf91, INPP5A, NKX6-2, V_5271, V_5272, V_5273, V_5613, V_5614, C10orf92, C10orf93, GPR123, KNDC1, UTF1, VENTX, ADAM8, TUBGCP2, ZNF511, CALY, PRAP1, C10orf125, V_5615, V_5616, V_5617, V_6847, V_6848, ECHS1, PAOX, MTG1, CYP2E1, SYCE1, FRG2B V_6849, V_6850, V_6851, V_6852, V_8120, V_8262, V_8669, V_8670, V_8671, V_8672, V_8673, V_8674, V_9169, V_9170, V_9171, V_9646, V_9647, V_9648, V_10341, V_10342, V_10343, V_22547, V_22563, V_22727, V_23379, V_23380, V_23381, V_23382
11 p15.5-p15.4 213681 6622733 22% RIC8A, SIRT3, PSMD13, NLRP6, ATHL1, IFITM5, IFITM2, IFITM1, IFITM3, B4GALNT4, PKP3, SIGIRR, ANO9, hsa-mir-210, hsa-mir-675, hsa-mir-483 V_0767_LC12925_Sharp et al. (2005), V_2163_LC12925_Locke et al. (2006), V_2164_LC12925_Locke et al. V_0408, V_0409, V_0410, V_0411, V_0412, PTDSS2, RNH1, HRAS, LRRC56, C11orf35, RASSF7, PHRF1, IRF7, MUPCDH, SCT, DRD4, DEAF1, TMEM80, (2006), V_4725_LC12865_Wong et al. (2007), V_4726_LC12865_Wong et al. (2007), V_4728_LC12896_Wong et V_0413, V_0414, V_0767, V_1235, V_2163, EPS8L2, TALDO1, PDDC1, CEND1, SLC25A22, LRDD, RPLP2, PNPLA2, EFCAB4A, CD151, POLR2L, TSPAN4, al. (2007), V_4729_LC12896_Wong et al. (2007), V_4730_LC12916_Wong et al. (2007) V_2164, V_2897, V_2898, V_2899, V_2900, CHID1, AP2A2, MUC6, MUC2, MUC5B, TOLLIP, BRSK2, DUSP8, C11orf81, KRTAP5-1, KRTAP5-3, KRTAP5-5, V_2901, V_2902, V_2903, V_3831, V_3832, KRTAP5-6, CTSD, SYT8, TNNI2, LSP1, C11orf89, TNNT3, MRPL23, IGF2, INS, IGF2AS, TH, ASCL2, C11orf21, V_3833, V_3834, V_3835, V_3836, V_4725, TSPAN32, CD81, TSSC4, TRPM5, KCNQ1, CDKN1C, SLC22A18, PHLDA2, NAP1L4, CARS, OSBPL5, MRGPRG, V_4726, V_4728, V_4729, V_4730, V_5421, MRGPRE, ZNF195, ART5, ART1, CHRNA10, NUP98, RHOG, STIM1, RRM1, OR52B4, TRIM21, OR52K2, V_6911, V_6912, V_6914, V_6915, V_6917, OR52K3P, OR52K1, OR52M1, C11orf40, OR52I2, OR52I1, TRIM68, OR51D1, OR51E1, OR51E2, OR51C1P, V_6920, V_6921, V_6924, V_6925, V_6926, MMP26, OR51F1, OR52R1, OR51F2, OR51S1, OR51H1P, OR51T1, OR51A6P, OR51A7, OR51G2, OR51G1, V_6928, V_6939, V_6940, V_6941, V_6948, OR51A4, OR51A2, OR51L1, OR52J3, OR52E2, OR52A4, OR52A5, OR52A1, OR51V1, HBB, HBG1, HBG2, HBE1, V_6954, V_7952, V_8176, V_8192, V_8675, OR51B4, OR51B5, OR51B2, OR51B6, OR51M1, OR51J1, OR51Q1, OR51I1, OR51I2, OR52D1, UBQLN3, V_8676, V_8677, V_9172, V_9173, V_9174, UBQLNL, OR52H1, OR52B6, TRIM34, TRIM5, TRIM22, OR56B1, OR52N4, OR52N5, OR52N1, OR52N2, OR52E6, V_9649, V_9650, V_10344, V_22813, OR52E8, OR52E4, OR52E5, OR56A3, OR52L1, OR56A4, V_22895, V_23184, V_23215, V_23218, V_23399, V_23402, V_23404, V_23416, V_29435, V_29438, V_29453, V_29461, V_29472, V_29473
11 q12.1-q14.1 58536257 79690717 60% GLYATL2, GLYATL1, FAM111B, FAM111A, DTX4, MPEG1, OR5AN1, OR5A2, OR5A1, OR4D6, OR4D11, OR4D9, hsa-mir-611, hsa-mir-1908, hsa-mir-1237, hsa-mir-192, hsa-mir-194-2, hsa-mir-612, hsa- V_0149_LC13233_Iafrate et al. (2004), V_0150_LC13257_Iafrate et al. (2004), V_0151_LC13373_Iafrate et al. V_0149, V_0150, V_0151, V_0420, V_0421, OSBP, PATL1, OR10V1, STX3, MRPL16, GIF, TCN1, PLAC1L, MS4A3, MS4A2, MS4A6A, MS4A4E, MS4A4A, mir-548k, hsa-mir-139, hsa-mir-326, hsa-mir-708 (2004), V_0768_LC13233_Sharp et al. (2005), V_0777_LC13377_Sharp et al. (2005), V_2168_LC13233_Locke et V_0768, V_0777, V_0972, V_2168, V_2169, MS4A6E, MS4A7, MS4A14, MS4A5, MS4A1, MS4A12, MS4A13, MS4A8B, MS4A15, MS4A10, CCDC86, GPR44, al. (2006), V_2169_LC13288_Locke et al. (2006), V_2184_LC13377_Locke et al. (2006), V_4727_LC13373_Wong V_2184, V_2928, V_2929, V_2930, V_2931, ZP1, PRPF19, TMEM109, TMEM132A, SLC15A3, CD6, CD5, VPS37C, PGA3, PGA5, VWCE, DDB1, DAK, et al. (2007), V_4746_LC13237_Wong et al. (2007), V_4747_LC13245_Wong et al. (2007), V_2932, V_2933, V_2934, V_3853, V_3854, CYBASC3, TMEM138, TMEM216, CPSF7, C11orf79, C11orf66, DAGLA, C11orf9, C11orf10, FEN1, FADS1, FADS2, V_4748_LC13245_Wong et al. (2007), V_4749_LC13256_Wong et al. (2007), V_4750_LC13267_Wong et al. V_3855, V_3856, V_3857, V_3858, V_4727, FADS3, RAB3IL1, BEST1, FTH1, INCENP, SCGB1D1, SCGB2A1, SCGB1D2, SCGB2A2, SCGB1D4, ASRGL1, (2007), V_4751_LC13267_Wong et al. (2007), V_4752_LC13273_Wong et al. (2007), V_4753_LC13273_Wong et V_4746, V_4747, V_4748, V_4749, V_4750, SCGB1A1, AHNAK, TUT1, MTA2, EML3, ROM1, B3GAT3, GANAB, INTS5, C11orf48, METTL12, C11orf83, UBXN1, al. (2007), V_4754_LC13285_Wong et al. (2007), V_4755_LC13316_Wong et al. (2007), V_4756_LC13329_Wong V_4751, V_4752, V_4753, V_4754, V_4755, LRRN4CL, BSCL2, GNG3, HNRNPUL2, TTC9C, ZBTB3, POLR2G, TAF6L, TMEM179B, TMEM223, NXF1, STX5, et al. (2007) V_4756, V_5275, V_5276, V_5422, V_5423, WDR74, SLC3A2, CHRM1, SLC22A6, SLC22A8, SLC22A24, SLC22A25, SLC22A10, SLC22A9, HRASLS5, V_5630, V_5631, V_5632, V_5633, V_5634, LGALS12, RARRES3, HRASLS2, PLA2G16, ATL3, RTN3, C11orf84, MARK2, RCOR2, NAT11, COX8A, OTUB1, V_5635, V_5636, V_6927, V_6929, V_6930, MACROD1, FLRT1, FERMT3, TRPT1, NUDT22, DNAJC4, VEGFB, FKBP2, PPP1R14B, PLCB3, BAD, GPR137, V_6931, V_6932, V_6933, V_6934, V_6935, KCNK4, C11orf20, ESRRA, PRDX5, CCDC88B, RPS6KA4, SLC22A11, SLC22A12, NRXN2, RASGRP2, PYGM, V_6936, V_6937, V_6938, V_6942, V_6943, SF1, MAP4K2, MEN1, CDC42BPG, EHD1, ATG2A, PPP2R V_8161, V_8691, V_8692, V_9190, V_9664, V_9665, V_9666, V_9667, V_10362, V_10363, V_10364, V_10365, V_10366, V_10367, V_10368, V_10369, V_10370, V_22971, V_23228, V_23417, V_23418, V_23419, V_23420, V_23421, V_23422
12 p13.33-p12.3 147333 16596405 18% FAM138D, IQSEC3, SLC6A12, SLC6A13, KDM5A, CCDC77, B4GALNT3, NINJ2, WNK1, RAD52, ERC1, FBXL14, hsa-mir-200c, hsa-mir-141, hsa-mir-613, hsa-mir-614 V_0161_LC13778_Iafrate et al. (2004), V_4765_LC13757_Wong et al. (2007), V_4766_LC13773_Wong et al. V_0161, V_0310, V_0342, V_0424, V_0425, WNT5B, ADIPOR2, LRTM2, DCP1B, CACNA1C, FKBP4, ITFG2, NRIP2, FOXM1, C12orf32, TULP3, TEAD4, (2007), V_4768_LC13827_Wong et al. (2007), V_4769_LC13838_Wong et al. (2007) V_0426, V_1246, V_1247, V_1248, V_1493, TSPAN9, RPS27P23, PRMT8, EFCAB4B, PARP11, CCND2, C12orf5, FGF23, FGF6, RAD51AP1, DYRK4, AKAP3, V_1494, V_1495, V_1496, V_1497, V_1498, NDUFA9, GALNT8, KCNA6, KCNA1, KCNA5, NTF3, ANO2, VWF, CD9, PLEKHG6, TNFRSF1A, SCNN1A, LTBR, V_1891, V_1892, V_1893, V_1894, V_1895, CD27, TAPBPL, VAMP1, MRPL51, NCAPD2, GAPDH, IFFO1, NOP2, CHD4, LPAR5, ACRBP, ING4, ZNF384, V_2965, V_2966, V_2967, V_2968, V_2969, C12orf53, COPS7A, MLF2, PTMS, LAG3, CD4, GPR162, GNB3, CDCA3, USP5, TPI1, LRRC23, ENO2, ATN1, V_2970, V_2971, V_2972, V_3871, V_3872, C12orf57, PTPN6, PHB2, EMG1, LPCAT3, C1S, C1R, C1RL, RBP5, CLSTN3, PEX5, ACSM4, CD163L1, CD163, V_3873, V_3874, V_3875, V_3876, V_3877, APOBEC1, GDF3, DPPA3, CLEC4C, NANOG, SLC2A14, NANOGP1, SLC2A3, FOXJ2, C3AR1, NECAP1, CLEC4A, V_4765, V_4766, V_4768, V_4769, V_5298, ZNF705A, FAM90A1, CLEC6A, CLEC4D, CLEC4E, AICDA, MFAP5, A2ML1, PHC1, M6PR, KLRG1, C12orf33, A2M, V_5299, V_5300, V_5301, V_5302, V_5303, PZP, PTMAP4, DDX12, KLRB1, CLEC2D, CLECL1, CD69, KLRF1, CLEC2B, CLEC2A, CLEC12A, CLEC1B, V_5304, V_5305, V_5306, V_5653, V_5654, CLEC9A, CLEC1A, CLEC7A, OLR1, C12orf59, GABARAPL1, KLRD1, KLRC4, KLRC3, KLRC2, KLRK1, KLRA1, V_5655, V_5656, V_5657, V_5658, V_5659, MAGOHB, STYK1, CSDA, TAS2R7, TAS2R8, TAS2R9, TA V_5660, V_5661, V_6958, V_6959, V_6960, V_6962, V_6964, V_6969, V_6970, V_6971, V_6976, V_6978, V_6985, V_6996, V_7906, V_7981, V_8151, V_8191, V_8705, V_8706, V_8707, V_8708, V_8709, V_8710, V_8711, V_9201, V_9202, V_9203, V_9677, V_9678, V_9679, V_9680, V_9681, V_9682, V_9683, V_9684, V_9685, V_9686, V_10384, V_10385, V_10386, V_10387, V_10388, V_10389, V_10390, V_22595, V_22671, V_22705, V_22915, V_22928, V_23207, V_23225, V_23296, V_23437, V_23439, V_23442, V_23448, V_23450, V_23452, V_29397
12 p12.3 16815249 18666597 10% RERGL, PIK3C2G V_4770_LC13869_Wong et al. (2007) V_0427, V_1249, V_1250, V_1896, V_4770
12 p12.3-p11.21 19513931 32512880 14% PLEKHA5, AEBP2, PDE3A, SLCO1C1, SLCO1B3, SLCO1B1, SLCO1A2, IAPP, PYROXD1, RECQL, GOLT1B, hsa-mir-920 V_0162_LC13887_Iafrate et al. (2004), V_0163_LC13898_Iafrate et al. (2004), V_4772_LC13891_Wong et al. V_0162, V_0163, V_0335, V_1251, V_1252, C12orf39, GYS2, LDHB, KCNJ8, ABCC9, CMAS, ST8SIA1, KIAA0528, ETNK1, SOX5, C12orf67, BCAT1, LRMP, (2007), V_4773_LC13907_Wong et al. (2007) V_1253, V_1254, V_1499, V_1897, V_1898, CASC1, LYRM5, KRAS, IFLTD1, RASSF8, BHLHE41, SSPN, ITPR2, C12orf11, FGFR1OP2, TM7SF3, MED21, V_1899, V_1900, V_1901, V_1902, V_1903, C12orf71, STK38L, ARNTL2, C12orf70, PPFIBP1, REP15, MRPS35, KLHDC5, PTHLH, CCDC91, FAR2, ERGIC2, V_2973, V_2974, V_2975, V_2976, V_2977, OVCH1, TMTC1, IPO8, CAPRIN2, TSPAN11, DDX11, FAM60A, DENND5B, C12orf72, AMN1, BICD1 V_3878, V_3879, V_3880, V_3881, V_3882, V_3883, V_3884, V_4772, V_4773, V_5281, V_5282, V_5283, V_5284, V_5285, V_5286, V_5287, V_5288, V_5289, V_5290, V_5291, V_5292, V_5293, V_5294, V_5307, V_5662, V_5663, V_6972, V_6973, V_6974, V_6975, V_6977, V_6979, V_6980, V_6981, V_6982, V_6983, V_7811, V_8252, V_8712, V_8713, V_8714, V_8715, V_8716, V_8717, V_8718, V_8719, V_8720, V_8721, V_9687, V_9688, V_9689, V_9690, V_10391, V_10392, V_10393, V_22692, V_23061, V_23438, V_23440
12 p11.1-q12 33633228 40854223 14% ALG10, ALG10B, CPNE8, KIF21A, ABCD2, C12orf4, SLC2A13, LRRK2 V_2170_LC13972_Locke et al. (2006), V_4775_LC13974_Wong et al. (2007), V_4776_LC14002_Wong et al. (2007) V_0428, V_1257, V_1500, V_1906, V_1907, V_1908, V_2170, V_2978, V_2979, V_2980, V_2981, V_2982, V_3885, V_3886, V_4775, V_4776, V_5308, V_5309, V_5664, V_5665, V_8216, V_8232, V_8722, V_8723, V_8724, V_8725, V_8726, V_9204, V_9691, V_9692, V_9693, V_10395, V_10396, V_10397, V_22511, V_22865, V_23441
12 q12-q14.1 41968025 59392587 50% PDZRN4, GLT8D3, YAF2, ZCRB1, PPHLN1, PRICKLE1, ADAMTS20, PUS7L, IRAK4, TWF1, TMEM117, NELL2, hsa-mir-1293, hsa-mir-196a-2, hsa-mir-615, hsa-mir-148b, hsa-mir-1228, hsa-mir-616, V_0164_LC14085_Iafrate et al. (2004), V_4777_LC14039_Wong et al. (2007), V_4778_LC14057_Wong et al. V_0164, V_0429, V_0430, V_0431, V_1258, DBX2, PLEKHA9, ANO6, ARID2, SFRS2IP, SLC38A1, SLC38A2, SLC38A4, AMIGO2, FAM113B, RPAP3, hsa-mir-26a-2 (2007), V_4780_LC14080_Wong et al. (2007) V_1259, V_1260, V_1501, V_1502, V_1503, RAPGEF3, SLC48A1, HDAC7, VDR, TMEM106C, COL2A1, SENP1, PFKM, ASB8, C12orf68, OR10AD1, H1FNT, V_1504, V_1909, V_1910, V_1911, V_1912, ZNF641, ANP32D, C12orf54, OR8S1, LALBA, C12orf41, CCNT1, ADCY6, CACNB3, DDX23, RND1, CCDC65, V_1913, V_1914, V_1915, V_1916, V_2983, FKBP11, ARF3, WNT10B, WNT1, DDN, PRKAG1, MLL2, RHEBL1, DHH, LMBR1L, TUBA1B, TUBA1A, TUBA1C, V_2984, V_2985, V_3887, V_3888, V_3889, PRPH, TROAP, C1QL4, DNAJC22, SPATS2, KCNH3, MCRS1, FAM186B, PRPF40B, FMNL3, TMBIM6, KIAA1602, V_3890, V_3891, V_3892, V_4777, V_4778, BCDIN3D, FAIM2, AQP2, AQP5, AQP6, RACGAP1, ACCN2, SMARCD1, GPD1, C12orf62, LASS5, LIMA1, V_4780, V_5666, V_5667, V_5668, V_5669, FAM186A, LARP4, DIP2B, ATF1, METTL7A, HIGD1C, SLC11A2, LETMD1, CSRNP2, TFCP2, POU6F1, DAZAP2, V_6986, V_6987, V_6988, V_7920, V_8020, BIN2, CELA1, GALNT6, SLC4A8, SCN8A, FIGNL2, ANKRD33, ACVRL1, ACVR1B, GRASP, NR4A1, C12orf44, V_8193, V_8727, V_8728, V_8729, V_8730, KRT80, KRT7, KRT81, KRT86, KRT83, KRT85, KRT84, KRT82, KRT75, KRT6B, KRT6C, KRT6A, KRT5, KRT71, V_8731, V_9205, V_9206, V_9207, V_9694, KRT74, KRT72, KRT73, KRT2, KRT1, KRT77, KRT76, KRT3, KRT4, KRT79, KRT78, KRT8, KRT18, EIF4B, TENC1, V_9695, V_9696, V_22812, V_22835, SPRYD3, IGFBP6, SOAT2, CSAD, ZNF740, ITGB7, RARG V_22920, V_22994, V_23007, V_23195, V_23297, V_23444, V_23445, V_23446, V_23447
12 q14.2 64064776 64641464 10% TMEM5, SRGAP1, C12orf66 Supplementary Table 1 Page 6
12 q14.2-q21.1 65072919 72965827 14% RASSF3, GNS, TBC1D30, WIF1, LEMD3, MSRB3, HMGA2, LLPH, TMBIM4, IRAK3, HELB, GRIP1, CAND1, V_4781_LC14179_Wong et al. (2007) V_1505, V_1919, V_2989, V_2990, V_2991, DYRK2, IFNG, IL26, IL22, MDM1, RAP1B, NUP107, SLC35E3, MDM2, CPM, CPSF6, LYZ, YEATS4, FRS2, CCT2, V_2992, V_3894, V_3895, V_4781, V_5311, LRRC10, BEST3, RAB3IP, C12orf28, CNOT2, KCNMB4, PTPRB, PTPRR, TSPAN8, LGR5, ZFC3H1, THAP2, V_5673, V_5674, V_5675, V_5676, V_5677, TMEM19, RAB21, TBC1D15, TPH2, TRHDE V_6990, V_6991, V_7850, V_7975, V_8736, V_9209, V_9210, V_9698, V_10399, V_10400, V_10401, V_22516, V_22596, V_22913, V_22995, V_23451, V_29424
12 q23.1-q24.33 96727629 133778461 50% PCTK2, C12orf55, C12orf63, NEDD1, TMPO, SLC25A3, APAF1, ANKS1B, FAM71C, UHRF1BP1L, GOLGA2L1, hsa-mir-1251, hsa-mir-135a-2, hsa-mir-619, hsa-mir-1302-1, hsa-mir-620, hsa-mir-1178 V_0166_LC14429_Iafrate et al. (2004), V_0769_LC14595_Sharp et al. (2005), V_2172_LC14595_Locke et al. V_0166, V_0434, V_0435, V_0769, V_1267, ACTR6, DEPDC4, SCYL2, SLC17A8, NR1H4, GAS2L3, SLC5A8, UTP20, ARL1, SPIC, MYBPC1, CHPT1, SYCP3, (2006), V_4404_LC14595_Wong et al. (2007), V_4786_LC14380_Wong et al. (2007), V_4787_LC14460_Wong et V_1268, V_1269, V_1270, V_1271, V_1272, GNPTAB, CCDC53, NUP37, C12orf48, PMCH, IGF1, PAH, ASCL1, STAB2, NT5DC3, HSP90B1, C12orf73, TDG, al. (2007), V_4788_LC14466_Wong et al. (2007), V_4789_LC14468_Wong et al. (2007), V_4790_LC14504_Wong V_1273, V_1274, V_1506, V_1507, V_1508, GLT8D2, HCFC2, NFYB, CHST11, SLC41A2, C12orf45, ALDH1L2, KIAA1033, APPL2, NUAK1, CKAP4, TCP11L2, et al. (2007), V_4792_LC14514_Wong et al. (2007), V_4793_LC14538_Wong et al. (2007), V_1509, V_1928, V_1929, V_1930, V_1931, POLR3B, RFX4, RIC8B, C12orf23, MTERFD3, CRY1, BTBD11, PWP1, PRDM4, ASCL4, WSCD2, CMKLR1, FICD, V_4794_LC14556_Wong et al. (2007), V_4795_LC14556_Wong et al. (2007), V_4796_LC14595_Wong et al. (2007) V_1932, V_1933, V_1934, V_1935, V_1936, SART3, ISCU, TMEM119, SELPLG, CORO1C, SSH1, DAO, SVOP, USP30, ALKBH2, UNG, ACACB, FOXN4, V_1937, V_1938, V_1939, V_1940, V_1941, MYO1H, KCTD10, UBE3B, MMAB, MVK, C12orf34, TRPV4, GLTP, TCHP, GIT2, ANKRD13A, C12orf76, IFT81, V_2172, V_2996, V_2997, V_2998, V_2999, ATP2A2, ANAPC7, ARPC3, GPN3, C12orf24, VPS29, RAD9B, PPTC7, TCTN1, HVCN1, PPP1CC, CCDC63, MYL2, V_3000, V_3001, V_3002, V_3898, V_3899, CUX2, FAM109A, SH2B3, ATXN2, BRAP, ACAD10, ALDH2, MAPKAPK5, TMEM116, ERP29, C12orf30, TRAFD1, V_3900, V_3901, V_3902, V_3903, V_4404, C12orf51, RPL6, PTPN11, RPH3A, OAS1, OAS3, OAS2, DTX1, RASAL1, DDX54, C12orf52, IQCD, TPCN1, V_4786, V_4787, V_4788, V_4789, V_4790, SLC24A6, PLBD2, SDS, SDSL, LHX5, RBM19, TBX5, TBX3, MED13L, NCRNA00173, MAP1LC3B2, C12orf49, V_4792, V_4793, V_4794, V_4795, V_4796, RNFT2, HRK, FBXW8, TESC, FBXO21, NOS1, KSR2, RFC V_5312, V_5313, V_5425, V_5687, V_5688, V_5689, V_5690, V_5691, V_5692, V_5693, V_5694, V_5695, V_5696, V_5697, V_5698, V_5699, V_5700, V_6961, V_6963, V_6965, V_6966, V_6967, V_6968, V_6997, V_7963, V_7970, V_7982, V_8096, V_8162, V_8189, V_8238, V_8248, V_8737, V_8738, V_8739, V_8740, V_8741, V_8742, V_9213, V_9699, V_9700, V_9701, V_9702, V_9703, V_9704, V_9705, V_10404, V_10405, V_10406, V_10407, V_10408, V_10409, V_10410, V_22644, V_22732, V_23043, V_23299, V_23431, V_23432, V_23433, V_23434, V_23435, V_23436, V_29488
13 q34 111921298 115074090 14% ARHGEF7, C13orf16, SOX1, C13orf28, TUBGCP3, C13orf35, ATP11A, MCF2L, F7, F10, PROZ, PCID2, CUL4A, V_4819_LC15248_Wong et al. (2007), V_4820_LC15248_Wong et al. (2007) V_1950, V_3927, V_3928, V_4819, V_4820, LAMP1, GRTP1, ADPRHL1, DCUN1D2, TMCO3, TFDP1, ATP4B, GRK1, FAM70B, GAS6, RASA3, CDC16, UPF3A V_5725, V_7000, V_8270, V_9723, V_23301, V_23457, V_23458
14 q11.2 19968167 20414445 20% OR11H2, OR4Q3, OR4H12P, OR4M1, OR4N2, OR4K2, OR4K5, OR4K1 V_3930, V_8183, V_9726
14 q23.1-q31.1 60455074 80483426 24% LRRC9, C14orf135, DHRS7, PPM1A, C14orf39, SIX6, SIX1, SIX4, MNAT1, TRMT5, SLC38A6, TMEM30B, PRKCH, hsa-mir-548h-1, hsa-mir-625, hsa-mir-1260 V_4838_LC15719_Wong et al. (2007), V_4839_LC15767_Wong et al. (2007), V_4840_LC15786_Wong et al. (2007) V_0440, V_1953, V_1954, V_3053, V_3054, HIF1A, SNAPC1, SYT16, KCNH5, RHOJ, GPHB5, PPP2R5E, RPL31P5, WDR89, SGPP1, SYNE2, ESR2, V_3055, V_3056, V_3057, V_3058, V_3059, MTHFD1, AKAP5, ZBTB25, ZBTB1, HSPA2, C14orf50, PLEKHG3, SPTB, FNTB, GPX2, RAB15, MAX, RPL21P7, V_3060, V_3942, V_3943, V_3944, V_4838, FUT8, GPHN, FAM71D, MPP5, ATP6V1D, EIF2S1, PLEK2, C14orf83, PLEKHH1, PIGH, ARG2, VTI1B, RDH11, V_4839, V_4840, V_5431, V_5748, V_5749, RDH12, ZFYVE26, RAD51L1, ZFP36L1, C14orf181, ACTN1, WDR22, EXD2, GALNTL1, ERH, SLC39A9, V_5750, V_5751, V_5752, V_5753, V_5754, C14orf162, KIAA0247, SFRS5, SLC10A1, SMOC1, SLC8A3, COX16, SYNJ2BP, ADAM21, ADAM20, MED6, TTC9, V_5755, V_7038, V_7039, V_7040, V_7041, MAP3K9, PCNX, C14orf56, SIPA1L1, RGS6, C14orf57, DPF3, WDR21A, ZFYVE1, RBM25, PSEN1, PAPLN, V_7042, V_7914, V_7940, V_8770, V_8771, NUMB, HEATR4, ACOT1, ACOT2, ACOT4, ACOT6, DNAL1, PNMA1, C14orf43, PTGR2, ZNF410, FAM161B, V_8772, V_8773, V_9245, V_9246, V_9730, COQ6, ENTPD5, C14orf45, ALDH6A1, LIN52, VSX2, ABCD4, C14orf115, TMEM90A, NPC2, ISCA2, LTBP2, V_9731, V_10448, V_22908, V_23304, KIAA0317, FCF1, YLPM1, PROX2, DLST, RPS6KL1, PGF, EIF2B2, MLH3, ACYP1, FAM164C, NEK9, TMED10, V_23486, V_23487, V_23488 FOS, JDP2, BATF, FLVCR2, C14orf1, TTLL5, TGFB3, C14orf179, C14orf118, ESRRB, VASH1, ANGEL1, C14orf166B, C14orf4, KIAA1737, ZDHHC22, TMEM63C, NGB, POMT2, GSTZ1, TMED8, C14orf174, C14orf148, C14orf133, AHSA1, ISM2, SPTLC2, ALKBH1, C14orf156, S
14 q32.11-q32.33 90010956 107246329 26% C14orf143, TDP1, KCNK13, PSMC1, C14orf102, CALM1, TTC7B, RPS6KA5, C14orf159, GPR68, CCDC88C, hsa-mir-342, hsa-mir-345, hsa-mir-770, hsa-mir-493, hsa-mir-337, hsa-mir-665, hsa-mir- V_0180_LC16001_Iafrate et al. (2004), V_0182_LC16055_Iafrate et al. (2004), V_0770_LC16055_Sharp et al. V_0180, V_0182, V_0317, V_0341, V_0377, SMEK1, CATSPERB, TC2N, FBLN5, TRIP11, ATXN3, NDUFB1, CPSF2, SLC24A4, RIN3, LGMN, GOLGA5, CHGA, 431, hsa-mir-433, hsa-mir-127, hsa-mir-432, hsa-mir-136, hsa-mir-370, hsa-mir-379, hsa- (2005), V_0771_LC16055_Sharp et al. (2005), V_0772_LC16055_Sharp et al. (2005), V_0773_LC16055_Sharp et V_0441, V_0770, V_0771, V_0772, V_0773, ITPK1, MOAP1, C14orf109, C14orf142, UBR7, BTBD7, KIAA1409, COX8C, PRIMA1, FAM181A, ASB2, C14orf48, mir-411, hsa-mir-299, hsa-mir-380, hsa-mir-1197, hsa-mir-323, hsa-mir-758, hsa-mir-329- al. (2005), V_0774_LC16055_Sharp et al. (2005), V_2176_LC16055_Locke et al. (2006), V_2177_LC16055_Locke V_0774, V_1955, V_1956, V_2176, V_2177, OTUB2, DDX24, IFI27L1, IFI27, IFI27L2, PPP4R4, SERPINA10, SERPINA6, SERPINA2, SERPINA1, SERPINA11, 1, hsa-mir-329-2, hsa-mir-494, hsa-mir-543, hsa-mir-495, hsa-mir-376c, hsa-mir-654, et al. (2006), V_2178_LC16055_Locke et al. (2006), V_2179_LC16055_Locke et al. (2006), V_2178, V_2179, V_3065, V_3066, V_3067, SERPINA9, SERPINA12, SERPINA4, SERPINA5, SERPINA3, SERPINA13, GSC, DICER1, CLMN, C14orf49, hsa-mir-300, hsa-mir-1185-1, hsa-mir-1185-2, hsa-mir-381, hsa-mir-487b, hsa-mir-539, V_4845_LC15928_Wong et al. (2007), V_4846_LC15993_Wong et al. (2007), V_4847_LC16001_Wong et al. V_3068, V_3069, V_3949, V_3950, V_4845, GLRX5, TCL6, TCL1B, TCL1A, C14orf132, BDKRB2, BDKRB1, ATG2B, C14orf129, AK7, PAPOLA, VRK1, hsa-mir-889, hsa-mir-544, hsa-mir-655, hsa-mir-487a, hsa-mir-382, hsa-mir-134, hsa-mir- (2007), V_4848_LC16001_Wong et al. (2007), V_4849_LC16055_Wong et al. (2007), V_4850_LC16055_Wong et V_4846, V_4847, V_4848, V_4849, V_4850, C14orf177, BCL11B, SETD3, CCNK, C14orf65, CCDC85C, HHIPL1, CYP46A1, EML1, EVL, DEGS2, YY1, 668, hsa-mir-485, hsa-mir-453, hsa-mir-154, hsa-mir-496, hsa-mir-377, hsa-mir-541, hsa- al. (2007), V_4851_LC16055_Wong et al. (2007), V_4852_LC16055_Wong et al. (2007), V_4853_LC16055_Wong V_4851, V_4852, V_4853, V_4854, V_4855, SLC25A29, C14orf68, WARS, WDR25, BEGAIN, C14orf70, DLK1, DIO3, PPP2R5C, DYNC1H1, HSP90AA1, mir-409, hsa-mir-412, hsa-mir-369, hsa-mir-410, hsa-mir-656, hsa-mir-1247, hsa-mir-203 et al. (2007), V_4854_LC16055_Wong et al. (2007), V_4855_LC16055_Wong et al. (2007), V_4856, V_4857, V_4858, V_4859, V_4860, WDR20, RAGE, ZNF839, TECPR2, ANKRD9, RCOR1, TRAF3, AMN, CDC42BPB, C14orf73, TNFAIP2, EIF5, V_4856_LC16055_Wong et al. (2007), V_4857_LC16055_Wong et al. (2007), V_4858_LC16055_Wong et al. V_5322, V_5765, V_5766, V_5767, V_5768, MARK3, CKB, TRMT61A, BAG5, C14orf153, XRCC3, ZFYVE21, PPP1R13B, C14orf2, TDRD9, ASPG, KIF26A, (2007), V_4859_LC16055_Wong et al. (2007), V_4860_LC16055_Wong et al. (2007), V_0377_LC16055_Bejjani et V_5769, V_5770, V_5771, V_7023, V_7024, C14orf144, C14orf180, TMEM179, INF2, ADSSL1, SIVA1, AKT1, ZBTB42, RPS2P4, PLD4, AHNAK2, C14orf79, al. (2005) V_7025, V_7026, V_7027, V_7043, V_7846, CDCA4, GPR132, JAG2, NUDT14, BRF1, BTBD6, PACS2 V_8060, V_8257, V_8287, V_8775, V_8776, V_8777, V_8778, V_9732, V_9733, V_9734, V_9735, V_9736, V_9737, V_9738, V_9739, V_9740, V_10450, V_10451, V_10452, V_10453, V_10454, V_10455, V_10456, V_10457, V_10458, V_10459, V_10460, V_10461, V_10462, V_22695, V_22914, V_22946, V_22947, V_22950, V_22954, V_23196, V_23229, V_23230, V_23241, V_23242, V_23306, V_23307, V_23308, V_23309, V_23479, V_23480, V_23481, V_23492
15 q11.2 20013225 22595193 20% VSIG7, BCL8, OR11K1P, OR4M2, OR4N4, VSIG6 hsa-mir-1268 V_2183_LC16090_Locke et al. (2006), V_4873_LC16090_Wong et al. (2007), V_4874_LC16090_Wong et al. V_0318, V_0352, V_0443, V_0444, V_1281, (2007), V_4875_LC16090_Wong et al. (2007), V_4877_LC16090_Wong et al. (2007), V_4878_LC16090_Wong et V_1958, V_2183, V_3070, V_3071, V_3072, al. (2007), V_4879_LC16090_Wong et al. (2007), V_4880_LC16090_Wong et al. (2007), V_4881_LC16090_Wong V_3951, V_3952, V_4873, V_4874, V_4875, et al. (2007) V_4877, V_4878, V_4879, V_4880, V_4881, V_5772, V_5773, V_7046, V_7047, V_7048, V_7049, V_7050, V_8133, V_8265, V_8284, V_8779, V_8781, V_8782, V_8783, V_8784, V_8785, V_8786, V_8787, V_8788, V_8789, V_8790, V_8791, V_8792, V_8793, V_9249, V_9250, V_9251, V_9252, V_9254, V_9256, V_9257, V_9258, V_9259, V_9260, V_10465, V_10466, V_10467, V_10468, V_10469, V_22930, V_22941, V_23494
15 q21.3-q25.2 57496413 84006571 24% TCF12, CGNL1, GRINL1A, ALDH1A2, AQP9, LIPC, ADAM10, HSP90AB4P, FAM63B, SLTM, RNF111, CCNB2, hsa-mir-190, hsa-mir-422a, hsa-mir-1272, hsa-mir-629, hsa-mir-630, hsa-mir-631, hsa- V_0189_LC16389_Iafrate et al. (2004), V_0190_LC16450_Iafrate et al. (2004), V_0786_LC16331_Sharp et al. V_0189, V_0190, V_0356, V_0457, V_0458, MYO1E, C15orf31, LDHAL6B, FAM81A, GCNT3, GTF2A2, BNIP2, FOXB1, ANXA2, NARG2, RORA, VPS13C, mir-1827, hsa-mir-184, hsa-mir-549 (2005), V_0787_LC16438_Sharp et al. (2005), V_0788_LC16450_Sharp et al. (2005), V_0789_LC16450_Sharp et V_0459, V_0460, V_0786, V_0787, V_0788, FAM148A, FAM148B, TLN2, TPM1, LACTB, RPS27L, RAB8B, APH1B, CA12, USP3, FBXL22, HERC1, DAPK2, al. (2005), V_0790_LC16456_Sharp et al. (2005), V_0791_LC16456_Sharp et al. (2005), V_0792_LC16456_Sharp V_0789, V_0790, V_0791, V_0792, V_2194, FAM96A, SNX1, SNX22, PPIB, CSNK1G1, KIAA0101, TRIP4, ZNF609, RBPMS2, PIF1, ANKDD1A, SPG21, et al. (2005), V_2194_LC16374_Locke et al. (2006), V_2195_LC16389_Locke et al. (2006), V_2195, V_2196, V_2197, V_2198, V_2199, MTFMT, RASL12, PDCD7, CLPX, CILP, PARP16, IGDCC3, IGDCC4, DPP8, PTPLAD1, C15orf44, SLC24A1, V_2196_LC16398_Locke et al. (2006), V_2197_LC16450_Locke et al. (2006), V_2198_LC16456_Locke et al. V_2200, V_3084, V_3085, V_3086, V_3087, DENND4A, RAB11A, MEGF11, DIS3L, TIPIN, MAP2K1, SNAPC5, RPL4, ZWILCH, LCTL, SMAD6, SMAD3, IQCH, (2006), V_2199_LC16456_Locke et al. (2006), V_2200_LC16456_Locke et al. (2006), V_4904_LC16360_Wong et V_3088, V_3089, V_3090, V_3964, V_3965, C15orf61, MAP2K5, LBXCOR1, PIAS1, CALML4, CLN6, FEM1B, ITGA11, CORO2B, ANP32A, NOX5, SPESP1, al. (2007), V_4905_LC16412_Wong et al. (2007), V_4906_LC16417_Wong et al. (2007), V_4907_LC16456_Wong V_3966, V_3967, V_3968, V_3969, V_3970, GLCE, PAQR5, KIF23, RPLP1, TLE3, UACA, LARP6, THAP10, LRRC49, THSD4, MYO9A, SENP8, GRAMD2, et al. (2007) V_3971, V_3972, V_3973, V_3974, V_3975, PKM2, PARP6, BRUNOL6, HEXA, C15orf34, TMEM202, ARIH1, HIGD2B, BBS4, ADPGK, NEO1, HCN4, C15orf60, V_4904, V_4905, V_4906, V_4907, V_5326, NPTN, CD276, C15orf59, TBC1D21, LOXL1, STOML1, PML, DNM1P33, GOLGA6, ISLR2, ISLR, STRA6, CCDC33, V_5433, V_5787, V_5788, V_5789, V_5790, CYP11A1, SEMA7A, UBL7, ARID3B, CLK3, EDC3, CYP1A1, CYP1A2, CSK, LMAN1L, CPLX3, ULK3, SCAMP2, V_5791, V_5792, V_5793, V_5794, V_5795, MPI, C15orf17, COX5A, RPP25, SCAMP5, PPCDC, C15or V_5796, V_5797, V_5798, V_5799, V_5800, V_7068, V_7069, V_7070, V_7071, V_7072, V_7073, V_7074, V_7075, V_7076, V_7077, V_8217, V_8800, V_8801, V_8802, V_9266, V_9746, V_9747, V_9748, V_9749, V_9750, V_10486, V_10487, V_10488, V_10489, V_22783, V_23120, V_23498, V_23499, V_23500, V_23501, V_23502
15 q25.2-q25.3 84682070 86328556 12% ADAMTSL3, ZSCAN2, SCAND2, NMB, SEC11A, ZNF592, ALPK3, SLC28A1, PDE8A, AKAP13, KLHL25 hsa-mir-1276 V_4908_LC16467_Wong et al. (2007) V_3092, V_3093, V_4908, V_5802, V_9267, V_9751
15 q26.2-q26.3 97000628 102424366 24% FAM149B2, SPATA8, ARRDC4, FAM169B, IGF1R, SYNM, TTC23, LRRC28, HSP90B2P, MEF2A, LYSMD4, V_0193_LC16579_Iafrate et al. (2004), V_2201_LC16579_Locke et al. (2006), V_2202_LC16579_Locke et al. V_0193, V_0475, V_2201, V_2202, V_3098, C15orf51, ADAMTS17, LASS3, LINS1, ASB7, ALDH1A3, LRRK1, CHSY1, SNRPA1, PCSK6, TM2D3, TARSL2, (2006) V_3099, V_3981, V_3982, V_3983, V_3984, OR4F6, OR4F15 V_3985, V_5327, V_7084, V_7085, V_7086, V_7087, V_8222, V_8806, V_8807, V_8808, V_8809, V_9754, V_23504, V_23505, V_23506 Supplementary Table 1 Page 7
16 p13.3-p11.1 290694 33675567 46% ITFG3, RGS11, PDIA2, AXIN1, MRPL28, TMEM8, NME4, RAB11FIP3, SOLH, C16orf11, PIGQ, RAB40C, hsa-mir-662, hsa-mir-1225, hsa-mir-940, hsa-mir-548h-2, hsa-mir-193b, hsa-mir-365-1, V_0195_LC16821_Iafrate et al. (2004), V_0793_LC16761_Sharp et al. (2005), V_0794_LC16821_Sharp et al. V_0195, V_0323, V_0324, V_0358, V_0368, WFIKKN1, C16orf13, C16orf14, WDR90, RHOT2, RHBDL1, STUB1, WDR24, FBXL16, METRN, FAM173A, hsa-mir-1972, hsa-mir-484 (2005), V_0795_LC16821_Sharp et al. (2005), V_0796_LC16821_Sharp et al. (2005), V_2203_LC16733_Locke et V_0369, V_0476, V_0477, V_0478, V_0479, CCDC78, HAGHL, NARFL, MSLN, MSLNL, RPUSD1, CHTF18, GNG13, LMF1, SOX8, SSTR5, C1QTNF8, al. (2006), V_2204_LC16736_Locke et al. (2006), V_2205_LC16736_Locke et al. (2006), V_2206_LC16761_Locke V_0480, V_0481, V_0482, V_0483, V_0793, CACNA1H, TPSG1, TPSB2, TPSAB1, TPSD1, PRSS29P, UBE2I, BAIAP3, C16orf42, GNPTG, UNKL, C16orf91, et al. (2006), V_2207_LC16761_Locke et al. (2006), V_2208_LC16802_Locke et al. (2006), V_0794, V_0795, V_0796, V_0971, V_1283, CCDC154, CLCN7, C16orf38, TELO2, IFT140, TMEM204, CRAMP1L, HN1L, MAPK8IP3, NME3, MRPS34, EME2, V_2209_LC16817_Locke et al. (2006), V_2210_LC16821_Locke et al. (2006), V_2211_LC16821_Locke et al. V_1284, V_1285, V_2203, V_2204, V_2205, SPSB3, NUBP2, IGFALS, HAGH, FAHD1, C16orf73, HS3ST6, SEPX1, RPL3L, NDUFB10, RPS2, RNF151, TBL3, (2006), V_2212_LC16821_Locke et al. (2006), V_2213_LC16821_Locke et al. (2006), V_2214_LC16821_Locke et V_2206, V_2207, V_2208, V_2209, V_2210, NOXO1, GFER, SYNGR3, ZNF598, NPW, NTHL1, TSC2, PKD1, RAB26, TRAF7, CASKIN1, C16orf79, PGP, E4F1, al. (2006), V_2215_LC16821_Locke et al. (2006), V_4440_LC16821_Wong et al. (2007), V_4779_LC16593_Wong V_2211, V_2212, V_2213, V_2214, V_2215, DNASE1L2, DCI, RNPS1, ABCA3, ABCA17P, CCNF, C16orf59, NTN3, TBC1D24, ATP6V0C, AMDHD2, CEMP1, et al. (2007), V_4912_LC16593_Wong et al. (2007), V_4913_LC16593_Wong et al. (2007), V_3100, V_3101, V_3102, V_3103, V_3104, PDPK1, KCTD5, PRSS27, SRRM2, TCEB2, PRSS33, PRSS21, ZG16B, PRSS22, FLYWCH2, FLYWCH1, V_4914_LC16593_Wong et al. (2007), V_4915_LC16593_Wong et al. (2007), V_4916_LC16593_Wong et al. V_3105, V_3106, V_3107, V_3108, V_3109, KREMEN2, PKMYT1, PAQR4, CLDN9, CLDN6, TNFRSF12A, HCFC1R1, THOC6, CCDC64B, MMP25, IL32, (2007), V_4917_LC16593_Wong et al. (2007), V_4918_LC16593_Wong et al. (2007), V_4919_LC16593_Wong et V_3110, V_3111, V_3112, V_3113, V_3114, ZSCAN10, ZNF205, ZNF213, OR1F1, ZNF200, MEFV, ZNF263, TIGD7, ZNF75A, OR2C1, ZNF434, ZNF174, al. (2007), V_4920_LC16652_Wong et al. (2007), V_4921_LC16658_Wong et al. (2007), V_4922_LC16660_Wong V_3115, V_3116, V_3117, V_3987, V_3988, ZNF597, NAT15, C16orf90, CLUAP1, NLRC3, BTBD12, DNASE1, TRAP1, CREBBP, ADCY9, SRL, TFAP4, GLIS2, et al. (2007), V_4923_LC16730_Wong et al. (2007), V_492 V_3989, V_3990, V_3991, V_3992, V_3993, CORO7, VASN, DNAJA3, NMRAL1, HMOX2, C16orf5, FAM V_3994, V_3995, V_3996, V_3997, V_3998, V_3999, V_4000, V_4001, V_4002, V_4440, V_4779, V_4912, V_4913, V_4914, V_4915, V_4916, V_4917, V_4918, V_4919, V_4920, V_4921, V_4922, V_4923, V_4924, V_4925, V_4926, V_4927, V_4928, V_4929, V_4930, V_4931, V_4932, V_4933, V_4934, V_4935, V_4936, V_4937, V_4938, V_4939, V_4940, V_4941, V_4942, V_4943, V_4944, V_4945, V_4946, V_4947, V_4948, V_5328, V_5329, V_5434, V_5435, V_5436, V_5810, V_5811, V_5812, V_5813, V_5814, V_5815, V_5816, V_5817, V_5818, V_5819, V_5820, V_5821, V_7088, V_7089, V_7090, V_7091, V_7092, V_7093, V_7094, V_70
16 p11.1 33752616 34019334 10% V_4949_LC16821_Wong et al. (2007), V_4950_LC16821_Wong et al. (2007) V_4002, V_4949, V_4950, V_7105, V_7106, V_8273, V_8825, V_22494, V_22844, V_23509, V_23510
16 q21-q23.1 64650459 75733006 22% CDH11, CDH5, TK2, CKLF, CMTM1, CMTM2, CMTM3, CMTM4, DYNC1LI2, CCDC79, NAE1, CA7, CDH16, RRAD, hsa-mir-328, hsa-mir-1538, hsa-mir-140, hsa-mir-1972 V_0678_LC16967_Sharp et al. (2005), V_0797_LC16959_Sharp et al. (2005), V_2043_LC16967_Locke et al. V_0357, V_0489, V_0678, V_0797, V_2043, CES2, CES3, CES8, CBFB, C16orf70, B3GNT9, TRADD, FBXL8, HSF4, NOL3, EXOC3L, E2F4, ELMO3, LRRC29, (2006), V_2216_LC16959_Locke et al. (2006), V_4962_LC16939_Wong et al. (2007), V_4963_LC16959_Wong et V_2216, V_3123, V_3124, V_3125, V_3126, TMEM208, FHOD1, SLC9A5, PLEKHG4, KCTD19, LRRC36, TPPP3, ZDHHC1, HSD11B2, ATP6V0D1, AGRP, al. (2007), V_4964_LC16959_Wong et al. (2007), V_4965_LC16963_Wong et al. (2007), V_4966_LC16982_Wong V_3127, V_4009, V_4010, V_4011, V_4012, FAM65A, CTCF, RLTPR, ACD, PARD6A, C16orf48, C16orf86, GFOD2, RANBP10, TSNAXIP1, CENPT, THAP11, et al. (2007), V_4967_LC16985_Wong et al. (2007) V_4013, V_4962, V_4963, V_4964, V_4965, NUTF2, EDC4, NRN1L, PSKH1, CTRL, PSMB10, LCAT, SLC12A4, DPEP3, DPEP2, DDX28, DUS2L, NFATC3, V_4966, V_4967, V_5330, V_5438, V_5831, ESRP2, PLA2G15, SLC7A6, SLC7A6OS, PRMT7, SMPD3, ZFP90, CDH3, CDH1, TMCO7, HAS3, CHTF8, CIRH1A, V_5832, V_5833, V_5834, V_5835, V_5836, SNTB2, VPS4A, PDF, COG8, NIP7, TMED6, TERF2, CYB5B, NFAT5, NQO1, NOB1, WWP2, CLEC18A, PDXDC2, V_5837, V_5838, V_7124, V_7125, V_7127, PDPR, CLEC18C, EXOSC6, AARS, DDX19B, DDX19A, ST3GAL2, FUK, COG4, SF3B3, IL34, MTSS1L, VAC14, V_7128, V_7129, V_7832, V_7869, V_7934, HYDIN, FTSJD1, CALB2, ZNF23, ZNF19, CHST4, TAT, MARVELD3, PHLPPL, AP1G1, ATXN1L, ZNF821, V_8184, V_8828, V_9279, V_9280, V_9761, KIAA0174, PKD1L3, DHODH, HPR, TXNL4B, DHX38, PMFBP1, ZFHX3, C16orf47, PSMD7, NPIPL2, CLEC18B, V_9762, V_9763, V_10506, V_10507, GLG1, RFWD3, MLKL, FA2H, WDR59, ZNRF1, LDHD, ZFP1, CTRB2, CTRB1, BCAR1, CFDP1, TMEM170A, V_23314, V_23315, V_23513, V_23514, CHST6, CHST5, GABARAPL2, ADAT1, KARS, TERF2IP V_29454, V_29455
16 q23.1 77993535 78367990 10% VAT1L, CLEC3A, WWOX 16 q23.1-q23.2 78915869 79392394 10% WWOX V_4968_LC17023_Wong et al. (2007) V_4968, V_7133, V_9283
16 q23.2-q23.3 81275423 81836485 10% BCMO1, GAN, PLCG2 V_8831 16 q23.3-q24.3 82118862 90044587 64% HSD17B2, MPHOSPH6, CDH13, HSBP1, MLYCD, OSGIN1, NECAB2, SLC38A8, MBTPS1, HSDL1, LRRC50, hsa-mir-1910 V_0199_LC17071_Iafrate et al. (2004), V_0200_LC17076_Iafrate et al. (2004), V_4970_LC17076_Wong et al. V_0199, V_0200, V_0491, V_0492, V_0840, TAF1C, ADAD2, KCNG4, WFDC1, ATP2C2, KIAA1609, COTL1, KLHL36, USP10, CRISPLD2, ZDHHC7, KIAA0513, (2007), V_4971_LC17076_Wong et al. (2007), V_4972_LC17076_Wong et al. (2007), V_4973_LC17076_Wong et V_3132, V_3133, V_3134, V_3135, V_4015, FAM92B, KIAA0182, GINS2, C16orf74, COX4NB, COX4I1, IRF8, FOXF1, MTHFSD, FOXC2, FOXL1, FBXO31, al. (2007), V_4974_LC17076_Wong et al. (2007), V_4975_LC17076_Wong et al. (2007), V_4976_LC17076_Wong V_4016, V_4017, V_4018, V_4019, V_4970, MAP1LC3B, ZCCHC14, JPH3, KLHDC4, SLC7A5, CA5A, BANP, ZNF469, ZFPM1, C16orf85, ZC3H18, IL17C, et al. (2007), V_4977_LC17076_Wong et al. (2007), V_4978_LC17076_Wong et al. (2007) V_4971, V_4972, V_4973, V_4974, V_4975, CYBA, MVD, SNAI3, RNF166, C16orf84, FAM38A, CDT1, APRT, GALNS, TRAPPC2L, CBFA2T3, ACSF3, CDH15, V_4976, V_4977, V_4978, V_5843, V_5844, ZNF778, ANKRD11, SPG7, RPL13, CPNE7, DPEP1, CHMP1A, C16orf55, CDK10, SPATA2L, C16orf7, ZNF276, V_5845, V_7134, V_7135, V_7136, V_7137, FANCA, SPIRE2, TCF25, TUBB3, DEF8 V_7138, V_7139, V_7140, V_8194, V_8283, V_10510, V_22618, V_23516, V_29410
17 p13.3-q25.3 53192 80910664 86% RPH3AL, C17orf97, FAM101B, VPS53, FAM57A, GEMIN4, GLOD4, RNMTL1, NXN, TIMM22, ABR, BHLHA9, hsa-mir-22, hsa-mir-132, hsa-mir-212, hsa-mir-1253, hsa-mir-195, hsa-mir-497, hsa-mir- V_0205_LC17492_Iafrate et al. (2004), V_0206_LC17502_Iafrate et al. (2004), V_0207_LC17522_Iafrate et al. V_0205, V_0206, V_0207, V_0208, V_0209, TUSC5, YWHAE, CRK, MYO1C, INPP5K, PITPNA, SLC43A2, SCARF1, RILP, PRPF8, TLCD2, WDR81, 324, hsa-mir-744, hsa-mir-548h-3, hsa-mir-1288, hsa-mir-33b, hsa-mir-1180, hsa-mir- (2004), V_0208_LC17538_Iafrate et al. (2004), V_0209_LC17565_Iafrate et al. (2004), V_0210_LC17626_Iafrate et V_0210, V_0211, V_0212, V_0213, V_0326, SERPINF2, SERPINF1, SMYD4, RPA1, RTN4RL1, DPH1, HIC1, SMG6, SRR, TSR1, SGSM2, MNT, METT10D, 451, hsa-mir-144, hsa-mir-423, hsa-mir-193a, hsa-mir-365-2, hsa-mir-632, hsa-mir-152, al. (2004), V_0211_LC17666_Iafrate et al. (2004), V_0212_LC17741_Iafrate et al. (2004), V_0213_LC17753_Iafrate V_0327, V_0328, V_0339, V_0366, V_0367, PAFAH1B1, KIAA0664, GARNL4, OR1D4, OR1D2, OR1G1, OR1A2, OR1A1, OR3A2, OR3A1, OR1E1, OR3A3, hsa-mir-1203, hsa-mir-10a, hsa-mir-196a-1, hsa-mir-142, hsa-mir-454, hsa-mir-301a, et al. (2004), V_0798_LC17354_Sharp et al. (2005), V_0799_LC17457_Sharp et al. (2005), V_0493, V_0494, V_0495, V_0496, V_0497, OR1E2, SPATA22, ASPA, TRPV3, SHPK, CTNS, TAX1BP3, TMEM93, P2RX5, ITGAE, GSG2, C17orf85, CAMKK1, hsa-mir-21, hsa-mir-633, hsa-mir-634, hsa-mir-548d-2, hsa-mir-635, hsa-mir-636, hsa- V_0800_LC17457_Sharp et al. (2005), V_0801_LC17522_Sharp et al. (2005), V_0802_LC17522_Sharp et al. V_0498, V_0499, V_0500, V_0501, V_0502, P2RX1, ATP2A3, ZZEF1, CYB5D2, ANKFY1, SPNS3, SPNS2, MYBBP1A, GGT6, SMTNL2, ALOX15, PELP1, mir-657, hsa-mir-338, hsa-mir-1250 (2005), V_0803_LC17522_Sharp et al. (2005), V_0804_LC17530_Sharp et al. (2005), V_0805_LC17601_Sharp et V_0503, V_0504, V_0505, V_0798, V_0799, ARRB2, MED11, CXCL16, ZMYND15, TM4SF5, VMO1, GLTPD2, PSMB6, PLD2, MINK1, CHRNE, GP1BA, al. (2005), V_0806_LC17642_Sharp et al. (2005), V_0807_LC17750_Sharp et al. (2005), V_2217_LC17259_Locke V_0800, V_0801, V_0802, V_0803, V_0804, SLC25A11, RNF167, PFN1, ENO3, SPAG7, CAMTA2, INCA1, KIF1C, GPR172B, ZFP3, ZNF232, USP6, ZNF594, et al. (2006), V_2218_LC17354_Locke et al. (2006), V_2219_LC17388_Locke et al. (2006), V_0805, V_0806, V_0807, V_1287, V_1288, C17orf87, RABEP1, NUP88, RPAIN, C1QBP, DHX33, DERL2, MIS12, NLRP1, WSCD1, AIPL1, FAM64A, PITPNM3, V_2220_LC17457_Locke et al. (2006), V_2221_LC17457_Locke et al. (2006), V_2222_LC17457_Locke et al. V_1962, V_1963, V_1964, V_2217, V_2218, KIAA0753, TXNDC17, MED31, C17orf100, SLC13A5, XAF1, FBXO39, TEKT1, ALOX12, RNASEK, C17orf49, (2006), V_2223_LC17457_Locke et al. (2006), V_2224_LC17457_Locke et al. (2006), V_2225_LC17522_Locke et V_2219, V_2220, V_2221, V_2222, V_2223, BCL6B, SLC16A13, SLC16A11, CLEC10A, ASGR2, ASGR1, DLG4, ACADVL, DVL2, PHF23, GABARAP, al. (2006), V_2226_LC17522_Locke et al. (2006), V_2227_LC17522_Locke et al. (2006), V_2228_LC17522_Locke V_2224, V_2225, V_2226, V_2227, V_2228, DULLARD, C17orf81, CLDN7, SLC2A4, YBX2, EIF5A, GPS2, NEURL4, ACAP1, KCTD11, TMEM95, TNK1, et al. (2006), V_2229_LC17530_Locke et al. (2006), V_223 V_2229, V_2230, V_2231, V_2232, V_2233, PLSCR3, C17orf61, NLGN2, SPEM1, C17orf74, TMEM102 V_2234, V_2235, V_3136, V_3137, V_3138, V_3139, V_3140, V_3141, V_3142, V_3143, V_3144, V_3145, V_3146, V_3147, V_3148, V_3149, V_3150, V_3151, V_3152, V_3153, V_3154, V_4020, V_4021, V_4022, V_4023, V_4024, V_4025, V_4026, V_4027, V_4028, V_4029, V_4030, V_4031, V_4032, V_4033, V_4034, V_4035, V_4036, V_4037, V_4038, V_4039, V_4040, V_4041, V_4042, V_4043, V_4044, V_4045, V_4046, V_4047, V_4048, V_4327, V_4410, V_4979, V_4980, V_4981, V_4982, V_4983, V_4984, V_4985, V_4986, V_4987, V_4988, V_4989, V_4990, V_4992, V_4993, V_4994, V_4995, V_4996, V_4997, V_4998, V_4999, V_50
18 p11.32-q12.2 29338 35648071 36% USP14, THOC1, COLEC12, CETN1, CLUL1, C18orf56, TYMS, ENOSF1, YES1, ADCYAP1, C18orf2, METTL4, hsa-mir-320c-1, hsa-mir-133a-1, hsa-mir-1-2, hsa-mir-320c-2, hsa-mir-187 V_0216_LC18106_Iafrate et al. (2004), V_2236_LC17918_Locke et al. (2006), V_5044_LC17825_Wong et al. V_0216, V_1289, V_1290, V_1291, V_1292, NDC80, SMCHD1, EMILIN2, LPIN2, MYOM1, MYL12A, MYL12B, TGIF1, DLGAP1, C18orf18, ZFP161, EPB41L3, (2007), V_5045_LC17914_Wong et al. (2007), V_5046_LC17976_Wong et al. (2007), V_5047_LC18053_Wong et V_1293, V_1518, V_1965, V_1966, V_1967, L3MBTL4, ARHGAP28, LAMA1, LRRC30, PTPRM, RAB12, KIAA0802, NDUFV2, ANKRD12, TWSG1, RALBP1, al. (2007), V_5048_LC18073_Wong et al. (2007), V_5049_LC18082_Wong et al. (2007), V_5050_LC18106_Wong V_1968, V_1969, V_1970, V_1971, V_1972, PPP4R1, RAB31, TXNDC2, VAPA, APCDD1, NAPG, FAM38B, FAM38B2, C18orf58, AMAC1L1, GNAL, MPPE1, et al. (2007), V_5052_LC18144_Wong et al. (2007), V_5053_LC18156_Wong et al. (2007) V_2236, V_3155, V_3156, V_3157, V_3158, IMPA2, ANKRD62, CIDEA, TUBB6, AFG3L2, SLMO1, SPIRE1, CEP76, PSMG2, PTPN2, SEH1L, CEP192, C18orf1, V_3159, V_3160, V_3161, V_3162, V_3163, C18orf19, RNMT, MC5R, MC2R, ZNF519, NF1L5, POTEC, ANKRD30B, ROCK1, KIAA1772, ESCO1, ABHD3, V_3164, V_3165, V_4049, V_4050, V_4051, MIB1, GATA6, CTAGE1, RBBP8, CABLES1, C18orf45, RIOK3, C18orf8, NPC1, ANKRD29, LAMA3, TTC39C, V_4052, V_4053, V_4054, V_4055, V_4056, CABYR, OSBPL1A, IMPACT, HRH4, ZNF521, SS18, PSMA8, TAF4B, KCTD1, AQP4, CHST9, CDH2, DSC3, DSC2, V_5044, V_5045, V_5046, V_5047, V_5048, DSC1, DSG1, DSG4, DSG3, DSG2, TTR, B4GALT6, MCART2, KIAA1012, RNF125, RNF138, MEP1B, FAM59A, V_5049, V_5050, V_5052, V_5053, V_5440, WBP11P1, KLHL14, C18orf34, ASXL3, NOL4, DTNA, MAPRE2, ZNF397, ZNF397OS, ZNF24, ZNF396, INO80C, V_5884, V_5885, V_5886, V_5887, V_5888, GALNT1, C18orf21, RPRD1A, SLC39A6, ELP2, MOCOS, FHOD3, C18orf10, KIAA1328, BRUNOL4 V_5889, V_5890, V_5891, V_5892, V_5893, V_5894, V_5895, V_5896, V_5897, V_5898, V_5899, V_5900, V_5901, V_5902, V_5903, V_5904, V_7178, V_7179, V_7180, V_7181, V_7183, V_7184, V_7834, V_7957, V_8001, V_8092, V_8103, V_8164, V_8854, V_8855, V_8856, V_8857, V_9294, V_9295, V_9296, V_9297, V_9778, V_9779, V_10523, V_10524, V_10525, V_10526, V_10527, V_10528, V_10529, V_10530, V_10531, V_22738, V_22773, V_22878, V_22909, V_23149, V_23224, V_23261, V_23320, V_23541, V_23542, V_23543
18 q21.1 44404930 44630625 10% PIAS2, KATNAL2, TCEB3CL2, TCEB3CL, TCEB3C, TCEB3B 18 q22.3-q23 72693590 77875127 44% ZNF407, C18orf33, ZADH2, TSHZ1, C18orf62, ZNF516, ZNF236, MBP, GALR1, SALL3, ATP9B, NFATC1, CTDP1, V_5064_LC18537_Wong et al. (2007) V_1519, V_1988, V_1989, V_4063, V_4064, KCNG2, PQLC1, TXNL4A, C18orf22, ADNP2 V_5064, V_5925, V_5926, V_5927, V_7190, V_8285, V_8860, V_8861, V_10539, V_23546, V_23547, V_23548, V_23549, V_23550, V_23551
19 p13.3-q13.43 124843 59077721 84% PPAP2C, MIER2, THEG, FAM148C, SHC2, ODF3L2, MADCAM1, C19orf20, CDC34, GZMM, BSG, HCN2, hsa-mir-1909, hsa-mir-1227, hsa-mir-637, hsa-mir-7-3, hsa-mir-220b, hsa-mir-1181, hsa- V_0220_LC18794_Iafrate et al. (2004), V_0221_LC19039_Iafrate et al. (2004), V_0808_LC18794_Sharp et al. V_0220, V_0221, V_0329, V_0340, V_0507, POLRMT, FGF22, RNF126, FSTL3, PRSSL1, PALM, C19orf21, PTBP1, AZU1, PRTN3, ELANE, CFD, MED16, mir-1238, hsa-mir-638, hsa-mir-199a-1, hsa-mir-24-2, hsa-mir-27a, hsa-mir-23a, hsa-mir- (2005), V_2237_LC18671_Locke et al. (2006), V_2238_LC18783_Locke et al. (2006), V_2239_LC18794_Locke et V_0508, V_0509, V_0510, V_0511, V_0512, C19orf22, KISS1R, ARID3A, WDR18, GRIN3B, C19orf6, CNN2, ABCA7, HMHA1, POLR2E, GPX4, SBNO2, STK11, 181c, hsa-mir-181d, hsa-mir-639, hsa-mir-1470, hsa-mir-640, hsa-mir-1270, hsa-mir- al. (2006), V_2240_LC18794_Locke et al. (2006), V_2241_LC18908_Locke et al. (2006), V_2242_LC18908_Locke V_0513, V_0514, V_0515, V_0516, V_0517, C19orf26, ATP5D, MIDN, C19orf23, CIRBP, C19orf24, MUM1, EFNA2, NDUFS7, GAMT, DAZAP1, RPS15, APC2, 1270, hsa-mir-641, hsa-mir-330, hsa-mir-642, hsa-mir-769, hsa-mir-220c, hsa-mir-150, et al. (2006), V_2243_LC19026_Locke et al. (2006), V_2244_LC19026_Locke et al. (2006), V_0518, V_0808, V_1299, V_1300, V_1301, C19orf25, PCSK4, REEP6, ADAMTSL5, PLK5P, MEX3D, MBD3, UQCR, TCF3, ONECUT3, ATP8B3, REXO1, hsa-mir-99b, hsa-let-7e, hsa-mir-125a, hsa-mir-643, hsa-mir-512-1, hsa-mir-512-1, hsa- V_2245_LC19036_Locke et al. (2006), V_2246_LC19081_Locke et al. (2006), V_2247_LC19092_Locke et al. V_1520, V_1521, V_1990, V_2237, V_2238, KLF16, FAM108A1, SCAMP4, ADAT3, CSNK1G2, C19orf34, BTBD2, MKNK2, MOBKL2A, C19orf36, AP3D1, mir-1323, hsa-mir-498, hsa-mir-520e, hsa-mir-515-1, hsa-mir-519e, hsa-mir-520f, hsa- (2006), V_4400_LC18834_Wong et al. (2007), V_5065_LC18671_Wong et al. (2007), V_5066_LC18671_Wong et V_2239, V_2240, V_2241, V_2242, V_2243, DOT1L, PLEKHJ1, SF3A2, AMH, JSRP1, OAZ1, C19orf35, LINGO3, LSM7, TMPRSS9, TIMM13, LMNB2, mir-515-1, hsa-mir-519c, hsa-mir-1283-1, hsa-mir-520a, hsa-mir-526b, hsa-mir-519b, al. (2007), V_5067_LC18671_Wong et al. (2007), V_5068_LC18671_Wong et al. (2007), V_5069_LC18671_Wong V_2244, V_2245, V_2246, V_2247, V_3180, GADD45B, DIRAS1, SLC39A3, SGTA, THOP1, ZNF554, ZNF555, ZNF556, ZNF77, ZNF57, TLE6, AES, GNA11, hsa-mir-525, hsa-mir-523, hsa-mir-518f, hsa-mir-520b, hsa-mir-518b, hsa-mir-526a-1, et al. (2007), V_5070_LC18730_Wong et al. (2007), V_5071_LC18730_Wong et al. (2007), V_3181, V_3182, V_3183, V_3184, V_3185, GNA15, S1PR4, NCLN, BRUNOL5, NFIC, DOHH, RAX2, FZR1, C19orf28, C19orf71, HMG20B, GIPC3, C19orf64, hsa-mir-520c, hsa-mir-518c, hsa-mir-524, hsa-mir-517a, hsa-mir-519d, hsa-mir-521-2, V_5072_LC18736_Wong et al. (2007), V_5073_LC18746_Wong et al. (2007), V_5074_LC18749_Wong et al. V_3186, V_3187, V_3188, V_3189, V_3190, TBXA2R, C19orf29OS, PIP5K1C, TJP3, APBA3, MRPL54, MATK, ZFR2, ATCAY, ITGB1BP3, DAPK3, EEF2, hsa-mir-520d, hsa-mir-517b, hsa-mir-520g, hsa-mir-516b-2, hsa-mir-526a-2, hsa-mir- (2007), V_5075_LC18752_Wong et al. (2007), V_5076_LC18770_Wong et al. (2007), V_5077_LC18773_Wong et V_3191, V_3192, V_3193, V_3194, V_3195, PIAS4, ZBTB7A, MAP2K2, CREB3L3, SIRT6, ANKRD24, EBI3, CCDC94, SHD, TMIGD2, FSD1, STAP2, MPND, 518e, hsa-mir-518a-1, hsa-mir-518d, hsa-mir-516b-1, hsa-mir-518a-2, hsa-mir-517c, hsa al. (2007), V_5078_LC18783_Wong et al. (2007), V_5079_LC18794_Wong et al. (2007), V_5080_LC18794_Wong V_3196, V_3197, V_3198, V_4065, V_4066, SH3GL1, CHAF1A, UBXN6, KIAA1881, LRG1, SEMA6B, Tmir-520h, hsa-mir-521-1, hsa-mir-522, hsa-mir-519a-1, hsa-mir-527, hsa-mir-516a-1, hsa et al. (2007), V_5081_LC18794_Wong et al. (2007), V_508 V_4067, V_4068, V_4069, V_4070, V_4071, mir-1283-2, hsa-mir-516a-2, hsa-mir-519a-2, hsa-mir-371, hsa-mir-372, hsa-mir-373, hsa V_4072, V_4073, V_4074, V_4075, V_4076, mir-935, hsa-mir-1274b V_4077, V_4078, V_4079, V_4080, V_4081, V_4082, V_4083, V_4084, V_4085, V_4086, V_4087, V_4400, V_5065, V_5066, V_5067, V_5068, V_5069, V_5070, V_5071, V_5072, V_5073, V_5074, V_5075, V_5076, V_5077, V_5078, V_5079, V_5080, V_5081, V_5082, V_5083, V_5084, V_5085, V_5086, V_5087, V_5088, V_5089, V_5090, V_5091, V_5092, V_5093, V_5094, V_5095, V_5096, V_5097, V_5098, V_5099, V_5100, V_5101, V_5102, V_5103, V_5104, V_5105, V_5106, V_5107, V_5108, V_5109, V_5110, V_5111, V_5112, V_5113, V_5114, V_5115, V_5338, V_5339, V_5340, V_5341, V_53 Supplementary Table 1 Page 8
20 p13-q13.33 90210 62964520 80% DEFB126, DEFB127, DEFB128, DEFB129, DEFB132, C20orf96, ZCCHC3, SOX12, NRSN2, TRIB3, RBCK1, hsa-mir-1292, hsa-mir-103-2, hsa-mir-663, hsa-mir-1825, hsa-mir-644, hsa-mir-499, hsa- V_0222_LC19227_Iafrate et al. (2004), V_0224_LC19418_Iafrate et al. (2004), V_0225_LC19530_Iafrate et al. V_0222, V_0224, V_0225, V_0226, V_0536, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, C20orf54, FAM110A, RPS10P5, ANGPT4, RSPO4, PSMF1, mir-1289-1, hsa-mir-645, hsa-mir-1302-5, hsa-mir-296, hsa-mir-298, hsa-mir-646, hsa- (2004), V_0226_LC19822_Iafrate et al. (2004), V_2249_LC19199_Locke et al. (2006), V_2250_LC19207_Locke et V_0537, V_0538, V_0539, V_0540, V_0541, C20orf46, RAD21L1, SDCBP2, FKBP1A, NSFL1C, SIRPB2, SIRPD, SIRPB1, SIRPG, SIRPA, PDYN, STK35, mir-1257, hsa-mir-1-1, hsa-mir-133a-2, hsa-mir-124-3, hsa-mir-941-1, hsa-mir-941-1, al. (2006), V_2251_LC19741_Locke et al. (2006), V_2252_LC19985_Locke et al. (2006), V_5120_LC19207_Wong V_1303, V_1522, V_1523, V_1524, V_1525, TGM3, TGM6, SNRPB, ZNF343, TMC2, NOP56, IDH3B, EBF4, CPXM1, C20orf141, FAM113A, VPS16A, PTPRA, hsa-mir-941-1, hsa-mir-941-1, hsa-mir-1914, hsa-mir-647 et al. (2007), V_5121_LC19253_Wong et al. (2007), V_5122_LC19294_Wong et al. (2007), V_1526, V_1991, V_1992, V_1993, V_1994, GNRH2, MRPS26, OXT, AVP, UBOX5, FASTKD5, DDRGK1, ITPA, SLC4A11, C20orf194, ATRN, GFRA4, ADAM33, V_5123_LC19298_Wong et al. (2007), V_5124_LC19312_Wong et al. (2007), V_5125_LC19365_Wong et al. V_1995, V_1996, V_2249, V_2250, V_2251, SIGLEC1, HSPA12B, C20orf27, SPEF1, CENPB, CDC25B, C20orf29, MAVS, PANK2, RNF24, SMOX, ADRA1D, (2007), V_5126_LC19402_Wong et al. (2007), V_5127_LC19406_Wong et al. (2007), V_5128_LC19494_Wong et V_2252, V_3205, V_3206, V_3207, V_3208, PRNP, PRND, PRNT, RASSF2, SLC23A2, C20orf30, PCNA, CDS2, PROKR2, C20orf196, CHGB, TRMT6, MCM8, al. (2007), V_5129_LC19510_Wong et al. (2007), V_5130_LC19530_Wong et al. (2007), V_5131_LC19539_Wong V_3209, V_3210, V_3211, V_3212, V_3213, CRLS1, LRRN4, FERMT1, BMP2, HAO1, TMX4, PLCB1, PLCB4, C20orf103, PAK7, ANKRD5, SNAP25, MKKS, et al. (2007), V_5132_LC19553_Wong et al. (2007), V_5133_LC19567_Wong et al. (2007), V_3214, V_3215, V_3216, V_3217, V_3218, C20orf94, JAG1, C20orf187, C20orf61, BTBD3, SPTLC3, ISM1, TASP1, ESF1, C20orf7, SEL1L2, MACROD2, V_5134_LC19585_Wong et al. (2007), V_5135_LC19601_Wong et al. (2007), V_5136_LC19617_Wong et al. V_3219, V_3220, V_3221, V_3222, V_3223, FLRT3, KIF16B, SNRPB2, OTOR, PCSK2, BFSP1, DSTN, RRBP1, BANF2, SNX5, C20orf72, OVOL2, CSRP2BP, (2007), V_5137_LC19651_Wong et al. (2007), V_5138_LC19665_Wong et al. (2007), V_5139_LC19754_Wong et V_4090, V_4091, V_4092, V_4093, V_4094, ZNF133, C20orf12, POLR3F, RBBP9, SEC23B, HARS2, C20orf78, C20orf79, SLC24A3, RIN2, NAT5, CRNKL1, al. (2007), V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007), V_5142_LC19835_Wong V_4095, V_4096, V_4097, V_4098, V_4099, C20orf26, INSM1, C20orf74, NCRNA00153, XRN2, NKX2- et al. (2007), V_5143_LC19835_Wong et al. (2007), V_514 V_4100, V_4101, V_4102, V_4103, V_4104, V_4105, V_4106, V_4107, V_4108, V_5120, V_5121, V_5122, V_5123, V_5124, V_5125, V_5126, V_5127, V_5128, V_5129, V_5130, V_5131, V_5132, V_5133, V_5134, V_5135, V_5136, V_5137, V_5138, V_5139, V_5140, V_5141, V_5142, V_5143, V_5144, V_5145, V_5146, V_5147, V_5148, V_5149, V_5150, V_5346, V_5347, V_5448, V_5449, V_6039, V_6040, V_6041, V_6042, V_6043, V_6044, V_6045, V_6046, V_6047, V_6048, V_6049, V_6050, V_6051, V_6052, V_6053, V_6054, V_6055, V_6056, V_6057, V_6058, V_6059, V_6060, V_6061, V_6062, V_6063, V_6064, V_6065, V_6066, V_6067, V_6068, V_6069, V_6070, V_6071, V_60
21 q11.1-q11.2 10907345 15120900 18% TPTE, BAGE, POTED V_0810_LC20058_Sharp et al. (2005), V_0811_LC20058_Sharp et al. (2005), V_2254_LC20058_Locke et al. V_0810, V_0811, V_1998, V_1999, V_2000, (2006), V_2255_LC20058_Locke et al. (2006), V_5157_LC20058_Wong et al. (2007), V_5158_LC20061_Wong et V_2001, V_2254, V_2255, V_3225, V_4110, al. (2007) V_5157, V_5158, V_7316, V_7317, V_8168, V_8197, V_8890, V_8891, V_9322, V_9828, V_10591, V_22847, V_22858, V_22880
21 q11.2 15554435 15892860 10% LIPI, RBM11, ABCC13, HSPA13, SAMSN1 V_4111 21 q11.2-q21.1 16063517 17978028 12% NRIP1, USP25, C21orf34 hsa-mir-99a, hsa-let-7c, hsa-mir-125b-2 V_5159_LC20079_Wong et al. (2007) V_5159, V_6131, V_9323, V_10592, V_23634
21 q21.3 28065813 28867911 10% ADAMTS1, ADAMTS5 21 q21.3-q22.3 29144591 48102348 66% N6AMT1, RNF160, RWDD2B, USP16, CCT8, C21orf7, BACH1, GRIK1, C21orf41, CLDN17, CLDN8, KRTAP24-1, hsa-mir-802 V_5161_LC20178_Wong et al. (2007), V_5162_LC20269_Wong et al. (2007), V_5163_LC20269_Wong et al. (2007) V_0542, V_2005, V_2006, V_3232, V_3233, KRTAP25-1, KRTAP26-1, KRTAP27-1, KRTAP13-3, KRTAP23-1, KRTAP13-1, KRTAP13-4, KRTAP15-1, KRTAP19- V_3234, V_3235, V_4114, V_5161, V_5162, 1, KRTAP19-2, KRTAP19-3, KRTAP19-5, KRTAP19-6, KRTAP20-1, KRTAP6-2, KRTAP22-1, KRTAP6-1, KRTAP20- V_5163, V_6133, V_6134, V_6135, V_6136, 4, KRTAP20-2, KRTAP20-3, KRTAP21-2, KRTAP21-1, KRTAP8-1, KRTAP7-1, KRTAP11-1, KRTAP19-8, TIAM1, V_6137, V_6138, V_6139, V_6140, V_7321, SOD1, SFRS15, HUNK, C21orf45, MRAP, URB1, C21orf119, C21orf63, TCP10L, SYNJ1, C21orf66, C21orf49, V_7322, V_7323, V_7324, V_7325, V_7326, C21orf62, OLIG2, OLIG1, C21orf54, IFNAR2, IFNAR1, IFNGR2, TMEM50B, DNAJC28, GART, SON, DONSON, V_7327, V_8036, V_8072, V_8290, V_8892, CRYZL1, ITSN1, MRPS6, SLC5A3, KCNE2, KCNE1, RCAN1, CLIC6, RUNX1, SETD4, CBR1, CBR3, DOPEY2, V_8893, V_8894, V_8895, V_8896, V_8897, MORC3, CHAF1B, CLDN14, SIM2, HLCS, DSCR6, PIGP, TTC3, DSCR3, DYRK1A, KCNJ6, DSCR4, DSCR8, V_9327, V_9328, V_9329, V_9832, V_9833, KCNJ15, ERG, ETS2, C21orf104, PSMG1, BRWD1, C21orf87, HMGN1, WRB, LCA5L, SH3BGR, B3GALT5, V_10601, V_10602, V_10603, V_10604, C21orf88, IGSF5, PCP4, DSCAM, BACE2, FAM3B, MX2, MX1, TMPRSS2, RIPK4, PRDM15, C2CD2, ZNF295, V_22579, V_23639, V_23640, V_23641, UMODL1, C21orf128, ABCG1, TFF3, TFF2, TFF1, TMPRSS3, UBASH3A, RSPH1, SLC37A1, PDE9A, WDR4, V_23642, V_23643, V_23644, V_29433 NDUFV3, PKNOX1, CBS, U2AF1, CRYAA, C21orf136, SIK
22 q11.1-q13.33 16061103 51186519 76% POTEH, OR11H1, KCNMB3L, CCT8L2, XKR3, GAB4, IL17RA, CECR6, CECR5, CECR1, CECR2, SLC25A18, hsa-mir-648, hsa-mir-185, hsa-mir-1306, hsa-mir-1286, hsa-mir-649, hsa-mir-301b, hsa- V_0235_LC20386_Iafrate et al. (2004), V_0236_LC20439_Iafrate et al. (2004), V_0237_LC20476_Iafrate et al. V_0235, V_0236, V_0237, V_0239, V_0334, ATP6V1E1, BCL2L13, BID, C22orf37, MICAL3, PEX26, TUBA8, USP18, DGCR6, PRODH, DGCR2, DGCR14, mir-130b, hsa-mir-650, hsa-mir-548j, hsa-mir-658, hsa-mir-659, hsa-mir-1281, hsa-mir- (2004), V_0239_LC20651_Iafrate et al. (2004), V_0688_LC20386_Sharp et al. (2005), V_0814_LC20342_Sharp et V_0336, V_0355, V_0543, V_0544, V_0545, TSSK2, GSC2, SLC25A1, CLTCL1, HIRA, MRPL40, UFD1L, CDC45L, CLDN5, RPL7AP70, Sep-05, GP1BB, TBX1, 33a, hsa-mir-1249, hsa-let-7a-3, hsa-let-7b al. (2005), V_0815_LC20342_Sharp et al. (2005), V_0816_LC20342_Sharp et al. (2005), V_0817_LC20342_Sharp V_0546, V_0547, V_0548, V_0549, V_0688, GNB1L, C22orf29, TXNRD2, COMT, ARVCF, C22orf25, DGCR8, TRMT2A, RANBP1, ZDHHC8, RTN4R, DGCR6L, et al. (2005), V_0818_LC20342_Sharp et al. (2005), V_0819_LC20395_Sharp et al. (2005), V_0814, V_0815, V_0816, V_0817, V_0818, GGTLC3, TMEM191B, RIMBP3, USP41, ZNF74, KLHL22, MED15, POM121L4P, TOP3B, SERPIND1, SNAP29, V_2029_LC20395_Urban et al (2006), V_2030_LC20342_Urban et al (2006), V_2031_LC20342_Urban et al (2006), V_0819, V_1310, V_1311, V_1312, V_1528, CRKL, AIFM3, LZTR1, THAP7, P2RX6, SLC7A4, POM121L7, GGT2, RIMBP3B, HIC2, RIMBP3C, UBE2L3, YDJC, V_2032_LC20386_Urban et al (2006), V_2033_LC20386_Urban et al (2006), V_2034_LC20342_Urban et al (2006), V_1529, V_1530, V_1531, V_1532, V_2007, CCDC116, SDF2L1, PPIL2, YPEL1, MAPK1, PPM1F, IGLV4-69, IGLV8-61, IGLV4-60, IGLV6-57, IGLV11-55, V_2035_LC20386_Urban et al (2006), V_2036_LC20386_Urban et al (2006), V_2037_LC20505_Urban et al (2006), V_2008, V_2009, V_2010, V_2011, V_2012, IGLV10-54, VPREB1, IGLV5-52, IGLV7-46, IGLV5-45, IGLV1-44, IGLV7-43, IGLV1-40, IGLV5-37, IGLV1-36, V_2038_LC20505_Urban et al (2006), V_2258_LC20342_Locke et al. (2006), V_2259_LC20342_Locke et al. (2006) V_2013, V_2014, V_2015, V_2016, V_2017, ZNF280B, ZNF280A, PRAME, IGLV2-33, IGL@, GGTLC2, IGLV3-27, IGLV3-25, IGLV2-23, IGLV3-22, IGLV3-21, V_2260_LC20342_Locke et al. (2006), V_2261_LC20342_Locke et al. (2006), V_2262_LC20342_Locke et al. V_2018, V_2019, V_2020, V_2021, V_2022, IGLV3-19, IGLV2-18, IGLV3-16, IGLV2-14, IGLV3-12, IGLV2-11, IGLV4-3, IGLV3-1, IGL@, RTDR1, GNAZ, RAB36, (2006), V_2263_LC20342_Locke et al. (2006), V_2264_LC20342_Locke et al. (2006), V_2265_LC20342_Locke et V_2023, V_2024, V_2025, V_2026, V_2027, BCR, IGLL1, C22orf43, RGL4, ZNF70, VPREB3, C22orf15, CHCHD10, MMP11, SMARCB1, DERL3, SLC2A11, al. (2006), V_2266_LC20342_Locke et al. (2006), V_2267_ V_2028, V_2029, V_2030, V_2031, V_2032, GSTT2B, DDTL, DDT, GSTT2, GSTT1, CABIN1, SUSD2, G V_2033, V_2034, V_2035, V_2036, V_2037, V_2038, V_2258, V_2259, V_2260, V_2261, V_2262, V_2263, V_2264, V_2265, V_2266, V_2267, V_2268, V_2269, V_2270, V_2271, V_2272, V_2273, V_3237, V_3238, V_3239, V_3240, V_3241, V_3242, V_3243, V_3244, V_3245, V_3246, V_4116, V_4117, V_4118, V_4119, V_4120, V_4121, V_4122, V_4123, V_4124, V_4125, V_4126, V_4127, V_4128, V_4129, V_4130, V_4131, V_4132, V_4133, V_4134, V_4135, V_4136, V_4137, V_4138, V_4139, V_4140, V_5167, V_5168, V_5169, V_5170, V_5171, V_5172, V_5173, V_5174, V_5175, V_5176, V_5177, V_5178, V_5179, V_5180, V_5181, V_5182, V_5183, V_5184, V_5185, V_5186, V_51
23 p22.33 2611926 3637815 10% CD99, XG, GYG2, ARSD, ARSE, ARSH, ARSF, CXorf28, MXRA5, PRKX V_3260, V_4142, V_7776, V_7777, V_7778, V_7780, V_7781, V_8291, V_8292, V_8293, V_8294, V_23329
23 q28 153110141 153647227 12% L1CAM, AVPR2, ARHGAP4, ARD1A, RENBP, HCFC1, TMEM187, IRAK1, MECP2, OPN1LW, TEX28P2, V_0344, V_0345, V_0673, V_0674, V_7770, OPN1MW, TEX28P1, OPN1MW2, TEX28, TKTL1, FLNA, EMD, RPL10, DNASE1L1, TAZ V_7771
List of regions showing losses in 5 or more cases
Chromosome Cytoband Start (bp) End (bp) Maximum Frequency Genes miRNAs aCGH copy number polymorphisms (CNVs) All copy number polymorphisms (CNVs)
1 p32.3-p22.2 54608823 91461522 30% CDCP2, CYB5RL, MRPL37, SSBP3, C1orf191, ACOT11, FAM151A, C1orf175, PARS2, TTC22, C1orf177, DHCR24, hsa-mir-101-1, hsa-mir-1262, hsa-mir-186 V_0008_LC0405_Iafrate et al. (2004), V_0009_LC0463_Iafrate et al. (2004), V_0010_LC0552_Iafrate et al. (2004), V_0008, V_0009, V_0010, V_0383, V_1000, TMEM61, BSND, PCSK9, USP24, PPAP2B, PRKAA2, C1orf168, C8A, C8B, DAB1, OMA1, TACSTD2, MYSM1, V_4226_LC0413_Wong et al. (2007), V_4227_LC0416_Wong et al. (2007), V_4229_LC0493_Wong et al. (2007), V_1001, V_1002, V_1003, V_1004, V_1005, JUN, FGGY, HOOK1, CYP2J2, C1orf87, NFIA, TM2D1, INADL, KANK4, USP1, DOCK7, ANGPTL3, ATG4C, V_4230_LC0507_Wong et al. (2007), V_4231_LC0527_Wong et al. (2007), V_4232_LC0542_Wong et al. (2007), V_1006, V_1009, V_1317, V_1318, V_1542, FOXD3, ALG6, ITGB3BP, EFCAB7, DLEU2L, PGM1, ROR1, UBE2U, CACHD1, RAVER2, JAK1, AK3L1, DNAJC6, V_4233_LC0552_Wong et al. (2007) V_1543, V_1544, V_1545, V_1546, V_2307, LEPR, LEPROT, PDE4B, SGIP1, TCTEX1D1, INSL5, WDR78, MIER1, SLC35D1, C1orf141, IL23R, IL12RB2, V_2308, V_2309, V_2310, V_2311, V_2312, SERBP1, GADD45A, GNG12, DIRAS3, GPR177, RPE65, DEPDC1, LRRC7, LRRC40, SFRS11, ANKRD13C, V_2313, V_3292, V_3293, V_3294, V_3295, HHLA3, CTH, PTGER3, ZRANB2, NEGR1, LRRIQ3, TNNI3K, LRRC53, C1orf173, CRYZ, TYW3, LHX8, SLC44A5, V_3296, V_3297, V_3298, V_3299, V_4226, ACADM, RABGGTB, MSH4, ASB17, ST6GALNAC3, ST6GALNAC5, PIGK, AK5, ZZZ3, USP33, FAM73A, NEXN, V_4227, V_4229, V_4230, V_4231, V_4232, FUBP1, DNAJB4, GIPC2, PTGFR, IFI44L, IFI44, ELTD1, LPHN2, TTLL7, PRKACB, SAMD13, DNASE2B, BXDC5, V_4233, V_5364, V_5495, V_5496, V_5497, GNG5, SPATA1, CTBS, C1orf180, SSX2IP, LPAR3, MCOLN2, WDR63, MCOLN3, SYDE2, C1orf52, BCL10, V_5498, V_5499, V_5500, V_5501, V_5502, DDAH1, CYR61, ZNHIT6, COL24A1, ODF2L, CLCA2, CLCA1, CLCA4, SH3GLB1, HS2ST1, LMO4, PKN2, GTF2B, V_5503, V_5504, V_5505, V_5506, V_6827, CCBL2, RBMXL1, GBP3, GBP1, GBP2, GBP7, GBP4, GBP V_6828, V_6829, V_6830, V_6831, V_6832, V_6834, V_6835, V_6836, V_6837, V_7815, V_7927, V_8064, V_8071, V_8135, V_8167, V_8916, V_8917, V_8918, V_8919, V_9361, V_9362, V_9363, V_9364, V_9883, V_9884, V_9885, V_9886, V_22534, V_22673, V_22701, V_22756, V_22790, V_22923, V_23116, V_23155, V_23160, V_23190, V_23231, V_23366, V_23367, V_23369, V_23370, V_23371, V_23372, V_23373
1 p22.1-p13.1 94015341 117776155 24% FNBP1L, BCAR3, DNTTIP2, GCLM, ABCA4, ARHGAP29, ABCD3, F3, SLC44A3, CNN3, ALG14, TMEM56, hsa-mir-760, hsa-mir-137, hsa-mir-553, hsa-mir-197, hsa-mir-320b-1, hsa-mir-942 V_0011_LC0611_Iafrate et al. (2004), V_0012_LC0649_Iafrate et al. (2004), V_0013_LC0711_Iafrate et al. (2004), V_0011, V_0012, V_0013, V_0258, V_0343, RWDD3, PTBP2, DPYD, SNX7, PALMD, FRRS1, AGL, SLC35A3, HIAT1, SASS6, CCDC76, LRRC39, DBT, V_0681_LC0649_Sharp et al. (2005), V_0682_LC0656_Sharp et al. (2005), V_2048_LC0649_Locke et al. (2006), V_0365, V_0384, V_0385, V_0386, V_0681, RTCD1, CDC14A, GPR88, VCAM1, EXTL2, SLC30A7, DPH5, S1PR1, OLFM3, COL11A1, RNPC3, AMY2B, V_2049_LC0673_Locke et al. (2006), V_4235_LC0611_Wong et al. (2007), V_4236_LC0622_Wong et al. (2007), V_0682, V_1012, V_1013, V_1014, V_1319, AMY1A, AMY1B, AMY1C, PRMT6, NTNG1, VAV3, SLC25A24, NBPF4, NBPF5, NBPF6, FAM102B, C1orf59, V_4237_LC0630_Wong et al. (2007), V_4238_LC0649_Wong et al. (2007), V_4239_LC0656_Wong et al. (2007), V_1320, V_1321, V_1322, V_1323, V_1324, PRPF38B, FNDC7, STXBP3, C1orf62, GPSM2, CLCC1, WDR47, RPL17P36, TAF13, TMEM167B, C1orf194, V_4240_LC0671_Wong et al. (2007), V_4241_LC0680_Wong et al. (2007), V_4242_LC0704_Wong et al. (2007), V_1325, V_1548, V_1549, V_1550, V_1551, KIAA1324, SARS, CELSR2, PSRC1, MYBPHL, SORT1, PSMA5, SYPL2, ATXN7L2, CYB561D1, AMIGO1, GPR61, V_4243_LC0729_Wong et al. (2007), V_0365_LC0642_Vissers et al. V_2048, V_2049, V_2314, V_2315, V_2316, GNAI3, GNAT2, AMPD2, GSTM4, GSTM2, GSTM1, GSTM5, GSTM3, EPS8L3, CSF1, AHCYL1, FAM40A, ALX3, V_2317, V_2318, V_2319, V_2320, V_2321, UBL4B, SLC6A17, KCNC4, RBM15, SLC16A4, HBXIP, PROK1, KCNA10, KCNA2, KCNA3, CD53, C1orf103, V_2322, V_3300, V_3301, V_3302, V_3303, TMEM77, CEPT1, DENND2D, CHI3L2, CHIA, C1orf88, OVGP1, WDR77, ATP5F1, C1orf162, ADORA3, RAP1A, V_3304, V_3305, V_3306, V_3307, V_4235, C1orf183, DDX20, KCND3, CTTNBP2NL, WNT2B, ST7L, CAPZA1, MOV10, RHOC, PPM1J, FAM19A3, SLC16A1, V_4236, V_4237, V_4238, V_4239, V_4240, LRIG2, MAGI3, PHTF1, RSBN1, PTPN22, BCL2L15, AP4B1, DCLRE1B, HIPK1, OLFML3, SYT6, TRIM33, BCAS2, V_4241, V_4242, V_4243, V_5195, V_5363, DENND2C, AMPD1, NRAS, CSDE1, SYCP1, TSHB, TSPAN2, NGF, VANGL1, CASQ2, NHLH2, SLC22A15, V_5507, V_5508, V_5509, V_5510, V_5511, C1orf161, ATP1A1, C1orf203, CD58, IGSF3, C1orf137, CD V_5512, V_6767, V_6768, V_6769, V_6770, V_6771, V_6772, V_6773, V_6774, V_6775, V_6776, V_6777, V_6838, V_6839, V_7884, V_7994, V_8078, V_8324, V_8325, V_8920, V_8921, V_8922, V_9365, V_9366, V_9367, V_9368, V_9369, V_9887, V_9888, V_9889, V_9890, V_9891, V_9892, V_9893, V_22533, V_22683, V_22902, V_23022, V_23050, V_23163, V_23202, V_23210, V_23332, V_23333, V_23334, V_23335, V_23336, V_23337, V_23338, V_23375
1 p12 118477579 120650514 14% WDR3, SPAG17, TBX15, WARS2, HAO2, HSD3B2, HSD3B1, ZNF697, PHGDH, HMGCS2, REG4, ADAM30, V_4244_LC0743_Wong et al. (2007), V_4245_LC0743_Wong et al. (2007), V_4246_LC0743_Wong et al. (2007) V_1015, V_1552, V_2323, V_3308, V_3309, NOTCH2 V_4244, V_4245, V_4246, V_8219, V_8326, V_9370, V_22949, V_23235 Supplementary Table 1 Page 9
1 q21.1 143978378 145426340 14% SRGAP2P2, PPIAL4B, NBPF9, PDE4DIP, SEC22B, NOTCH2NL, HFE2 V_2050_LC0752_Locke et al. (2006), V_4250_LC0752_Wong et al. (2007), V_4251_LC0752_Wong et al. (2007), V_0388, V_0389, V_1326, V_2050, V_2324, V_4252_LC0752_Wong et al. (2007), V_4253_LC0752_Wong et al. (2007) V_2325, V_3310, V_3311, V_3312, V_4250, V_4251, V_4252, V_4253, V_5199, V_5515, V_5516, V_5517, V_5518, V_5519, V_5520, V_6781, V_6782, V_6783, V_6784, V_8288, V_8923, V_9894, V_23035, V_23250, V_29494
1 q31.2 191614921 193752216 10% RGS18, RGS1, RGS13, RGS2, UCHL5, TROVE2, GLRX2, CDC73, B3GALT2 hsa-mir-1278 V_2340, V_2341, V_3323, V_6803, V_8930, V_8931
2 p25.1 7948829 9308358 10% ID2, KIDINS220, MBOAT2 V_5204 2 p25.1-p24.1 10912285 20508235 12% ATP6V1C2, PDIA6, KCNF1, C2orf50, PQLC3, ROCK2, E2F6, NTSR2, LPIN1, TRIB2, FAM84A, NBAS, DDX1, V_0689_LC1609_Sharp et al. (2005), V_4275_LC1625_Wong et al. (2007) V_0522, V_0689, V_1028, V_1348, V_1566, MYCN, FAM49A, RAD51AP2, VSNL1, SMC6, GEN1, MSGN1, KCNS3, NT5C1B, OSR1, TTC32, WDR35, MATN3, V_1567, V_2369, V_2370, V_2371, V_2372, LAPTM4A, SDC1, PUM2 V_2373, V_3344, V_3345, V_4275, V_5207, V_5970, V_7232, V_7233, V_7236, V_7868, V_8359, V_8360, V_8361, V_8362, V_8363, V_8364, V_8365, V_8937, V_9397, V_9398, V_9921, V_9922, V_9923, V_22562, V_22655, V_22748, V_23052, V_23595
2 p24.1 20797047 21147289 10% HS1BP3, GDF7, C2orf43 2 p12-p11.2 82633919 83537389 10% V_0265, V_2398, V_3372, V_8379, V_8952, V_9952
2 p11.1-q11.1 91630889 92325171 12% V_2400, V_23620
2 q13 110693019 112001961 12% LIMS3, MALL, NPHP1, RGPD6, BUB1, ACOXL, BCL2L11 V_2060_LC2134_Locke et al. (2006), V_4303_LC2134_Wong et al. (2007) V_0268, V_1595, V_2060, V_3384, V_4303, V_7227, V_8955, V_9428, V_22955, V_23253, V_23579
2 q14.2 119690818 121219076 10% MARCO, C1QL2, STEAP3, C2orf76, DBI, TMEM37, SCTR, TMEM177, PTPN4, EPB41L5, RALB, INHBB V_4304_LC2184_Wong et al. (2007) V_4304, V_5996
2 q14.3 122447670 125129507 14% MKI67IP, TSN, CNTNAP5 V_1596 2 q14.3 125199224 127536401 10% CNTNAP5, GYPC V_0530, V_3390, V_5997, V_7844, V_8386, V_22826, V_23176, V_23581
2 q14.3-q24.3 127761089 166701980 36% BIN1, CYP27C1, ERCC3, MAP3K2, PROC, IWS1, MYO7B, LIMS2, GPR17, SFT2D3, WDR33, POLR2D, hsa-mir-663b, hsa-mir-128-1 V_0024_LC2234_Iafrate et al. (2004), V_0025_LC2234_Iafrate et al. (2004), V_0693_LC2234_Sharp et al. (2005), V_0024, V_0025, V_0269, V_0270, V_0531, AMMECR1L, SAP130, UGCGL1, HS6ST1, RAB6C, CCDC74B, SMPD4, FAM128B, TUBA3E, CCDC115, IMP4, V_4305_LC2229_Wong et al. (2007), V_4306_LC2234_Wong et al. (2007), V_4307_LC2234_Wong et al. (2007), V_0532, V_0693, V_0973, V_1035, V_1036, PTPN18, POTEG, CFC1B, CFC1, ACTBL2, GPR148, FAM123C, ARHGEF4, FAM168B, PLEKHB2, POTEE, V_4308_LC2246_Wong et al. (2007), V_4309_LC2319_Wong et al. (2007), V_4310_LC2333_Wong et al. (2007), V_1037, V_1038, V_1356, V_1357, V_1358, C2orf14, FAM128A, TUBA3D, CCDC74A, C2orf27A, C2orf27B, ZNF72, C21orf99, GPR39, LYPD1, MGAT5, V_4311_LC2333_Wong et al. (2007), V_4312_LC2343_Wong et al. (2007), V_4313_LC2352_Wong et al. (2007), V_1359, V_1597, V_1598, V_1599, V_1600, TMEM163, ACMSD, CCNT2, YSK4, RAB3GAP1, ZRANB3, R3HDM1, UBXN4, LCT, MCM6, DARS, CXCR4, V_4314_LC2392_Wong et al. (2007), V_4315_LC2398_Wong et al. (2007), V_4316_LC2400_Wong et al. (2007), V_1601, V_2408, V_2409, V_2410, V_2411, THSD7B, HNMT, SPOPL, NXPH2, LRP1B, KYNU, ARHGAP15, GTDC1, ZEB2, ACVR2A, ORC4L, MBD5, EPC2, V_4317_LC2405_Wong et al. (2007) V_2412, V_2413, V_2414, V_3392, V_3393, KIF5C, LYPD6B, LYPD6, RND3, RBM43, NMI, TNFAIP6, RIF1, NEB, ARL5A, CACNB4, STAM2, FMNL2, PRPF40A, V_3394, V_3395, V_3396, V_3397, V_3398, ARL6IP6, RPRM, GALNT13, KCNJ3, NR4A2, GPD2, GALNT5, ERMN, CYTIP, ACVR1C, ACVR1, UPP2, CCDC148, V_4305, V_4306, V_4307, V_4308, V_4309, PKP4, DAPL1, TANC1, WDSUB1, BAZ2B, Mar-07, LY75, PLA2R1, ITGB6, C2orf12, RBMS1, TANK, PSMD14, V_4310, V_4311, V_4312, V_4313, V_4314, TBR1, SLC4A10, DPP4, GCG, FAP, IFIH1, GCA, KCNH7, FIGN, GRB14, COBLL1, SLC38A11, SCN3A, SCN2A, V_4315, V_4316, V_4317, V_5998, V_5999, CSRNP3, GALNT3 V_6000, V_6001, V_6002, V_6003, V_6004, V_6005, V_6006, V_6007, V_6008, V_6009, V_7229, V_7230, V_7231, V_7234, V_7235, V_7237, V_7238, V_7239, V_7240, V_7241, V_7881, V_7904, V_7965, V_7987, V_8172, V_8387, V_8388, V_8389, V_8390, V_8391, V_8392, V_8393, V_8960, V_8961, V_9429, V_9430, V_9431, V_9432, V_9433, V_9434, V_9961, V_9962, V_9963, V_9964, V_9965, V_9966, V_9967, V_9968, V_22548, V_22710, V_22794, V_22873, V_22988, V_22992, V_23012, V_23173, V_23582, V_23583, V_23584, V_23585, V_23586, V_23587, V_23588, V_29406, V_29428
2 q24.3 167696725 169509419 10% XIRP2, B3GALT1, STK39, LASS6 V_4318_LC2416_Wong et al. (2007) V_0533, V_3399, V_4318, V_23589
2 q31.2-q32.1 178993451 188455993 16% RBM45, OSBPL6, PRKRA, DFNB59, FKBP7, PLEKHA3, TTN, CCDC141, SESTD1, ZNF385B, CWC22, UBE2E3, hsa-mir-1258 V_4319_LC2466_Wong et al. (2007), V_4320_LC2500_Wong et al. (2007), V_4321_LC2510_Wong et al. (2007), V_0534, V_1039, V_1040, V_1041, V_1360, ITGA4, CERKL, NEUROD1, SSFA2, PPP1R1C, PDE1A, DNAJC10, FRZB, NCKAP1, DUSP19, NUP35, ZNF804A, V_4322_LC2517_Wong et al. (2007) V_1602, V_2417, V_2418, V_2419, V_3400, FSIP2, ZC3H15, ITGAV, FAM171B, ZSWIM2, CALCRL, TFPI V_3401, V_3402, V_3403, V_3404, V_4319, V_4320, V_4321, V_4322, V_6013, V_6014, V_6015, V_8225, V_8261, V_8394, V_8962, V_8963, V_9435, V_9436, V_9437, V_9438, V_9970, V_9971, V_9972, V_9973, V_9974, V_22852, V_22881, V_22885, V_23594, V_29437
2 q32.3 194378724 195676923 10% V_4323_LC2558_Wong et al. (2007) V_2420, V_4323, V_6018, V_7988, V_9439, V_22842, V_23597
2 q33.1 199221562 201273331 10% SATB2, C2orf69, C2orf60, C2orf47 V_8174 2 q33.2-q37.1 204429785 232616309 24% CD28, CTLA4, ICOS, PARD3B, NRP2, INO80D, NDUFS1, EEF1B2, GPR1, ZDBF2, ADAM23, DYTN, MDH1B, hsa-mir-1302-4, hsa-mir-548f-2, hsa-mir-26b, hsa-mir-375, hsa-mir-153-1 V_0030_LC2686_Iafrate et al. (2004), V_4324_LC2633_Wong et al. (2007), V_4325_LC2638_Wong et al. (2007), V_0030, V_0271, V_1045, V_1046, V_1605, FASTKD2, CPO, KLF7, CREB1, FAM119A, CCNYL1, FZD5, PLEKHM3, CRYGD, CRYGC, CRYGB, CRYGA, V_4326_LC2650_Wong et al. (2007), V_4328_LC2702_Wong et al. (2007), V_4329_LC2749_Wong et al. (2007) V_1606, V_2421, V_2422, V_2423, V_2424, C2orf80, IDH1, PIKFYVE, PTH2R, MAP2, C2orf21, RPE, C2orf67, ACADL, MYL1, LANCL1, CPS1, ERBB4, IKZF2, V_2425, V_2426, V_3405, V_3406, V_3407, SPAG16, BARD1, ABCA12, ATIC, FN1, MREG, PECR, TMEM169, XRCC5, Mar-04, SMARCAL1, RPL37A, IGFBP2, V_3408, V_4324, V_4325, V_4326, V_4328, IGFBP5, TNP1, DIRC3, TNS1, RUFY4, IL8RB, IL8RA, ARPC2, AAMP, PNKD, TMBIM1, C2orf62, SLC11A1, V_4329, V_6022, V_6023, V_6024, V_6025, CTDSP1, VIL1, USP37, RQCD1, PLCD4, ZNF142, BCS1L, RNF25, STK36, TTLL4, CYP27A1, PRKAG3, WNT6, V_6026, V_6027, V_6028, V_6029, V_6030, WNT10A, CDK5R2, FEV, CRYBA2, CCDC108, IHH, NHEJ1, SLC23A3, C2orf24, FAM134A, ZFAND2B, ATG9A, V_6031, V_6032, V_6033, V_6034, V_6035, ABCB6, ANKZF1, GLB1L, STK16, TUBA4A, TUBA4B, DNAJB2, PTPRN, DNPEP, DES, SPEG, GMPPA, ACCN4, V_6036, V_7244, V_7245, V_7246, V_7248, CHPF, TMEM198, OBSL1, INHA, STK11IP, SLC4A3, EPHA4, PAX3, CCDC140, SGPP2, FARSB, MOGAT1, V_7249, V_7251, V_7252, V_7253, V_7820, ACSL3, KCNE4, SCG2, AP1S3, WDFY1, MRPL44, SERPINE2, FAM124B, CUL3, DOCK10, IRS1, RHBDD1, V_7946, V_8395, V_8396, V_8397, V_8964, COL4A4, COL4A3, MFF, TM4SF20, AGFG1, C2orf83, SLC19A3, CCL20, WDR69, SPHKAP, PID1, DNER, TRIP12, V_8965, V_8966, V_9440, V_9441, V_9442, FBXO36, SLC16A14, SP110, SP140, SP140L, SP100, CAB39, ITM2C, GPR55, SPATA3, C2orf72, PSMD1, HTR2B, V_9975, V_9976, V_9977, V_9978, V_9979, ARMC9, B3GNT7, NCL, NMUR1, C2orf57, PTMA, PDE6D V_22528, V_22617, V_22648, V_22993, V_23599, V_23600, V_23602, V_23603, V_23604
2 q37.3 241415713 243070770 10% ANKMY1, DUSP28, RNPEPL1, CAPN10, GPR35, AQP12B, AQP12A, KIF1A, AGXT, C2orf54, SNED1, MTERFD2, V_0032_LC2814_Iafrate et al. (2004), V_0694_LC2814_Sharp et al. (2005), V_4331_LC2814_Wong et al. (2007) V_0032, V_0535, V_0694, V_1610, V_2429, PASK, PPP1R7, ANO7, HDLBP, Sep-02, FARP2, STK25, BOK, THAP4, ATG4B, DTYMK, ING5, D2HGDH, V_3410, V_3411, V_4331, V_7257, V_8028, GAL3ST2, NEU4, PDCD1, C2orf85 V_8286, V_8400, V_8967, V_8968, V_8969, V_9981, V_23020, V_23608, V_23609 Supplementary Table 1 Page 10
3 p24.3-p23 19975088 31906686 14% EFHB, RAB5A, C3orf48, KAT2B, SGOL1, ZNF385D, UBE2E2, UBE2E1, NKIRAS1, RPL15, NR1D2, THRB, RARB, V_4332_LC3007_Wong et al. (2007) V_0550, V_1053, V_1054, V_1616, V_1617, TOP2B, NGLY1, OXSM, LRRC3B, NEK10, SLC4A7, EOMES, CMC1, AZI2, ZCWPW2, C3orf53, RBMS3, TGFBR2, V_1618, V_2443, V_2444, V_2445, V_3419, GADL1, STT3B, OSBPL10 V_3420, V_3421, V_3422, V_3423, V_4332, V_5208, V_5371, V_6164, V_6165, V_6166, V_6167, V_6168, V_7404, V_7405, V_8050, V_8203, V_8415, V_8416, V_8417, V_8418, V_8419, V_8978, V_8979, V_8980, V_9447, V_9987, V_9988, V_9989, V_9990, V_22615, V_22642, V_22656, V_23056, V_23063, V_23096, V_23203, V_23679
3 p22.3-p22.2 33615421 38157975 12% CLASP2, PDCD6IP, STAC, DCLK3, EPM2AIP1, MLH1, LRRFIP2, GOLGA4, C3orf35, ITGA9, CTDSPL, VILL, hsa-mir-128-2, hsa-mir-26a-1 V_1365, V_1619, V_1620, V_2446, V_3425, PLCD1, DLEC1, ACAA1 V_7407, V_7408, V_7812, V_7913, V_8042, V_8420, V_9991, V_23683
3 p22.2-p22.1 38386400 41695099 10% XYLB, ACVR2B, EXOG, SCN5A, SCN10A, SCN11A, WDR48, GORASP1, TTC21A, CSRNP1, XIRP1, CX3CR1, V_2447, V_2448, V_3426, V_3427, V_7409, CCR8, SLC25A38, RPSA, MOBP, MYRIP, EIF1B, ENTPD3, RPL14, ZNF619, ZNF620, ZNF621, CTNNB1, ULK4 V_7985, V_8981, V_9992, V_29429
3 p14.3-q11.1 56708117 88182987 20% C3orf63, ARHGEF3, SPATA12, IL17RD, HESX1, APPL1, DNAH12, PDE12, ARF4, FAM116A, SLMAP, FLNB, hsa-mir-1284, hsa-mir-1324 V_0695_LC3383_Sharp et al. (2005), V_2061_LC3320_Locke et al. (2006), V_4340_LC3314_Wong et al. (2007), V_0555, V_0556, V_0557, V_0695, V_1055, DNASE1L3, ABHD6, RPP14, PXK, PDHB, KCTD6, ACOX2, FAM107A, FAM3D, C3orf67, FHIT, NPCDR1, PTPRG, V_4341_LC3320_Wong et al. (2007), V_4342_LC3338_Wong et al. (2007), V_4343_LC3365_Wong et al. (2007), V_1056, V_1367, V_1368, V_1369, V_1370, ID2B, C3orf14, FEZF2, CADPS, SYNPR, SNTN, C3orf49, THOC7, ATXN7, PSMD6, PRICKLE2, ADAMTS9, V_4344_LC3397_Wong et al. (2007) V_1371, V_1372, V_1623, V_1624, V_1625, SLC25A26, LRIG1, KBTBD8, SUCLG2, FAM19A1, FAM19A4, C3orf64, TMF1, UBA3, ARL6IP5, LMOD3, FRMD4B, V_1626, V_2061, V_2453, V_2454, V_2455, MITF, FOXP1, EIF4E3, GPR27, PROK2, RYBP, SHQ1, GLT8D4, PPP4R2, PDZRN3, CNTN3, FAM86D, FRG2C, V_2456, V_2457, V_2458, V_2459, V_2460, ZNF717, ROBO2, ROBO1, CADM2, VGLL3, CHMP2B, POU1F1, HTR1F, CGGBP1 V_2461, V_2462, V_2463, V_3431, V_3432, V_3433, V_3434, V_3435, V_3436, V_3437, V_4340, V_4341, V_4342, V_4343, V_4344, V_10000, V_10001, V_10002, V_10003, V_10004, V_5366, V_5367, V_5368, V_5369, V_5370, V_6184, V_6185, V_6186, V_6187, V_6188, V_6189, V_6190, V_6191, V_6192, V_6193, V_6194, V_6195, V_7416, V_7417, V_7418, V_8030, V_8048, V_8069, V_8076, V_8130, V_8272, V_8422, V_8423, V_8424, V_8425, V_8983, V_8984, V_8985, V_8986, V_8987, V_9449, V_9450, V_9451, V_9452, V_9996, V_9997, V_9998, V_9999, V_22503, V_22714, V_22741, V_22767, V_22823, V_22906, V_22962, V_22990, V_22991, V_23017, V_23118, V_23166, V_23690, V_23691, V_23692, V_23693, V_23695
3 q11.2 94014304 94529871 10% 3 q11.2 95035470 95947771 10% V_22638 3 q12.1-q12.3 98930894 101243421 10% COL8A1, C3orf26, FILIP1L, TMEM30C, TBC1D23, TOMM70A, LNP1, TMEM45A, GPR128, TFG, ABI3BP, IMPG2, V_0558, V_1629, V_10007, V_6197, V_6198, SENP7, FAM172B V_7423, V_9453, V_23656
3 q12.3-q13.11 102111196 103035462 10% ZPLD1 V_3440 3 q13.11 103647831 104430709 12% V_2465, V_6199, V_23658
3 q13.11-q13.13 105270556 108535977 16% ALCAM, CBLB, CCDC54, BBX, CD47, IFT57, HHLA2, MYH15, KIAA1524, DZIP3, RETNLB V_4348_LC3482_Wong et al. (2007) V_1630, V_1631, V_1632, V_1633, V_1634, V_1635, V_1636, V_2466, V_3442, V_3443, V_4348, V_5374, V_6200, V_8988, V_22502
3 q13.13-q13.31 110766662 113506732 10% PVRL3, CD96, ZBED2, PLCXD2, ABHD10, TAGLN3, TMPRSS7, C3orf52, GCET2, SLC9A10, CD200, BTLA, ATG3, hsa-mir-567 V_4350_LC3509_Wong et al. (2007) V_0561, V_3444, V_4350, V_6202, V_22627, SLC35A5, CCDC80, CD200R1L, CD200R1, GTPBP8, C3orf17, BOC, WDR52, CCDC52, SIDT1, KIAA2018, NAT13, V_23045 ATP6V1A
4 p16.3-q35.2 4499545 190899780 28% STX18, MSX1, CYTL1, STK32B, C4orf6, EVC2, EVC, CRMP1, C4orf50, JAKMIP1, WFS1, PPP2R2C, MAN2B2, hsa-mir-95, hsa-mir-548i-2, hsa-mir-572, hsa-mir-218-1, hsa-mir-573, hsa-mir-574, hsa- V_0045_LC4542_Iafrate et al. (2004), V_0047_LC5166_Iafrate et al. (2004), V_0048_LC5301_Iafrate et al. (2004), V_0045, V_0047, V_0048, V_0049, V_0050, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, TBC1D14, CCDC96, GRPEL1, SORCS2, PSAPL1, AFAP1, mir-1269, hsa-mir-575, hsa-mir-1255a, hsa-mir-576, hsa-mir-297, hsa-mir-367, hsa-mir- V_0049_LC5396_Iafrate et al. (2004), V_0050_LC5522_Iafrate et al. (2004), V_0051_LC5838_Iafrate et al. (2004), V_0051, V_0052, V_0053, V_0054, V_0130, ABLIM2, SH3TC1, HTRA3, ACOX3, C4orf23, GPR78, CPZ, HMX1, FAM90A2P, USP17, DEFB131, DRD5, SLC2A9, 302d, hsa-mir-302a, hsa-mir-302c, hsa-mir-302b, hsa-mir-577, hsa-mir-548g, hsa-mir- V_0052_LC5911_Iafrate et al. (2004), V_0053_LC5929_Iafrate et al. (2004), V_0054_LC6039_Iafrate et al. (2004), V_0274, V_0275, V_0276, V_0277, V_0278, WDR1, ZNF518B, CLNK, HS3ST1, RAB28, NKX3-2, BOD1L, CPEB2, C1QTNF7, FBXL5, BST1, CD38, FGFBP1, 578, hsa-mir-1979, hsa-mir-1305 V_0130_LC4464_Iafrate et al. (2004), V_0698_LC4236_Sharp et al. (2005), V_0699_LC4236_Sharp et al. (2005), V_0347, V_0571, V_0572, V_0573, V_0574, FGFBP2, TAPT1, LDB2, QDPR, CLRN2, LAP3, MED28, FAM184B, C4orf30, NCAPG, LCORL, SLIT2, PACRGL, V_0700_LC4677_Sharp et al. (2005), V_0701_LC4909_Sharp et al. (2005), V_0702_LC6244_Sharp et al. (2005), V_0575, V_0576, V_0577, V_0578, V_0579, KCNIP4, GPR125, PPARGC1A, DHX15, SOD3, CCDC149, LGI2, SEPSECS, PI4K2B, ZCCHC4, ANAPC4, V_0703_LC6244_Sharp et al. (2005), V_2067_LC4192_Locke et al. (2006), V_2068_LC4236_Locke et al. (2006), V_0580, V_0581, V_0582, V_0698, V_0699, SLC34A2, RBPJ, CCKAR, TBC1D19, STIM2, PCDH7, ARAP2, KIAA1239, C4orf19, RELL1, PGM2, TBC1D1, KLF3, V_2069_LC4236_Locke et al. (2006), V_2070_LC4236_Locke et al. (2006), V_2071_LC4709_Locke et al. (2006), V_0700, V_0701, V_0702, V_0703, V_0966, TLR10, TLR1, TLR6, FAM114A1, TMEM156, KLHL5, WDR19, RFC1, KLB, RPL9, LIAS, UGDH, C4orf34, UBE2K, V_2072_LC4898_Locke et al. (2006), V_2073_LC4909_Locke et al. (2006), V_2074_LC5743_Locke et al. (2006), V_0981, V_0989, V_0990, V_1071, V_1072, PDS5A, N4BP2, RHOH, CHRNA9, RBM47, NSUN7, APBB2, UCHL1, LIMCH1, PHOX2B, TMEM33, WDR21B, V_2075_LC5743_Locke et al. (2006), V_2076_LC5743_Locke et al. (2006), V_4373_LC4228_Wong et al. (2007), V_1073, V_1074, V_1075, V_1076, V_1077, SLC30A9, BEND4, SHISA3, ATP8A1, GRXCR1, KCTD8, YIPF7, GUF1, GNPDA2, GABRG1, GABRA2, COX7B2, V_4374_LC4228_Wong et al. (2007), V_4375_LC4231_Wong et al. (2007), V_4376_LC4234_Wong et al. (2007), V_1078, V_1079, V_1080, V_1081, V_1082, GABRA4, GABRB1, COMMD8, ATP10D, CORIN, NFXL1, CNGA1, NIPAL1, TXK, TEC, SLAIN2, SLC10A4, ZAR1, V_4377_LC4236_Wong et al. (2007), V_4378_LC4236_W V_1083, V_1084, V_1085, V_1087, V_1088, FRYL, OCIAD1, OCIAD2, DCUN1D4, LRRC66, SGCB, SP V_1089, V_1090, V_1091, V_1092, V_1093, V_1094, V_1095, V_1096, V_1097, V_1098, V_1099, V_1100, V_1101, V_1102, V_1103, V_1104, V_1105, V_1106, V_1107, V_1108, V_1109, V_1110, V_1111, V_1112, V_1113, V_1114, V_1115, V_1116, V_1384, V_1385, V_1386, V_1387, V_1388, V_1389, V_1390, V_1391, V_1392, V_1393, V_1394, V_1395, V_1396, V_1397, V_1398, V_1399, V_1400, V_1401, V_1402, V_1403, V_1404, V_1405, V_1406, V_1407, V_1408, V_1409, V_1410, V_1663, V_1664, V_1665, V_1666, V_1667, V_1668, V_1669, V_1670, V_1671, V_1672, V_1673, V_1674, V_1675, V_1676, V_1677, V_1678, V_1679, V_1680, V_1681, V_1682, V_1683, V_1684, V_16
5 p15.33 18263 3705207 10% PLEKHG4B, CCDC127, SDHA, PDCD6, C5orf55, EXOC3, SLC9A3, CEP72, TPPP, ZDHHC11, ZDHHC11B, BRD9, V_0704_LC6379_Sharp et al. (2005), V_0705_LC6379_Sharp et al. (2005), V_0706_LC6379_Sharp et al. (2005), V_0279, V_0280, V_0704, V_0705, V_0706, TRIP13, NKD2, SLC12A7, SLC6A19, SLC6A18, TERT, CLPTM1L, SLC6A3, LPCAT1, MRPL36, NDUFS6, IRX4, V_0707_LC6379_Sharp et al. (2005), V_2077_LC6379_Locke et al. (2006), V_2078_LC6379_Locke et al. (2006), V_0707, V_0967, V_2077, V_2078, V_2079, IRX2, C5orf38, IRX1 V_2079_LC6379_Locke et al. (2006), V_2080_LC6379_Locke et al. (2006), V_2081_LC6379_Locke et al. (2006), V_2080, V_2081, V_2564, V_3536, V_3537, V_4228_LC6379_Wong et al. (2007), V_4427_LC6379_Wong et al. (2007), V_4428_LC6379_Wong et al. (2007), V_3538, V_4228, V_4427, V_4428, V_4429, V_4429_LC6379_Wong et al. (2007) V_10086, V_6376, V_7471, V_7503, V_7506, V_7997, V_8271, V_8470, V_8471, V_8472, V_8473, V_8474, V_8475, V_8476, V_8477, V_8478, V_8479, V_9013, V_9502, V_22643, V_22654, V_22931, V_22936, V_23023, V_23280, V_23747, V_23749, V_23755, V_23761, V_23766, V_23777
5 p13.1-q31.1 41432132 132876511 26% PLCXD3, OXCT1, C5orf51, FBXO4, GHR, SEPP1, C5orf39, ZNF131, HMGCS1, CCL28, C5orf28, C5orf34, PAIP1, hsa-mir-581, hsa-mir-449a, hsa-mir-449b, hsa-mir-582, hsa-mir-9-2, hsa-mir-583, hsa- V_0064_LC7017_Iafrate et al. (2004), V_0065_LC7090_Iafrate et al. (2004), V_0066_LC7143_Iafrate et al. (2004), V_0064, V_0065, V_0066, V_0067, V_0283, NNT, FGF10, MRPS30, HCN1, EMB, PARP8, ISL1, PELO, ITGA1, ITGA2, MOCS2, FST, NDUFS4, ARL15, HSPB3, mir-548p, hsa-mir-548f-3, hsa-mir-1289-2 V_0067_LC7505_Iafrate et al. (2004), V_0710_LC7017_Sharp et al. (2005), V_0711_LC7017_Sharp et al. (2005), V_0588, V_0589, V_0590, V_0591, V_0592, SNX18, ESM1, GZMK, GZMA, CDC20B, GPX8, CCNO, DHX29, SKIV2L2, PPAP2A, SLC38A9, DDX4, IL31RA, V_0712_LC7231_Sharp et al. (2005), V_0713_LC7239_Sharp et al. (2005), V_2088_LC7017_Locke et al. (2006), V_0710, V_0711, V_0712, V_0713, V_1117, IL6ST, ANKRD55, MAP3K1, C5orf35, MIER3, GPBP1, PLK2, GAPT, RAB3C, PDE4D, DEPDC1B, ELOVL7, ERCC8, V_2089_LC7017_Locke et al. (2006), V_2090_LC7239_Locke et al. (2006), V_4441_LC6869_Wong et al. (2007), V_1118, V_1119, V_1415, V_1416, V_1700, NDUFAF2, C5orf43, ZSWIM6, KIF2A, DIMT1L, IPO11, LRRC70, HTR1A, RNF180, RGS7BP, FAM159B, V_4442_LC6871_Wong et al. (2007), V_4443_LC6881_Wong et al. (2007), V_4444_LC6892_Wong et al. (2007), V_2088, V_2089, V_2090, V_2578, V_2579, SDCCAG10, ADAMTS6, CENPK, PPWD1, TRIM23, C5orf44, SGTB, NLN, ERBB2IP, SFRS12, MAST4, CD180, V_4445_LC6923_Wong et al. (2007), V_4446_LC6996_Wong et al. (2007), V_4447_LC7017_Wong et al. (2007), V_2580, V_2581, V_2582, V_2583, V_2584, PIK3R1, SLC30A5, CCNB1, CENPH, MRPS36, CDK7, CCDC125, TAF9, RAD17, MARVELD2, OCLN, GTF2H2B, V_4448_LC7017_Wong et al. (2007), V_4449_LC7017_Wong et al. (2007), V_4450_LC7017_Wong et al. (2007), V_2585, V_2586, V_2587, V_2588, V_2589, SERF1B, SMN2, GUSBP1, SERF1A, SMN1, NAIP, GTF2H2, BDP1, MCCC2, CARTPT, MAP1B, MRPS27, PTCD2, V_4451_LC7017_Wong et al. (2007), V_4452_LC7017_Wong et al. (2007), V_4453_LC7022_Wong et al. (2007), V_2590, V_2591, V_2592, V_2593, V_2594, ZNF366, TNPO1, TMEM171, TMEM174, BTF3, ANKRA2, UTP15, ENC1, HEXB, GFM2, FAM169A, GCNT4, V_4454_LC7028_Wong et al. (2007), V_4455_LC7036_Wong et al. (2007), V_4456_LC7103_Wong et al. (2007), V_2595, V_2596, V_2597, V_2598, V_2599, ANKRD31, HMGCR, COL4A3BP, POLK, ANKDD1B, C5orf37, SV2C, IQGAP2, F2RL2, F2R, F2RL1, S100Z, V_4457_LC7105_Wong et al. (2007), V_4458_LC7135_Wong et al. (2007), V_4459_LC7146_Wong et al. (2007), V_2600, V_2601, V_3554, V_3555, V_3556, CRHBP, AGGF1, ZBED3, PDE8B, WDR41, OTP, TBCA, AP3B1, SCAMP1, LHFPL2, ARSB, DMGDH, BHMT2, V_4460_LC7164_Wong et al. (2007), V_4461_LC7181_W V_3557, V_3558, V_3559, V_3560, V_3561, BHMT, JMY, HOMER1, PAPD4, CMYA5, MTX3, THBS4, SERINC5, SPZ1, ZFYVE16, FAM151B, ANKRD34B, V_3562, V_3563, V_3564, V_3565, V_3566, DHFR, MSH3, RASGRF2, CKMT2, ZCCHC9, ACOT12, SS V_3567, V_3568, V_3569, V_3570, V_3571, V_3572, V_3573, V_3574, V_3575, V_3576, V_4441, V_4442, V_4443, V_4444, V_4445, V_4446, V_4447, V_4448, V_4449, V_4450, V_4451, V_4452, V_4453, V_4454, V_4455, V_4456, V_4457, V_4458, V_4459, V_4460, V_4461, V_4462, V_4463, V_4464, V_4465, V_4466, V_4467, V_4468, V_4469, V_4470, V_4471, V_4472, V_4473, V_4474, V_4475, V_4476, V_4477, V_4478, V_10111, V_10112, V_10113, V_10114, V_10115, V_10116, V_10117, V_10118, V_10119, V_10120, V_10121, V_10122, V_10123, V_10124, V_10125, V_10126, V_10127, V_10128, V_10129, V_10130, V_10131, V_10132, V_10133, V_
5 q31.3-q35.1 141503232 170105344 12% NDFIP1, SPRY4, FGF1, ARHGAP26, NR3C1, HMHB1, YIPF5, KCTD16, PRELID2, GRXCR2, SH3RF2, PLAC8L1, hsa-mir-584, hsa-mir-143, hsa-mir-145, hsa-mir-378, hsa-mir-1294, hsa-mir-1303, hsa- V_0594, V_1120, V_1417, V_1702, V_2604, LARS, RBM27, POU4F3, TCERG1, GPR151, PPP2R2B, STK32A, DPYSL3, JAKMIP2, SPINK1, SCGB3A2, mir-146a, hsa-mir-103-1, hsa-mir-218-2, hsa-mir-585 V_2605, V_2606, V_2607, V_3579, V_3580, C5orf46, SPINK5, SPINK6, SPINK7, SPINK9, FBXO38, HTR4, ADRB2, SH3TC2, ABLIM3, AFAP1L1, GRPEL2, V_3581, V_3582, V_3583, V_3584, V_3585, PCYOX1L, IL17B, PPARGC1B, PDE6A, SLC26A2, TIGD6, HMGXB3, CSF1R, PDGFRB, CDX1, SLC6A7, CAMK2A, V_10136, V_10137, V_5220, V_6451, ARSI, TCOF1, CD74, RPS14, NDST1, SYNPO, MYOZ3, RBM22, DCTN4, IRGM, ZNF300, GPX3, TNIP1, ANXA6, V_6452, V_6453, V_6454, V_6455, V_6456, CCDC69, GM2A, SLC36A3, SLC36A2, SLC36A1, FAT2, SPARC, ATOX1, G3BP1, GLRA1, NMUR2, GRIA1, V_6457, V_6458, V_6459, V_6460, V_6461, FAM114A2, MFAP3, GALNT10, SAP30L, HAND1, LARP1, C5orf4, CNOT8, GEMIN5, MRPL22, KIF4B, TIMD4, V_6462, V_6463, V_6464, V_6465, V_7475, HAVCR1, HAVCR2, MED7, FAM71B, ITK, C5orf40, NIPAL4, ADAM19, SOX30, C5orf52, THG1L, LSM11, CLINT1, V_7476, V_7477, V_7478, V_7479, V_7480, EBF1, RNF145, UBLCP1, IL12B, ADRA1B, TTC1, PWWP2A, FABP6, CCNJL, C1QTNF2, C5orf54, SLU7, PTTG1, V_7481, V_7930, V_7984, V_8499, V_9523, ATP10B, GABRB2, GABRA6, GLRXP3, GABRA1, GABRG2, CCNG1, NUDCD2, HMMR, MAT2B, ODZ2, WWC1, V_22633, V_22890, V_23111, V_23113, RARS, FBLL1, PANK3, SLIT3, CCDC99, DOCK2, FOXI1, LCP2, KCNIP1, KCNMB1 V_23214, V_23754
6 p24.3 8203453 8649634 10% SLC35B3 6 p24.3 9332432 9817268 10% V_6477, V_8507 Supplementary Table 1 Page 11
6 p24.3-p23 10235373 14806677 14% TFAP2A, C6orf218, GCNT2, GCNT6, C6orf52, PAK1IP1, TMEM14C, TMEM14B, MAK, GCM2, SYCP2L, ELOVL2, V_1418, V_1419, V_1704, V_2619, V_3594, NEDD9, TMEM170B, C6orf105, HIVEP1, EDN1, PHACTR1, TBC1D7, GFOD1, C6orf114, SIRT5, NOL7, RANBP9, V_3595, V_10141, V_10142, V_6478, CCDC90A, CD83 V_6479, V_7515, V_9030, V_29416
6 p21.1-q24.3 43634250 147756264 30% RSPH9, MRPS18A, VEGFA, MRPL14, TMEM63B, CAPN11, SLC29A1, HSP90AB1, SLC35B2, NFKBIE, hsa-mir-586, hsa-mir-206, hsa-mir-133b, hsa-mir-30c-2, hsa-mir-30a, hsa-mir-2113, hsa- V_0078_LC8319_Iafrate et al. (2004), V_0080_LC8417_Iafrate et al. (2004), V_0081_LC8420_Iafrate et al. (2004), V_0078, V_0080, V_0081, V_0082, V_0083, TMEM151B, TCTE1, AARS2, CDC5L, SUPT3H, RUNX2, CLIC5, ENPP4, ENPP5, RCAN2, CYP39A1, SLC25A27, mir-587, hsa-mir-548b, hsa-mir-588, hsa-mir-548a-2 V_0082_LC8431_Iafrate et al. (2004), V_0083_LC8439_Iafrate et al. (2004), V_0086_LC8475_Iafrate et al. (2004), V_0086, V_0087, V_0089, V_0090, V_0091, TDRD6, PLA2G7, MEP1A, GPR116, GPR110, TNFRSF21, CD2AP, GPR111, GPR115, OPN5, C6orf138, MUT, V_0087_LC8488_Iafrate et al. (2004), V_0089_LC8676_Iafrate et al. (2004), V_0090_LC8741_Iafrate et al. (2004), V_0092, V_0287, V_0288, V_0289, V_0290, CENPQ, C6orf140, RHAG, CRISP2, CRISP3, PGK2, CRISP1, DEFB133, DEFB114, DEFB113, DEFB111, V_0091_LC8757_Iafrate et al. (2004), V_0092_LC8865_Iafrate et al. (2004), V_0360_LC8473_Shaw-Smith et al. V_0291, V_0360, V_0601, V_0602, V_0718, DEFB112, TFAP2D, TFAP2B, RPS17P5, PKHD1, IL17A, IL17F, MCM3, PAQR8, EFHC1, TRAM2, TMEM14A, (2004), V_0718_LC8331_Sharp et al. (2005), V_4494_LC8335_Wong et al. (2007), V_4495_LC8337_Wong et al. V_1128, V_1129, V_1130, V_1131, V_1133, GSTA2, GSTA1, GSTA5, GSTA3, GSTA4, ICK, FBXO9, GCM1, ELOVL5, GCLC, KLHL31, LRRC1, C6orf142, (2007), V_4496_LC8416_Wong et al. (2007), V_4497_LC8475_Wong et al. (2007), V_4498_LC8515_Wong et al. V_1134, V_1135, V_1136, V_1137, V_1138, TINAG, FAM83B, HCRTR2, GFRAL, HMGCLL1, BMP5, COL21A1, DST, BEND6, KIAA1586, ZNF451, BAG2, (2007), V_4499_LC8546_Wong et al. (2007), V_4500_LC8569_Wong et al. (2007), V_4501_LC8583_Wong et al. V_1139, V_1140, V_1421, V_1422, V_1423, RAB23, PRIM2, KHDRBS2, FKBP1C, LGSN, PTP4A1, PHF3, EYS, BAI3, LMBRD1, COL19A1, COL9A1, FAM135A, (2007), V_4502_LC8592_Wong et al. (2007), V_4503_LC8644_Wong et al. (2007), V_4504_LC8662_Wong et al. V_1424, V_1425, V_1712, V_1713, V_1714, C6orf57, SMAP1, B3GAT2, OGFRL1, RIMS1, KCNQ5, KHDC1, DPPA5, C6orf221, OOEP, DDX43, C6orf150, (2007), V_4505_LC8672_Wong et al. (2007), V_4506_LC8686_Wong et al. (2007), V_4507_LC8786_Wong et al. V_1715, V_1716, V_1717, V_2627, V_2628, MTO1, EEF1A1, SLC17A5, CD109, COL12A1, COX7A2, TMEM30A, FILIP1, SENP6, MYO6, IMPG1, HTR1B, (2007), V_4508_LC8791_Wong et al. (2007), V_4509_LC8851_Wong et al. (2007) V_2629, V_2630, V_2631, V_2632, V_2633, IRAK1BP1, PHIP, HMGN3, LCA5, SH3BGRL2, ELOVL4, TTK, BCKDHB, FAM46A, IBTK, TPBG, UBE2CBP, V_2634, V_2635, V_2636, V_2637, V_2638, DOPEY1, PGM3, RWDD2A, ME1, PRSS35, SNAP91, RIPPLY2, CYB5R4, MRAP2, KIAA1009, TBX18, NT5E, V_2639, V_2640, V_2641, V_2642, V_2643, SNX14, SYNCRIP, FAM165A, HTR1E, CGA, ZNF292, GJB V_2644, V_2645, V_2646, V_2647, V_2648, V_2649, V_2650, V_2651, V_2652, V_2653, V_2654, V_2655, V_2656, V_3610, V_3611, V_3612, V_3613, V_3614, V_3615, V_3616, V_3617, V_3618, V_3619, V_3620, V_3621, V_3622, V_3623, V_3624, V_3625, V_3626, V_3627, V_3628, V_3629, V_3630, V_3631, V_3632, V_3633, V_3634, V_3635, V_3636, V_3637, V_3638, V_3639, V_3640, V_3641, V_3642, V_3643, V_4494, V_4495, V_4496, V_4497, V_4498, V_4499, V_4500, V_4501, V_4502, V_4503, V_4504, V_4505, V_4506, V_4507, V_4508, V_4509, V_10150, V_10151, V_10152, V_10153, V_10154, V_10155, V_10156, V_
6 q24.3-q25.1 147818519 151976734 10% SAMD5, SASH1, UST, MAP3K7IP2, SUMO4, ZC3H12D, PPIL4, C6orf72, KATNA1, LATS1, NUP43, PCMT1, V_4510_LC8882_Wong et al. (2007), V_4511_LC8897_Wong et al. (2007), V_4702_LC8905_Wong et al. (2007) V_0603, V_1718, V_1719, V_3644, V_4510, LRP11, RAET1E, RAET1G, ULBP2, ULBP1, RAET1L, ULBP3, PPP1R14C, IYD, PLEKHG1, MTHFD1L, AKAP12, V_4511, V_4702, V_6515, V_6516, V_6517, ZBTB2, RMND1, C6orf211, C6orf97 V_8177, V_22553, V_23783, V_29469
6 q25.2-q27 154168780 164854953 12% OPRM1, IPCEF1, MAGI1, RBM16, TIAM2, TFB1M, CLDN20, NOX3, ARID1B, C6orf35, ZDHHC14, SNX9, SYNJ2, hsa-mir-1202 V_4513_LC8977_Wong et al. (2007), V_4514_LC8985_Wong et al. (2007), V_4515_LC9007_Wong et al. (2007), V_0371, V_0604, V_2657, V_2658, V_2659, SERAC1, GTF2H5, TULP4, TMEM181, DYNLT1, SYTL3, EZR, C6orf99, RSPH3, TAGAP, FNDC1, SOD2, WTAP, V_4516_LC9028_Wong et al. (2007) V_2660, V_2661, V_2662, V_2663, V_2664, ACAT2, TCP1, MRPL18, PNLDC1, MAS1, IGF2R, SLC22A1, SLC22A2, SLC22A3, LPAL2, LPA, PLG, MAP3K4, V_2665, V_3646, V_3647, V_3648, V_3649, AGPAT4, PARK2, PACRG, QKI V_3650, V_3651, V_4513, V_4514, V_4515, V_4516, V_10168, V_10169, V_10170, V_10171, V_5226, V_5227, V_5228, V_6521, V_6522, V_6523, V_6524, V_7530, V_7531, V_7532, V_7533, V_7534, V_7535, V_7537, V_7538, V_7539, V_7540, V_7541, V_7542, V_7543, V_8027, V_8075, V_8110, V_8530, V_8531, V_8532, V_8533, V_8534, V_8535, V_8536, V_8537, V_9041, V_9042, V_9552, V_23121, V_23785
6 q27 165496829 168957060 10% C6orf118, PDE10A, T, PRR18, SFT2D1, BRP44L, RPS6KA2, RNASET2, FGFR1OP, CCR6, GPR31, TCP10L2, hsa-mir-1913 V_2098_LC9057_Locke et al. (2006) V_2098, V_2666, V_2667, V_3652, V_3653, UNC93A, TTLL2, TCP10, C6orf123, C6orf124, MLLT4, C6orf54, KIF25, FRMD1, DACT2, SMOC2 V_3654, V_3655, V_5229, V_5230, V_5231, V_5232, V_5233, V_5234, V_5235, V_6525, V_6526, V_6527, V_7545, V_7546, V_7547, V_8274, V_8538, V_8539, V_8540, V_8541, V_9553, V_9554, V_22786, V_23786, V_23787, V_23788, V_23789, V_23790, V_23791, V_29404, V_29405, V_29414
7 q21.11-q21.12 82367063 87191769 12% PCLO, SEMA3E, SEMA3A, SEMA3D, GRM3, KIAA1324L, DMTF1, C7orf23, CROT, ABCB4, ABCB1 V_0105_LC9667_Iafrate et al. (2004), V_0106_LC9682_Iafrate et al. (2004) V_0105, V_0106, V_3688, V_3689, V_10199, V_8003, V_8084, V_9062, V_9577
7 q21.12-q21.13 87914829 89863794 12% STEAP4, ZNF804B, C7orf62, STEAP1, STEAP2 V_4546_LC9689_Wong et al. (2007) V_1729, V_2702, V_2703, V_2704, V_3690, V_4546, V_10200, V_10201, V_5242, V_5399, V_7653, V_7654, V_8185, V_8572, V_8573, V_9063, V_9064, V_9578
7 q31.1-q31.2 114564931 115119650 10% MDFIC 7 q31.2-q31.31 115189313 118142829 10% TFEC, TES, CAV2, CAV1, MET, CAPZA2, ST7, ST7OT4, WNT2, ASZ1, CFTR, CTTNBP2, LSM8, ANKRD7 V_0621, V_1433, V_1738, V_1739, V_2709, V_10208, V_6565, V_6566, V_7597, V_8221, V_9070
7 q31.31 118353907 119018370 10% V_1164, V_1165, V_1740, V_6567, V_8052, V_22507
7 q31.31 119214533 120934856 12% KCND2, TSPAN12, ING3, C7orf58 V_4555_LC9863_Wong et al. (2007) V_1434, V_1741, V_2710, V_2711, V_4555, V_6568, V_10209
8 p23.3-p11.23 167973 37794304 24% ZNF596, FAM87A, FBXO25, C8orf42, ERICH1, C8orf68, CLN8, ARHGEF10, KBTBD11, MYOM2, CSMD1, MCPH1, hsa-mir-596, hsa-mir-548i-3, hsa-mir-597, hsa-mir-124-1, hsa-mir-598, hsa-mir-383, hsa- V_0116_LC10436_Iafrate et al. (2004), V_0731_LC10225_Sharp et al. (2005), V_0732_LC10225_Sharp et al. V_0116, V_0294, V_0295, V_0296, V_0297, ANGPT2, AGPAT5, XKR5, DEFB1, DEFA6, DEFA4, DEFA1, DEFT1P, DEFA3, DEFA5, FAM90A3, FAM90A13, mir-320a, hsa-mir-548h-4 (2005), V_0733_LC10380_Sharp et al. (2005), V_0734_LC10380_Sharp et al. (2005), V_0735_LC10380_Sharp et V_0338, V_0348, V_0349, V_0354, V_0627, FAM90A5, FAM90A20, DEFB108P2, DEFB103A, SPAG11B, DEFB104B, DEFB106B, DEFB105B, DEFB107B, al. (2005), V_0736_LC10380_Sharp et al. (2005), V_0737_LC10380_Sharp et al. (2005), V_0738_LC10380_Sharp V_0628, V_0629, V_0630, V_0631, V_0632, FAM90A23, FAM90A22, FAM90A15, FAM90A10, FAM90A8, FAM90A16, FAM90A9, DEFB107A, DEFB105A, et al. (2005), V_0739_LC10380_Sharp et al. (2005), V_0740_LC10408_Sharp et al. (2005), V_0731, V_0732, V_0733, V_0734, V_0735, DEFB106A, DEFB104A, SPAG11A, DEFB103B, DEFB4, DEFB108P1, FAM66E, FAM90A11, FAM90A12, MFHAS1, V_2112_LC10225_Locke et al. (2006), V_2113_LC10225_Locke et al. (2006), V_2114_LC10380_Locke et al. V_0736, V_0737, V_0738, V_0739, V_0740, ERI1, PPP1R3B, TNKS, MSRA, RP1L1, C8orf74, SOX7, XKR6, C8orf16, C8orf8, MTMR9, AMAC1L2, TDH, (2006), V_2115_LC10380_Locke et al. (2006), V_2116_LC10380_Locke et al. (2006), V_2117_LC10380_Locke et V_0835, V_0969, V_0970, V_1175, V_1176, C8orf12, FAM167A, BLK, C8orf14, GATA4, C8orf49, NEIL2, FDFT1, CTSB, DEFB134, ZNF705D, FAM86B1, al. (2006), V_2118_LC10380_Locke et al. (2006), V_2119_LC10380_Locke et al. (2006), V_2120_LC10408_Locke V_1177, V_1178, V_1179, V_1180, V_1181, DEFB130, ZNF705F, FAM66A, FAM86C, OR7E8P, LONRF1, DLC1, C8orf48, SGCZ, TUSC3, MSR1, FGF20, et al. (2006), V_2121_LC10408_Locke et al. (2006), V_2122_LC10408_Locke et al. (2006), V_1182, V_1183, V_1184, V_1185, V_1186, EFHA2, ZDHHC2, CNOT7, VPS37A, MTMR7, SLC7A2, PDGFRL, MTUS1, FGL1, PCM1, ASAH1, NAT1, NAT2, V_2123_LC10460_Locke et al. (2006), V_2124_LC10461_Locke et al. (2006), V_2125_LC10461_Locke et al. V_1188, V_1189, V_1190, V_1191, V_1192, PSD3, SH2D4A, CSGALNACT1, INTS10, LPL, SLC18A1, ATP6V1B2, LZTS1, GFRA2, DOK2, XPO7, NPM2, (2006), V_4276_LC10225_Wong et al. (2007), V_4575_LC10225_Wong et al. (2007), V_4576_LC10225_Wong et V_1193, V_1194, V_1195, V_1196, V_1439, FGF17, EPB49, FAM160B2, NUDT18, HR, REEP4, LGI3, SFTPC, BMP1, PHYHIP, POLR3D, PIWIL2, SLC39A14, al. (2007), V_4577_LC10380_Wong et al. (2007), V_4578_LC10380_Wong et al. (2007), V_4579_LC10380_Wong V_1440, V_1441, V_1442, V_1443, V_1444, PPP3CC, SORBS3, PDLIM2, KIAA1967, BIN3, EGR3, RHOBTB2, TNFRSF10B, TNFRSF10C, TNFRSF10D, et al. (2007), V_4580_LC10380_Wong et al. (2007), V_458 V_1445, V_1446, V_1447, V_1448, V_1449, TNFRSF10A, CHMP7, LOXL2, ENTPD4, SLC25A37, NKX3 V_1450, V_1451, V_1452, V_1453, V_1454, V_1455, V_1456, V_1457, V_1458, V_1459, V_1751, V_1752, V_1753, V_1754, V_1755, V_1756, V_1757, V_1758, V_1759, V_1760, V_1761, V_1762, V_1763, V_1764, V_1765, V_1766, V_1767, V_1768, V_1769, V_1770, V_1771, V_1772, V_1773, V_1774, V_1775, V_1776, V_1777, V_2112, V_2113, V_2114, V_2115, V_2116, V_2117, V_2118, V_2119, V_2120, V_2121, V_2122, V_2123, V_2124, V_2125, V_2723, V_2724, V_2725, V_2726, V_2727, V_2728, V_2729, V_2730, V_2731, V_2732, V_2733, V_2734, V_2735, V_2736, V_2737, V_2738, V_2739, V_2740, V_2741, V_2742, V_2743, V_27
8 p11.23-p11.22 38170917 39596665 12% WHSC1L1, LETM2, FGFR1, C8orf86, TACC1, PLEKHA2, HTRA4, TM2D2, ADAM9, ADAM32, ADAM5P, ADAM3A, V_4589_LC10531_Wong et al. (2007) V_1197, V_1198, V_1199, V_1200, V_1460, ADAM18 V_1461, V_1462, V_1463, V_1464, V_1465, V_1778, V_1779, V_2749, V_3728, V_4589, V_7683, V_7684
9 p24.3-p21.1 1091237 31877461 18% SMARCA2, VLDLR, KCNV2, KIAA0020, CARM1L, RFX3, GLIS3, SLC1A1, C9orf68, PPAPDC2, CDC37L1, AK3, hsa-mir-101-2, hsa-mir-491, hsa-mir-31, hsa-mir-876, hsa-mir-873 V_0127_LC11147_Iafrate et al. (2004), V_0128_LC11164_Iafrate et al. (2004), V_4615_LC11143_Wong et al. V_0127, V_0128, V_0649, V_1211, V_1212, RCL1, JAK2, INSL6, INSL4, RLN2, RLN1, C9orf46, CD274, PDCD1LG2, KIAA1432, ERMP1, KIAA2026, MLANA, (2007), V_4616_LC11224_Wong et al. (2007), V_4617_LC11257_Wong et al. (2007) V_1213, V_1470, V_1471, V_1472, V_1473, RANBP6, IL33, TPD52L3, UHRF2, GLDC, SNRPEL1, KDM4C, C9orf123, PTPRD, TYRP1, C9orf150, MPDZ, V_1474, V_1810, V_1811, V_1812, V_1813, C9orf146, NFIB, ZDHHC21, CER1, FREM1, TTC39B, SNAPC3, PSIP1, C9orf93, C9orf92, BNC2, CNTLN, SH3GL2, V_1814, V_1815, V_1816, V_1817, V_1818, ADAMTSL1, FAM154A, RRAGA, HAUS6, ADFP, DENND4C, RPS6, ACER2, SLC24A2, MLLT3, KIAA1797, V_1819, V_1820, V_1821, V_2782, V_2783, PTPLAD2, IFNB1, IFNW1, IFNA21, IFNA4, IFNA7, IFNA10, IFNA16, IFNA17, IFNA14, IFNA5, KLHL9, IFNA6, V_2784, V_2785, V_2786, V_2787, V_2788, IFNA13, IFNA2, IFNA8, IFNA1, MTAP, C9orf53, CDKN2A, CDKN2B, DMRTA1, ELAVL2, C9orf134, TUSC1, V_2789, V_2790, V_2791, V_2792, V_2793, C9orf82, PLAA, IFT74, LRRC19, TEK, C9orf11, MOBKL2B, C9orf35, IFNK, C9orf72, LINGO2 V_2794, V_2795, V_2796, V_2797, V_2798, V_2799, V_2800, V_2801, V_2802, V_2803, V_2804, V_2805, V_2806, V_2807, V_2808, V_2809, V_2810, V_2811, V_2812, V_2813, V_3755, V_3756, V_3757, V_3758, V_3759, V_3760, V_3761, V_3762, V_3763, V_3764, V_3765, V_3766, V_3767, V_3768, V_4615, V_4616, V_4617, V_5259, V_5260, V_5261, V_5408, V_5409, V_5410, V_5411, V_5412, V_6676, V_6677, V_6678, V_6679, V_6680, V_6681, V_6682, V_6683, V_6684, V_7719, V_7720, V_7737, V_7739, V_7740, V_7747, V_7803, V_7833, V_7839, V_7859, V_7912, V_8006, V_8026, V_8068, V_8113, V_8159, V_8173, V_8207, V_8237, V_8258, V_8619, V_8620, V_8621, V_8622, V_8623, V_8624, V_8625, V_8626, V_9103, V_9104, V_9105, V_9106, V_9107, V_9108, V_9109, V_9110, V_9111, V_9112, V_9113, V_9114, V_9115, V_9116, V_9117, V_91 Supplementary Table 1 Page 12
9 p13.3-q34.11 34432289 130352555 44% C9orf25, DNAI1, ENHO, CNTFR, C9orf23, DCTN3, ARID3C, SIGMAR1, GALT, IL11RA, CCL27, CCL19, CCL21, hsa-mir-1299, hsa-mir-204, hsa-mir-7-1, hsa-let-7a-1, hsa-let-7f-1, hsa-let-7d, hsa-mir- V_0129_LC11470_Iafrate et al. (2004), V_0131_LC11661_Iafrate et al. (2004), V_0742_LC11330_Sharp et al. V_0129, V_0131, V_0302, V_0303, V_0305, C9orf144, KIAA1045, DNAJB5, C9orf131, VCP, FANCG, PIGO, STOML2, KIAA1539, UNC13B, RUSC2, FAM166B, 23b, hsa-mir-27b, hsa-mir-24-1, hsa-mir-1302-8, hsa-mir-32, hsa-mir-455, hsa-mir-147, (2005), V_0743_LC11344_Sharp et al. (2005), V_0744_LC11330_Sharp et al. (2005), V_0745_LC11330_Sharp et V_0306, V_0650, V_0651, V_0652, V_0742, TESK1, CD72, SIT1, CCDC107, C9orf100, CA9, TPM2, TLN1, CREB3, GBA2, RGP1, NPR2, SPAG8, HINT2, hsa-mir-600, hsa-mir-601, hsa-mir-181a-2, hsa-mir-181b-2 al. (2005), V_0746_LC11330_Sharp et al. (2005), V_0747_LC11330_Sharp et al. (2005), V_0748_LC11330_Sharp V_0743, V_0744, V_0745, V_0746, V_0747, C9orf127, C9orf128, OR13J1, HRCT1, OR2S2, RECK, GLIPR2, CCIN, CLTA, GNE, RNF38, MELK, PAX5, et al. (2005), V_0749_LC11330_Sharp et al. (2005), V_0750_LC11344_Sharp et al. (2005), V_0748, V_0749, V_0750, V_0751, V_0752, ZCCHC7, GRHPR, ZBTB5, POLR1E, FBXO10, TOMM5, FRMPD1, RG9MTD3, EXOSC3, WDR32, MCART1, SHB, V_0751_LC11344_Sharp et al. (2005), V_0752_LC11330_Sharp et al. (2005), V_0753_LC11344_Sharp et al. V_0753, V_0754, V_0755, V_0756, V_0757, ALDH1B1, IGFBPL1, C9orf51, ANKRD18A, C9orf122, CNTNAP3, FAM75A1, ZNF658B, FAM75A2, FAM74A1, (2005), V_0754_LC11330_Sharp et al. (2005), V_0755_LC11330_Sharp et al. (2005), V_0756_LC11344_Sharp et V_0758, V_0759, V_0760, V_0761, V_1214, FAM75A3, FAM74A3, ZNF658, FAM74A2, FAM75A4, FAM75A5, ANKRD20A2, CBWD7, FOXD4L2, ANKRD20A1, al. (2005), V_0757_LC11344_Sharp et al. (2005), V_0758_LC11344_Sharp et al. (2005), V_0759_LC11344_Sharp V_1215, V_1475, V_1476, V_1823, V_1824, FAM75A6, CNTNAP3B, FAM27C, FAM27A, FAM27E2, FAM27E1, FAM27D1, FAM75A7, FAM27B, ANKRD20A3, et al. (2005), V_0760_LC11496_Sharp et al. (2005), V_0761_LC11498_Sharp et al. (2005), V_1825, V_1826, V_1827, V_1828, V_1829, FOXD4L6, CBWD6, ANKRD20A4, CCDC29, FOXD4L5, FOXD4L4, CBWD5, CBWD3, FOXD4L3, PGM5, C9orf71, V_2127_LC11326_Locke et al. (2006), V_2128_LC11330_Locke et al. (2006), V_2129_LC11330_Locke et al. V_1830, V_1831, V_1832, V_2127, V_2128, PIP5K1B, FAM122A, PRKACG, FXN, TJP2, C9orf61, APBA1, PTAR1, C9orf135, MAMDC2, SMC5, KLF9, TRPM3, (2006), V_2131_LC11330_Locke et al. (2006), V_2132_LC11344_Locke et al. (2006), V_2133_LC11330_Locke et V_2129, V_2131, V_2132, V_2133, V_2134, C9orf63, TMEM2, FAM108B1, C9orf85, C9orf57, GDA, ZFAND5, TMC1, ALDH1A1, ANXA1, RORB, TRPM6, al. (2006), V_2134_LC11330_Locke et al. (2006), V_2135_LC11330_Locke et al. (2006), V_2136_LC11330_Locke V_2135, V_2136, V_2137, V_2138, V_2139, C9orf40, C9orf41, C9orf95, OSTF1, PCSK5, RFK, GCNT1, et al. (2006), V_2137_LC11330_Locke et al. (2006), V_213 V_2140, V_2141, V_2142, V_2143, V_2144, V_2145, V_2146, V_2147, V_2148, V_2149, V_2150, V_2151, V_2816, V_2817, V_2819, V_2820, V_2821, V_2822, V_2823, V_2824, V_2825, V_2826, V_2827, V_2828, V_2829, V_2830, V_2831, V_2832, V_2833, V_2834, V_2835, V_2836, V_2837, V_3769, V_3770, V_3771, V_3772, V_3773, V_3774, V_3775, V_3776, V_3777, V_3778, V_3779, V_3780, V_3781, V_4188, V_4618, V_4619, V_4620, V_4621, V_4622, V_4623, V_4624, V_4625, V_4626, V_4627, V_4628, V_4629, V_4630, V_4631, V_4632, V_4633, V_4634, V_4635, V_4636, V_4637, V_4638, V_4639, V_4640, V_4641, V_4642, V_4643, V_4644, V_4645, V_4646, V_4647, V_46
9 q34.13-q34.3 134854254 137594877 12% MED27, NTNG2, SETX, TTF1, C9orf171, BARHL1, DDX31, GTF3C4, C9orf98, C9orf9, TSC1, GFI1B, GTF3C5, V_0132_LC11835_Iafrate et al. (2004), V_4657_LC11835_Wong et al. (2007), V_4658_LC11835_Wong et al. V_0132, V_0653, V_1834, V_3784, V_4657, CEL, RALGDS, GBGT1, OBP2B, ABO, SURF6, MED22, RPL7A, SURF1, SURF2, SURF4, C9orf96, REXO4, (2007), V_4659_LC11848_Wong et al. (2007), V_4660_LC11849_Wong et al. (2007) V_4658, V_4659, V_4660, V_5265, V_6722, ADAMTS13, C9orf7, SLC2A6, ADAMTSL2, FAM163B, DBH, SARDH, VAV2, BRD3, WDR5, RXRA, COL5A1, V_6723, V_6724, V_7730, V_7731, V_8279, C9orf104 V_8634, V_8635, V_9627, V_10311, V_10312, V_10313, V_10314, V_22581, V_23026, V_23890, V_23891, V_23892, V_23893, V_23894
10 p11.1-q21.1 38949608 55361606 18% CCNYL2, ZNF33B, BMS1, RET, CSGALNACT2, RASGEF1A, FXYD4, HNRNPF, ZNF487, ZNF239, ZNF485, hsa-mir-605 V_0136_LC12274_Iafrate et al. (2004), V_0763_LC12261_Sharp et al. (2005), V_0764_LC12274_Sharp et al. V_0136, V_0307, V_0402, V_0763, V_0764, ZNF32, C10orf136, CXCL12, TMEM72, RASSF4, C10orf10, C10orf25, ZNF22, OR13A1, ALOX5, Mar-08, ANUBL1, (2005), V_2152_LC12261_Locke et al. (2006), V_2153_LC12274_Locke et al. (2006), V_2154_LC12274_Locke et V_1222, V_1223, V_1224, V_1225, V_1226, FAM21C, AGAP4, PTPN20A, FRMPD2L2, FAM35B, SYT15, GPRIN2, ANXA8L1, PPYR1, FAM25B, BMS1P2, al. (2006), V_2155_LC12288_Locke et al. (2006), V_2156_LC12305_Locke et al. (2006), V_4677_LC12257_Wong V_1227, V_1482, V_1483, V_1877, V_1878, CTSLL7, FAM25HP, FAM21B, ASAH2C, BMS1P6, FAM25G, ANXA8, ZNF488, RBP3, GDF2, GDF10, PTPN20B, et al. (2007), V_4678_LC12257_Wong et al. (2007), V_4679_LC12257_Wong et al. (2007), V_1879, V_1880, V_1881, V_2152, V_2153, FRMPD2L1, CTGLF9P, FAM25C, BMS1P7, FRMPD2, MAPK8, ARHGAP22, WDFY4, LRRC18, C10orf72, V_4680_LC12257_Wong et al. (2007), V_4681_LC12274_Wong et al. (2007), V_4682_LC12274_Wong et al. V_2154, V_2155, V_2156, V_2860, V_2861, FAM170B, C10orf128, C10orf71, DRGX, ERCC6, CHAT, SLC18A3, C10orf53, OGDHL, PARG, FAM21D, AGAP8, (2007), V_4683_LC12274_Wong et al. (2007), V_4684_LC12274_Wong et al. (2007), V_4685_LC12274_Wong et V_2862, V_2863, V_2864, V_2865, V_2866, TIMM23B, AGAP7, MSMB, NCOA4, TIMM23, AGAP6, FAM21A, ASAH2, SGMS1, ASAH2B, A1CF, PRKG1, al. (2007), V_4686_LC12298_Wong et al. (2007), V_4687_LC12274_Wong et al. (2007), V_4688_LC12274_Wong V_2867, V_3795, V_3796, V_3797, V_3798, CSTF2T, DKK1, MBL2 et al. (2007), V_4689_LC12274_Wong et al. (2007), V_4690_LC12274_Wong et al. (2007), V_3799, V_3800, V_3801, V_4677, V_4678, V_4691_LC12288_Wong et al. (2007), V_4692_LC12288_Wong et al. (2007), V_4693_LC12288_Wong et al. V_4679, V_4680, V_4681, V_4682, V_4683, (2007), V_4771_LC12261_Wong et al. (2007) V_4684, V_4685, V_4686, V_4687, V_4688, V_4689, V_4690, V_4691, V_4692, V_4693, V_4771, V_5266, V_5267, V_5595, V_5596, V_5597, V_5598, V_6766, V_6862, V_6863, V_6865, V_6866, V_6867, V_6868, V_6869, V_6870, V_6871, V_6872, V_7974, V_8138, V_8202, V_8247, V_8277, V_8644, V_8645, V_8646, V_8647, V_8648, V_8649, V_8650, V_8651, V_8652, V_8653, V_8654, V_9147, V_9148, V_9149, V_9150, V_9151, V_9152, V_9153, V_9154, V_9155, V_9156, V_9639, V_9640, V_9641, V_10324, V_10325, V_10326, V_22960, V_22968, V_22969, V_22970, V_23265, V_23267, V_23384, V_23386, V_29468, V_29470, V_29471
10 q21.1 55648108 56900775 10% PCDH15 hsa-mir-548f-1 V_2868, V_2869, V_2870, V_3802, V_3803, V_6874, V_7878, V_9154, V_9157, V_9642, V_10327, V_10328, V_10329
10 q21.1-q21.3 57154391 66605581 18% PCDH15, ZWINT, IPMK, CISD1, UBE2D1, TFAM, BICC1, PHYHIPL, FAM13C, SLC16A9, CCDC6, C10orf40, ANK3, hsa-mir-1296 V_4694_LC12333_Wong et al. (2007), V_4695_LC12340_Wong et al. (2007), V_4696_LC12350_Wong et al. V_0987, V_0988, V_1228, V_1229, V_1484, ARL4P, CDC2, RHOBTB1, TMEM26, C10orf107, ARID5B, RTKN2, ZNF365, ADO, EGR2, NRBF2, JMJD1C, REEP3 (2007), V_4697_LC12385_Wong et al. (2007), V_4698_LC12387_Wong et al. (2007), V_4699_LC12389_Wong et V_1882, V_1883, V_1884, V_2040, V_2871, al. (2007), V_4700_LC12395_Wong et al. (2007) V_2872, V_2873, V_2874, V_2875, V_3804, V_3805, V_3806, V_4694, V_4695, V_4696, V_4697, V_4698, V_4699, V_4700, V_5599, V_5600, V_6875, V_6876, V_6877, V_8190, V_8655, V_8656, V_8657, V_8658, V_9158, V_9159, V_9160, V_9161, V_9162, V_9643, V_10330, V_10331, V_10332, V_10333, V_23388
10 q23.1 82676288 85859115 12% NRG3 V_4705_LC12506_Wong et al. (2007) V_2882, V_2883, V_2884, V_4705, V_6889, V_7823, V_8664, V_9166, V_9644, V_10336, V_10337, V_22723, V_23393
10 q23.1 86791534 87863547 10% GRID1 10 q23.2-q23.31 89257782 90864834 12% MINPP1, PAPSS2, ATAD1, PTEN, RNLS, LIPJ, LIPF, LIPK, LIPN, LIPM, ANKRD22, STAMBPL1, ACTA2, FAS V_4707_LC12530_Wong et al. (2007), V_4708_LC12531_Wong et al. (2007) V_2885, V_3815, V_3816, V_4707, V_4708
10 q25.1 108751067 110325960 12% SORCS1 V_2890, V_9168
10 q25.2 112516987 114610484 10% RBM20, PDCD4, SHOC2, ADRA2A, GPAM, TECTB, ACSL5, ZDHHC6, VTI1A hsa-mir-548e V_0766_LC12664_Sharp et al. (2005), V_4712_LC12658_Wong et al. (2007) V_0766, V_4712, V_5612, V_5613, V_22547, V_22645
10 q26.3 134463226 134720700 10% INPP5A, NKX6-2, C10orf92, C10orf93 V_4718_LC12807_Wong et al. (2007), V_4719_LC12807_Wong et al. (2007), V_4720_LC12807_Wong et al. (2007) V_2895, V_3828, V_3829, V_4718, V_4719, V_4720, V_8262, V_8669, V_9646, V_23382
11 p15.5-p15.4 1629831 3226177 12% KRTAP5-3, KRTAP5-5, KRTAP5-6, CTSD, SYT8, TNNI2, LSP1, C11orf89, TNNT3, MRPL23, IGF2, INS, IGF2AS, hsa-mir-675, hsa-mir-483 V_4730_LC12916_Wong et al. (2007) V_0410, V_0411, V_0412, V_3832, V_3833, TH, ASCL2, C11orf21, TSPAN32, CD81, TSSC4, TRPM5, KCNQ1, CDKN1C, SLC22A18, PHLDA2, NAP1L4, CARS, V_4730, V_6911, V_6914, V_22895, OSBPL5 V_23215, V_29453, V_29461, V_29472, V_29473
11 p15.4-q12.1 4124274 59069405 36% RRM1, OR52B4, TRIM21, OR52K2, OR52K3P, OR52K1, OR52M1, C11orf40, OR52I2, OR52I1, TRIM68, OR51D1, hsa-mir-302e, hsa-mir-610, hsa-mir-129-2, hsa-mir-130a V_0143_LC12968_Iafrate et al. (2004), V_0144_LC12977_Iafrate et al. (2004), V_0145_LC13078_Iafrate et al. V_0143, V_0144, V_0145, V_0147, V_0148, OR51E1, OR51E2, OR51C1P, MMP26, OR51F1, OR52R1, OR51F2, OR51S1, OR51H1P, OR51T1, OR51A6P, (2004), V_0147_LC13187_Iafrate et al. (2004), V_0148_LC13223_Iafrate et al. (2004), V_0149_LC13233_Iafrate et V_0149, V_0308, V_0413, V_0414, V_0415, OR51A7, OR51G2, OR51G1, OR51A4, OR51A2, OR51L1, OR52J3, OR52E2, OR52A4, OR52A5, OR52A1, al. (2004), V_0767_LC12925_Sharp et al. (2005), V_0768_LC13233_Sharp et al. (2005), V_2163_LC12925_Locke V_0416, V_0417, V_0418, V_0419, V_0767, OR51V1, HBB, HBG1, HBG2, HBE1, OR51B4, OR51B5, OR51B2, OR51B6, OR51M1, OR51J1, OR51Q1, OR51I1, et al. (2006), V_2164_LC12925_Locke et al. (2006), V_2165_LC12997_Locke et al. (2006), V_0768, V_1235, V_1236, V_1237, V_1238, OR51I2, OR52D1, UBQLN3, UBQLNL, OR52H1, OR52B6, TRIM34, TRIM5, TRIM22, OR56B1, OR52N4, OR52N5, V_2166_LC13021_Locke et al. (2006), V_2167_LC13212_Locke et al. (2006), V_2168_LC13233_Locke et al. V_1239, V_1240, V_1241, V_1242, V_1243, OR52N1, OR52N2, OR52E6, OR52E8, OR52E4, OR52E5, OR56A3, OR52L1, OR56A4, OR56A1, OR52L2P, (2006), V_4731_LC12993_Wong et al. (2007), V_4732_LC13002_Wong et al. (2007), V_4733_LC13087_Wong et V_1244, V_1245, V_1888, V_1889, V_1890, OR56B4, OR52W1, C11orf42, FAM160A2, CNGA4, CCKBR, PRKCDBP, SMPD1, APBB1, HPX, TRIM3, ARFIP2, al. (2007), V_4734_LC13090_Wong et al. (2007), V_4735_LC13093_Wong et al. (2007), V_4736_LC13107_Wong V_2163, V_2164, V_2165, V_2166, V_2167, FXC1, DNHD1, RRP8, ILK, TAF10, TPP1, DCHS1, MRPL17, OR2AG2, OR2AG1, OR6A2, OR10A5, OR10A2, et al. (2007), V_4737_LC13107_Wong et al. (2007), V_4738_LC13143_Wong et al. (2007), V_2168, V_2898, V_2899, V_2900, V_2901, OR10A4, OR2D2, OR2D3, ZNF215, ZNF214, NLRP14, RBMXL2, SYT9, OLFML1, PPFIBP2, CYB5R2, OVCH2, V_4739_LC13153_Wong et al. (2007), V_4740_LC13164_Wong et al. (2007), V_4741_LC13180_Wong et al. V_2902, V_2903, V_2904, V_2905, V_2906, OR10AB1P, OR5P2, OR5P3, OR10A6, OR10A3, NLRP10, EIF3F, TUB, RIC3, LMO1, STK33, TRIM66, RPL27A, (2007), V_4742_LC13206_Wong et al. (2007), V_4743_LC13212_Wong et al. (2007), V_4744_LC13225_Wong et V_2907, V_2908, V_2909, V_2910, V_2911, ST5, C11orf17, C11orf16, ASCL3, TMEM9B, NRIP3, SCUBE2, DENND5A, TMEM41B, IPO7, ZNF143, WEE1, al. (2007), V_4745_LC13231_Wong et al. (2007), V_5013_LC13187_Wong et al. (2007) V_2912, V_2913, V_2914, V_2915, V_2916, SWAP70, SBF2, ADM, AMPD3, RNF141, LYVE1, MRVI1, CTR9, EIF4G2, ZBED5, GALNTL4, USP47, DKK3, V_2917, V_2918, V_2919, V_2920, V_2921, MICAL2, MICALCL, PARVA, TEAD1, RASSF10, ARNTL, B V_2922, V_2923, V_2924, V_2925, V_2926, V_2927, V_2928, V_3834, V_3835, V_3836, V_3837, V_3838, V_3839, V_3840, V_3841, V_3842, V_3843, V_3844, V_3845, V_3846, V_3847, V_3848, V_3849, V_3850, V_3851, V_3852, V_3853, V_4731, V_4732, V_4733, V_4734, V_4735, V_4736, V_4737, V_4738, V_4739, V_4740, V_4741, V_4742, V_4743, V_4744, V_4745, V_5013, V_5274, V_5419, V_5420, V_5421, V_5618, V_5619, V_5620, V_5621, V_5622, V_5623, V_5624, V_5625, V_5626, V_5627, V_5628, V_5629, V_6902, V_6908, V_6909, V_6910, V_6913, V_6916, V_6917, V_6918, V_6919, V_6920, V_6922, V_6923, V_6924, V_69
11 q13.4-q25 74761987 134927296 34% OR2AT4, SLCO2B1, ARRB1, RPS3, KLHL35, GDPD5, SERPINH1, MAP6, MOGAT2, DGAT2, UVRAG, WNT11, hsa-mir-326, hsa-mir-708, hsa-mir-1261, hsa-mir-1304, hsa-mir-548l, hsa-mir-34b, hsa- V_0151_LC13373_Iafrate et al. (2004), V_0152_LC13403_Iafrate et al. (2004), V_0154_LC13475_Iafrate et al. V_0151, V_0152, V_0154, V_0155, V_0156, PRKRIR, C11orf30, LRRC32, GUCY2E, TSKU, ACER3, B3GNT6, CAPN5, MYO7A, GDPD4, PAK1, AQP11, mir-34c, hsa-mir-125b-1, hsa-let-7a-2, hsa-mir-100 (2004), V_0155_LC13522_Iafrate et al. (2004), V_0156_LC13530_Iafrate et al. (2004), V_0158_LC13592_Iafrate et V_0158, V_0159, V_0309, V_0422, V_0423, CLNS1A, RSF1, C11orf67, INTS4, KCTD14, THRSP, NDUFC2, ALG8, KCTD21, USP35, GAB2, ZNF75C, NARS2, al. (2004), V_0159_LC13605_Iafrate et al. (2004), V_0777_LC13377_Sharp et al. (2005), V_2184_LC13377_Locke V_0777, V_0977, V_0978, V_1492, V_2184, ODZ4, RPS28, FAM181B, PRCP, C11orf82, RAB30, PCF11, ANKRD42, CCDC90B, DLG2, TMEM126B, et al. (2006), V_4727_LC13373_Wong et al. (2007), V_4757_LC13394_Wong et al. (2007), V_2933, V_2934, V_2935, V_2936, V_2937, TMEM126A, CREBZF, CCDC89, SYTL2, CCDC83, PICALM, EED, C11orf73, CCDC81, ME3, PRSS23, FZD4, V_4758_LC13426_Wong et al. (2007), V_4759_LC13448_Wong et al. (2007), V_4760_LC13485_Wong et al. V_2938, V_2939, V_2940, V_2941, V_2942, TMEM135, RAB38, CTSC, GRM5, TYR, NOX4, FOLH1B, TRIM77, UBTFL2, TRIM49, TRIM64, TRIM53, UBTFL1, (2007), V_4761_LC13567_Wong et al. (2007), V_4763_LC13589_Wong et al. (2007), V_4764_LC13705_Wong et V_2943, V_2944, V_2945, V_2946, V_2947, NAALAD2, CHORDC1, FAT3, MTNR1B, SLC36A4, CCDC67, C11orf75, KIAA1731, TAF1D, C11orf54, MED17, al. (2007), V_4991_LC13460_Wong et al. (2007), V_5037_LC13656_Wong et al. (2007) V_2948, V_2949, V_2950, V_2951, V_2952, C11orf90, HEPHL1, PANX1, FOLR4, GPR83, MRE11A, ANKRD49, FUT4, PIWIL4, AMOTL1, CWC15, KDM4D, V_2953, V_2954, V_2955, V_2956, V_2957, SFRS2B, ENDOD1, SESN3, FAM76B, CEP57, MTMR2, MAML2, CCDC82, JRKL, CNTN5, TMEM133, PGR, V_2958, V_2959, V_2960, V_2961, V_2962, TRPC6, ANGPTL5, KIAA1377, C11orf70, YAP1, BIRC3, BIRC2, TMEM123, MMP7, MMP20, MMP27, MMP8, V_2963, V_2964, V_3859, V_3860, V_3861, MMP10, MMP1, MMP3, MMP12, MMP13, DCUN1D5, DYNC2H1, PDGFD, DDI1, CASP12, CASP4, CASP5, CASP1, V_3862, V_3863, V_3864, V_3865, V_3866, CARD16, CARD18, GRIA4, KIAA1826, KBTBD3, AASDHPPT, GUCY1A2, CWF19L2, ALKBH8, ELMOD1, SLN, V_3867, V_3868, V_3869, V_3870, V_4727, SLC35F2, RAB39, CUL5, ACAT1, NPAT, ATM, C11orf65, V_4757, V_4758, V_4759, V_4760, V_4761, V_4763, V_4764, V_4991, V_5037, V_5277, V_5278, V_5279, V_5280, V_5424, V_5635, V_5636, V_5637, V_5638, V_5639, V_5640, V_5641, V_5642, V_5643, V_5644, V_5645, V_5646, V_5647, V_5648, V_5649, V_5650, V_5651, V_5652, V_6895, V_6896, V_6897, V_6898, V_6899, V_6900, V_6901, V_6903, V_6904, V_6905, V_6906, V_6907, V_6942, V_6943, V_6944, V_6945, V_6947, V_6949, V_6950, V_6951, V_6952, V_6955, V_6957, V_7817, V_7867, V_7892, V_7901, V_7918, V_7990, V_8170, V_8187, V_8211, V_8263, V_8693, V_8694, V_8695, V_8696, V_8697, V_8698, V_8699, V_87 Supplementary Table 1 Page 13
12 q21.1-q22 75361462 93273956 20% KCNC2, CAPS2, GLIPR1L1, GLIPR1L2, GLIPR1, KRR1, PHLDA1, NAP1L1, BBS10, OSBPL8, CSRP2, E2F7, hsa-mir-1252, hsa-mir-617, hsa-mir-618 V_0165_LC14278_Iafrate et al. (2004), V_4774_LC14229_Wong et al. (2007), V_4782_LC14235_Wong et al. V_0165, V_0432, V_0433, V_1262, V_1263, NAV3, SYT1, PAWR, C12orf64, PTPRQ, MYF6, MYF5, LIN7A, ACSS3, PPFIA2, CCDC59, C12orf26, TMTC2, (2007), V_4783_LC14250_Wong et al. (2007), V_4784_LC14261_Wong et al. (2007), V_4785_LC14298_Wong et V_1264, V_1265, V_1266, V_1920, V_1921, SLC6A15, TSPAN19, LRRIQ1, ALX1, RASSF9, NTS, MGAT4C, C12orf50, C12orf29, CEP290, TMTC3, KITLG, al. (2007) V_1922, V_1923, V_1924, V_2994, V_2995, DUSP6, WDR51B, ATP2B1, C12orf37, C12orf12, EPYC, KERA, LUM, DCN, BTG1, CLLU1OS, CLLU1, C12orf74, V_3896, V_3897, V_4774, V_4782, V_4783, PLEKHG7, EEA1 V_4784, V_4785, V_5678, V_5679, V_5680, V_5681, V_6992, V_6993, V_6994, V_6995, V_7813, V_7943, V_7945, V_8007, V_9211, V_9212, V_10402, V_10403, V_23298, V_29441, V_29445
13 q12.11-q12.12 20904235 23222382 10% CRYL1, IFT88, IL17D, N6AMT2, XPO4, LATS2, SAP18, C13orf3, MRP63, ZDHHC20, EFHA1, FGF9 V_4797_LC14674_Wong et al. (2007), V_4899_LC14682_Wong et al. (2007) V_4797, V_4899, V_5314, V_5316, V_5317, V_8180, V_8745, V_8746, V_9216, V_9707, V_10412
13 q12.12-q34 23256529 115074090 28% SGCG, SACS, TNFRSF19, MIPEP, SPATA13, PARP4, ATP12A, RNF17, CENPJ, TPTE2P1, PABPC3, FAM123A, hsa-mir-320d-1, hsa-mir-621, hsa-mir-16-1, hsa-mir-15a, hsa-mir-622, hsa-mir-17, hsa- V_0168_LC14853_Iafrate et al. (2004), V_0169_LC14892_Iafrate et al. (2004), V_0170_LC14945_Iafrate et al. V_0168, V_0169, V_0170, V_0171, V_0172, MTMR6, NUPL1, ATP8A2, SHISA2, RNF6, CDK8, WASF3, GPR12, USP12, RPL21, RASL11A, GTF3A, MTIF3, mir-18a, hsa-mir-19a, hsa-mir-20a, hsa-mir-19b-1, hsa-mir-92a-1, hsa-mir-623, hsa-mir- (2004), V_0171_LC15037_Iafrate et al. (2004), V_0172_LC15055_Iafrate et al. (2004), V_2173_LC14935_Locke et V_0312, V_0313, V_0314, V_0315, V_0361, LNX2, POLR1D, GSX1, PDX1, ATP5EP2, CDX2, PRHOXNB, FLT3, PAN3, FLT1, POMP, SLC46A3, KIAA0774, 1267 al. (2006), V_4480_LC14964_Wong et al. (2007), V_4798_LC14797_Wong et al. (2007), V_4799_LC14805_Wong V_0974, V_1275, V_1276, V_1277, V_1278, SLC7A1, UBL3, KATNAL1, HMGB1, USPL1, ALOX5AP, C13orf33, C13orf26, HSPH1, B3GALTL, RXFP2, FRY, et al. (2007), V_4800_LC14821_Wong et al. (2007), V_4801_LC14824_Wong et al. (2007), V_1279, V_1280, V_1511, V_1512, V_1513, BRCA2, N4BP2L1, N4BP2L2, PDS5B, KL, STARD13, RFC3, NBEA, MAB21L1, DCLK1, C13orf38, SPG20, CCNA1, V_4802_LC14832_Wong et al. (2007), V_4803_LC14849_Wong et al. (2007), V_4804_LC14867_Wong et al. V_1514, V_1515, V_1516, V_1943, V_1944, C13orf36, RFXAP, SMAD9, ALG5, EXOSC8, FAM48A, CSNK1A1L, POSTN, TRPC4, UFM1, FREM2, STOML3, (2007), V_4805_LC14892_Wong et al. (2007), V_4806_LC14911_Wong et al. (2007), V_4807_LC14925_Wong et V_1945, V_1946, V_1947, V_1948, V_1949, C13orf23, NHLRC3, LHFP, COG6, FOXO1, MRPS31, SLC25A15, SUGT1L1, ELF1, WBP4, KBTBD6, KBTBD7, al. (2007), V_4808_LC14946_Wong et al. (2007), V_4809_LC14956_Wong et al. (2007), V_4810_LC14976_Wong V_1950, V_2173, V_3006, V_3007, V_3008, MTRF1, NARG1L, C13orf15, KIAA0564, DGKH, AKAP11, TNFSF11, C13orf30, EPSTI1, DNAJC15, ENOX1, et al. (2007), V_4811_LC14979_Wong et al. (2007), V_4812_LC15022_Wong et al. (2007), V_3009, V_3010, V_3011, V_3012, V_3013, CCDC122, C13orf31, SERP2, TSC22D1, NUFIP1, KIAA1704, GTF2F2, KCTD4, TPT1, SLC25A30, COG3, SPERT, V_4813_LC15063_Wong et al. (2007), V_4814_LC15122_Wong et al. (2007), V_4815_LC15123_Wong et al. V_3014, V_3015, V_3016, V_3017, V_3018, SIAH3, ZC3H13, CPB2, LCP1, LRRC63, C13orf18, LRCH1, ESD, HTR2A, SUCLA2, NUDT15, MED4, ITM2B, RB1, (2007), V_4816_LC15155_Wong et al. (2007), V_4817_LC15210_Wong et al. (2007), V_4818_LC15212_Wong et V_3019, V_3020, V_3021, V_3022, V_3023, P2RY5, RCBTB2, CYSLTR2, FNDC3A, MLNR, CDADC1, CAB39L, SETDB2, PHF11, RCBTB1, ARL11, EBPL, al. (2007), V_4819_LC15248_Wong et al. (2007), V_4820_LC15248_Wong et al. (2007), V_4899_LC14682_Wong V_3024, V_3025, V_3026, V_3027, V_3028, KPNA3, C13orf1, TRIM13, KCNRG, DLEU1, RNASEH2B, et al. (2007), V_0361_LC15215_Shaw-Smith et al. (2004) V_3029, V_3030, V_3031, V_3032, V_3033, V_3034, V_3035, V_3906, V_3907, V_3908, V_3909, V_3910, V_3911, V_3912, V_3913, V_3914, V_3915, V_3916, V_3917, V_3918, V_3919, V_3920, V_3921, V_3922, V_3923, V_3924, V_3925, V_3926, V_3927, V_3928, V_4480, V_4798, V_4799, V_4800, V_4801, V_4802, V_4803, V_4804, V_4805, V_4806, V_4807, V_4808, V_4809, V_4810, V_4811, V_4812, V_4813, V_4814, V_4815, V_4816, V_4817, V_4818, V_4819, V_4820, V_4899, V_5315, V_5317, V_5426, V_5427, V_5428, V_5429, V_5702, V_5703, V_5704, V_5705, V_5706, V_5707, V_5708, V_5709, V_5710, V_5711, V_5712, V_5713, V_5714, V_5715, V_5716, V_5717, V_57
14 q11.2 19968167 20116905 20% V_8183 15 q11.2-q21.3 20094045 59011092 22% VSIG7, BCL8, OR11K1P, OR4M2, OR4N4, VSIG6, TUBGCP5, CYFIP1, NIPA2, NIPA1, WHAMML1, GOLGA9P, hsa-mir-1268, hsa-mir-211, hsa-mir-1233, hsa-mir-1233, hsa-mir-626, hsa-mir-627, hsa- V_0183_LC16121_Iafrate et al. (2004), V_0185_LC16139_Iafrate et al. (2004), V_0186_LC16139_Iafrate et al. V_0183, V_0185, V_0186, V_0187, V_0188, HERC2P2, GOLGA8E, MKRN3, NDN, C15orf2, SNRPN, SNURF, C15orf49, UBE3A, ATP10A, GABRB3, GABRG3, mir-1282, hsa-mir-147b, hsa-mir-1266, hsa-mir-1300, hsa-mir-628 (2004), V_0187_LC16139_Iafrate et al. (2004), V_0188_LC16238_Iafrate et al. (2004), V_0778_LC16139_Sharp et V_0318, V_0319, V_0320, V_0321, V_0322, OCA2, HERC2, GOLGA8F, GOLGA8G, HERC2P2, APBA2, NDNL2, TJP1, FAM7A3, CHRFAM7A, FAM7A2, al. (2005), V_0779_LC16139_Sharp et al. (2005), V_0780_LC16139_Sharp et al. (2005), V_0781_LC16139_Sharp V_0352, V_0353, V_0445, V_0446, V_0447, ARHGAP11B, MTMR15, MTMR10, TRPM1, KLF13, OTUD7A, CHRNA7, FAM7A1, ARHGAP11A, SCG5, GREM1, et al. (2005), V_0782_LC16139_Sharp et al. (2005), V_0783_LC16139_Sharp et al. (2005), V_0448, V_0449, V_0450, V_0451, V_0452, FMN1, TMCO5B, RYR3, AVEN, CHRM5, C15orf24, PGBD4, C15orf29, TMEM85, SLC12A6, NOP10, C15orf55, V_0784_LC16139_Sharp et al. (2005), V_0785_LC16202_Sharp et al. (2005), V_2183_LC16090_Locke et al. V_0453, V_0454, V_0455, V_0456, V_0778, LPCAT4, GOLGA8A, GOLGA8B, GJD2, ACTC1, AQR, ZNF770, ATPBD4, C15orf41, MEIS2, TMCO5A, SPRED1, (2006), V_2185_LC16139_Locke et al. (2006), V_2186_LC16139_Locke et al. (2006), V_2187_LC16139_Locke et V_0779, V_0780, V_0781, V_0782, V_0783, FAM98B, RASGRP1, C15orf53, C15orf54, THBS1, FSIP1, GPR176, EIF2AK4, SRP14, BMF, BUB1B, PAK6, al. (2006), V_2188_LC16139_Locke et al. (2006), V_2189_LC16139_Locke et al. (2006), V_2190_LC16139_Locke V_0784, V_0785, V_1281, V_1282, V_1517, C15orf56, PLCB2, C15orf52, DISP2, C15orf23, IVD, BAHD1, CHST14, C15orf57, RPUSD2, CASC5, RAD51, et al. (2006), V_2191_LC16139_Locke et al. (2006), V_2192_LC16139_Locke et al. (2006), V_1958, V_1959, V_1960, V_1961, V_2183, FAM82A2, GCHFR, DNAJC17, C15orf62, ZFYVE19, PPP1R14D, SPINT1, RHOV, VPS18, DLL4, CHAC1, INO80, V_2193_LC16139_Locke et al. (2006), V_4874_LC16090_Wong et al. (2007), V_4875_LC16090_Wong et al. V_2185, V_2186, V_2187, V_2188, V_2189, FAM92A2, EXD1, OIP5, NUSAP1, NDUFAF1, RTF1, ITPKA, LTK, RPAP1, TYRO3, MGA, MAPKBP1, JMJD7, (2007), V_4876_LC16139_Wong et al. (2007), V_4877_LC16090_Wong et al. (2007), V_4878_LC16090_Wong et V_2190, V_2191, V_2192, V_2193, V_3070, SPTBN5, EHD4, PLA2G4E, PLA2G4D, PLA2G4F, VPS39, TMEM87A, GANC, CAPN3, ZFP106, SNAP23, LRRC57, al. (2007), V_4879_LC16090_Wong et al. (2007), V_4880_LC16090_Wong et al. (2007), V_4881_LC16090_Wong V_3071, V_3072, V_3073, V_3074, V_3075, HAUS2, STARD9, CDAN1, TTBK2, UBR1, TMEM62, CCNDBP1, EPB42, TGM5, TGM7, LCMT2, ADAL, ZSCAN29, et al. (2007), V_4882_LC16139_Wong et al. (2007), V_488 V_3076, V_3077, V_3078, V_3079, V_3080, TUBGCP4, TP53BP1, MAP1A, HISPPD2A, CKMT1B, CKM V_3081, V_3082, V_3083, V_3951, V_3952, V_3953, V_3954, V_3955, V_3956, V_3957, V_3958, V_3959, V_3960, V_3961, V_3962, V_3963, V_4874, V_4875, V_4876, V_4877, V_4878, V_4879, V_4880, V_4881, V_4882, V_4883, V_4884, V_4885, V_4886, V_4887, V_4888, V_4889, V_4890, V_4891, V_4892, V_4893, V_4894, V_4895, V_4896, V_4897, V_4898, V_4900, V_4901, V_4902, V_4903, V_5323, V_5324, V_5325, V_5772, V_5773, V_5774, V_5775, V_5776, V_5777, V_5778, V_5779, V_5780, V_5781, V_5782, V_5783, V_5784, V_5785, V_5786, V_7046, V_7047, V_7048, V_7049, V_7050, V_7051, V_7052, V_7053, V_7054, V_70
15 q22.2 59698254 63012093 16% FAM81A, GCNT3, GTF2A2, BNIP2, FOXB1, ANXA2, NARG2, RORA, VPS13C, FAM148A, FAM148B, TLN2 V_5787, V_5788, V_5789, V_9746
15 q22.31-q23 66874355 70314354 10% SMAD6, SMAD3, IQCH, C15orf61, MAP2K5, LBXCOR1, PIAS1, CALML4, CLN6, FEM1B, ITGA11, CORO2B, V_2194_LC16374_Locke et al. (2006), V_4904_LC16360_Wong et al. (2007) V_2194, V_3085, V_3966, V_4904, V_5793, ANP32A, NOX5, SPESP1, GLCE, PAQR5, KIF23, RPLP1 V_5794, V_7070, V_9747, V_22783, V_23120
15 q23-q24.2 70688533 75259056 14% UACA, LARP6, THAP10, LRRC49, THSD4, MYO9A, SENP8, GRAMD2, PKM2, PARP6, BRUNOL6, HEXA, hsa-mir-630 V_0189_LC16389_Iafrate et al. (2004), V_2196_LC16398_Locke et al. (2006), V_4905_LC16412_Wong et al. V_0189, V_0356, V_0458, V_0459, V_2196, C15orf34, TMEM202, ARIH1, HIGD2B, BBS4, ADPGK, NEO1, HCN4, C15orf60, NPTN, CD276, C15orf59, (2007) V_3967, V_3968, V_3969, V_4905, V_5795, TBC1D21, LOXL1, STOML1, PML, DNM1P33, GOLGA6, ISLR2, ISLR, STRA6, CCDC33, CYP11A1, SEMA7A, V_5796, V_7071, V_9748, V_9749, V_23501 UBL7, ARID3B, CLK3, EDC3, CYP1A1, CYP1A2, CSK, LMAN1L, CPLX3, ULK3, SCAMP2, MPI, C15orf17, COX5A, RPP25
15 q24.2-q26.2 75677798 97593474 18% SIN3A, PTPN9, SNUPN, IMP3, SNX33, CSPG4, ODF3L1, DNM1P35, GOLGA6B, UBE2Q2, FBXO22, NRG4, hsa-mir-1827, hsa-mir-184, hsa-mir-549, hsa-mir-1276, hsa-mir-1179, hsa-mir-7-2, hsa- V_0190_LC16450_Iafrate et al. (2004), V_0192_LC16541_Iafrate et al. (2004), V_0787_LC16438_Sharp et al. V_0190, V_0192, V_0460, V_0461, V_0462, C15orf27, ETFA, ISL2, SCAPER, RCN2, PSTPIP1, TSPAN3, HMG20A, LINGO1, TBC1D2B, SH2D7, CIB2, IDH3A, mir-9-3, hsa-mir-1469 (2005), V_0788_LC16450_Sharp et al. (2005), V_0789_LC16450_Sharp et al. (2005), V_0790_LC16456_Sharp et V_0463, V_0464, V_0465, V_0466, V_0467, ACSBG1, DNAJA4, WDR61, CRABP1, IREB2, AGPHD1, PSMA4, CHRNA5, CHRNA3, CHRNB4, ADAMTS7, al. (2005), V_0791_LC16456_Sharp et al. (2005), V_0792_LC16456_Sharp et al. (2005), V_2197_LC16450_Locke V_0468, V_0469, V_0470, V_0471, V_0472, MORF4L1, CTSH, RASGRF1, ANKRD34C, TMED3, KIAA1024, MTHFS, ST20, C15orf37, BCL2A1, ZFAND6, FAH, et al. (2006), V_2198_LC16456_Locke et al. (2006), V_2199_LC16456_Locke et al. (2006), V_0473, V_0474, V_0787, V_0788, V_0789, ARNT2, FAM108C1, KIAA1199, MESDC2, MESDC1, C15orf26, IL16, STARD5, TMC3, MEX3B, EFTUD1, V_2200_LC16456_Locke et al. (2006), V_4906_LC16417_Wong et al. (2007), V_4907_LC16456_Wong et al. V_0790, V_0791, V_0792, V_2197, V_2198, FAM154B, RPS17, CPEB1, AP3B2, FSD2, WHAMM, HOMER2, FAM103A1, C15orf40, BTBD1, TM6SF1, BNC1, (2007), V_4908_LC16467_Wong et al. (2007), V_4909_LC16491_Wong et al. (2007), V_4910_LC16491_Wong et V_2199, V_2200, V_3086, V_3087, V_3088, SH3GL3, ADAMTSL3, ZSCAN2, SCAND2, NMB, SEC11A, ZNF592, ALPK3, SLC28A1, PDE8A, AKAP13, KLHL25, al. (2007), V_4911_LC16537_Wong et al. (2007) V_3089, V_3090, V_3091, V_3092, V_3093, AGBL1, NTRK3, MRPL46, MRPS11, DET1, AEN, ISG20, ACAN, HAPLN3, MFGE8, ABHD2, RLBP1, FANCI, POLG, V_3094, V_3095, V_3096, V_3097, V_3970, RHCG, C15orf42, KIF7, PLIN, PEX11A, WDR93, MESP1, MESP2, ANPEP, C15orf38, ZNF710, IDH2, CIB1, V_3971, V_3972, V_3973, V_3974, V_3975, C15orf58, TTLL13, NGRN, GABARAPL3, ZNF774, IQGAP1, CRTC3, BLM, FURIN, FES, MAN2A2, UNC45A, V_3976, V_3977, V_3978, V_3979, V_3980, HDDC3, RCCD1, PRC1, VPS33B, SV2B, SLCO3A1, ST8SIA2, C15orf32, FAM174B, CHD2, RGMA, MCTP2, V_4906, V_4907, V_4908, V_4909, V_4910, NR2F2, FAM149B2, SPATA8 V_4911, V_5326, V_5797, V_5798, V_5799, V_5800, V_5801, V_5802, V_5803, V_5804, V_5805, V_5806, V_5807, V_5808, V_5809, V_7073, V_7074, V_7075, V_7076, V_7077, V_7078, V_7079, V_7080, V_7081, V_7082, V_7083, V_7882, V_8010, V_8056, V_8124, V_8217, V_8800, V_8801, V_8802, V_8803, V_8804, V_8805, V_9266, V_9267, V_9268, V_9750, V_9751, V_9752, V_9753, V_10486, V_10487, V_10488, V_10489, V_10490, V_10491, V_10492, V_23502, V_23503, V_23504, V_23505
16 p11.2-p11.1 32100780 33554984 12% IGHV2OR16-5, TP53TG3 V_0195_LC16821_Iafrate et al. (2004), V_0794_LC16821_Sharp et al. (2005), V_0795_LC16821_Sharp et al. V_0195, V_0324, V_0483, V_0794, V_0795, (2005), V_0796_LC16821_Sharp et al. (2005), V_2211_LC16821_Locke et al. (2006), V_2212_LC16821_Locke et V_0796, V_2211, V_2212, V_2213, V_2214, al. (2006), V_2213_LC16821_Locke et al. (2006), V_2214_LC16821_Locke et al. (2006), V_2215_LC16821_Locke V_2215, V_3117, V_4002, V_4440, V_4944, et al. (2006), V_4440_LC16821_Wong et al. (2007), V_4944_LC16821_Wong et al. (2007), V_4945, V_4946, V_4947, V_4948, V_7105, V_4945_LC16821_Wong et al. (2007), V_4946_LC16821_Wong et al. (2007), V_4947_LC16821_Wong et al. V_7915, V_8273, V_8825, V_22749, (2007), V_4948_LC16821_Wong et al. (2007) V_22839, V_23084, V_23089
16 p11.1-q21 33824026 63544784 28% CCNYL3, SHCBP1, VPS35, ORC6L, MYLK3, C16orf87, GPT2, DNAJA2, NETO2, ITFG1, PHKB, ABCC12, ABCC11, hsa-mir-138-2 V_0196_LC16821_Iafrate et al. (2004), V_0197_LC16821_Iafrate et al. (2004), V_0198_LC16863_Iafrate et al. V_0196, V_0197, V_0198, V_0325, V_0484, LONP2, SIAH1, N4BP1, CBLN1, C16orf78, ZNF423, TMEM188, HEATR3, PAPD5, ADCY7, BRD7, NKD1, SNX20, (2004), V_4949_LC16821_Wong et al. (2007), V_4950_LC16821_Wong et al. (2007), V_4951_LC16821_Wong et V_0485, V_0486, V_0487, V_0488, V_3118, NOD2, CYLD, SALL1, TOX3, CHD9, RBL2, AKTIP, RPGRIP1L, FTO, IRX3, IRX5, IRX6, MMP2, LPCAT2, SLC6A2, al. (2007), V_4952_LC16821_Wong et al. (2007), V_4953_LC16821_Wong et al. (2007), V_4954_LC16857_Wong V_3119, V_3120, V_3121, V_3122, V_4002, CES4, CES1, CES7, GNAO1, AMFR, NUDT21, OGFOD1, BBS2, MT4, MT3, MT2A, MT1E, MT1M, MT1A, MT1DP, et al. (2007), V_4955_LC16867_Wong et al. (2007), V_4956_LC16873_Wong et al. (2007), V_4003, V_4004, V_4005, V_4006, V_4007, MT1CP, MT1B, MT1F, MT1G, MT1H, MT1X, NUP93, SLC12A3, HERPUD1, CETP, NLRC5, CPNE2, RSPRY1, V_4957_LC16881_Wong et al. (2007), V_4958_LC16891_Wong et al. (2007), V_4959_LC16914_Wong et al. V_4008, V_4949, V_4950, V_4951, V_4952, ARL2BP, PLLP, CCL22, CX3CL1, CCL17, CIAPIN1, COQ9, POLR2C, DOK4, CCDC102A, GPR114, GPR56, (2007), V_4960_LC16916_Wong et al. (2007) V_4953, V_4954, V_4955, V_4956, V_4957, GPR97, CCDC135, KATNB1, KIFC3, CNGB1, TEPP, ZNF319, C16orf57, MMP15, C16orf80, CSNK2A2, CCDC113, V_4958, V_4959, V_4960, V_5437, V_5822, GINS3, NDRG4, SETD6, CNOT1, SLC38A7, GOT2, CDH8 V_5823, V_5824, V_5825, V_5826, V_5827, V_5828, V_5829, V_5830, V_7106, V_7107, V_7108, V_7111, V_7112, V_7114, V_7117, V_7118, V_7119, V_7120, V_7121, V_7122, V_7123, V_7858, V_8273, V_8822, V_8823, V_8824, V_8825, V_8826, V_8827, V_9277, V_9278, V_9759, V_9760, V_10504, V_10505, V_22494, V_22742, V_22780, V_22844, V_22973, V_23312, V_23313, V_23510, V_29448, V_29465, V_29466, V_29467
16 q21 63910222 66318252 12% CDH11 V_4961_LC16934_Wong et al. (2007), V_4962_LC16939_Wong et al. (2007) V_4961, V_4962, V_23512
16 q23.1-q23.3 77089151 83789051 16% MON1B, ADAMTS18, NUDT7, VAT1L, CLEC3A, WWOX, MAF, DYNLRB2, CDYL2, C16orf61, CENPN, ATMIN, V_4968_LC17023_Wong et al. (2007), V_4969_LC17043_Wong et al. (2007) V_0491, V_0840, V_1286, V_3129, V_3130, C16orf46, GCSH, PKD1L2, BCMO1, GAN, PLCG2, SDR42E1, HSD17B2, MPHOSPH6, CDH13 V_3131, V_3132, V_4968, V_4969, V_5331, V_5842, V_7132, V_7133, V_7134, V_7135, V_7136, V_8194, V_8250, V_8829, V_8830, V_8831, V_9282, V_9283, V_9766, V_10509, V_29410 Supplementary Table 1 Page 14
17 p13.1-p11.2 8820443 19030820 18% PIK3R5, NTN1, STX8, WDR16, USP43, DHRS7C, GLP2R, RCVRN, GAS7, MYH13, MYH8, MYH4, MYH1, MYH2, hsa-mir-744, hsa-mir-548h-3, hsa-mir-1288, hsa-mir-33b V_0798_LC17354_Sharp et al. (2005), V_2218_LC17354_Locke et al. (2006), V_2219_LC17388_Locke et al. V_0493, V_0494, V_0495, V_0496, V_0798, MYH3, SCO1, C17orf48, TMEM220, DNAH9, ZNF18, MAP2K4, MYOCD, ELAC2, HS3ST3A1, COX10, CDRT15, (2006), V_4989_LC17333_Wong et al. (2007), V_4990_LC17383_Wong et al. (2007), V_4992_LC17388_Wong et V_1287, V_1962, V_2218, V_2219, V_3138, HS3ST3B1, PMP22, TEKT3, FAM18B2, TRIM16, TBC1D26, ADORA2B, ZSWIM7, TTC19, NCOR1, PIGL, CENPV, al. (2007), V_4993_LC17390_Wong et al. (2007), V_4994_LC17394_Wong et al. (2007) V_3139, V_4022, V_4023, V_4024, V_4025, UBB, TRPV2, C17orf45, C17orf76, ZNF287, ZNF624, CCDC144A, KRT17P1, TNFRSF13B, MPRIP, C17orf84, V_4989, V_4990, V_4992, V_4993, V_4994, PLD6, FLCN, COPS3, NT5M, MED9, RASD1, PEMT, RAI1, SMCR5, SREBF1, TOM1L2, LRRC48, ATPAF2, V_5851, V_5852, V_5853, V_5854, V_5855, C17orf39, DRG2, MYO15A, ALKBH5, LLGL1, FLII, SMCR7, TOP3A, SMCR8, SHMT1, EVPLL, LGALS9C, V_7141, V_7143, V_7145, V_7177, V_7941, CCDC144B, TBC1D28, TRIM16L, FBXW10, FAM18B, PRPSAP2, SLC5A10, FAM83G, GRAP V_8236, V_9284, V_10511, V_10512, V_22746, V_23029, V_23517, V_23519, V_23520
18 q11.2-q23 21338697 77875127 36% LAMA3, TTC39C, CABYR, OSBPL1A, IMPACT, HRH4, ZNF521, SS18, PSMA8, TAF4B, KCTD1, AQP4, CHST9, hsa-mir-320c-2, hsa-mir-187, hsa-mir-1539, hsa-mir-122 V_0216_LC18106_Iafrate et al. (2004), V_0217_LC18181_Iafrate et al. (2004), V_0218_LC18301_Iafrate et al. V_0216, V_0217, V_0218, V_0506, V_1293, CDH2, DSC3, DSC2, DSC1, DSG1, DSG4, DSG3, DSG2, TTR, B4GALT6, MCART2, KIAA1012, RNF125, RNF138, (2004), V_5047_LC18053_Wong et al. (2007), V_5048_LC18073_Wong et al. (2007), V_5049_LC18082_Wong et V_1294, V_1295, V_1296, V_1297, V_1298, MEP1B, FAM59A, WBP11P1, KLHL14, C18orf34, ASXL3, NOL4, DTNA, MAPRE2, ZNF397, ZNF397OS, ZNF24, al. (2007), V_5050_LC18106_Wong et al. (2007), V_5052_LC18144_Wong et al. (2007), V_5053_LC18156_Wong V_1519, V_1967, V_1968, V_1969, V_1970, ZNF396, INO80C, GALNT1, C18orf21, RPRD1A, SLC39A6, ELP2, MOCOS, FHOD3, C18orf10, KIAA1328, et al. (2007), V_5054_LC18222_Wong et al. (2007), V_5055_LC18222_Wong et al. (2007), V_1971, V_1972, V_1973, V_1974, V_1975, BRUNOL4, PIK3C3, RIT2, SYT4, SETBP1, SLC14A2, SLC14A1, SIGLEC15, KIAA1632, PSTPIP2, ATP5A1, V_5056_LC18250_Wong et al. (2007), V_5057_LC18279_Wong et al. (2007), V_5058_LC18374_Wong et al. V_1976, V_1977, V_1978, V_1979, V_1980, HAUS1, C18orf25, RNF165, LOXHD1, ST8SIA5, PIAS2, KATNAL2, TCEB3CL2, TCEB3CL, TCEB3C, TCEB3B, (2007), V_5059_LC18395_Wong et al. (2007), V_5060_LC18434_Wong et al. (2007), V_5061_LC18463_Wong et V_1981, V_1982, V_1983, V_1984, V_1985, HDHD2, IER3IP1, SMAD2, ZBTB7C, C18orf12, KIAA0427, SMAD7, DYM, C18orf32, RPL17P9, LIPG, ACAA2, al. (2007), V_5062_LC18530_Wong et al. (2007), V_5064_LC18537_Wong et al. (2007) V_1986, V_1987, V_1988, V_1989, V_3161, MYO5B, CCDC11, MBD1, CXXC1, C18orf24, MAPK4, MRO, ME2, ELAC1, SMAD4, MEX3C, DCC, MBD2, POLI, V_3162, V_3163, V_3164, V_3165, V_3166, STARD6, C18orf54, C18orf26, RAB27B, CCDC68, TCF4, TXNL1, WDR7, ST8SIA3, ONECUT2, FECH, NARS, V_3167, V_3168, V_3169, V_3170, V_3171, ATP8B1, ALPK2, MALT1, ZNF532, SEC11C, GRP, RAX, CPLX4, LMAN1, CCBE1, RPS26P54, PMAIP1, MC4R, V_3172, V_3173, V_3174, V_3175, V_3176, CDH20, RNF152, KIAA1468, TNFRSF11A, ZCCHC2, PHLPP, BCL2, KDSR, VPS4B, SERPINB5, SERPINB12, V_3177, V_3178, V_3179, V_4055, V_4056, SERPINB13, SERPINB4, SERPINB3, SERPINB11, SERPI V_4057, V_4058, V_4059, V_4060, V_4061, V_4062, V_4063, V_4064, V_5047, V_5048, V_5049, V_5050, V_5052, V_5053, V_5054, V_5055, V_5056, V_5057, V_5058, V_5059, V_5060, V_5061, V_5062, V_5064, V_5337, V_5441, V_5442, V_5898, V_5899, V_5900, V_5901, V_5902, V_5903, V_5904, V_5905, V_5906, V_5907, V_5908, V_5909, V_5910, V_5911, V_5912, V_5913, V_5914, V_5915, V_5916, V_5917, V_5918, V_5919, V_5920, V_5921, V_5922, V_5923, V_5924, V_5925, V_5926, V_5927, V_7181, V_7182, V_7185, V_7186, V_7187, V_7188, V_7189, V_7190, V_7821, V_7825, V_7831, V_7895, V_7896, V_7996, V_8001, V_8143, V_8285, V_8856, V_8857, V_8858, V_88
19 p13.2 8793550 8986893 10% ACTL9, OR2Z1, ZNF558, MBD3L1 V_0220_LC18794_Iafrate et al. (2004), V_5083_LC18794_Wong et al. (2007) V_0220, V_0509, V_4067, V_5083
20 p12.3-p12.1 6175936 13109513 12% BMP2, HAO1, TMX4, PLCB1, PLCB4, C20orf103, PAK7, ANKRD5, SNAP25, MKKS, C20orf94, JAG1, C20orf187, V_5122_LC19294_Wong et al. (2007), V_5123_LC19298_Wong et al. (2007), V_5124_LC19312_Wong et al. V_3206, V_3207, V_3208, V_4092, V_4093, C20orf61, BTBD3, SPTLC3 (2007), V_5125_LC19365_Wong et al. (2007) V_4094, V_4095, V_5122, V_5123, V_5124, V_5125, V_5346, V_6051, V_6052, V_6053, V_6054, V_6055, V_6056, V_6057, V_6058, V_6059, V_6060, V_8879, V_8880, V_8881, V_22761, V_23632
20 p12.1 14406701 17699290 16% MACROD2, KIF16B, SNRPB2, OTOR, PCSK2, BFSP1, DSTN, RRBP1, BANF2 V_0224_LC19418_Iafrate et al. (2004), V_5126_LC19402_Wong et al. (2007), V_5127_LC19406_Wong et al. V_0224, V_0537, V_1523, V_1993, V_1994, (2007) V_3209, V_3210, V_3211, V_3212, V_4096, V_5126, V_5127, V_5448, V_5449, V_6062, V_6063, V_6064, V_6065, V_6066, V_6067, V_6068, V_6069, V_6070, V_6071, V_7295, V_7298, V_8105, V_8882, V_9314, V_9315, V_9316, V_9317, V_9318, V_10575, V_10576, V_10577, V_10578, V_23247
22 q11.1 16181586 16422689 24% POTEH V_2007, V_8276
23 p22.33-q28 2611926 155186928 46% CD99, XG, GYG2, ARSD, ARSE, ARSH, ARSF, CXorf28, MXRA5, PRKX, NLGN4X, VCX3A, HDHD1A, STS, VCX, hsa-mir-651, hsa-mir-548f-5, hsa-mir-221, hsa-mir-222, hsa-mir-532, hsa-mir-188, hsa- V_0241_LC20771_Iafrate et al. (2004), V_0242_LC20786_Iafrate et al. (2004), V_0243_LC20866_Iafrate et al. V_0241, V_0242, V_0243, V_0244, V_0245, PNPLA4, VCX2, VCX3B, KAL1, FAM9A, FAM9B, TBL1X, GPR143, SHROOM2, WWC3, CLCN4, MID1, HCCS, mir-500, hsa-mir-362, hsa-mir-501, hsa-mir-660, hsa-mir-502, hsa-mir-98, hsa-let-7f-2, (2004), V_0244_LC20915_Iafrate et al. (2004), V_0245_LC20923_Iafrate et al. (2004), V_0246_LC20931_Iafrate et V_0246, V_0247, V_0248, V_0249, V_0250, ARHGAP6, AMELX, MSL3, FRMPD4, PRPS2, TLR7, TLR8, TMSB4X, FAM9C, ATXN3L, EGFL6, TCEANC, RAB9A, hsa-mir-1468, hsa-mir-223, hsa-mir-421, hsa-mir-374b, hsa-mir-545, hsa-mir-374a, hsa- al. (2004), V_0247_LC20945_Iafrate et al. (2004), V_0248_LC20946_Iafrate et al. (2004), V_0249_LC20974_Iafrate V_0251, V_0252, V_0253, V_0254, V_0255, TRAPPC2, OFD1, GPM6B, GEMIN8, GLRA2, FANCB, MOSPD2, ASB9, ASB11, PIGA, FIGF, PIR, BMX, ACE2, mir-325, hsa-mir-548i-4, hsa-mir-361, hsa-mir-548m, hsa-mir-652, hsa-mir-1912, hsa-mir- et al. (2004), V_0250_LC21009_Iafrate et al. (2004), V_0251_LC21010_Iafrate et al. (2004), V_0344, V_0345, V_0362, V_0363, V_0655, TMEM27, CA5BP, CA5B, ZRSR2, AP1S2, GRPR, MAGEB17, CTPS2, S100G, SYAP1, CXorf15, RBBP7, REPS2, 1298, hsa-mir-1911, hsa-mir-448, hsa-mir-1277, hsa-mir-766, hsa-mir-220a, hsa-mir- V_0252_LC21078_Iafrate et al. (2004), V_0253_LC21091_Iafrate et al. (2004), V_0254_LC21120_Iafrate et al. V_0656, V_0657, V_0658, V_0659, V_0660, NHS, SCML1, RAI2, BEND2, SCML2, CDKL5, RS1, PPEF1, PHKA2, GPR64, PDHA1, MAP3K15, SH3KBP1, 363, hsa-mir-92a-2, hsa-mir-19b-2, hsa-mir-20b, hsa-mir-106a, hsa-mir-450b, hsa-mir- (2004), V_0255_LC21142_Iafrate et al. (2004), V_0362_LC20686_Shaw-Smith et al. (2004), V_0661, V_0662, V_0663, V_0664, V_0665, CXorf23, MAP7D2, EIF1AX, RPS6KA3, CNKSR2, KLHL34, SMPX, MBTPS2, YY2, SMS, PHEX, ZNF645, DDX53, 450a-1, hsa-mir-450a-2, hsa-mir-542, hsa-mir-503, hsa-mir-424, hsa-mir-934, hsa-mir- V_0363_LC20881_Shaw-Smith et al. (2004), V_0820_LC20665_Sharp et al. (2005), V_0822_LC20844_Sharp et al. V_0666, V_0667, V_0668, V_0669, V_0670, PTCHD1, PRDX4, ACOT9, SAT1, APOO, CXorf58, KLHL15, EIF2S3, ZFX, PDK3, PCYT1B, POLA1, ARX, 504, hsa-mir-505, hsa-mir-320d-2, hsa-mir-890, hsa-mir-888, hsa-mir-892a, hsa-mir- (2005), V_0823_LC20844_Sharp et al. (2005), V_0824_LC20844_Sharp et al. (2005), V_0825_LC21225_Sharp et V_0671, V_0672, V_0673, V_0674, V_0820, MAGEB18, MAGEB6, MAGEB5, MAGEB10, WDR42B, IL1RAPL1, MAGEB2, MAGEB3, MAGEB4, MAGEB1, 892b, hsa-mir-891b, hsa-mir-891a, hsa-mir-513c, hsa-mir-513b, hsa-mir-513a-1, hsa-mir- al. (2005), V_0826_LC21120_Sharp et al. (2005), V_0827_LC21138_Sharp et al. (2005), V_0828_LC21214_Sharp V_0822, V_0823, V_0824, V_0825, V_0826, NR0B1, CXorf21, GK, MAP3K7IP3, CXorf29, FTHL17, DMD, FAM47A, TMEM47, FAM47B, MAGEB16, CXorf22, 513a-2, hsa-mir-506, hsa-mir-507, hsa-mir-508, hsa-mir-509-2, hsa-mir-509-3, hsa-mir- et al. (2005), V_2130_LC21120_Locke et al. (2006), V_2274_LC20665_Locke et al. (2006), V_0827, V_0828, V_1313, V_1533, V_1837, CXorf59, CXorf30, FAM47C, PRRG1, LANCL3, XK, CYBB, DYNLT3, CXorf27, SYTL5, SRPX, RPGR, OTC, 509-2, hsa-mir-510, hsa-mir-514-1, hsa-mir-514-2, hsa-mir-514-2, hsa-mir-224, hsa-mir- V_2275_LC20696_Locke et al. (2006), V_2276_LC20844_Locke et al. (2006), V_2277_LC20844_Locke et al. V_1838, V_1839, V_1840, V_1841, V_1842, TSPAN7, MID1IP1, BCOR, ATP6AP2, CXorf38, MED14, USP9X, DDX3X, NYX, CASK, GPR34, GPR82, MAOA, 452, hsa-mir-105-1, hsa-mir-767, hsa-mir-105-2, hsa-mir-1184, hsa-mir-1184, hsa-mir- (2006), V_2278_LC20844_Locke et al. (2006), V_2279_LC V_1843, V_1844, V_1845, V_1846, V_1847, MAOB, NDP, EFHC2, FUNDC1, DUSP21, KDM6A, CXorf3 1184 V_1848, V_1849, V_1850, V_1851, V_1852, V_1853, V_1854, V_1855, V_1856, V_1857, V_1858, V_1859, V_1860, V_1861, V_1862, V_1863, V_1864, V_1865, V_1866, V_1867, V_1868, V_1869, V_1870, V_2130, V_2274, V_2275, V_2276, V_2277, V_2278, V_2279, V_2280, V_2281, V_2282, V_3247, V_3248, V_3249, V_3250, V_3251, V_3252, V_3253, V_3254, V_3255, V_3256, V_3257, V_3258, V_3259, V_3260, V_3261, V_3262, V_3263, V_3264, V_3265, V_3266, V_3267, V_3268, V_3269, V_3270, V_3271, V_3272, V_3273, V_4142, V_4143, V_4144, V_4145, V_4146, V_4147, V_4148, V_4149, V_4150, V_4151, V_4152, V_4153, V_41
Recurrent regions of amplification (2 or more cases)
Chromosome Cytoband Start (bp) End (bp) Maximum Frequency Genes miRNAs aCGH copy number polymorphisms (CNVs) All copy number polymorphisms (CNVs)
1 p36.33-p36.31 1633798 6274893 10% CDC2L2, SLC35E2, NADK, GNB1, CALML6, TMEM52, C1orf222, KIAA1751, GABRD, PRKCZ, C1orf86, SKI, hsa-mir-551a V_0002_LC0028_Iafrate et al. (2004), V_2042_LC0028_Locke et al. (2006), V_4192_LC0040_Wong et al. (2007), V_0002, V_0378, V_2042, V_2295, V_2296, MORN1, RER1, PEX10, PLCH2, PANK4, HES5, TNFRSF14, C1orf93, MMEL1, TTC34, ACTRT2, PRDM16, V_4193_LC0040_Wong et al. (2007), V_4194_LC0040_Wong et al. (2007), V_4195_LC0040_Wong et al. (2007), V_3276, V_3277, V_3278, V_3279, V_4192, ARHGEF16, MEGF6, TPRG1L, WDR8, TP73, CCDC27, LRRC47, KIAA0562, DFFB, C1orf174, AJAP1, NPHP4, V_4196_LC0040_Wong et al. (2007), V_4197_LC0040_Wong et al. (2007), V_4198_LC0097_Wong et al. (2007), V_4193, V_4194, V_4195, V_4196, V_4197, KCNAB2, CHD5, RPL22, RNF207 V_4199_LC0100_Wong et al. (2007), V_4200_LC0104_Wong et al. (2007) V_4198, V_4199, V_4200, V_5453, V_5454, V_5455, V_5456, V_5457, V_5458, V_5459, V_5460, V_5461, V_5462, V_5463, V_6826, V_8246, V_9865, V_9866, V_9867, V_9868, V_9869, V_22925, V_29446
1 p36.31-p36.23 6765901 7832272 6% CAMTA1, VAMP3 V_4203_LC0113_Wong et al. (2007) V_2297, V_4203, V_5464
1 p36.23-p36.22 8205418 9363602 4% SLC45A1, RERE, ENO1, CA6, SLC2A7, SLC2A5, GPR157, H6PD, SPSB1 hsa-mir-34a V_0003_LC0126_Iafrate et al. (2004), V_4204_LC0118_Wong et al. (2007) V_0003, V_3280, V_4204, V_5198, V_5465, V_7995, V_8316, V_8317
1 p36.21-p36.13 13957452 17398374 8% PRDM2, C1orf196, TMEM51, C1orf195, FHAD1, EFHD2, CTRC, CELA2A, CELA2B, CASP9, DNAJC16, AGMAT, V_0005_LC0177_Iafrate et al. (2004), V_0679_LC0177_Sharp et al. (2005), V_2044_LC0177_Locke et al. (2006), V_0005, V_0380, V_0679, V_0995, V_0996, DDI2, RSC1A1, PLEKHM2, SLC25A34, TMEM82, FBLIM1, SPEN, ZBTB17, C1orf64, HSPB7, CLCNKA, CLCNKB, V_4206_LC0165_Wong et al. (2007), V_4207_LC0177_Wong et al. (2007), V_4208_LC0177_Wong et al. (2007), V_0997, V_0998, V_0999, V_1538, V_1539, FAM131C, EPHA2, ARHGEF19, C1orf224, C1orf134, C1orf89, FBXO42, C1orf144, SPATA21, NECAP2, NBPF1, V_4209_LC0177_Wong et al. (2007), V_4210_LC0177_Wong et al. (2007), V_4211_LC0177_Wong et al. (2007), V_2044, V_2299, V_2300, V_2301, V_3284, MSTP9, CROCC, MFAP2, ATP13A2, SDHB, PADI2 V_4212_LC0177_Wong et al. (2007) V_4206, V_4207, V_4208, V_4209, V_4210, V_4211, V_4212, V_5197, V_5200, V_5468, V_5469, V_5470, V_5471, V_5472, V_5473, V_6792, V_6795, V_6797, V_8153, V_8318, V_8319, V_8320, V_8321, V_9359, V_9875, V_22664, V_22889, V_23025, V_23257, V_23270, V_29478
1 p36.12-p36.11 21845981 24040403 4% ALPL, RAP1GAP, USP48, LDLRAD2, HSPG2, CELA3B, CELA3A, CDC42, WNT4, ZBTB40, EPHA8, C1QA, C1QC, V_2045_LC0219_Locke et al. (2006), V_2046_LC0230_Locke et al. (2006), V_4214_LC0213_Wong et al. (2007), V_2045, V_2046, V_3286, V_4214, V_4215, C1QB, EPHB2, KDM1, LUZP1, HTR1D, HNRNPR, ZNF436, C1orf213, TCEA3, ASAP3, E2F2, ID3, MDS2, RPL11 V_4215_LC0219_Wong et al. (2007), V_4216_LC0219_Wong et al. (2007) V_4216, V_5475, V_5476, V_5477, V_5478, V_6810, V_23355 Supplementary Table 1 Page 15
1 p36.11 25707821 27322151 4% RHCE, TMEM57, LDLRAP1, MAN1C1, SEPN1, FAM54B, C1orf135, PAQR7, STMN1, PAFAH2, EXTL1, SLC30A2, hsa-mir-1976 V_4218_LC0253_Wong et al. (2007) V_4218 TRIM63, PDIK1L, GRRP1, ZNF593, CNKSR1, CATSPER4, CCDC21, SH3BGRL3, UBXN11, CD52, AIM1L, ZNF683, LIN28, DHDDS, HMGN2, RPS6KA1, ARID1A, PIGV, ZDHHC18, SFN, GPN2, GPATCH3, NUDC, NR0B2, C1orf172
1 p35.3-p35.2 29573282 30388444 4% PTPRU 1 p34.3 36730365 37215062 4% THRAP3, C1orf113, FAM176B, STK40, LSM10, C1orf102, MRPS15, CSF3R 1 p34.3 38607855 39283639 4% V_2305, V_9881, V_23108
1 p34.3 39459158 39906861 4% AKIRIN1, NDUFS5, MACF1 1 p34.2 41088453 41698786 4% RIMS3, NFYC, KCNQ4, CITED4, CTPS, SLFNL1, SCMH1 hsa-mir-30e, hsa-mir-30c-1 V_5489, V_9360
1 q23.1 156919444 157465744 4% ARHGEF11, ETV3 V_5527, V_5528, V_22629
1 q23.1 157678264 158222375 4% FCRL2, FCRL1, CD5L, KIRREL, CD1D 2 q13 111514034 112001961 4% ACOXL, BCL2L11 V_2060_LC2134_Locke et al. (2006), V_4303_LC2134_Wong et al. (2007) V_0268, V_1595, V_2060, V_3384, V_4303, V_7227, V_9428, V_23579
2 q13 113428096 113994298 4% NT5DC4, CKAP2L, IL1A, IL1B, IL1F7, IL1F9, IL1F6, IL1F8, IL1F5, IL1F10, IL1RN, PSD4, PAX8 V_3385, V_3386
2 q13-q14.1 114394317 115640916 4% RABL2A, SLC35F5, ACTR3, DPP10 V_1034 3 q22.2 133949865 134232520 6% RYK, RPL39P5, AMOTL2, ANAPC13, CEP63 3 q24-q25.1 148789130 149076130 4% HLTF, HPS3, CP, TM4SF18 3 q26.2 168791446 169516464 4% EVI1, MYNN, LRRC34 V_0039_LC3834_Iafrate et al. (2004) V_0039, V_8244
3 q27.3-q28 187547652 189116812 4% LPP, TPRG1 hsa-mir-28 V_0564, V_1380, V_1381, V_1656, V_2488, V_2489, V_3467, V_3468, V_10027, V_7390, V_8437, V_9462, V_22667, V_23003, V_23675
3 q29 192505753 194383040 4% C3orf59, HRASLS, ATP13A5, ATP13A4, OPA1, HES1, CPN2, LRRC15, GP5, ATP13A3, TMEM44, LSG1 V_2062_LC4004_Locke et al. (2006) V_0565, V_0566, V_1068, V_1069, V_1382, V_1659, V_1660, V_1661, V_2062, V_2490, V_3469, V_3470, V_10028, V_10029, V_10030, V_10031, V_7394, V_7395, V_7396, V_9464, V_23177, V_23193, V_23234
4 p16.3 1121971 1367453 4% TMED11P, SPON2, CTBP1, C4orf42, MAEA, KIAA1530 V_23701 4 p16.3 3393681 3662419 4% RGS12, HGFAC, DOK7, LRPAP1 V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007) V_2494, V_2495, V_3477, V_4371, V_4372, V_10033, V_8442, V_22572, V_23105
5 p15.33-p15.31 1851679 9507253 6% IRX4, IRX2, C5orf38, IRX1, ADAMTS16, MED10, NSUN2, SRD5A1, POLS, ADCY2, C5orf49, FASTKD3, MTRR, V_4430_LC6506_Wong et al. (2007) V_0280, V_0968, V_1411, V_1412, V_2565, SEMA5A V_2566, V_3538, V_3539, V_3540, V_4430, V_10087, V_10088, V_10089, V_6376, V_6377, V_6378, V_7505, V_8100, V_8271, V_8479, V_23023, V_23766, V_23773, V_23774
5 p15.2 10422695 14607951 6% Mar-06, ROPN1L, ANKRD33B, DAP, CTNND2, DNAH5, TRIO, FAM105A V_2082_LC6572_Locke et al. (2006) V_0281, V_1413, V_2082, V_2568, V_3542, V_3543, V_3544, V_10091, V_10092, V_10093, V_10094, V_6379, V_7466, V_7472, V_8480, V_9014, V_22620, V_22669
5 p15.2-p15.1 14950984 16721431 4% FBXL7, Mar-11, ZNF622, FAM134B, MYO10 hsa-mir-887 V_0975, V_2569, V_2570, V_10095, V_7806, V_22887
5 p15.1-p14.3 17646891 18408628 4% V_4432_LC6634_Wong et al. (2007), V_5051_LC6639_Wong et al. (2007) V_2571, V_3545, V_4432, V_5051, V_10096, V_10097, V_10098, V_6381, V_7486, V_8012, V_9015, V_9016, V_9503, V_22938, V_23757
5 p14.3 18945015 19721772 4% CDH18 V_4433_LC6655_Wong et al. (2007) V_0976, V_3546, V_4433, V_5381, V_22853
5 p14.3-p14.2 22243351 23851269 4% CDH12, PRDM9 V_2573, V_6385, V_9017, V_23759
5 q32-q33.1 149148007 149856670 4% PPARGC1B, PDE6A, SLC26A2, TIGD6, HMGXB3, CSF1R, PDGFRB, CDX1, SLC6A7, CAMK2A, ARSI, TCOF1, V_3580 CD74, RPS14 6 q25.3-q26 160888661 161206251 4% LPAL2, LPA, PLG V_4514_LC8985_Wong et al. (2007) V_0604, V_2661, V_3648, V_4514, V_5227, V_6521, V_7542, V_8530, V_9552, V_23785
7 p22.3 962623 2376538 4% ADAP1, CYP2W1, C7orf50, GPR146, GPER, ZFAND2A, UNCX, MICALL2, INTS1, MAFK, TMEM184A, PSMG3, hsa-mir-339 V_0093_LC9158_Iafrate et al. (2004), V_4519_LC9158_Wong et al. (2007), V_4520_LC9158_Wong et al. (2007), V_0093, V_3660, V_4519, V_4520, V_4521, MAD1L1, FTSJ2, NUDT1, SNX8 V_4521_LC9158_Wong et al. (2007), V_4522_LC9158_Wong et al. (2007), V_4523_LC9158_Wong et al. (2007) V_4522, V_4523, V_6529, V_8268, V_23824
7 p22.2 3996557 4411870 4% SDK1 V_2672, V_8544, V_9043
7 p21.3 11560728 12052128 4% THSD7A V_3665, V_10177, V_7837, V_8226
7 q11.1-q11.21 61091237 61265855 8% V_4538_LC9545_Wong et al. (2007), V_4539_LC9545_Wong et al. (2007) V_3681, V_4538, V_4539, V_23844
7 q11.21 62935941 63808249 4% ZNF679 V_10190, V_5239, V_8249, V_8563, V_9572
8 p23.3-p23.2 167973 2291228 4% ZNF596, FAM87A, FBXO25, C8orf42, ERICH1, C8orf68, CLN8, ARHGEF10, KBTBD11, MYOM2 hsa-mir-596 V_0731_LC10225_Sharp et al. (2005), V_0732_LC10225_Sharp et al. (2005), V_2112_LC10225_Locke et al. V_0294, V_0627, V_0628, V_0731, V_0732, (2006), V_2113_LC10225_Locke et al. (2006), V_4276_LC10225_Wong et al. (2007), V_4575_LC10225_Wong et V_1175, V_1176, V_1177, V_1178, V_1751, al. (2007), V_4576_LC10225_Wong et al. (2007) V_1752, V_2112, V_2113, V_2723, V_2724, V_3716, V_3717, V_4276, V_4575, V_4576, V_5251, V_5252, V_5253, V_5254, V_6585, V_7676, V_7693, V_7695, V_8280, V_8587, V_8589, V_10221, V_10222, V_22590, V_22651, V_22883, V_23088, V_23867, V_23880, V_23882
8 p23.2 2625940 3000229 4% CSMD1 V_2725, V_8280, V_10223
8 p23.1 7048666 7854756 4% FAM90A3, FAM90A13, FAM90A5, FAM90A20, DEFB108P2, DEFB103A, SPAG11B, DEFB104B, DEFB106B, V_0733_LC10380_Sharp et al. (2005), V_0734_LC10380_Sharp et al. (2005), V_0735_LC10380_Sharp et al. V_0296, V_0338, V_0348, V_0354, V_0631, DEFB105B, DEFB107B, FAM90A23, FAM90A22, FAM90A15, FAM90A10, FAM90A8, FAM90A16, FAM90A9, (2005), V_0736_LC10380_Sharp et al. (2005), V_0737_LC10380_Sharp et al. (2005), V_2114_LC10380_Locke et V_0733, V_0734, V_0735, V_0736, V_0737, DEFB107A, DEFB105A, DEFB106A, DEFB104A, SPAG11A, DEFB103B, DEFB4, DEFB108P1, FAM66E al. (2006), V_2115_LC10380_Locke et al. (2006), V_2117_LC10380_Locke et al. (2006), V_2119_LC10380_Locke V_1182, V_1765, V_1766, V_2114, V_2115, et al. (2006), V_4578_LC10380_Wong et al. (2007), V_4579_LC10380_Wong et al. (2007), V_2117, V_2119, V_2732, V_3719, V_4578, V_4580_LC10380_Wong et al. (2007) V_4579, V_4580, V_6589, V_7702, V_8152, V_8212, V_8593, V_9081
8 p23.1 8764743 9244081 4% ERI1, PPP1R3B V_1443, V_2734, V_2735, V_6590, V_9594, V_22985 Supplementary Table 1 Page 16
8 p12 28912280 29647877 4% KIF13B, DUSP4 V_6602 8 p12-p11.23 36430481 37499846 4% KCNU1 V_1196, V_9091
8 p11.22 38309657 39082306 6% FGFR1, C8orf86, TACC1, PLEKHA2, HTRA4, TM2D2, ADAM9, ADAM32 V_4589_LC10531_Wong et al. (2007) V_4589 8 p11.21-q11.21 39718441 47989911 8% IDO1, C8orf4, ZMAT4, SFRP1, GOLGA7, GINS4, AGPAT6, NKX6-3, ANK1, MYST3, AP3M2, PLAT, IKBKB, POLB, hsa-mir-486 V_4590_LC10569_Wong et al. (2007) V_1466, V_1780, V_2750, V_4590, V_5255, DKK4, VDAC3, SLC20A2, C8orf40, CHRNB3, CHRNA6, THAP1, RNF170, HOOK3, FNTA, POTEA V_6612, V_6613, V_6614, V_6615, V_6616, V_7685, V_7686, V_7687, V_7688, V_7949, V_8087, V_8126, V_8134, V_9092, V_9600, V_9601, V_10250, V_10251, V_22605, V_22631, V_22743, V_22754, V_23044, V_23046, V_23873, V_23874, V_23875
8 q11.21-q23.3 48163084 113769839 16% KIAA0146, CEBPD, PRKDC, MCM4, UBE2V2, EFCAB1, SNAI2, C8orf22, SNTG1, PXDNL, PCMTD1, ST18, hsa-mir-124-2, hsa-mir-599, hsa-mir-875, hsa-mir-1273, hsa-mir-548a-3, hsa-mir-2053 V_0119_LC10711_Iafrate et al. (2004), V_0121_LC10727_Iafrate et al. (2004), V_2126_LC10727_Locke et al. V_0119, V_0121, V_0298, V_0299, V_0633, FAM150A, RB1CC1, NPBWR1, OPRK1, ATP6V1H, RGS20, TCEA1, LYPLA1, MRPL15, SOX17, RP1, XKR4, (2006), V_4591_LC10578_Wong et al. (2007), V_4592_LC10583_Wong et al. (2007), V_4593_LC10587_Wong et V_0634, V_0635, V_0636, V_0637, V_0638, TMEM68, TGS1, LYN, RPS20, MOS, PLAG1, CHCHD7, SDR16C5, SDR16C6, PENK, IMPAD1, C8orf71, FAM110B, al. (2007), V_4594_LC10611_Wong et al. (2007), V_4595_LC10619_Wong et al. (2007), V_4596_LC10633_Wong V_0639, V_0640, V_0641, V_0642, V_0643, UBXN2B, CYP7A1, SDCBP, NSMAF, TOX, CA8, RAB2A, RLBP1L1, ASPH, NKAIN3, GGH, TTPA, YTHDF3, et al. (2007), V_4597_LC10634_Wong et al. (2007), V_4598_LC10640_Wong et al. (2007), V_0979, V_1201, V_1202, V_1203, V_1204, IFITM8P, BHLHE22, CYP7B1, ARMC1, MTFR1, PDE7A, DNAJC5B, TRIM55, CRH, RRS1, ADHFE1, C8orf46, V_4599_LC10697_Wong et al. (2007), V_4600_LC10722_Wong et al. (2007), V_4601_LC10727_Wong et al. V_1205, V_1206, V_1467, V_1468, V_1781, MYBL1, VCPIP1, C8orf44, SGK3, PTTG3, C8orf45, TCF24, LRRC67, COPS5, CSPP1, ARFGEF1, CPA6, PREX2, (2007), V_4602_LC10727_Wong et al. (2007), V_4603_LC10727_Wong et al. (2007), V_4604_LC10727_Wong et V_1782, V_1783, V_1784, V_1785, V_1786, C8orf34, RPS15AP25, SULF1, SLCO5A1, PRDM14, NCOA2, TRAM1, LACTB2, XKR9, EYA1, MSC, TRPA1, al. (2007), V_4605_LC10727_Wong et al. (2007), V_4606_LC10731_Wong et al. (2007), V_4607_LC10749_Wong V_1787, V_1788, V_1789, V_1790, V_1791, KCNB2, TERF1, C8orf84, RPL7, RDH10, STAU2, UBE2W, TCEB1, TMEM70, LY96, JPH1, GDAP1, PI15, et al. (2007), V_4608_LC10811_Wong et al. (2007) V_1792, V_1793, V_1794, V_1795, V_1796, CRISPLD1, HNF4G, ZFHX4, PXMP3, PKIA, FAM164A, IL7, STMN2, HEY1, MRPS28, TPD52, ZBTB10, ZNF704, V_1797, V_1798, V_1799, V_1800, V_1801, PAG1, FABP5, PMP2, FABP9, FABP4, FABP12, IMPA1, SLC10A5, ZFAND1, CHMP4C, SNX16, HNRNPA1P4, V_2126, V_2751, V_2752, V_2753, V_2754, RALYL, LRRCC1, E2F5, CA13, CA1, CA3, CA2, REXO1L1, PSKH2, ATP6V0D2, SLC7A13, WWP1, FAM82B, V_2755, V_2756, V_2757, V_2758, V_2759, CPNE3, CNGB3, CNBD1, WDR21C, MMP16, RIPK2, OSGIN2, NBN, DECR1, CALB1, TMEM64, TMEM55A, V_2760, V_2761, V_2762, V_2763, V_2764, OTUD6B, LRRC69, SLC26A7, RUNX1T1, C8orf83, FAM92 V_2765, V_2766, V_3729, V_3730, V_3731, V_3732, V_3733, V_3734, V_3735, V_3736, V_3737, V_3738, V_3739, V_3740, V_3741, V_3742, V_3743, V_3744, V_4591, V_4592, V_4593, V_4594, V_4595, V_4596, V_4597, V_4598, V_4599, V_4600, V_4601, V_4602, V_4603, V_4604, V_4605, V_4606, V_4607, V_4608, V_5256, V_5257, V_5258, V_6617, V_6618, V_6619, V_6620, V_6621, V_6622, V_6623, V_6624, V_6625, V_6626, V_6627, V_6628, V_6629, V_6630, V_6631, V_6632, V_6633, V_6634, V_6635, V_6636, V_6637, V_6638, V_6639, V_6640, V_6641, V_6642, V_6643, V_6644, V_6645, V_6646, V_6647, V_6648, V_6649, V_66
8 q23.3-q24.3 114506289 146236289 16% TRPS1, EIF3H, UTP23, RAD21, C8orf85, SLC30A8, MED30, EXT1, SAMD12, TNFRSF11B, COLEC10, MAL2, hsa-mir-548d-1, hsa-mir-1204, hsa-mir-1205, hsa-mir-1207, hsa-mir-1208, hsa-mir-30b, V_0123_LC10906_Iafrate et al. (2004), V_0124_LC10922_Iafrate et al. (2004), V_4609_LC10877_Wong et al. V_0123, V_0124, V_0300, V_0337, V_0644, NOV, ENPP2, TAF2, DSCC1, DEPDC6, COL14A1, MRPL13, MTBP, SNTB1, HAS2, ZHX2, DERL1, WDR67, hsa-mir-30d, hsa-mir-151, hsa-mir-937, hsa-mir-661, hsa-mir-939, hsa-mir-1234 (2007), V_4610_LC10912_Wong et al. (2007), V_4611_LC10941_Wong et al. (2007), V_4612_LC10994_Wong et V_0645, V_0646, V_0647, V_0648, V_0980, FAM83A, C8orf76, ZHX1, ATAD2, WDYHV1, FBXO32, KLHL38, ANXA13, FAM91A1, FER1L6, C8orf54, C8orf78, al. (2007), V_4613_LC11006_Wong et al. (2007), V_4614_LC11012_Wong et al. (2007), V_4791_LC10979_Wong V_1207, V_1469, V_1802, V_1803, V_1804, TMEM65, TRMT12, RNF139, TATDN1, NDUFB9, MTSS1, ZNF572, SQLE, KIAA0196, NSMCE2, TRIB1, FAM84B, et al. (2007) V_1805, V_1806, V_2767, V_2768, V_2769, POU5F1B, MYC, TMEM75, CCDC26, GSDMC, FAM49B, ASAP1, ADCY8, EFR3A, OC90, KCNQ3, LRRC6, V_2770, V_2771, V_2772, V_2773, V_2774, TMEM71, PHF20L1, TG, SLA, WISP1, NDRG1, ST3GAL1, ZFAT, KHDRBS3, FAM135B, COL22A1, KCNK9, V_2775, V_2776, V_2777, V_2778, V_2779, TRAPPC9, CHRAC1, EIF2C2, PTK2, DENND3, SLC45A4, GPR20, PTP4A3, TSNARE1, BAI1, ARC, JRK, PSCA, V_3745, V_3746, V_3747, V_3748, V_3749, LY6K, C8orf55, SLURP1, LYPD2, LYNX1, LY6D, GML, CYP11B1, CYP11B2, LY6E, C8orf31, LY6H, GPIHBP1, V_3750, V_3751, V_3752, V_4609, V_4610, ZFP41, ZNF696, TOP1MT, C8orf51, RHPN1, MAFA, ZC3H3, GSDMD, C8orf73, NAPRT1, EEF1D, TIGD5, PYCRL, V_4611, V_4612, V_4613, V_4614, V_4791, TSTA3, ZNF623, MAPK15, FAM83H, SCRIB, NRBP2, PLEC1, PARP10, GRINA, SPATC1, OPLAH, EXOSC4, V_5407, V_6658, V_6659, V_6660, V_6661, GPAA1, CYC1, SHARPIN, MAF1, KIAA1875, C8orf30A, HEATR7A, SCXB, C8orf30B, BOP1, SCXA, HSF1, DGAT1, V_6662, V_6663, V_6664, V_6665, V_6666, SCRT1, FBXL6, GPR172A, ADCK5, CPSF1, SLC39A4, VPS28, NFKBIL2, CYHR1, KIFC2, FOXH1, PPP1R16A, V_6667, V_6668, V_6669, V_6670, V_6671, GPT, MFSD3, RECQL4, LRRC14, LRRC24, C8orf82, ZNF2 V_6672, V_6673, V_6674, V_6675, V_7662, V_7663, V_7665, V_7668, V_7669, V_7670, V_7671, V_7672, V_7673, V_7889, V_8083, V_8613, V_8614, V_8615, V_9098, V_9099, V_9100, V_9606, V_9607, V_9608, V_10268, V_10269, V_10270, V_10271, V_10272, V_10273, V_10274, V_10275, V_10276, V_10277, V_10278, V_22603, V_22639, V_22724, V_22739, V_22871, V_22916, V_23085, V_23090, V_23097, V_23098, V_23123, V_23208, V_23289, V_23290, V_23291, V_23292, V_23860, V_23861, V_23862, V_23863, V_23864, V_23865, V_23866
9 q34.11 131909377 132411835 6% PPP2R4, IER5L, METTL11A, C9orf50, ASB6 V_9625 9 q34.12-q34.13 133655008 134534397 4% ABL1, QRFP, FIBCD1, LAMC3, AIF1L, NUP214, FAM78A, PPAPDC3, BAT2L, POMT1, UCK1, RAPGEF1 V_6721 10 q22.1 72983696 73416612 4% UNC5B, SLC29A3, CDH23 V_10335 11 q13.1 63820946 64500237 4% MACROD1, FLRT1, FERMT3, TRPT1, NUDT22, DNAJC4, VEGFB, FKBP2, PPP1R14B, PLCB3, BAD, GPR137, hsa-mir-1237 V_4752_LC13273_Wong et al. (2007), V_4753_LC13273_Wong et al. (2007) V_4752, V_4753, V_5422, V_6934, V_9667, KCNK4, C11orf20, ESRRA, PRDX5, CCDC88B, RPS6KA4, SLC22A11, SLC22A12, NRXN2, RASGRP2 V_10364
11 q13.2-q13.4 67895810 70902338 6% SUV420H1, C11orf24, LRP5, SAPS3, GAL, MTL5, CPT1A, MRPL21, IGHMBP2, MRGPRD, MRGPRF, TPCN2, hsa-mir-548k V_4755_LC13316_Wong et al. (2007), V_4756_LC13329_Wong et al. (2007) V_4755, V_4756, V_5631, V_5632, V_5633, MYEOV, CCND1, ORAOV1, FGF19, FGF4, FGF3, ANO1, FADD, PPFIA1, CTTN, SHANK2 V_6937, V_10368, V_10369, V_10370, V_23419, V_23420, V_23421
12 p13.31 9247327 9533166 4% A2M, PZP, PTMAP4 V_2970, V_3874, V_6996, V_23296
12 p13.2 10962799 12085277 4% TAS2R10, PRR4, PRH1, TAS2R13, PRH2, TAS2R14, TAS2R50, TAS2R20, TAS2R19, TAS2R43, TAS2R42, PRB3, V_4769_LC13838_Wong et al. (2007) V_1247, V_1248, V_1495, V_1496, V_1497, PRB4, PRB2, ETV6 V_1498, V_1894, V_1895, V_2972, V_3875, V_4769, V_5657, V_5658, V_6960, V_6962, V_9683, V_9684, V_9685, V_9686, V_10386, V_10387, V_10388, V_22928
12 p12.1-p11.22 26108831 28212506 4% RASSF8, BHLHE41, SSPN, ITPR2, C12orf11, FGFR1OP2, TM7SF3, MED21, C12orf71, STK38L, ARNTL2, V_1252, V_1253, V_1254, V_1900, V_1901, C12orf70, PPFIBP1, REP15, MRPS35, KLHDC5, PTHLH V_2975, V_10391, V_22692
12 p11.22-p11.21 28790441 31266660 4% FAR2, ERGIC2, OVCH1, TMTC1, IPO8, CAPRIN2, TSPAN11, DDX11 V_0335, V_1902, V_2976, V_3882, V_3883, V_3884, V_5281, V_5282, V_5283, V_5284, V_5285, V_5286, V_5287, V_5288, V_5290, V_5291, V_5292, V_5293, V_5307, V_6974, V_6975, V_6977, V_6979, V_6980, V_6981, V_6982, V_8252, V_8712, V_8713, V_8714, V_8715, V_8716, V_8717, V_9687, V_9688, V_9689, V_23440
12 q13.11 47967527 48788349 6% RPAP3, RAPGEF3, SLC48A1, HDAC7, VDR, TMEM106C, COL2A1, SENP1, PFKM, ASB8, C12orf68, OR10AD1, V_1258 H1FNT, ZNF641 12 q13.12 50128545 50575674 4% TMBIM6, KIAA1602, BCDIN3D, FAIM2, AQP2, AQP5, AQP6, RACGAP1, ACCN2, SMARCD1, GPD1, C12orf62, LASS5, LIMA1 12 q13.13-q13.2 51786067 55110124 8% SLC4A8, SCN8A, FIGNL2, ANKRD33, ACVRL1, ACVR1B, GRASP, NR4A1, C12orf44, KRT80, KRT7, KRT81, hsa-mir-196a-2, hsa-mir-615, hsa-mir-148b V_0164_LC14085_Iafrate et al. (2004), V_4780_LC14080_Wong et al. (2007) V_0164, V_0429, V_1501, V_1912, V_3890, KRT86, KRT83, KRT85, KRT84, KRT82, KRT75, KRT6B, KRT6C, KRT6A, KRT5, KRT71, KRT74, KRT72, KRT73, V_4780 KRT2, KRT1, KRT77, KRT76, KRT3, KRT4, KRT79, KRT78, KRT8, KRT18, EIF4B, TENC1, SPRYD3, IGFBP6, SOAT2, CSAD, ZNF740, ITGB7, RARG, MFSD5, ESPL1, PFDN5, C12orf10, AAAS, SP7, SP1, AMHR2, PRR13, PCBP2, MAP3K12, TARBP2, NPFF, ATF7, ATP5G2, CALCOCO1, HOXC13, HOXC12, HOXC11, HOXC10, HOXC9, HOXC8, HOXC4, HOXC6, HOXC5, SMUG1, CBX5, HNRNPA1, NFE2, COPZ1, GPR84, ZNF385A, ITGA5, GTSF1, NCKAP1L, PDE1B, PPP1R1A, GLYCAM1, LACRT, DCD 12 q13.3 57255730 57711856 4% SDR9C7, RDH16, GPR182, ZBTB39, TAC3, MYO1A, TMEM194A, NAB2, STAT6, LRP1, NXPH4, SHMT2, hsa-mir-1228 V_1915, V_2985, V_3892, V_9696 NDUFA4L2, STAC3, R3HDM2
12 q21.1 71876296 72198861 4% LGR5, ZFC3H1, THAP2, TMEM19, RAB21 V_7975 12 q23.3 108671001 108844800 4% CMKLR1 12 q24.21 114963688 115826921 4% TBX3 V_4787_LC14460_Wong et al. (2007), V_4788_LC14466_Wong et al. (2007) V_4787, V_4788, V_5694, V_5695
12 q24.22-q24.23 117531870 118316530 4% TESC, FBXO21, NOS1, KSR2 V_1933, V_2997
12 q24.23 118896379 120235277 4% KIAA1853, HSPB8, CCDC60, PRKAB1, CIT hsa-mir-1178 V_3899, V_8248, V_23432
12 q24.31 124885916 125583558 4% NCOR2, SCARB1, UBC, DHX37, BRI3BP, AACS V_1268, V_2999, V_10404
14 q11.2 19968167 20414445 6% OR11H2, OR4Q3, OR4H12P, OR4M1, OR4N2, OR4K2, OR4K5, OR4K1 V_3930, V_8183, V_9726
14 q32.2 97365583 97753032 4% V_4846_LC15993_Wong et al. (2007) V_4846, V_7043
16 p11.2 31908168 32289325 4% ZNF267 V_2210_LC16821_Locke et al. (2006), V_4943_LC16821_Wong et al. (2007), V_4944_LC16821_Wong et al. V_0324, V_0483, V_2210, V_3117, V_4002, (2007), V_4945_LC16821_Wong et al. (2007) V_4943, V_4944, V_4945, V_7105
16 p11.2-p11.1 32631624 33027030 4% IGHV2OR16-5 V_0195_LC16821_Iafrate et al. (2004), V_0795_LC16821_Sharp et al. (2005), V_2212_LC16821_Locke et al. V_0195, V_0324, V_0795, V_2212, V_2214, (2006), V_2214_LC16821_Locke et al. (2006), V_4946_LC16821_Wong et al. (2007) V_3117, V_4002, V_4946, V_7105, V_8273 Supplementary Table 1 Page 17
16 q23.3-q24.3 83786597 90044587 6% CDH13, HSBP1, MLYCD, OSGIN1, NECAB2, SLC38A8, MBTPS1, HSDL1, LRRC50, TAF1C, ADAD2, KCNG4, hsa-mir-1910 V_0199_LC17071_Iafrate et al. (2004), V_0200_LC17076_Iafrate et al. (2004), V_4970_LC17076_Wong et al. V_0199, V_0200, V_0492, V_3133, V_3134, WFDC1, ATP2C2, KIAA1609, COTL1, KLHL36, USP10, CRISPLD2, ZDHHC7, KIAA0513, FAM92B, KIAA0182, (2007), V_4971_LC17076_Wong et al. (2007), V_4972_LC17076_Wong et al. (2007), V_4973_LC17076_Wong et V_3135, V_4015, V_4016, V_4017, V_4018, GINS2, C16orf74, COX4NB, COX4I1, IRF8, FOXF1, MTHFSD, FOXC2, FOXL1, FBXO31, MAP1LC3B, ZCCHC14, al. (2007), V_4974_LC17076_Wong et al. (2007), V_4975_LC17076_Wong et al. (2007), V_4976_LC17076_Wong V_4019, V_4970, V_4971, V_4972, V_4973, JPH3, KLHDC4, SLC7A5, CA5A, BANP, ZNF469, ZFPM1, C16orf85, ZC3H18, IL17C, CYBA, MVD, SNAI3, RNF166, et al. (2007), V_4977_LC17076_Wong et al. (2007), V_4978_LC17076_Wong et al. (2007) V_4974, V_4975, V_4976, V_4977, V_4978, C16orf84, FAM38A, CDT1, APRT, GALNS, TRAPPC2L, CBFA2T3, ACSF3, CDH15, ZNF778, ANKRD11, SPG7, V_5843, V_5844, V_5845, V_7137, V_7138, RPL13, CPNE7, DPEP1, CHMP1A, C16orf55, CDK10, SPATA2L, C16orf7, ZNF276, FANCA, SPIRE2, TCF25, V_7139, V_7140, V_8283, V_10510, TUBB3, DEF8 V_22618, V_23516
17 q11.1-q11.2 25364057 27682563 6% WSB1, KSR1, LGALS9, NOS2, NLK, PPY2, TMEM97, IFT20, TNFAIP1, POLDIP2, SARM1, VTN, SLC46A1, hsa-mir-451, hsa-mir-144 V_4999_LC17431_Wong et al. (2007) V_4030, V_4999, V_5859, V_5860, V_7151 SLC13A2, FOXN1, UNC119, PIGS, ALDOC, SPAG5, KIAA0100, SDF2, SUPT6H, PROCA1, RAB34, RPL23A, TLCD1, NEK8, TRAF4, ERAL1, FLOT2, DHRS13, PHF12, SEZ6, PIPOX, TIAF1, MYO18A, CRYBA1, NUFIP2
17 q11.2 27949741 28314503 4% CORO6, SSH2, EFCAB5 17 q11.2-q12 31312257 33213700 8% SPACA3, ACCN1, CCL2, CCL7, CCL11, CCL8, CCL13, CCL1, C17orf102, TMEM132E V_0799_LC17457_Sharp et al. (2005), V_0800_LC17457_Sharp et al. (2005), V_2220_LC17457_Locke et al. V_0339, V_0799, V_0800, V_2220, V_2221, (2006), V_2221_LC17457_Locke et al. (2006), V_2222_LC17457_Locke et al. (2006), V_2223_LC17457_Locke et V_2222, V_2223, V_3142, V_3143, V_3144, al. (2006), V_5001_LC17457_Wong et al. (2007), V_5003_LC17457_Wong et al. (2007) V_4031, V_4032, V_4033, V_4034, V_5001, V_5003, V_7153, V_7154, V_7155, V_7156, V_7933, V_8260, V_8840, V_8841, V_8842, V_8843, V_8844, V_9770, V_9771, V_9772, V_23027
17 q12-q21.32 34239887 46575103 18% RDM1, LYZL6, CCL16, CCL14, CCL15, CCL23, CCL18, CCL3, CCL4, TBC1D3F, CCL3L1, CCL4L1, TBC1D3C, hsa-mir-152, hsa-mir-1203 V_0205_LC17492_Iafrate et al. (2004), V_0206_LC17502_Iafrate et al. (2004), V_0207_LC17522_Iafrate et al. V_0205, V_0206, V_0207, V_0208, V_0327, CCL4L2, TBC1D3G, ZNHIT3, PIGW, GGNBP2, DHRS11, MRM1, LHX1, AATF, ACACA, C17orf78, TADA2L, (2004), V_0208_LC17538_Iafrate et al. (2004), V_0801_LC17522_Sharp et al. (2005), V_0802_LC17522_Sharp et V_0328, V_0366, V_0367, V_0499, V_0500, DUSP14, AP1GBP1, DDX52, HNF1B, TBC1D3, TBC1D3E, MRPL45, GPR179, SOCS7, C17orf96, MLLT6, CISD3, al. (2005), V_0803_LC17522_Sharp et al. (2005), V_0804_LC17530_Sharp et al. (2005), V_2225_LC17522_Locke V_0501, V_0502, V_0801, V_0802, V_0803, PCGF2, PSMB3, PIP4K2B, CCDC49, C17orf98, RPL23, LASP1, FBXO47, PLXDC1, CACNB1, RPL19, STAC2, et al. (2006), V_2226_LC17522_Locke et al. (2006), V_2227_LC17522_Locke et al. (2006), V_0804, V_1964, V_2225, V_2226, V_2227, FBXL20, MED1, CRKRS, NEUROD2, PPP1R1B, STARD3, TCAP, PNMT, PERLD1, ERBB2, C17orf37, GRB7, V_2228_LC17522_Locke et al. (2006), V_2229_LC17530_Locke et al. (2006), V_5006_LC17473_Wong et al. V_2228, V_2229, V_3145, V_3146, V_3147, IKZF3, ZPBP2, GSDMB, ORMDL3, GSDMA, PSMD3, CSF3, MED24, THRA, NR1D1, MSL1, CASC3, RAPGEFL1, (2007), V_5007_LC17508_Wong et al. (2007), V_5008_LC17512_Wong et al. (2007), V_5009_LC17516_Wong et V_3148, V_4035, V_4036, V_4037, V_4038, WIPF2, CDC6, RARA, GJD3, TOP2A, IGFBP4, TNS4, CCR7, SMARCE1, KRT222P, KRT24, KRT25, KRT26, al. (2007), V_5010_LC17522_Wong et al. (2007), V_5011_LC17522_Wong et al. (2007), V_5012_LC17522_Wong V_4039, V_4040, V_5006, V_5007, V_5008, KRT27, KRT28, KRT10, TMEM99, KRT12, KRT20, KRT23, KRT39, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, et al. (2007), V_5014_LC17522_Wong et al. (2007), V_5015_LC17522_Wong et al. (2007), V_5009, V_5010, V_5011, V_5012, V_5014, KRTAP1-5, KRTAP1-4, KRTAP1-3, KRTAP1-1, KRTAP2-2, KRTAP2-1, KRTAP2-4, KRTAP4-9, KRTAP4-8, KRTAP4- V_5016_LC17543_Wong et al. (2007), V_5017_LC17552_Wong et al. (2007), V_5018_LC17559_Wong et al. (2007) V_5015, V_5016, V_5017, V_5018, V_5861, 11, KRTAP4-12, KRTAP4-6, KRTAP4-5, KRTAP4-4, KRTAP4-3, KRTAP4-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, V_5862, V_5863, V_5864, V_5865, V_5866, KRTAP9-6, KRTAP9-7, KRTAP16-1, KRTAP17-1, KRT33A, KRT33B, KRT34, KRT31, KRT37, KRT38, KRT32, V_5867, V_5868, V_7158, V_7159, V_7160, KRT35, KRT36, KRT13, KRT15, KRT19, KRT9, KRT14, KR V_7161, V_7162, V_7163, V_8112, V_8181, V_8243, V_8845, V_8846, V_8847, V_8848, V_8849, V_8850, V_8851, V_9286, V_9287, V_9288, V_9289, V_9290, V_9773, V_9774, V_9775, V_9776, V_10516, V_22862, V_22961, V_23198, V_23316, V_23317, V_23522, V_23523
17 q21.33 47581243 49204340 10% NGFR, NXPH3, SPOP, SLC35B1, FAM117A, MYST2, TAC4, DLX4, DLX3, ITGA3, PDK2, SAMD14, PPP1R9B, V_0209_LC17565_Iafrate et al. (2004) V_0209, V_3149, V_4041, V_5334, V_8049, SGCA, HILS1, COL1A1, TMEM92, XYLT2, MRPL27, EME1, LRRC59, ACSF2, CHAD, RSAD1, MYCBPAP, EPN3, V_23524 SPATA20, CACNA1G, ABCC3, ANKRD40, WFIKKN2, TOB1, SPAG9
17 q22 54559052 54816701 4% ANKFN1, NOG V_4043 17 q22 55386729 56713935 8% MSI2, MRPS23, CUEDC1, VEZF1, SFRS1, DYNLL2, OR4D1, OR4D2, EPX, MKS1, LPO, MPO, BZRAP1, hsa-mir-142 V_0805_LC17601_Sharp et al. (2005) V_0805, V_4044, V_7169 SUPT4H1, RNF43, HSF5, MTMR4, Sep-04, C17orf47, TEX14
17 q22-q24.2 57322439 65634809 12% GDPD1, YPEL2, DHX40, CLTC, PTRH2, TMEM49, TUBD1, RPS6KB1, RNFT1, HEATR6, CA4, USP32, C17orf64, hsa-mir-21, hsa-mir-633, hsa-mir-634, hsa-mir-548d-2 V_0210_LC17626_Iafrate et al. (2004), V_0211_LC17666_Iafrate et al. (2004), V_0806_LC17642_Sharp et al. V_0210, V_0211, V_0806, V_2230, V_2231, APPBP2, PPM1D, BCAS3, TBX2, C17orf82, TBX4, BRIP1, MED13, TBC1D3P2, EFCAB3, METTL2A, TLK2, MRC2, (2005), V_2230_LC17608_Locke et al. (2006), V_2231_LC17631_Locke et al. (2006), V_2232_LC17640_Locke et V_2232, V_4045, V_4046, V_5020, V_5021, Mar-10, TANC2, CYB561, ACE, KCNH6, WDR68, CCDC44, MAP3K3, LIMD2, STRADA, CCDC47, DDX42, FTSJ3, al. (2006), V_5020_LC17608_Wong et al. (2007), V_5021_LC17617_Wong et al. (2007), V_5022_LC17631_Wong V_5022, V_5023, V_5024, V_5026, V_5027, PSMC5, SMARCD2, CSH2, GH2, CSH1, CSHL1, GH1, CD79B, C17orf72, ICAM2, ERN1, TEX2, POLG2, DDX5, et al. (2007), V_5023_LC17631_Wong et al. (2007), V_5024_LC17631_Wong et al. (2007), V_5871, V_5872, V_5873, V_5874, V_5875, CCDC45, SMURF2, PLEKHM1P, LRRC37A3, GNA13, RGS9, AXIN2, CCDC46, APOH, PRKCA, CACNG5, V_5026_LC17636_Wong et al. (2007), V_5027_LC17640_Wong et al. (2007) V_5876, V_7170, V_10518, V_22888, CACNG4, CACNG1, HELZ, PSMD12, PITPNC1 V_22953, V_23527
17 q24.2-q25.3 66115646 80910664 18% AMZ2, ARSG, SLC16A6, WIPI1, PRKAR1A, FAM20A, ABCA8, ABCA9, ABCA6, ABCA10, ABCA5, MAP2K6, hsa-mir-635, hsa-mir-636, hsa-mir-657, hsa-mir-338, hsa-mir-1250 V_0212_LC17741_Iafrate et al. (2004), V_0213_LC17753_Iafrate et al. (2004), V_0807_LC17750_Sharp et al. V_0212, V_0213, V_0503, V_0504, V_0505, KCNJ16, KCNJ2, SOX9, SLC39A11, SSTR2, COG1, FAM104A, C17orf80, CPSF4L, CDC42EP4, SDK2, RPL38, (2005), V_2233_LC17750_Locke et al. (2006), V_2234_LC17753_Locke et al. (2006), V_2235_LC17756_Locke et V_0807, V_2233, V_2234, V_2235, V_3152, TTYH2, DNAI2, KIF19, BTBD17, GPRC5C, CD300A, CD300LB, CD300C, CD300LD, C17orf77, CD300E, RAB37, al. (2006), V_4327_LC17763_Wong et al. (2007), V_5028_LC17688_Wong et al. (2007), V_5029_LC17706_Wong V_3153, V_3154, V_4047, V_4048, V_4327, CD300LF, SLC9A3R1, NAT9, TMEM104, GRIN2C, FDXR, FADS6, USH1G, OTOP2, OTOP3, C17orf28, CDR2L, et al. (2007), V_5030_LC17713_Wong et al. (2007), V_5031_LC17717_Wong et al. (2007), V_5028, V_5029, V_5030, V_5031, V_5032, ICT1, ATP5H, KCTD2, SLC16A5, ARMC7, NT5C, HN1, SUMO2, NUP85, GGA3, MRPS7, MIF4GD, SLC25A19, V_5032_LC17720_Wong et al. (2007), V_5033_LC17737_Wong et al. (2007), V_5034_LC17743_Wong et al. V_5033, V_5034, V_5035, V_5036, V_5039, GRB2, KIAA0195, CASKIN2, TSEN54, LLGL2, MYO15B, MYO15B, RECQL5, SAP30BP, ITGB4, GALK1, H3F3B, (2007), V_5035_LC17750_Wong et al. (2007), V_5036_LC17763_Wong et al. (2007), V_5039_LC17763_Wong et V_5040, V_5041, V_5042, V_5043, V_5336, UNK, UNC13D, WBP2, TRIM47, TRIM65, MRPL38, FBF1, ACOX1, CDK3, EVPL, SRP68, GALR2, ZACN, EXOC7, al. (2007), V_5040_LC17763_Wong et al. (2007), V_5041_LC17763_Wong et al. (2007), V_5042_LC17763_Wong V_5877, V_5878, V_5879, V_5880, V_5881, FOXJ1, RNF157, FAM100B, QRICH2, PRPSAP1, SPHK1, UBE2O, AANAT, RHBDF2, CYGB, PRCD, SNORD1C, et al. (2007), V_5043_LC17763_Wong et al. (2007) V_5882, V_5883, V_7171, V_7172, V_7173, ST6GALNAC2, ST6GALNAC1, MXRA7, JMJD6, C17orf95, SFRS2, MFSD11, MGAT5B, SEC14L1, TNRC6C, TMC6, V_7174, V_7175, V_7176, V_8245, V_8266, TMC8, C17orf99, SYNGR2, TK1, AFMID, BIRC5, SOCS3, PGS1, DNAH17, CYTH1, USP36, TIMP2, LGALS3BP, V_8852, V_8853, V_9777, V_10519, CANT1, C1QTNF1, ENGASE, ENPP7, CBX2, CBX8, CBX4, TBC1D16, CCDC40, GAA, EIF4A3, CARD14, SGSH, V_10520, V_10521, V_10522, V_23318, SLC26A11, KIAA1618, RNF213, NPTX1, CHMP6, BAIAP2 V_23319, V_23528, V_23529, V_23532, V_23533, V_23534, V_23535, V_23536, V_23537
18 q11.2-q12.1 20771435 26488339 6% CABLES1, C18orf45, RIOK3, C18orf8, NPC1, ANKRD29, LAMA3, TTC39C, CABYR, OSBPL1A, IMPACT, HRH4, hsa-mir-320c-2 V_5047_LC18053_Wong et al. (2007), V_5048_LC18073_Wong et al. (2007), V_5049_LC18082_Wong et al. (2007) V_1967, V_3161, V_3162, V_5047, V_5048, ZNF521, SS18, PSMA8, TAF4B, KCTD1, AQP4, CHST9, CDH2 V_5049, V_5897, V_5898, V_9778, V_10531, V_23149, V_23542, V_23543
19 p13.3-p13.2 2189293 8687198 6% DOT1L, PLEKHJ1, SF3A2, AMH, JSRP1, OAZ1, C19orf35, LINGO3, LSM7, TMPRSS9, TIMM13, LMNB2, hsa-mir-1227, hsa-mir-637, hsa-mir-7-3, hsa-mir-220b V_0808_LC18794_Sharp et al. (2005), V_2238_LC18783_Locke et al. (2006), V_2239_LC18794_Locke et al. V_0507, V_0808, V_2238, V_2239, V_5067, GADD45B, DIRAS1, SLC39A3, SGTA, THOP1, ZNF554, ZNF555, ZNF556, ZNF77, ZNF57, TLE6, AES, GNA11, (2006), V_5067_LC18671_Wong et al. (2007), V_5068_LC18671_Wong et al. (2007), V_5069_LC18671_Wong et V_5068, V_5069, V_5070, V_5071, V_5072, GNA15, S1PR4, NCLN, BRUNOL5, NFIC, DOHH, RAX2, FZR1, C19orf28, C19orf71, HMG20B, GIPC3, C19orf64, al. (2007), V_5070_LC18730_Wong et al. (2007), V_5071_LC18730_Wong et al. (2007), V_5072_LC18736_Wong V_5073, V_5074, V_5075, V_5076, V_5077, TBXA2R, C19orf29OS, PIP5K1C, TJP3, APBA3, MRPL54, MATK, ZFR2, ATCAY, ITGB1BP3, DAPK3, EEF2, et al. (2007), V_5073_LC18746_Wong et al. (2007), V_5074_LC18749_Wong et al. (2007), V_5078, V_5079, V_5080, V_5340, V_5341, PIAS4, ZBTB7A, MAP2K2, CREB3L3, SIRT6, ANKRD24, EBI3, CCDC94, SHD, TMIGD2, FSD1, STAP2, MPND, V_5075_LC18752_Wong et al. (2007), V_5076_LC18770_Wong et al. (2007), V_5077_LC18773_Wong et al. V_5342, V_5931, V_5932, V_7202, V_7223, SH3GL1, CHAF1A, UBXN6, KIAA1881, LRG1, SEMA6B, TNFAIP8L1, C19orf10, FEM1A, TICAM1, M6PRBP1, (2007), V_5078_LC18783_Wong et al. (2007), V_5079_LC18794_Wong et al. (2007), V_5080_LC18794_Wong et V_7224, V_7955, V_8089, V_8264, V_8862, ARRDC5, C19orf31, KDM4B, PTPRS, ZNRF4, SAFB2, SAFB, C19orf70, HSD11B1L, RPL36, LONP1, TMEM146, al. (2007) V_8863, V_9301, V_9302, V_10542, DUS3L, NRTN, FUT6, FUT3, FUT5, NDUFA11, CAPS, RANBP3, RFX2, ACSBG2, MLLT1, ACER1, CLPP, ALKBH7, V_22876, V_23262, V_23559, V_23560, PSPN, GTF2F1, KHSRP, SLC25A41, SLC25A23, CRB3, DENND1C, TUBB4, TNFSF9, CD70, TNFSF14, C3, V_23573 GPR108, TRIP10, SH2D3A, VAV1, EMR1, EMR4P, MBD3L2, ZNF557, INSR, ARHGEF18, PEX11G, C19orf45, ZNF358, MCOLN1, PNPLA6, KIAA1543, XAB2, PCP2, STXBP2, RETN, C19orf59, TRAPPC5, FCER2, CLEC4G, CD209, CLEC4M, EVI5L, LRRC8E, MAP2K7, SNAPC2, CT
19 p13.2 8769145 8970847 36% ACTL9, OR2Z1, ZNF558, MBD3L1 V_0220_LC18794_Iafrate et al. (2004), V_5081_LC18794_Wong et al. (2007), V_5082_LC18794_Wong et al. V_0220, V_0509, V_4067, V_5081, V_5082, (2007), V_5083_LC18794_Wong et al. (2007) V_5083
19 p13.2 10189325 10815611 4% C19orf66, ANGPTL6, PPAN, EIF3G, DNMT1, S1PR2, MRPL4, ICAM1, ICAM4, ICAM5, FDX1L, RAVER1, ICAM3, hsa-mir-1181, hsa-mir-1238 V_5085_LC18818_Wong et al. (2007), V_5086_LC18821_Wong et al. (2007), V_5087_LC18821_Wong et al. (2007) V_5085, V_5086, V_5087, V_5939 TYK2, CDC37, PDE4A, KEAP1, S1PR5, ATG4D, KRI1, CDKN2D, AP1M2, SLC44A2, ILF3, QTRT1
19 p13.2 12877009 13851986 8% HOOK2, JUNB, PRDX2, RNASEH2A, RTBDN, MAST1, DNASE2, KLF1, GCDH, SYCE2, FARSA, CALR, RAD23A, V_4400_LC18834_Wong et al. (2007), V_5088_LC18841_Wong et al. (2007) V_4400, V_5088 GADD45GIP1, DAND5, NFIX, LYL1, TRMT1, NACC1, STX10, IER2, CACNA1A 19 p13.12 14731862 15714969 4% EMR3, ZNF333, EMR2, OR7C1, OR7A5, OR7A10, OR7A2P, OR7A17, OR7C2, SLC1A6, CCDC105, CASP14, hsa-mir-1470 V_3181, V_4068, V_8864, V_9788, V_10544 OR1I1, SYDE1, ILVBL, NOTCH3, EPHX3, BRD4, AKAP8, AKAP8L, WIZ, RASAL3, PGLYRP2, CYP4F22
19 p13.11 17006605 17696373 4% CPAMD8, HAUS8, MYO9B, USE1, OCEL1, NR2F6, USHBP1, ANKLE1, ABHD8, MRPL34, DDA1, ANO8, GTPBP3, V_5091_LC18881_Wong et al. (2007) V_5091, V_5338 PLVAP, BST2, FAM125A, TMEM221, NXNL1, SLC27A1, PGLS, FAM129C, GLT25D1 Supplementary Table 1 Page 18
19 q11-q13.43 27952332 59077721 18% UQCRFS1, VSTM2B, POP4, PLEKHF1, C19orf12, CCNE1, C19orf2, ZNF536, TSHZ3, ZNF507, DPY19L3, PDCD5, hsa-mir-641, hsa-mir-330, hsa-mir-642, hsa-mir-769, hsa-mir-220c, hsa-mir-150, hsa-mir- V_0221_LC19039_Iafrate et al. (2004), V_2243_LC19026_Locke et al. (2006), V_2244_LC19026_Locke et al. V_0221, V_0510, V_0511, V_0512, V_0513, ANKRD27, RGS9BP, NUDT19, TDRD12, SLC7A9, CCDC123, C19orf40, RHPN2, GPATCH1, WDR88, LRP3, 99b, hsa-let-7e, hsa-mir-125a, hsa-mir-643, hsa-mir-512-1, hsa-mir-512-1, hsa-mir-1323, (2006), V_2245_LC19036_Locke et al. (2006), V_2246_LC19081_Locke et al. (2006), V_2247_LC19092_Locke et V_0514, V_0515, V_0516, V_0517, V_0518, SLC7A10, CEBPG, PEPD, CHST8, KCTD15, LSM14A, KIAA0355, GPI, PDCD2L, UBA2, WTIP, SCGBL, ZNF181, hsa-mir-498, hsa-mir-520e, hsa-mir-515-1, hsa-mir-519e, hsa-mir-520f, hsa-mir-515-1, al. (2006), V_5096_LC18924_Wong et al. (2007), V_5097_LC18975_Wong et al. (2007), V_5098_LC18976_Wong V_1299, V_1300, V_1301, V_1521, V_1990, ZNF599, ZNF30, ZNF792, GRAMD1A, SCN1B, HPN, FXYD3, LGI4, FXYD1, FXYD7, FXYD5, FAM187B, LSR, hsa-mir-519c, hsa-mir-1283-1, hsa-mir-520a, hsa-mir-526b, hsa-mir-519b, hsa-mir-525, et al. (2007), V_5099_LC18991_Wong et al. (2007), V_5100_LC19016_Wong et al. (2007), V_2243, V_2244, V_2245, V_2246, V_2247, USF2, HAMP, MAG, CD22, FFAR1, FFAR3, FFAR2, KRTDAP, DMKN, GAPDHS, TMEM147, ATP4A, HAUS5, hsa-mir-523, hsa-mir-518f, hsa-mir-520b, hsa-mir-518b, hsa-mir-526a-1, hsa-mir-520c, V_5101_LC19026_Wong et al. (2007), V_5102_LC19026_Wong et al. (2007), V_5103_LC19048_Wong et al. V_3187, V_3188, V_3189, V_3190, V_3191, RBM42, ETV2, COX6B1, UPK1A, ZBTB32, TMEM149, U2AF1L4, PSENEN, LIN37, HSPB6, C19orf55, SNX26, hsa-mir-518c, hsa-mir-524, hsa-mir-517a, hsa-mir-519d, hsa-mir-521-2, hsa-mir-520d, (2007), V_5104_LC19056_Wong et al. (2007), V_5105_LC19069_Wong et al. (2007), V_5106_LC19070_Wong et V_3192, V_3193, V_3194, V_3195, V_3196, PRODH2, KIRREL2, APLP1, NFKBID, HCST, TYROBP, LRFN3, C19orf46, CLIP3, THAP8, WDR62, POLR2I, hsa-mir-517b, hsa-mir-520g, hsa-mir-516b-2, hsa-mir-526a-2, hsa-mir-518e, hsa-mir- al. (2007), V_5107_LC19073_Wong et al. (2007), V_5108_LC19073_Wong et al. (2007), V_5109_LC19078_Wong V_3197, V_3198, V_4074, V_4075, V_4076, TBCB, CAPNS1, COX7A1, ZNF565, ZNF146, ZFP14, ZFP82, ZNF566, ZNF529, ZNF382, ZNF461, ZNF567, 518a-1, hsa-mir-518d, hsa-mir-516b-1, hsa-mir-518a-2, hsa-mir-517c, hsa-mir-520h, hsa et al. (2007), V_5110_LC19081_Wong et al. (2007), V_5111_LC19081_Wong et al. (2007), V_4077, V_4078, V_4079, V_4080, V_4081, ZNF790, ZNF345, ZNF568, ZNF420, ZNF585A, ZNF585B, ZNF383, ZNF527, ZNF569, ZNF570, ZNF793, ZNF540, mir-521-1, hsa-mir-522, hsa-mir-519a-1, hsa-mir-527, hsa-mir-516a-1, hsa-mir-1283-2, V_5112_LC19081_Wong et al. (2007), V_5113_LC19081_Wong et al. (2007), V_5114_LC19090_Wong et al. V_4082, V_4083, V_4084, V_4085, V_4086, ZNF571, ZFP30, ZNF781, ZNF607, ZNF573, WDR87, SIPA1L3, DPF1, PPP1R14A, SPINT2, C19orf33, YIF1B, hsa-mir-516a-2, hsa-mir-519a-2, hsa-mir-371, hsa-mir-372, hsa-mir-373, hsa-mir-935, (2007), V_5115_LC19131_Wong et al. (2007) V_4087, V_5096, V_5097, V_5098, V_5099, KCNK6, C19orf15, PSMD8, GGN, SPRED3, FAM98C, RASGRP4, RYR1, MAP4K1, EIF3K, ACTN4, CAPN12, hsa-mir-1274b V_5100, V_5101, V_5102, V_5103, V_5104, LGALS7, LGALS7B, LGALS4, ECH1, HNRNPL, RINL, SIRT2, NFKBIB, FBXO17, MRPS12, FBXO27, PAK4, V_5105, V_5106, V_5107, V_5108, V_5109, NCCRP1, SYCN, IL28B, IL28A, IL29, LRFN1, GMFG, SAM V_5110, V_5111, V_5112, V_5113, V_5114, V_5115, V_5343, V_5444, V_5445, V_5446, V_5948, V_5949, V_5950, V_5951, V_5952, V_5953, V_5954, V_5955, V_5956, V_5957, V_5958, V_5959, V_7198, V_7199, V_7200, V_7201, V_7204, V_7205, V_7206, V_7207, V_7208, V_7209, V_7210, V_7211, V_7212, V_7213, V_7214, V_7215, V_7216, V_7217, V_8023, V_8070, V_8099, V_8114, V_8160, V_8163, V_8871, V_8872, V_8873, V_8874, V_8875, V_9305, V_9306, V_9307, V_9308, V_9309, V_9310, V_9311, V_9793, V_9794, V_9795, V_9796, V_9797, V_9798, V_9799, V_9800, V_9801, V_9802, V_9803, V_9804, V_9805, V_9806, V_98
20 p13 90210 2769056 10% DEFB126, DEFB127, DEFB128, DEFB129, DEFB132, C20orf96, ZCCHC3, SOX12, NRSN2, TRIB3, RBCK1, hsa-mir-1292 V_0222_LC19227_Iafrate et al. (2004), V_2249_LC19199_Locke et al. (2006), V_2250_LC19207_Locke et al. V_0222, V_0536, V_1522, V_1991, V_1992, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, C20orf54, FAM110A, RPS10P5, ANGPT4, RSPO4, PSMF1, (2006), V_5120_LC19207_Wong et al. (2007) V_2249, V_2250, V_3205, V_4090, V_4091, C20orf46, RAD21L1, SDCBP2, FKBP1A, NSFL1C, SIRPB2, SIRPD, SIRPB1, SIRPG, SIRPA, PDYN, STK35, V_5120, V_6039, V_6040, V_6041, V_6042, TGM3, TGM6, SNRPB, ZNF343, TMC2, NOP56, IDH3B, EBF4 V_6043, V_6044, V_6045, V_7296, V_7297, V_7299, V_7300, V_8878, V_9313, V_9819, V_9820, V_10573, V_22910
20 p13 3229383 3806120 4% C20orf194, ATRN, GFRA4, ADAM33, SIGLEC1, HSPA12B, C20orf27, SPEF1, CENPB, CDC25B, C20orf29 V_5121_LC19253_Wong et al. (2007) V_5121 20 p13 4237740 4765931 4% PRNP, PRND, PRNT, RASSF2 V_6048, V_22540
20 p12.3-p12.2 5755954 9310140 8% C20orf196, CHGB, TRMT6, MCM8, CRLS1, LRRN4, FERMT1, BMP2, HAO1, TMX4, PLCB1, PLCB4 V_5122_LC19294_Wong et al. (2007), V_5123_LC19298_Wong et al. (2007), V_5124_LC19312_Wong et al. (2007) V_3206, V_4092, V_4093, V_5122, V_5123, V_5124, V_5346, V_6051, V_6052, V_6053, V_6054, V_6055, V_6056, V_6057, V_6058, V_6059, V_8879, V_22761, V_23632
20 p12.2 11033066 11413367 4% V_4094 20 p12.1 12916404 13126970 4% SPTLC3 V_5125_LC19365_Wong et al. (2007) V_5125 20 p12.1 14231362 15094738 8% MACROD2, FLRT3 V_0537, V_1523, V_1993, V_3209, V_3210, V_4096, V_5448, V_5449, V_6062, V_6063, V_6064, V_7295, V_8105, V_9314, V_9315, V_9316, V_9317, V_10574, V_10575, V_23247
20 p11.23 20308317 20642617 4% C20orf26, INSM1, C20orf74 V_22703 20 q11.21-q13.33 30072279 61957490 22% REM1, HM13, ID1, COX4I2, BCL2L1, TPX2, MYLK2, FOXS1, DUSP15, TTLL9, PDRG1, XKR7, C20orf160, HCK, hsa-mir-1825, hsa-mir-644, hsa-mir-499, hsa-mir-1289-1, hsa-mir-645, hsa-mir-1302-5, V_0226_LC19822_Iafrate et al. (2004), V_2251_LC19741_Locke et al. (2006), V_2252_LC19985_Locke et al. V_0226, V_0538, V_0539, V_0540, V_0541, TM9SF4, PLAGL2, POFUT1, KIF3B, ASXL1, C20orf112, COMMD7, DNMT3B, MAPRE1, EFCAB8, SPAG4L, BPIL1, hsa-mir-296, hsa-mir-298, hsa-mir-646, hsa-mir-1257, hsa-mir-1-1, hsa-mir-133a-2, hsa- (2006), V_5132_LC19553_Wong et al. (2007), V_5133_LC19567_Wong et al. (2007), V_5134_LC19585_Wong et V_1524, V_1525, V_1526, V_1995, V_1996, BPIL3, C20orf185, C20orf186, C20orf70, C20orf71, PLUNC, C20orf114, CDK5RAP1, SNTA1, CBFA2T2, NECAB3, mir-124-3 al. (2007), V_5135_LC19601_Wong et al. (2007), V_5136_LC19617_Wong et al. (2007), V_5137_LC19651_Wong V_2251, V_2252, V_3216, V_3217, V_3218, C20orf144, C20orf134, E2F1, PXMP4, ZNF341, CHMP4B, RALY, EIF2S2, AHCY, ASIP, ITCH, DYNLRB1, et al. (2007), V_5138_LC19665_Wong et al. (2007), V_5139_LC19754_Wong et al. (2007), V_3219, V_3220, V_3221, V_3222, V_3223, MAP1LC3A, PIGU, TP53INP2, NCOA6, GGT7, ACSS2, GSS, MYH7B, TRPC4AP, EDEM2, PROCR, EIF6, MMP24, V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007), V_5142_LC19835_Wong et al. V_4100, V_4101, V_4102, V_4103, V_4104, FAM83C, UQCC, GDF5OS, GDF5, CEP250, C20orf173, ERGIC3, SPAG4, CPNE1, ROMO1, RBM39, PHF20, (2007), V_5143_LC19835_Wong et al. (2007), V_5144_LC19966_Wong et al. (2007), V_5145_LC19985_Wong et V_4105, V_4106, V_4107, V_5132, V_5133, SCAND1, C20orf152, EPB41L1, C20orf4, DLGAP4, MYL9, TGIF2, C20orf24, SLA2, NDRG3, DSN1, C20orf117, al. (2007), V_5146_LC19985_Wong et al. (2007), V_5147_LC19985_Wong et al. (2007), V_5148_LC19985_Wong V_5134, V_5135, V_5136, V_5137, V_5138, C20orf118, SAMHD1, RBL1, C20orf132, RPN2, GHRH, MANBAL, SRC, BLCAP, NNAT, CTNNBL1, VSTM2L, et al. (2007), V_5149_LC19985_Wong et al. (2007), V_5150_LC19985_Wong et al. (2007) V_5139, V_5140, V_5141, V_5142, V_5143, KIAA0406, RPRD1B, TGM2, KIAA1755, BPI, LBP, KIAA1219, ADIG, C20orf95, SLC32A1, ACTR5, PPP1R16B, V_5144, V_5145, V_5146, V_5147, V_5148, FAM83D, DHX35, MAFB, TOP1, PLCG1, ZHX3, LPIN3, EMILIN3, CHD6, PTPRT, SFRS6, L3MBTL, SGK2, IFT52, V_5149, V_5150, V_5347, V_6086, V_6087, MYBL2, GTSF1L, TOX2, JPH2, C20orf111, GDAP1L1, FITM2, R3HDML, HNF4A, C20orf62, TTPAL, SERINC3, V_6088, V_6089, V_6090, V_6091, V_6092, PKIG, ADA, WISP2, KCNK15, RIMS4, YWHAB, PABPC1L V_6093, V_6094, V_6095, V_6096, V_6097, V_6098, V_6099, V_6100, V_6101, V_6102, V_6103, V_6104, V_6105, V_6106, V_6107, V_6108, V_6109, V_6110, V_6111, V_6112, V_6113, V_6114, V_6115, V_6116, V_6117, V_6118, V_6119, V_6120, V_6121, V_6122, V_6123, V_6124, V_6125, V_6126, V_6127, V_6128, V_6129, V_7306, V_7307, V_7308, V_7309, V_7310, V_7311, V_7312, V_7314, V_7315, V_7805, V_7860, V_7911, V_7916, V_7966, V_8227, V_8884, V_8885, V_8886, V_8887, V_8888, V_8889, V_9319, V_9320, V_9321, V_9823, V_9824, V_9825, V_9826, V_9827, V_10580, V_10581, V_10582, V_10583, V_10584, V_10585, V_10586, V_10587, V_10588, V_
21 q22.13-q22.3 39312016 48102348 10% DSCR4, DSCR8, KCNJ15, ERG, ETS2, C21orf104, PSMG1, BRWD1, C21orf87, HMGN1, WRB, LCA5L, SH3BGR, V_5162_LC20269_Wong et al. (2007), V_5163_LC20269_Wong et al. (2007) V_3233, V_3234, V_3235, V_5162, V_5163, B3GALT5, C21orf88, IGSF5, PCP4, DSCAM, BACE2, FAM3B, MX2, MX1, TMPRSS2, RIPK4, PRDM15, C2CD2, V_6137, V_6138, V_6139, V_6140, V_7325, ZNF295, UMODL1, C21orf128, ABCG1, TFF3, TFF2, TFF1, TMPRSS3, UBASH3A, RSPH1, SLC37A1, PDE9A, V_7326, V_7327, V_8290, V_8896, V_8897, WDR4, NDUFV3, PKNOX1, CBS, U2AF1, CRYAA, C21orf136, SIK1, HSF2BP, RRP1B, PDXK, CSTB, RRP1, V_9329, V_9832, V_9833, V_10602, AGPAT3, TRAPPC10, C21orf33, C21orf32, ICOSLG, DNMT3L, AIRE, PFKL, C21orf2, TRPM2, LRRC3, C21orf30, V_10603, V_10604, V_22579, V_23641, C21orf29, C21orf90, KRTAP10-1, KRTAP10-2, KRTAP10-3, KRTAP10-4, KRTAP10-6, KRTAP10-7, KRTAP10-8, V_23642, V_23643, V_23644, V_29433 KRTAP10-9, KRTAP10-10, KRTAP10-11, KRTAP12-4, KRTAP12-2, KRTAP12-1, KRTAP10-12, UBE2G2, SUMO3, PTTG1IP, ITGB2, C21orf67, C21orf69, C21orf70, ADARB1, POFUT2, C21orf86, COL18A1, NCRNA00175, SLC19A1, PCBP3, COL6A1, COL6A2, FTCD, C21orf56, LSS, MCM3AP, C21orf57, C21orf58, PCNT, DIP2A, S100B, PRMT2
22 q11.1 16061103 16505264 10% POTEH, OR11H1 V_2007, V_6141, V_8276, V_22519, V_23647
22 q11.1-q11.21 17551939 17922858 4% IL17RA, CECR6, CECR5, CECR1, CECR2 V_8901, V_22959
22 q11.21 18674965 18964431 4% DGCR6, PRODH V_4117, V_7332, V_22959
22 q11.21 19694140 21127514 4% RPL7AP70, Sep-05, GP1BB, TBX1, GNB1L, C22orf29, TXNRD2, COMT, ARVCF, C22orf25, DGCR8, TRMT2A, hsa-mir-185, hsa-mir-1306, hsa-mir-1286 V_0816_LC20342_Sharp et al. (2005), V_0817_LC20342_Sharp et al. (2005), V_2030_LC20342_Urban et al (2006) V_0543, V_0544, V_0816, V_0817, V_1310, RANBP1, ZDHHC8, RTN4R, DGCR6L, GGTLC3, TMEM191B, RIMBP3, USP41, ZNF74, KLHL22, MED15, V_2262_LC20342_Locke et al. (2006), V_2263_LC20342_Locke et al. (2006), V_2264_LC20342_Locke et al. V_2009, V_2010, V_2011, V_2012, V_2013, POM121L4P, TOP3B (2006), V_2265_LC20342_Locke et al. (2006), V_2266_LC20342_Locke et al. (2006), V_5170_LC20342_Wong et V_2014, V_2015, V_2016, V_2017, V_2018, al. (2007), V_5171_LC20342_Wong et al. (2007), V_5172_LC20342_Wong et al. (2007), V_5173_LC20342_Wong V_2019, V_2030, V_2262, V_2263, V_2264, et al. (2007), V_5174_LC20342_Wong et al. (2007), V_5175_LC20342_Wong et al. (2007) V_2265, V_2266, V_4118, V_5170, V_5171, V_5172, V_5173, V_5174, V_5175, V_5354, V_5355, V_5356, V_5451, V_6144, V_7333, V_8101, V_8224, V_9834, V_10609, V_10610, V_10611, V_10613, V_10614, V_10615, V_10616, V_22959, V_23322, V_23323, V_23324
22 q11.23-q12.1 25609985 28258659 4% CRYBB2, LRP5L, ADRBK2, MYO18B, SEZ6L, ASPHD2, HPS4, SRRD, TFIP11, TPST2, CRYBB1, CRYBA4, MN1, hsa-mir-548j V_2024, V_6146, V_10622, V_22584 PITPNB
22 q12.2 30394339 30775677 4% MTMR3, HORMAD2, LIF, OSM, TBC1D10A, SF3A1, CCDC157, RNF215 22 q12.3 36480247 37041040 6% APOL3, APOL4, APOL2, APOL1, MYH9, TXN2, FOXRED2, EIF3D, CACNG2 V_5185_LC20500_Wong et al. (2007), V_5186_LC20500_Wong et al. (2007) V_4128, V_5185, V_5186, V_6149, V_23652
22 q13.1 38199249 38755096 4% H1F0, GCAT, GALR3, ANKRD54, EIF3L, MICALL1, C22orf23, POLR2F, SOX10, PICK1, SLC16A8, BAIAP2L2, hsa-mir-658, hsa-mir-659 V_5187_LC20514_Wong et al. (2007) V_0355, V_5187 PLA2G6, MAFF, TMEM184B, CSNK1E 22 q13.31 45638230 46267646 4% UPK3A, FAM118A, SMC1B, RIBC2, FBLN1, ATXN10 V_4134 22 q13.31-q13.33 48164263 50209339 4% FAM19A5, C22orf34, BRD1 V_0239_LC20651_Iafrate et al. (2004), V_5192_LC20651_Wong et al. (2007), V_5193_LC20651_Wong et al. V_0239, V_4138, V_4139, V_4140, V_5192, (2007) V_5193, V_7354, V_8256, V_9854, V_23655 Supplementary Table 2 Page 1
Supplementary Table 2: List of genes within regions of recurrent (at least 2/50 tumours) amplification (Log2 ratios>0.4) in 50 ovarian clear cell carcinomas.
HUGO gene symbol Ensembl ID Chromosome Start (bp) End (bp) Cytoband amp.cases frequency.all ACTL9 ENSG00000181786 19 8807751 8809172 p13.2 ov1,ov107,ov108,ov11,ov20,ov24,ov3,ov31,ov51,ov53,ov54,ov58,ov60,ov61,ov66,ov80,ov93,ov94 18 OR2Z1 ENSG00000181733 19 8841316 8842371 p13.2 ov1,ov107,ov108,ov11,ov20,ov24,ov3,ov31,ov51,ov53,ov54,ov58,ov60,ov61,ov66,ov80,ov93,ov94 18 ZNF558 ENSG00000167785 19 8920382 8942935 p13.2 ov1,ov107,ov108,ov11,ov20,ov24,ov3,ov31,ov51,ov53,ov54,ov58,ov60,ov61,ov66,ov80,ov93,ov94 18 MBD3L1 ENSG00000170948 19 8953332 8953995 p13.2 ov1,ov107,ov108,ov11,ov20,ov24,ov3,ov31,ov51,ov53,ov54,ov58,ov60,ov61,ov66,ov80,ov93,ov94 18 TSHZ2 ENSG00000182463 20 51588946 52107482 q13.2 ov100,ov11,ov33,ov34,ov39,ov5074,ov51,ov54,ov57,ov66,ov78,ov94 12 MOCS3 ENSG00000124217 20 49575363 49577820 q13.13 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80,ov94 11 ZNF217 ENSG00000171940 20 52183604 52225431 q13.2 ov11,ov33,ov34,ov39,ov5074,ov51,ov54,ov57,ov58,ov78,ov80 11 SH3D20 ENSG00000159314 17 43471275 43511119 q21.31 ov1,ov102,ov108,ov14,ov33,ov58,ov60,ov61,ov65,ov80 10 PKIG ENSG00000168734 20 43160436 43252888 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 ADA ENSG00000196839 20 43248164 43280376 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 WISP2 ENSG00000064205 20 43343485 43357150 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 KCNK15 ENSG00000124249 20 43374488 43379664 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 RIMS4 ENSG00000101098 20 43380449 43438912 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 YWHAB ENSG00000166913 20 43514344 43537160 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 PABPC1L ENSG00000101104 20 43538703 43587676 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 TOMM34 ENSG00000025772 20 43570772 43589114 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 STK4 ENSG00000101109 20 43595120 43708618 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 KCNS1 ENSG00000124134 20 43720951 43729753 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 WFDC5 ENSG00000175121 20 43738093 43743813 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 WFDC12 ENSG00000168703 20 43752067 43753106 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 PI3 ENSG00000124102 20 43803540 43805184 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 SEMG1 ENSG00000124233 20 43835674 43838408 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 SEMG2 ENSG00000124157 20 43850010 43853099 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 SLPI ENSG00000124107 20 43880879 43883206 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 MATN4 ENSG00000124159 20 43922085 43936967 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 RBPJL ENSG00000124232 20 43935491 43946462 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 SDC4 ENSG00000124145 20 43953931 43977064 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 SYS1 ENSG00000204070 20 43990577 44039250 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 TP53TG5 ENSG00000124251 20 44002528 44007033 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 EYA2 ENSG00000064655 20 45523509 45817490 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 10 KCNG1 ENSG00000026559 20 49620194 49639675 q13.13 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80,ov94 10 NFATC2 ENSG00000101096 20 50007765 50179168 q13.2 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80,ov94 10 ATP9A ENSG00000054793 20 50213053 50384908 q13.2 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80,ov94 10 ZFP64 ENSG00000020256 20 50668202 50808524 q13.2 ov100,ov11,ov33,ov34,ov40,ov5074,ov54,ov66,ov78,ov94 10 BCAS1 ENSG00000064787 20 52553316 52687304 q13.2 ov33,ov34,ov39,ov5074,ov51,ov54,ov57,ov58,ov78,ov94 10 MAP3K14 ENSG00000006062 17 43340488 43394414 q21.31 ov1,ov102,ov14,ov33,ov58,ov60,ov61,ov65,ov80 9 PLEKHM1 ENSG00000225190 17 43513267 43568110 q21.31 ov1,ov102,ov108,ov14,ov33,ov58,ov60,ov61,ov80 9 KIAA1267 ENSG00000120071 17 44107334 44270166 q21.31 ov1,ov102,ov108,ov14,ov2,ov33,ov58,ov60,ov61 9 PVRL2 ENSG00000130202 19 45349393 45392485 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 TOMM40 ENSG00000130204 19 45394477 45406935 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 APOE ENSG00000130203 19 45409039 45412649 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 APOC1 ENSG00000130208 19 45417921 45422606 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 APOC4 ENSG00000224916 19 45445495 45448751 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 APOC2 ENSG00000234906 19 45449243 45452814 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 CLPTM1 ENSG00000104853 19 45458638 45496598 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 RELB ENSG00000104856 19 45504699 45541452 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 SFRS16 ENSG00000104859 19 45542298 45574213 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 ZNF296 ENSG00000170684 19 45574759 45579688 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 GEMIN7 ENSG00000142252 19 45582518 45594782 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 LRRC68 ENSG00000104866 19 45596218 45651321 q13.32 ov1,ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov66 9 PTPRT ENSG00000196090 20 40701392 41818610 q13.11 ov100,ov11,ov33,ov34,ov40,ov5074,ov54,ov66,ov78 9 SFRS6 ENSG00000124193 20 42086504 42092242 q13.11 ov100,ov11,ov33,ov34,ov40,ov5074,ov54,ov66,ov78 9 L3MBTL ENSG00000185513 20 42136320 42179590 q13.12 ov100,ov11,ov33,ov34,ov40,ov5074,ov54,ov66,ov78 9 SGK2 ENSG00000101049 20 42187608 42214317 q13.12 ov100,ov11,ov33,ov34,ov40,ov5074,ov54,ov66,ov78 9 IFT52 ENSG00000101052 20 42219579 42275862 q13.12 ov100,ov11,ov33,ov34,ov40,ov5074,ov54,ov66,ov78 9 MYBL2 ENSG00000101057 20 42295709 42345123 q13.12 ov100,ov11,ov33,ov34,ov40,ov5074,ov54,ov66,ov78 9 GTSF1L ENSG00000124196 20 42354802 42355642 q13.12 ov100,ov11,ov33,ov34,ov40,ov5074,ov54,ov66,ov78 9 TOX2 ENSG00000124191 20 42543492 42698256 q13.12 ov100,ov11,ov33,ov34,ov40,ov5074,ov54,ov66,ov78 9 C20orf111 ENSG00000132823 20 42825136 42839431 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 GDAP1L1 ENSG00000124194 20 42875908 42909013 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 FITM2 ENSG00000197296 20 42935197 42939889 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 R3HDML ENSG00000101074 20 42965626 42979875 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 HNF4A ENSG00000101076 20 42984340 43060030 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 C20orf62 ENSG00000168746 20 43080624 43093984 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 TTPAL ENSG00000124120 20 43104544 43123217 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 SERINC3 ENSG00000132824 20 43124862 43150726 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 PIGT ENSG00000124155 20 44044724 44054884 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 WFDC2 ENSG00000101443 20 44098394 44110171 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 SPINT3 ENSG00000101446 20 44141101 44144264 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 WFDC6 ENSG00000101448 20 44162836 44176391 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 WFDC8 ENSG00000158901 20 44179791 44207965 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 WFDC9 ENSG00000180205 20 44236578 44259907 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 WFDC10A ENSG00000180305 20 44258384 44259835 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 WFDC11 ENSG00000180083 20 44277202 44298909 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 WFDC10B ENSG00000182931 20 44313290 44333658 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 WFDC13 ENSG00000168634 20 44330655 44337456 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 SPINT4 ENSG00000149651 20 44350988 44354468 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 C20orf168 ENSG00000168630 20 44378559 44378713 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 WFDC3 ENSG00000124116 20 44388981 44420547 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 DNTTIP1 ENSG00000101457 20 44420576 44440066 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 UBE2C ENSG00000175063 20 44441255 44445596 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 TNNC2 ENSG00000101470 20 44451853 44462384 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 SNX21 ENSG00000124104 20 44462470 44474924 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 ACOT8 ENSG00000101473 20 44470361 44486035 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 ZSWIM3 ENSG00000132801 20 44486256 44507767 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 ZSWIM1 ENSG00000168612 20 44509866 44513905 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 C20orf165 ENSG00000149634 20 44515131 44516238 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 NEURL2 ENSG00000124257 20 44517267 44519901 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 CTSA ENSG00000064601 20 44519105 44527459 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 PLTP ENSG00000100979 20 44527399 44540819 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 PCIF1 ENSG00000100982 20 44563317 44576657 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 ZNF335 ENSG00000198026 20 44577293 44600833 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 MMP9 ENSG00000100985 20 44637547 44645199 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 SLC12A5 ENSG00000124140 20 44650329 44688789 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 NCOA5 ENSG00000124160 20 44689636 44718591 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 CD40 ENSG00000101017 20 44746906 44758384 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 CDH22 ENSG00000149654 20 44802376 44880334 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 SLC35C2 ENSG00000080189 20 44978167 44993064 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 ELMO2 ENSG00000062598 20 44994689 45035271 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 ZNF663 ENSG00000215452 20 45042871 45087915 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 ZNF840 ENSG00000184617 20 45108995 45121279 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 ZNF334 ENSG00000198185 20 45129709 45142198 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 C20orf123 ENSG00000149635 20 45169585 45179213 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 SLC13A3 ENSG00000158296 20 45186463 45298778 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 TP53RK ENSG00000172315 20 45313005 45318276 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 SLC2A10 ENSG00000197496 20 45338126 45364983 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov80 9 ZMYND8 ENSG00000101040 20 45837859 45985474 q13.12 ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 9 NCOA3 ENSG00000124151 20 46130646 46285616 q13.12 ov11,ov33,ov40,ov5074,ov54,ov58,ov66,ov78,ov80 9 TMEM189 ENSG00000124208 20 48697661 48770271 q13.13 ov11,ov33,ov5074,ov54,ov58,ov59,ov78,ov80,ov94 9 CEBPB ENSG00000172216 20 48807376 48809212 q13.13 ov11,ov33,ov5074,ov54,ov58,ov59,ov78,ov80,ov94 9 PTPN1 ENSG00000196396 20 49126891 49201088 q13.13 ov11,ov33,ov5074,ov54,ov58,ov66,ov78,ov80,ov94 9 FAM65C ENSG00000042062 20 49202645 49308065 q13.13 ov11,ov33,ov5074,ov54,ov58,ov66,ov78,ov80,ov94 9 PARD6B ENSG00000124171 20 49348081 49373332 q13.13 ov11,ov33,ov5074,ov54,ov58,ov66,ov78,ov80,ov94 9 BCAS4 ENSG00000124243 20 49411467 49493713 q13.13 ov11,ov33,ov5074,ov54,ov58,ov66,ov78,ov80,ov94 9 ADNP ENSG00000101126 20 49505585 49547527 q13.13 ov11,ov33,ov5074,ov54,ov58,ov66,ov78,ov80,ov94 9 DPM1 ENSG00000000419 20 49551412 49575087 q13.13 ov11,ov33,ov5074,ov54,ov58,ov66,ov78,ov80,ov94 9 CYP24A1 ENSG00000019186 20 52769988 52790516 q13.2 ov33,ov34,ov39,ov5074,ov54,ov57,ov58,ov78,ov94 9 PFDN4 ENSG00000101132 20 52824502 52836491 q13.2 ov33,ov34,ov39,ov5074,ov54,ov57,ov58,ov78,ov94 9 DOK5 ENSG00000101134 20 53092163 53267690 q13.2 ov33,ov34,ov40,ov5074,ov54,ov57,ov58,ov78,ov94 9 BMP7 ENSG00000101144 20 55743809 55841707 q13.31 ov11,ov33,ov40,ov5074,ov54,ov55,ov66,ov78,ov80 9 REXO1L1 ENSG00000205176 8 86568695 86575726 q21.2 ov102,ov20,ov3,ov31,ov78,ov88,ov93,ov94 8 PTK2 ENSG00000169398 8 141668501 142011332 q24.3 ov11,ov20,ov58,ov59,ov78,ov80,ov88,ov94 8 DENND3 ENSG00000105339 8 142138720 142205895 q24.3 ov11,ov20,ov58,ov59,ov78,ov80,ov88,ov94 8 SLC45A4 ENSG00000022567 8 142220870 142264328 q24.3 ov11,ov20,ov58,ov59,ov78,ov80,ov88,ov94 8 IKZF3 ENSG00000161405 17 37921198 38020441 q12 ov102,ov107,ov108,ov33,ov34,ov48,ov58,ov61 8 ZPBP2 ENSG00000186075 17 38024455 38034142 q12 ov102,ov107,ov108,ov33,ov34,ov48,ov58,ov61 8 FAM134C ENSG00000141699 17 40731540 40761402 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65,ov80 8 TUBG1 ENSG00000131462 17 40761694 40767247 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65,ov80 8 TUBG2 ENSG00000037042 17 40811266 40819021 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65,ov80 8 PLEKHH3 ENSG00000068137 17 40819937 40829048 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65,ov80 8 CRHR1 ENSG00000120088 17 43861646 43913193 q21.31 ov1,ov102,ov108,ov14,ov2,ov33,ov58,ov61 8 MAPT ENSG00000186868 17 43971750 44105700 q21.31 ov1,ov102,ov108,ov14,ov2,ov33,ov58,ov61 8 LRRC37A ENSG00000176681 17 44371149 44415160 q21.31 ov1,ov102,ov108,ov14,ov2,ov33,ov60,ov61 8 C1QTNF1 ENSG00000173918 17 77020251 77045870 q25.3 ov1,ov108,ov33,ov56,ov61,ov65,ov77,ov80 8 ENGASE ENSG00000167280 17 77071019 77084681 q25.3 ov1,ov108,ov33,ov56,ov61,ov65,ov77,ov80 8 ZNF180 ENSG00000167384 19 44979861 45004574 q13.31 ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov81 8 CEACAM20 ENSG00000176395 19 45005729 45033811 q13.31 ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov81 8 PVR ENSG00000073008 19 45147098 45169429 q13.31 ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov81 8 CEACAM19 ENSG00000186567 19 45174724 45187625 q13.31 ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov81 8 CEACAM16 ENSG00000213892 19 45202492 45213986 q13.32 ov102,ov11,ov2,ov40,ov58,ov59,ov61,ov81 8 NKPD1 ENSG00000179846 19 45655161 45661984 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 TRAPPC6A ENSG00000007255 19 45666187 45681485 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 BLOC1S3 ENSG00000189114 19 45682003 45685057 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 EXOC3L2 ENSG00000130201 19 45715879 45737469 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 MARK4 ENSG00000007047 19 45754550 45808541 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 CKM ENSG00000104879 19 45809672 45826134 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 KLC3 ENSG00000104892 19 45843998 45854778 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 ERCC2 ENSG00000104884 19 45854246 45873845 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 PPP1R13L ENSG00000104881 19 45882892 45909607 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 CD3EAP ENSG00000117877 19 45909467 45914024 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 ERCC1 ENSG00000012061 19 45912872 45927177 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 FOSB ENSG00000125740 19 45971253 45978414 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 RTN2 ENSG00000125744 19 45988550 46000313 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 VASP ENSG00000125753 19 46010688 46030236 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 OPA3 ENSG00000125741 19 46031027 46088122 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 GPR4 ENSG00000177464 19 46093025 46105466 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 EML2 ENSG00000125746 19 46112660 46142669 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 GIPR ENSG00000010310 19 46171502 46185704 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 SNRPD2 ENSG00000125743 19 46190719 46195442 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 QPCTL ENSG00000011478 19 46195932 46206586 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 FBXO46 ENSG00000177051 19 46213887 46234151 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 SIX5 ENSG00000177045 19 46268044 46272312 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 DMPK ENSG00000104936 19 46272978 46285815 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 DMWD ENSG00000185800 19 46286264 46296060 q13.32 ov1,ov11,ov2,ov40,ov58,ov59,ov61,ov66 8 KIAA1219 ENSG00000170471 20 37101486 37207504 q11.23 ov100,ov11,ov33,ov54,ov58,ov65,ov78,ov80 8 ADIG ENSG00000182035 20 37209838 37217106 q11.23 ov100,ov11,ov33,ov54,ov58,ov65,ov78,ov80 8 C20orf95 ENSG00000124143 20 37252024 37279678 q11.23 ov100,ov11,ov33,ov54,ov58,ov65,ov78,ov80 8 CHD6 ENSG00000124177 20 40031170 40247133 q12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78 8 JPH2 ENSG00000149596 20 42740337 42816218 q13.12 ov100,ov11,ov33,ov40,ov5074,ov54,ov66,ov78 8 B4GALT5 ENSG00000158470 20 48249485 48330421 q13.13 ov11,ov33,ov5074,ov58,ov66,ov78,ov80,ov94 8 SLC9A8 ENSG00000197818 20 48429250 48508772 q13.13 ov11,ov33,ov5074,ov58,ov66,ov78,ov80,ov94 8 SPATA2 ENSG00000158480 20 48519931 48532080 q13.13 ov11,ov33,ov5074,ov58,ov66,ov78,ov80,ov94 8 SALL4 ENSG00000101115 20 50400585 50419048 q13.2 ov11,ov33,ov40,ov5074,ov54,ov66,ov78,ov94 8 TFAP2C ENSG00000087510 20 55204358 55214336 q13.31 ov11,ov33,ov40,ov5074,ov54,ov55,ov66,ov78 8 SPO11 ENSG00000054796 20 55904815 55919043 q13.31 ov11,ov33,ov40,ov5074,ov54,ov55,ov66,ov78 8 RAE1 ENSG00000101146 20 55926145 55954267 q13.31 ov11,ov33,ov40,ov5074,ov54,ov55,ov66,ov78 8 RBM38 ENSG00000132819 20 55966463 55984389 q13.31 ov11,ov33,ov40,ov5074,ov54,ov55,ov66,ov78 8 CTCFL ENSG00000124092 20 56064185 56100635 q13.31 ov11,ov33,ov40,ov5074,ov54,ov55,ov66,ov78 8 PCK1 ENSG00000124253 20 56136137 56141505 q13.31 ov11,ov33,ov40,ov5074,ov54,ov55,ov66,ov78 8 ZBP1 ENSG00000124256 20 56178906 56195529 q13.31 ov11,ov33,ov40,ov5074,ov54,ov55,ov66,ov78 8 PMEPA1 ENSG00000124225 20 56223454 56286541 q13.31 ov11,ov33,ov40,ov5074,ov54,ov55,ov66,ov78 8 PHACTR3 ENSG00000087495 20 58152564 58422766 q13.32 ov100,ov33,ov39,ov40,ov5074,ov54,ov58,ov78 8 SYCP2 ENSG00000196074 20 58438621 58508710 q13.33 ov100,ov33,ov39,ov40,ov5074,ov54,ov58,ov78 8 KLHL38 ENSG00000175946 8 124657915 124665190 q24.13 ov11,ov20,ov59,ov78,ov80,ov88,ov94 7 ANXA13 ENSG00000104537 8 124693035 124749647 q24.13 ov11,ov20,ov59,ov78,ov80,ov88,ov94 7 FAM91A1 ENSG00000176853 8 124780696 124827688 q24.13 ov11,ov20,ov59,ov78,ov80,ov88,ov94 7 COL22A1 ENSG00000169436 8 139600478 139926236 q24.3 ov11,ov20,ov51,ov59,ov78,ov88,ov94 7 NEUROD2 ENSG00000171532 17 37760022 37764175 q12 ov107,ov108,ov33,ov34,ov48,ov58,ov61 7 PPP1R1B ENSG00000131771 17 37783179 37792878 q12 ov107,ov108,ov33,ov34,ov48,ov58,ov61 7 STARD3 ENSG00000131748 17 37793412 37819722 q12 ov107,ov108,ov33,ov34,ov48,ov58,ov61 7 TCAP ENSG00000173991 17 37816848 37822800 q12 ov107,ov108,ov33,ov34,ov48,ov58,ov61 7 PNMT ENSG00000141744 17 37824234 37826728 q12 ov107,ov108,ov33,ov34,ov48,ov58,ov61 7 PERLD1 ENSG00000161395 17 37827376 37844310 q12 ov107,ov108,ov33,ov34,ov48,ov58,ov61 7 ERBB2 ENSG00000141736 17 37844393 37884915 q12 ov107,ov108,ov33,ov34,ov48,ov58,ov61 7 C17orf37 ENSG00000141741 17 37885411 37886788 q12 ov107,ov108,ov33,ov34,ov48,ov58,ov61 7 GRB7 ENSG00000141738 17 37894187 37903544 q12 ov107,ov108,ov33,ov34,ov48,ov58,ov61 7 GSDMB ENSG00000073605 17 38060848 38074903 q12 ov102,ov107,ov108,ov33,ov48,ov58,ov61 7 ORMDL3 ENSG00000172057 17 38077296 38083854 q12 ov102,ov107,ov108,ov33,ov48,ov58,ov61 7 GSDMA ENSG00000167914 17 38119226 38134019 q21.1 ov102,ov107,ov108,ov33,ov48,ov58,ov61 7 PSMD3 ENSG00000108344 17 38137060 38154212 q21.1 ov102,ov107,ov108,ov33,ov48,ov58,ov61 7 CSF3 ENSG00000108342 17 38171688 38174066 q21.1 ov102,ov107,ov108,ov33,ov48,ov58,ov61 7 MED24 ENSG00000008838 17 38175350 38210889 q21.1 ov102,ov107,ov108,ov33,ov48,ov58,ov61 7 KRT15 ENSG00000171346 17 39669998 39678781 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 KRT19 ENSG00000171345 17 39679870 39684641 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 KRT9 ENSG00000171403 17 39722093 39728310 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 KRT14 ENSG00000186847 17 39738544 39743173 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 KRT16 ENSG00000186832 17 39766033 39769079 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 KRT17 ENSG00000128422 17 39775692 39780882 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 EIF1 ENSG00000173812 17 39845127 39847898 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 GAST ENSG00000184502 17 39868613 39872220 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 HAP1 ENSG00000173805 17 39873994 39890886 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 JUP ENSG00000173801 17 39910856 39943183 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 FKBP10 ENSG00000141756 17 39968962 39979469 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 NT5C3L ENSG00000141698 17 39981424 39992515 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 KLHL10 ENSG00000161594 17 39991937 40004599 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 KLHL11 ENSG00000178502 17 40009799 40021650 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 ACLY ENSG00000131473 17 40023184 40075272 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 TTC25 ENSG00000204815 17 40086898 40117648 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 RAB5C ENSG00000108774 17 40276998 40307022 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 KCNH4 ENSG00000089558 17 40308913 40333296 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 HCRT ENSG00000161610 17 40336078 40337470 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 GHDC ENSG00000167925 17 40341108 40346550 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 STAT5B ENSG00000173757 17 40351196 40428725 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 STAT5A ENSG00000126561 17 40439565 40463958 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 STAT3 ENSG00000168610 17 40465343 40540513 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 PTRF ENSG00000177469 17 40554467 40575274 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 ATP6V0A1 ENSG00000033627 17 40610862 40674596 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 NAGLU ENSG00000108784 17 40687951 40696464 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 HSD17BP1 ENSG00000108785 17 40698782 40700328 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 HSD17B1 ENSG00000108786 17 40701232 40707224 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 COASY ENSG00000068120 17 40714092 40718295 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 MLX ENSG00000108788 17 40719078 40725220 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 PSMC3IP ENSG00000131470 17 40724329 40729747 q21.2 ov1,ov102,ov108,ov34,ov58,ov61,ov65 7 CCR10 ENSG00000184451 17 40831420 40833845 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 CNTNAP1 ENSG00000108797 17 40834632 40852010 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 EZH1 ENSG00000108799 17 40852294 40897071 q21.2 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 RAMP2 ENSG00000131477 17 40913205 40915059 q21.31 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 VPS25 ENSG00000131475 17 40925454 40931616 q21.31 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 WNK4 ENSG00000126562 17 40932696 40949061 q21.31 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 CCDC56 ENSG00000183978 17 40949653 40950719 q21.31 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 CNTD1 ENSG00000176563 17 40950854 40963604 q21.31 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 TMEM106A ENSG00000184988 17 41363894 41371589 q21.31 ov1,ov102,ov108,ov58,ov61,ov65,ov80 7 DHX8 ENSG00000067596 17 41561334 41601680 q21.31 ov1,ov102,ov31,ov58,ov61,ov65,ov80 7 ETV4 ENSG00000175832 17 41605212 41623762 q21.31 ov1,ov102,ov31,ov58,ov61,ov65,ov80 7 MEOX1 ENSG00000005102 17 41717770 41739262 q21.31 ov1,ov102,ov31,ov58,ov61,ov65,ov80 7 SOST ENSG00000167941 17 41831103 41836156 q21.31 ov1,ov102,ov31,ov58,ov61,ov65,ov80 7 DUSP3 ENSG00000108861 17 41843490 41856368 q21.31 ov1,ov102,ov31,ov58,ov61,ov65,ov80 7 MPP3 ENSG00000161647 17 41878167 41910538 q21.31 ov1,ov102,ov31,ov58,ov61,ov65,ov80 7 CD300LG ENSG00000161649 17 41924516 41940994 q21.31 ov1,ov102,ov31,ov58,ov61,ov65,ov80 7 MPP2 ENSG00000108852 17 41952727 41985113 q21.31 ov1,ov102,ov31,ov58,ov61,ov65,ov80 7 C17orf88 ENSG00000227580 17 41994576 41995326 q21.31 ov1,ov102,ov31,ov58,ov61,ov65,ov80 7 PPY ENSG00000108849 17 42018172 42019833 q21.31 ov1,ov102,ov31,ov58,ov61,ov65,ov80 7 PYY ENSG00000131096 17 42030111 42081837 q21.31 ov1,ov102,ov31,ov58,ov61,ov65,ov80 7 ATXN7L3 ENSG00000087152 17 42269174 42275529 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 UBTF ENSG00000108312 17 42282402 42298250 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 Supplementary Table 2 Page 2
SLC4A1 ENSG00000004939 17 42325758 42345502 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 RUNDC3A ENSG00000108309 17 42385927 42396038 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 SLC25A39 ENSG00000013306 17 42396993 42402217 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 GRN ENSG00000030582 17 42422491 42430470 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 FAM171A2 ENSG00000161682 17 42431101 42441235 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 ITGA2B ENSG00000005961 17 42449550 42466873 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 GPATCH8 ENSG00000186566 17 42472652 42580802 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 FZD2 ENSG00000180340 17 42634925 42636907 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 CCDC43 ENSG00000180329 17 42754805 42767165 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 DBF4B ENSG00000161692 17 42785976 42829631 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 ADAM11 ENSG00000073670 17 42836568 42859214 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 GJC1 ENSG00000182963 17 42875816 42908179 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 HIGD1B ENSG00000131097 17 42925279 42927840 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 EFTUD2 ENSG00000108883 17 42927655 42976993 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 CCDC103 ENSG00000167131 17 42977084 42980948 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 FAM187A ENSG00000214447 17 42977142 42982758 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 GFAP ENSG00000131095 17 42982993 42992914 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 KIF18B ENSG00000186185 17 43003360 43025082 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 C1QL1 ENSG00000131094 17 43037062 43045644 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 DCAKD ENSG00000172992 17 43100710 43138473 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 NMT1 ENSG00000136448 17 43138680 43186377 q21.31 ov1,ov102,ov2,ov58,ov61,ov65,ov80 7 HEXIM1 ENSG00000186834 17 43224684 43229468 q21.31 ov1,ov102,ov14,ov58,ov61,ov65,ov80 7 HEXIM2 ENSG00000168517 17 43238271 43247406 q21.31 ov1,ov102,ov14,ov58,ov61,ov65,ov80 7 FMNL1 ENSG00000184922 17 43299292 43324681 q21.31 ov1,ov102,ov14,ov58,ov61,ov65,ov80 7 C17orf46 ENSG00000184361 17 43331760 43339479 q21.31 ov1,ov102,ov14,ov58,ov61,ov65,ov80 7 C17orf69 ENSG00000167159 17 43717948 43719222 q21.31 ov1,ov102,ov108,ov14,ov2,ov33,ov61 7 LRRC37A2 ENSG00000238083 17 44590076 44633016 q21.31 ov1,ov102,ov108,ov14,ov33,ov60,ov61 7 ARL17P1 ENSG00000185829 17 44594069 44657088 q21.31 ov1,ov102,ov108,ov14,ov33,ov60,ov61 7 NSF ENSG00000073969 17 44668038 44834833 q21.31 ov1,ov102,ov108,ov14,ov33,ov60,ov61 7 CDC27 ENSG00000004897 17 45195310 45266665 q21.32 ov102,ov108,ov14,ov33,ov58,ov61,ov80 7 TNRC6C ENSG00000078687 17 76000249 76104916 q25.3 ov1,ov56,ov61,ov65,ov66,ov77,ov80 7 CBX8 ENSG00000141570 17 77768178 77775332 q25.3 ov108,ov33,ov40,ov58,ov61,ov65,ov80 7 CBX4 ENSG00000141582 17 77806956 77813229 q25.3 ov108,ov33,ov40,ov58,ov61,ov65,ov80 7 TBC1D16 ENSG00000167291 17 77913821 78009647 q25.3 ov108,ov33,ov40,ov58,ov61,ov65,ov80 7 SAMD4B ENSG00000179134 19 39833108 39875535 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 PAF1 ENSG00000006712 19 39876275 39881746 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 MED29 ENSG00000063322 19 39881963 39891201 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 ZFP36 ENSG00000128016 19 39897453 39900013 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 PLEKHG2 ENSG00000090924 19 39903750 39919054 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 RPS16 ENSG00000105193 19 39923852 39926618 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 SUPT5H ENSG00000196235 19 39936186 39967310 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 TIMM50 ENSG00000105197 19 39971052 39981528 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 DLL3 ENSG00000090932 19 39989557 39999118 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 EID2B ENSG00000176401 19 40021630 40023494 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 EID2 ENSG00000176396 19 40028890 40030870 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 LGALS13 ENSG00000105198 19 40093164 40098113 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 LGALS14 ENSG00000006659 19 40194946 40200087 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 CLC ENSG00000105205 19 40221896 40228668 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 LEUTX ENSG00000213921 19 40267231 40276775 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 DYRK1B ENSG00000105204 19 40315993 40324841 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 FBL ENSG00000105202 19 40325094 40337054 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 FCGBP ENSG00000090920 19 40353964 40440533 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 PSMC4 ENSG00000013275 19 40477073 40487351 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 ZNF546 ENSG00000187187 19 40502943 40523514 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 ZNF780B ENSG00000128000 19 40534167 40562116 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 ZNF780A ENSG00000197782 19 40575060 40596845 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 MAP3K10 ENSG00000130758 19 40697651 40721481 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 TTC9B ENSG00000174521 19 40721965 40724306 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 CNTD2 ENSG00000105219 19 40728122 40732597 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 AKT2 ENSG00000105221 19 40736224 40791265 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 C19orf47 ENSG00000160392 19 40826973 40854421 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 PLD3 ENSG00000105223 19 40854332 40884390 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 HIPK4 ENSG00000160396 19 40885179 40896094 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 PRX ENSG00000105227 19 40899672 40919273 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 SERTAD1 ENSG00000197019 19 40928411 40931932 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 SERTAD3 ENSG00000167565 19 40946749 40950282 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 BLVRB ENSG00000090013 19 40953693 40971725 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 SPTBN4 ENSG00000160460 19 40973126 41082364 q13.2 ov1,ov11,ov40,ov55,ov58,ov61,ov81 7 CEACAM8 ENSG00000124469 19 43084396 43099082 q13.2 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 C19orf61 ENSG00000105771 19 44235301 44259142 q13.31 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 ZNF221 ENSG00000159882 19 44268574 44637255 q13.31 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 KCNN4 ENSG00000104783 19 44270685 44285409 q13.31 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 LYPD5 ENSG00000159871 19 44300080 44324808 q13.31 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 ZNF404 ENSG00000176222 19 44376519 44384291 q13.31 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 ZNF45 ENSG00000124459 19 44416783 44439411 q13.31 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 ZNF155 ENSG00000204920 19 44488355 44502477 q13.31 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 ZNF230 ENSG00000159885 19 44529494 44537260 q13.31 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 ZNF223 ENSG00000178386 19 44556164 44572142 q13.31 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 ZNF284 ENSG00000186026 19 44576355 44593765 q13.31 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 ZNF224 ENSG00000186019 19 44598497 44612477 q13.31 ov11,ov2,ov40,ov45,ov58,ov61,ov81 7 BCL3 ENSG00000069399 19 45251978 45263301 q13.32 ov102,ov11,ov2,ov40,ov58,ov59,ov61 7 CBLC ENSG00000142273 19 45281126 45303903 q13.32 ov102,ov11,ov2,ov40,ov58,ov59,ov61 7 BCAM ENSG00000187244 19 45312338 45324677 q13.32 ov102,ov11,ov2,ov40,ov58,ov59,ov61 7 RSHL1 ENSG00000104941 19 46298969 46318577 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 SYMPK ENSG00000125755 19 46318700 46366548 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 FOXA3 ENSG00000170608 19 46367518 46377054 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 IRF2BP1 ENSG00000170604 19 46386866 46389376 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 MYPOP ENSG00000176182 19 46393285 46405862 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 NANOS2 ENSG00000188425 19 46416475 46418036 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 NOVA2 ENSG00000104967 19 46442771 46476657 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 CCDC61 ENSG00000104983 19 46498339 46521874 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 PGLYRP1 ENSG00000008438 19 46522415 46526304 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 IGFL4 ENSG00000204869 19 46543006 46546197 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 IGFL3 ENSG00000188624 19 46623328 46627931 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 IGFL2 ENSG00000204866 19 46651039 46664559 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 HIF3A ENSG00000124440 19 46800305 46846690 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 PPP5C ENSG00000011485 19 46850294 46894109 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 CCDC8 ENSG00000169515 19 46914451 46916067 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 PNMAL1 ENSG00000182013 19 46969750 46974820 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 PNMAL2 ENSG00000204851 19 46994453 46998722 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 CALM3 ENSG00000160014 19 47104512 47114038 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 PTGIR ENSG00000160013 19 47123726 47128354 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 GNG8 ENSG00000167414 19 47137333 47137942 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 DACT3 ENSG00000197380 19 47150869 47164395 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 PRKD2 ENSG00000105287 19 47177574 47220384 q13.32 ov1,ov11,ov2,ov40,ov58,ov61,ov66 7 C19orf68 ENSG00000185453 19 48673949 48700877 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 CARD8 ENSG00000105483 19 48711361 48753067 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 ZNF114 ENSG00000178150 19 48774654 48790863 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 CCDC114 ENSG00000105479 19 48799710 48825151 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 EMP3 ENSG00000142227 19 48828629 48833811 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 TMEM143 ENSG00000161558 19 48835613 48867197 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 SYNGR4 ENSG00000105467 19 48867657 48879627 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 KDELR1 ENSG00000105438 19 48885827 48894810 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 GRIN2D ENSG00000105464 19 48898132 48948187 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 GRWD1 ENSG00000105447 19 48949062 48957154 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 KCNJ14 ENSG00000182324 19 48958766 48969367 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 CYTH2 ENSG00000105443 19 48972465 48985571 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 LMTK3 ENSG00000142235 19 48988528 49016446 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 SULT2B1 ENSG00000088002 19 49055429 49102683 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 FAM83E ENSG00000105523 19 49103857 49116694 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 SPACA4 ENSG00000177202 19 49110000 49110970 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 RPL18 ENSG00000063177 19 49118591 49122433 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 SPHK2 ENSG00000063176 19 49122548 49133973 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 DBP ENSG00000105516 19 49133820 49140639 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 CA11 ENSG00000063180 19 49141272 49149451 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 NTN5 ENSG00000142233 19 49164666 49176264 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 FUT2 ENSG00000176920 19 49199228 49209191 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 MAMSTR ENSG00000176909 19 49216255 49222978 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 RASIP1 ENSG00000105538 19 49223843 49243970 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 IZUMO1 ENSG00000182264 19 49244145 49250166 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 FUT1 ENSG00000174951 19 49251268 49258647 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 FGF21 ENSG00000105550 19 49259344 49261580 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 BCAT2 ENSG00000105552 19 49298322 49314301 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 HSD17B14 ENSG00000087076 19 49316279 49339934 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 PLEKHA4 ENSG00000105559 19 49340355 49371858 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 PPP1R15A ENSG00000087074 19 49375649 49379318 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 TULP2 ENSG00000104804 19 49384229 49401990 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 NUCB1 ENSG00000104805 19 49403577 49426528 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 DHDH ENSG00000104808 19 49436939 49448226 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 BAX ENSG00000087088 19 49458117 49465052 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 FTL ENSG00000087086 19 49468566 49470135 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 GYS1 ENSG00000104812 19 49471383 49496549 q13.33 ov11,ov2,ov40,ov55,ov58,ov61,ov65 7 VSTM2L ENSG00000132821 20 36531499 36573745 q11.23 ov11,ov33,ov54,ov58,ov65,ov78,ov80 7 KIAA0406 ENSG00000101407 20 36611409 36661863 q11.23 ov11,ov33,ov54,ov58,ov65,ov78,ov80 7 RPRD1B ENSG00000101413 20 36661948 36720761 q11.23 ov11,ov33,ov54,ov58,ov65,ov78,ov80 7 TGM2 ENSG00000198959 20 36756866 36794980 q11.23 ov11,ov33,ov54,ov58,ov65,ov78,ov80 7 KIAA1755 ENSG00000149633 20 36838907 36889174 q11.23 ov11,ov33,ov54,ov58,ov65,ov78,ov80 7 BPI ENSG00000101425 20 36888551 36965905 q11.23 ov11,ov33,ov54,ov58,ov65,ov78,ov80 7 LBP ENSG00000129988 20 36974885 37005653 q11.23 ov11,ov33,ov54,ov58,ov65,ov78,ov80 7 MAFB ENSG00000204103 20 39314488 39317880 q12 ov100,ov11,ov33,ov40,ov5074,ov54,ov78 7 TOP1 ENSG00000198900 20 39657462 39753127 q12 ov100,ov11,ov33,ov40,ov5074,ov54,ov78 7 ZHX3 ENSG00000174306 20 39807088 39946324 q12 ov100,ov11,ov33,ov40,ov5074,ov54,ov78 7 LPIN3 ENSG00000132793 20 39969560 39989221 q12 ov100,ov11,ov33,ov40,ov5074,ov54,ov78 7 EMILIN3 ENSG00000183798 20 39988606 39995498 q12 ov100,ov11,ov33,ov40,ov5074,ov54,ov78 7 SULF2 ENSG00000196562 20 46285656 46414808 q13.13 ov11,ov33,ov40,ov5074,ov66,ov78,ov80 7 PREX1 ENSG00000124126 20 47240793 47444420 q13.13 ov11,ov33,ov40,ov5074,ov78,ov80,ov94 7 ARFGEF2 ENSG00000124198 20 47538275 47653222 q13.13 ov11,ov33,ov40,ov5074,ov78,ov80,ov94 7 STAU1 ENSG00000124214 20 47729878 47804904 q13.13 ov11,ov33,ov5074,ov66,ov78,ov80,ov94 7 DDX27 ENSG00000124228 20 47835832 47860612 q13.13 ov11,ov33,ov5074,ov66,ov78,ov80,ov94 7 ZNFX1 ENSG00000124201 20 47855451 47894756 q13.13 ov11,ov33,ov5074,ov66,ov78,ov80,ov94 7 KCNB1 ENSG00000158445 20 47988505 48099181 q13.13 ov11,ov33,ov5074,ov66,ov78,ov80,ov94 7 PTGIS ENSG00000124212 20 48120411 48184707 q13.13 ov11,ov33,ov5074,ov66,ov78,ov80,ov94 7 RNF114 ENSG00000124226 20 48552914 48570420 q13.13 ov11,ov33,ov5074,ov58,ov78,ov80,ov94 7 SNAI1 ENSG00000124216 20 48599527 48605418 q13.13 ov11,ov33,ov5074,ov58,ov78,ov80,ov94 7 C20orf177 ENSG00000196227 20 58508819 58523735 q13.33 ov100,ov33,ov39,ov40,ov5074,ov54,ov78 7 PPP1R3D ENSG00000132825 20 58511894 58515352 q13.33 ov100,ov33,ov39,ov40,ov5074,ov54,ov78 7 NCALD ENSG00000104490 8 102698771 103137135 q22.3 ov20,ov78,ov80,ov88,ov93,ov94 6 ZHX2 ENSG00000178764 8 123793901 123986755 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 DERL1 ENSG00000136986 8 124025568 124054648 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 WDR67 ENSG00000156787 8 124084920 124164390 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 FAM83A ENSG00000147689 8 124194752 124222317 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 C8orf76 ENSG00000189376 8 124232231 124253617 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 ZHX1 ENSG00000165156 8 124260697 124286547 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 ATAD2 ENSG00000156802 8 124332093 124408705 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 WDYHV1 ENSG00000156795 8 124428965 124454260 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 FBXO32 ENSG00000156804 8 124515359 124553446 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 FER1L6 ENSG00000214814 8 124968225 125132302 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 C8orf54 ENSG00000181171 8 124996378 125053023 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 C8orf78 ENSG00000232476 8 125058314 125073033 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 TMEM65 ENSG00000164983 8 125323161 125384940 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 TRMT12 ENSG00000183665 8 125463048 125465262 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 RNF139 ENSG00000170881 8 125487008 125500846 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 TATDN1 ENSG00000147687 8 125500751 125551313 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 NDUFB9 ENSG00000147684 8 125551343 125562226 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 MTSS1 ENSG00000170873 8 125563031 125740730 q24.13 ov11,ov20,ov78,ov80,ov88,ov94 6 KIAA0196 ENSG00000164961 8 126036505 126104061 q24.13 ov11,ov20,ov59,ov78,ov88,ov94 6 NSMCE2 ENSG00000156831 8 126104083 126379367 q24.13 ov11,ov20,ov59,ov78,ov88,ov94 6 TRIB1 ENSG00000173334 8 126442563 126450642 q24.13 ov11,ov20,ov59,ov78,ov88,ov94 6 LRRC6 ENSG00000129295 8 133584449 133687813 q24.22 ov11,ov20,ov51,ov78,ov88,ov94 6 TMEM71 ENSG00000165071 8 133722194 133772914 q24.22 ov11,ov20,ov51,ov78,ov88,ov94 6 PHF20L1 ENSG00000129292 8 133787604 133861052 q24.22 ov11,ov20,ov51,ov78,ov88,ov94 6 TG ENSG00000042832 8 133879205 134147143 q24.22 ov11,ov20,ov51,ov78,ov88,ov94 6 SLA ENSG00000155926 8 134048974 134115310 q24.22 ov11,ov20,ov51,ov78,ov88,ov94 6 WISP1 ENSG00000104415 8 134203312 134241569 q24.22 ov11,ov20,ov51,ov78,ov88,ov94 6 NDRG1 ENSG00000104419 8 134249414 134309547 q24.22 ov11,ov20,ov51,ov78,ov88,ov94 6 ST3GAL1 ENSG00000008513 8 134467091 134584183 q24.22 ov11,ov20,ov51,ov78,ov88,ov94 6 ZFAT ENSG00000066827 8 135490033 135725281 q24.22 ov11,ov20,ov51,ov78,ov88,ov94 6 KHDRBS3 ENSG00000131773 8 136469700 136659838 q24.23 ov11,ov20,ov51,ov78,ov88,ov94 6 FAM135B ENSG00000147724 8 139142266 139509065 q24.23 ov11,ov20,ov59,ov78,ov88,ov94 6 THRA ENSG00000126351 17 38219063 38250118 q21.1 ov102,ov108,ov33,ov48,ov58,ov61 6 NR1D1 ENSG00000126368 17 38249041 38256973 q21.1 ov102,ov108,ov33,ov48,ov58,ov61 6 KRTAP9-2 ENSG00000198083 17 39346100 39412616 q21.2 ov102,ov108,ov33,ov58,ov61,ov80 6 KRTAP9-3 ENSG00000204873 17 39388723 39389280 q21.2 ov102,ov108,ov33,ov58,ov61,ov80 6 KRTAP9-8 ENSG00000187272 17 39394297 39395256 q21.2 ov102,ov108,ov33,ov58,ov61,ov80 6 KRTAP9-6 ENSG00000212659 17 39421591 39422893 q21.2 ov102,ov108,ov33,ov58,ov61,ov80 6 KRTAP9-7 ENSG00000180386 17 39431911 39432949 q21.2 ov102,ov108,ov33,ov58,ov61,ov80 6 KRTAP16-1 ENSG00000212657 17 39463952 39465505 q21.2 ov102,ov108,ov33,ov58,ov61,ov80 6 CNP ENSG00000173786 17 40118759 40129754 q21.2 ov1,ov102,ov108,ov58,ov61,ov65 6 NKIRAS2 ENSG00000168256 17 40169038 40177654 q21.2 ov1,ov102,ov108,ov58,ov61,ov65 6 ZNF385C ENSG00000187595 17 40177596 40215096 q21.2 ov1,ov102,ov108,ov58,ov61,ov65 6 DHX58 ENSG00000108771 17 40253453 40264751 q21.2 ov1,ov102,ov108,ov58,ov61,ov65 6 KAT2A ENSG00000108773 17 40265129 40273382 q21.2 ov1,ov102,ov108,ov58,ov61,ov65 6 HSPB9 ENSG00000197723 17 40274835 40275371 q21.2 ov1,ov102,ov108,ov58,ov61,ov65 6 BECN1 ENSG00000126581 17 40962150 40976310 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 PSME3 ENSG00000131467 17 40985423 40995775 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 AOC2 ENSG00000131480 17 40996609 41002722 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 AOC3 ENSG00000131471 17 41003201 41010138 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 G6PC ENSG00000131482 17 41052815 41065386 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 AARSD1 ENSG00000108825 17 41102547 41132545 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 RUNDC1 ENSG00000198863 17 41132582 41145707 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 RPL27 ENSG00000131469 17 41150446 41154956 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 IFI35 ENSG00000068079 17 41158769 41166475 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 VAT1 ENSG00000108828 17 41166622 41174459 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 RND2 ENSG00000108830 17 41177258 41184057 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 BRCA1 ENSG00000012048 17 41196314 41277468 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 NBR2 ENSG00000198496 17 41277609 41297245 q21.31 ov1,ov102,ov108,ov58,ov61,ov80 6 ARL4D ENSG00000175906 17 41476353 41478503 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 NAGS ENSG00000161653 17 42082032 42086433 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 TMEM101 ENSG00000091947 17 42088559 42092345 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 LSM12 ENSG00000161654 17 42112004 42144103 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 G6PC3 ENSG00000141349 17 42148118 42153712 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 HDAC5 ENSG00000108840 17 42154121 42201014 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 C17orf53 ENSG00000125319 17 42219326 42239844 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 ASB16 ENSG00000161664 17 42248074 42256451 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 C17orf65 ENSG00000168597 17 42253354 42264082 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 TMUB2 ENSG00000168591 17 42264354 42269098 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 PLCD3 ENSG00000161714 17 43189009 43209891 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 ACBD4 ENSG00000181513 17 43209967 43221539 q21.31 ov1,ov102,ov58,ov61,ov65,ov80 6 KCNH6 ENSG00000173826 17 61600695 61807165 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 MAP3K3 ENSG00000198909 17 61699801 61773667 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 LIMD2 ENSG00000136490 17 61773250 61777519 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 STRADA ENSG00000125695 17 61780196 61819215 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 CCDC47 ENSG00000108588 17 61822611 61851088 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 DDX42 ENSG00000198231 17 61851560 61896676 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 FTSJ3 ENSG00000108592 17 61896795 61905031 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 PSMC5 ENSG00000087191 17 61904810 61909386 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 SMARCD2 ENSG00000108604 17 61909441 61920351 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 CSH2 ENSG00000213218 17 61949372 61951116 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 GH2 ENSG00000136487 17 61957572 61959223 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 CSH1 ENSG00000136488 17 61972273 61974013 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 CSHL1 ENSG00000204414 17 61986087 61988618 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 GH1 ENSG00000189162 17 61994561 61996350 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 CD79B ENSG00000007312 17 62006100 62009714 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 C17orf72 ENSG00000224383 17 62075711 62081664 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 ICAM2 ENSG00000108622 17 62079956 62097994 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 ERN1 ENSG00000178607 17 62120390 62207502 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 TEX2 ENSG00000136478 17 62224796 62340653 q23.3 ov108,ov44,ov58,ov61,ov65,ov99 6 CASKIN2 ENSG00000177303 17 73496343 73511627 q25.1 ov108,ov58,ov60,ov61,ov65,ov80 6 Supplementary Table 2 Page 3
TSEN54 ENSG00000182173 17 73512609 73520820 q25.1 ov108,ov58,ov60,ov61,ov65,ov80 6 LLGL2 ENSG00000073350 17 73521783 73571289 q25.1 ov108,ov58,ov60,ov61,ov65,ov80 6 MYO15B ENSG00000188126 17 73592471 73616761 q25.1 ov108,ov58,ov60,ov61,ov65,ov80 6 RECQL5 ENSG00000108469 17 73622933 73663269 q25.1 ov108,ov58,ov60,ov61,ov65,ov80 6 SAP30BP ENSG00000161526 17 73663399 73704139 q25.1 ov108,ov58,ov60,ov61,ov65,ov80 6 ITGB4 ENSG00000132470 17 73717516 73753898 q25.1 ov108,ov58,ov60,ov61,ov65,ov80 6 GALK1 ENSG00000108479 17 73754018 73761307 q25.1 ov108,ov58,ov60,ov61,ov65,ov80 6 H3F3B ENSG00000132475 17 73772517 73775860 q25.1 ov108,ov58,ov60,ov61,ov65,ov80 6 UNK ENSG00000132478 17 73780681 73821886 q25.1 ov108,ov58,ov60,ov61,ov65,ov80 6 CANT1 ENSG00000171302 17 76987799 77005838 q25.3 ov108,ov33,ov56,ov61,ov65,ov80 6 ENPP7 ENSG00000182156 17 77704681 77716017 q25.3 ov108,ov33,ov40,ov61,ov65,ov80 6 CBX2 ENSG00000173894 17 77751993 77761378 q25.3 ov108,ov33,ov40,ov61,ov65,ov80 6 CCDC40 ENSG00000141519 17 78010435 78074410 q25.3 ov33,ov40,ov58,ov61,ov65,ov80 6 GAA ENSG00000171298 17 78075355 78093678 q25.3 ov33,ov40,ov58,ov61,ov65,ov80 6 EIF4A3 ENSG00000141543 17 78109019 78120938 q25.3 ov33,ov40,ov58,ov61,ov65,ov80 6 CARD14 ENSG00000141527 17 78152274 78182855 q25.3 ov33,ov40,ov58,ov61,ov65,ov80 6 MAP4K1 ENSG00000104814 19 39078281 39108643 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 EIF3K ENSG00000178982 19 39109722 39127595 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 ACTN4 ENSG00000130402 19 39138327 39222223 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 CAPN12 ENSG00000182472 19 39220832 39235114 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 LGALS7 ENSG00000205076 19 39261608 39264157 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 LGALS7B ENSG00000178934 19 39279842 39282391 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 LGALS4 ENSG00000171747 19 39292312 39303740 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 ECH1 ENSG00000104823 19 39306068 39322497 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 HNRNPL ENSG00000104824 19 39327029 39342979 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 RINL ENSG00000187994 19 39358470 39368894 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 SIRT2 ENSG00000068903 19 39369221 39390463 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 NFKBIB ENSG00000104825 19 39390615 39399531 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 FBXO17 ENSG00000104835 19 39405911 39466380 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 MRPS12 ENSG00000128626 19 39421348 39423657 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 FBXO27 ENSG00000161243 19 39514693 39523236 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 PAK4 ENSG00000130669 19 39616420 39670046 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 NCCRP1 ENSG00000188505 19 39687601 39692522 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 SYCN ENSG00000179751 19 39693562 39694906 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 IL28B ENSG00000197110 19 39734193 39735769 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 IL28A ENSG00000183709 19 39759157 39760732 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 IL29 ENSG00000182393 19 39786965 39789312 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 LRFN1 ENSG00000128011 19 39797208 39805976 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 GMFG ENSG00000130755 19 39819010 39826726 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 SHKBP1 ENSG00000160410 19 41082757 41097301 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 LTBP4 ENSG00000090006 19 41099072 41135725 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 NUMBL ENSG00000105245 19 41171810 41196556 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 ADCK4 ENSG00000123815 19 41197434 41222790 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 ITPKC ENSG00000086544 19 41223008 41246763 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 C19orf54 ENSG00000188493 19 41246761 41256342 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 SNRPA ENSG00000077312 19 41256779 41271290 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 MIA ENSG00000213054 19 41281300 41283392 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 RAB4B ENSG00000167578 19 41284171 41302847 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 EGLN2 ENSG00000171570 19 41305048 41314336 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 CYP2A7 ENSG00000198077 19 41349444 41388657 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 CYP2B6 ENSG00000197408 19 41497204 41524301 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 CYP2A7P1 ENSG00000213908 19 41530172 41533627 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 CYP2A13 ENSG00000197838 19 41594368 41602099 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 CYP2F1 ENSG00000197446 19 41620353 41634281 q13.2 ov11,ov40,ov55,ov58,ov61,ov81 6 CEACAM21 ENSG00000007129 19 42041929 42093196 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 CEACAM4 ENSG00000105352 19 42125344 42133442 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 CEACAM7 ENSG00000007306 19 42177233 42192199 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 CEACAM5 ENSG00000105388 19 42212530 42327267 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 CEACAM6 ENSG00000086548 19 42259398 42276113 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 CEACAM3 ENSG00000170956 19 42300534 42315591 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 LYPD4 ENSG00000183103 19 42341148 42348736 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 DMRTC2 ENSG00000142025 19 42349086 42356398 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 RPS19 ENSG00000105372 19 42363988 42375482 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 CD79A ENSG00000105369 19 42381190 42385439 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 ARHGEF1 ENSG00000076928 19 42387266 42411597 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 RABAC1 ENSG00000105404 19 42460838 42463528 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 ATP1A3 ENSG00000105409 19 42470734 42498384 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 GRIK5 ENSG00000105737 19 42502477 42569957 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 ZNF574 ENSG00000105732 19 42572864 42585717 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 POU2F2 ENSG00000028277 19 42592675 42636630 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 DEDD2 ENSG00000160570 19 42702752 42721813 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 ZNF526 ENSG00000167625 19 42724492 42732353 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 GSK3A ENSG00000105723 19 42734346 42746777 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 ERF ENSG00000105722 19 42751717 42759309 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 CIC ENSG00000079432 19 42788817 42799949 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 PAFAH1B3 ENSG00000079462 19 42801185 42806723 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 PRR19 ENSG00000188368 19 42806284 42814973 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 TMEM145 ENSG00000167619 19 42817477 42829214 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 MEGF8 ENSG00000105429 19 42829761 42882921 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 CNFN ENSG00000105427 19 42891173 42894444 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 LIPE ENSG00000079435 19 42905659 42931578 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 CXCL17 ENSG00000189377 19 42932440 42947200 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 CEACAM1 ENSG00000079385 19 43009500 43032639 q13.2 ov11,ov2,ov40,ov58,ov61,ov81 6 PSG3 ENSG00000221826 19 43225795 43244668 q13.2 ov11,ov2,ov40,ov45,ov61,ov81 6 PSG8 ENSG00000124467 19 43256839 43269831 q13.2 ov11,ov2,ov40,ov45,ov61,ov81 6 PSG1 ENSG00000231924 19 43348411 43709790 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 PSG6 ENSG00000170848 19 43406235 43422043 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 PSG7 ENSG00000221878 19 43428292 43441330 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 PSG5 ENSG00000204941 19 43670408 43690688 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 PSG9 ENSG00000183668 19 43715943 43773685 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 CD177 ENSG00000204936 19 43857825 43864425 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 CD177P ENSG00000213897 19 43876894 43877757 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 TEX101 ENSG00000131126 19 43910657 43922763 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 LYPD3 ENSG00000124466 19 43964946 43969831 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 PHLDB3 ENSG00000176531 19 43979266 44009087 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 ETHE1 ENSG00000105755 19 44010872 44031396 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 ZNF575 ENSG00000176472 19 44030644 44040282 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 XRCC1 ENSG00000073050 19 44047464 44079730 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 IRGQ ENSG00000167378 19 44088521 44100287 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 ZNF576 ENSG00000124444 19 44100544 44105309 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 ZNF428 ENSG00000131116 19 44111377 44124006 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 CADM4 ENSG00000105767 19 44126522 44143991 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 PLAUR ENSG00000011422 19 44150271 44174502 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 IRGC ENSG00000124449 19 44220214 44224164 q13.31 ov11,ov2,ov40,ov45,ov61,ov81 6 ZNF227 ENSG00000131115 19 44716691 44741420 q13.31 ov11,ov2,ov40,ov58,ov61,ov81 6 ZNF233 ENSG00000159915 19 44754318 44779468 q13.31 ov11,ov2,ov40,ov58,ov61,ov81 6 ZNF235 ENSG00000159917 19 44790501 44813601 q13.31 ov11,ov2,ov40,ov58,ov61,ov81 6 ZFP112 ENSG00000062370 19 44830706 44860856 q13.31 ov11,ov2,ov40,ov58,ov61,ov81 6 ZNF285A ENSG00000184280 19 44886479 44905755 q13.31 ov11,ov2,ov40,ov58,ov61,ov81 6 ZNF229 ENSG00000167383 19 44930426 44952665 q13.31 ov11,ov2,ov40,ov58,ov61,ov81 6 STRN4 ENSG00000090372 19 47222770 47249720 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 FKRP ENSG00000181027 19 47249303 47261832 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 SLC1A5 ENSG00000105281 19 47278140 47291851 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 AP2S1 ENSG00000042753 19 47341423 47354203 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 GRLF1 ENSG00000160007 19 47421933 47508323 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 NPAS1 ENSG00000130751 19 47523101 47549033 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 TMEM160 ENSG00000130748 19 47549168 47551899 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 ZC3H4 ENSG00000130749 19 47567449 47617009 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 SAE1 ENSG00000142230 19 47634116 47713532 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 BBC3 ENSG00000105327 19 47724079 47736023 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 CCDC9 ENSG00000105321 19 47759731 47775208 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 C5AR1 ENSG00000197405 19 47813104 47825327 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 GPR77 ENSG00000134830 19 47844040 47845272 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 DHX34 ENSG00000134815 19 47852546 47885961 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 MEIS3 ENSG00000105419 19 47906392 47922785 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 SLC8A2 ENSG00000118160 19 47931279 47975307 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 KPTN ENSG00000118162 19 47978400 47987521 q13.32 ov11,ov2,ov40,ov58,ov61,ov66 6 NAPA ENSG00000105402 19 47990891 48018497 q13.33 ov11,ov2,ov40,ov58,ov61,ov66 6 GLTSCR1 ENSG00000063169 19 48111453 48206534 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 EHD2 ENSG00000024422 19 48216601 48246390 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 GLTSCR2 ENSG00000105373 19 48248808 48260314 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 SEPW1 ENSG00000178980 19 48281974 48287936 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 TPRX1 ENSG00000178928 19 48304500 48306861 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 CRX ENSG00000105392 19 48325099 48346584 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 SULT2A1 ENSG00000105398 19 48373723 48389654 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 BSPH1 ENSG00000188334 19 48471303 48495427 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 ELSPBP1 ENSG00000169393 19 48497908 48528403 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 CABP5 ENSG00000105507 19 48533211 48547304 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 CABP3 ENSG00000226293 19 48543991 48547370 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 PLA2G4C ENSG00000105499 19 48551104 48614053 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 LIG1 ENSG00000105486 19 48618703 48673560 q13.33 ov11,ov2,ov40,ov55,ov58,ov61 6 RUVBL2 ENSG00000183207 19 49497156 49519182 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 LHB ENSG00000104826 19 49519237 49520347 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 CGB ENSG00000104827 19 49526128 49527632 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 CGB2 ENSG00000104818 19 49535130 49536495 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 CGB1 ENSG00000204748 19 49538826 49540191 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 NTF6B ENSG00000212844 19 49541736 49542509 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 CGB5 ENSG00000189052 19 49547063 49548566 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 CGB8 ENSG00000213030 19 49550897 49552400 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 CGB7 ENSG00000196337 19 49557548 49559036 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 NTF4 ENSG00000167744 19 49564397 49567124 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 KCNA7 ENSG00000104848 19 49570675 49576198 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 SNRNP70 ENSG00000104852 19 49588465 49611869 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 LIN7B ENSG00000104863 19 49617618 49621717 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 C19orf73 ENSG00000221916 19 49621655 49622397 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 PPFIA3 ENSG00000177380 19 49622663 49654278 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 HRC ENSG00000130528 19 49654458 49658681 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 TRPM4 ENSG00000130529 19 49661052 49715091 q13.33 ov11,ov2,ov40,ov58,ov61,ov65 6 SIGLEC11 ENSG00000161640 19 50412758 50464429 q13.33 ov11,ov2,ov40,ov5074,ov58,ov61 6 GHRH ENSG00000118702 20 35879489 35890238 q11.23 ov11,ov33,ov54,ov58,ov78,ov80 6 MANBAL ENSG00000101363 20 35918051 35945663 q11.23 ov11,ov33,ov54,ov58,ov78,ov80 6 SRC ENSG00000197122 20 35973088 36034453 q11.23 ov11,ov33,ov54,ov58,ov78,ov80 6 BLCAP ENSG00000166619 20 36145819 36156303 q11.23 ov11,ov33,ov54,ov58,ov78,ov80 6 NNAT ENSG00000053438 20 36149607 36152088 q11.23 ov11,ov33,ov54,ov58,ov78,ov80 6 CTNNBL1 ENSG00000132792 20 36322434 36500531 q11.23 ov11,ov33,ov54,ov58,ov78,ov80 6 SLC32A1 ENSG00000101438 20 37353105 37358015 q11.23 ov100,ov11,ov33,ov54,ov78,ov80 6 FAM83D ENSG00000101447 20 37554955 37581699 q11.23 ov100,ov11,ov33,ov40,ov54,ov78 6 DHX35 ENSG00000101452 20 37590995 37668363 q11.23 ov100,ov11,ov33,ov40,ov54,ov78 6 PLCG1 ENSG00000124181 20 39765600 39804361 q12 ov100,ov11,ov33,ov5074,ov54,ov78 6 CSE1L ENSG00000124207 20 47662838 47713484 q13.13 ov11,ov33,ov5074,ov78,ov80,ov94 6 GCNT7 ENSG00000124091 20 55066548 55100981 q13.31 ov33,ov40,ov5074,ov54,ov66,ov78 6 C20orf106 ENSG00000124103 20 55099769 55101208 q13.31 ov33,ov40,ov5074,ov54,ov66,ov78 6 C20orf107 ENSG00000213714 20 55108302 55111576 q13.31 ov33,ov40,ov5074,ov54,ov66,ov78 6 C20orf85 ENSG00000124237 20 56725983 56736181 q13.32 ov11,ov33,ov40,ov5074,ov54,ov78 6 ANKRD60 ENSG00000124227 20 56793551 56803709 q13.32 ov11,ov33,ov40,ov5074,ov54,ov78 6 PPP4R1L ENSG00000124224 20 56820802 56884495 q13.32 ov11,ov33,ov40,ov5074,ov54,ov78 6 RAB22A ENSG00000124209 20 56884771 56942560 q13.32 ov11,ov33,ov40,ov5074,ov54,ov78 6 VAPB ENSG00000124164 20 56964245 57021959 q13.32 ov11,ov33,ov40,ov5074,ov54,ov78 6 APCDD1L ENSG00000198768 20 57034426 57090187 q13.32 ov11,ov33,ov40,ov5074,ov54,ov78 6 STX16 ENSG00000124222 20 57226328 57267262 q13.32 ov100,ov33,ov40,ov5074,ov54,ov78 6 NPEPL1 ENSG00000215440 20 57267862 57290899 q13.32 ov100,ov33,ov40,ov5074,ov54,ov78 6 GNAS ENSG00000087460 20 57428036 57486249 q13.32 ov100,ov33,ov40,ov5074,ov54,ov78 6 TH1L ENSG00000101158 20 57556311 57570186 q13.32 ov100,ov33,ov40,ov5074,ov54,ov78 6 CTSZ ENSG00000101160 20 57570243 57582309 q13.32 ov100,ov33,ov40,ov5074,ov54,ov78 6 TUBB1 ENSG00000101162 20 57594309 57601709 q13.32 ov100,ov33,ov40,ov5074,ov54,ov78 6 ATP5E ENSG00000124172 20 57601028 57607422 q13.32 ov100,ov33,ov40,ov5074,ov54,ov78 6 SLMO2 ENSG00000101166 20 57608201 57617901 q13.32 ov100,ov33,ov40,ov5074,ov54,ov78 6 C20orf66 ENSG00000227662 20 57707998 57729904 q13.32 ov100,ov33,ov40,ov5074,ov54,ov78 6 ZNF831 ENSG00000124203 20 57766075 57834168 q13.32 ov100,ov33,ov40,ov5074,ov54,ov78 6 EDN3 ENSG00000124205 20 57875482 57901046 q13.32 ov100,ov33,ov40,ov5074,ov54,ov78 6 CDH26 ENSG00000124215 20 58533482 58609066 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 C20orf197 ENSG00000176659 20 58630980 58648008 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 CDH4 ENSG00000179242 20 59827559 60512277 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 TAF4 ENSG00000130699 20 60549852 60640866 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 LSM14B ENSG00000149657 20 60697517 60710434 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 PSMA7 ENSG00000101182 20 60711791 60718474 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 SS18L1 ENSG00000184402 20 60718822 60757563 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 GTPBP5 ENSG00000101181 20 60758081 60777808 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 HRH3 ENSG00000101180 20 60790017 60795323 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 OSBPL2 ENSG00000130703 20 60813580 60871269 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 ADRM1 ENSG00000130706 20 60878027 60883916 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 LAMA5 ENSG00000130702 20 60884121 60942368 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 RPS21 ENSG00000171858 20 60962105 60963576 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 CABLES2 ENSG00000149679 20 60963686 60982339 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 C20orf151 ENSG00000130701 20 60985293 61002589 q13.33 ov33,ov39,ov40,ov5074,ov54,ov80 6 C20orf166 ENSG00000174407 20 61147660 61167971 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 SLCO4A1 ENSG00000101187 20 61273797 61303647 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 C20orf90 ENSG00000237687 20 61326375 61331832 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 NTSR1 ENSG00000101188 20 61340189 61394122 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 C20orf20 ENSG00000101189 20 61427805 61431931 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 OGFR ENSG00000060491 20 61436177 61445352 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 COL9A3 ENSG00000092758 20 61448414 61472511 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 TCFL5 ENSG00000101190 20 61472468 61493115 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 DIDO1 ENSG00000101191 20 61509090 61569274 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 C20orf11 ENSG00000101193 20 61569441 61579823 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 SLC17A9 ENSG00000101194 20 61583999 61599941 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 BHLHE23 ENSG00000125533 20 61637331 61638387 q13.33 ov33,ov39,ov40,ov5074,ov54,ov78 6 ACTRT2 ENSG00000169717 1 2938046 2939465 p36.32 ov102,ov29,ov33,ov66,ov77 5 PRDM16 ENSG00000142611 1 2985744 3355185 p36.32 ov102,ov29,ov33,ov66,ov77 5 TSPYL5 ENSG00000180543 8 98285717 98290176 q22.1 ov11,ov20,ov78,ov88,ov94 5 MTDH ENSG00000147649 8 98656407 98742488 q22.1 ov11,ov20,ov78,ov88,ov94 5 LAPTM4B ENSG00000104341 8 98787809 98864826 q22.1 ov11,ov20,ov78,ov88,ov94 5 MATN2 ENSG00000132561 8 98881311 99048944 q22.1 ov11,ov20,ov78,ov88,ov94 5 RPL30 ENSG00000156482 8 99053954 99059858 q22.2 ov11,ov20,ov78,ov88,ov94 5 C8orf47 ENSG00000177459 8 99076750 99105838 q22.2 ov11,ov20,ov78,ov88,ov94 5 HRSP12 ENSG00000132541 8 99114567 99129418 q22.2 ov11,ov20,ov78,ov88,ov94 5 POP1 ENSG00000104356 8 99129540 99170642 q22.2 ov11,ov20,ov78,ov88,ov94 5 NIPAL2 ENSG00000104361 8 99204387 99306621 q22.2 ov11,ov20,ov78,ov88,ov94 5 KCNS2 ENSG00000156486 8 99439250 99443019 q22.2 ov11,ov20,ov78,ov88,ov94 5 STK3 ENSG00000104375 8 99466861 99895984 q22.2 ov11,ov20,ov78,ov88,ov94 5 RPS26P6 ENSG00000212994 8 101907999 101908412 q22.3 ov20,ov78,ov80,ov88,ov94 5 YWHAZ ENSG00000164924 8 101930804 101965623 q22.3 ov20,ov78,ov80,ov88,ov94 5 ZNF706 ENSG00000120963 8 102209268 102217960 q22.3 ov20,ov78,ov80,ov88,ov94 5 NACAP1 ENSG00000228224 8 102374022 102384935 q22.3 ov20,ov78,ov80,ov88,ov94 5 GRHL2 ENSG00000083307 8 102504668 102681954 q22.3 ov20,ov78,ov80,ov88,ov94 5 RRM2B ENSG00000048392 8 103216732 103251346 q22.3 ov20,ov78,ov88,ov93,ov94 5 UBR5 ENSG00000104517 8 103265572 103424495 q22.3 ov20,ov78,ov88,ov93,ov94 5 ODF1 ENSG00000155087 8 103563848 103573245 q22.3 ov20,ov78,ov88,ov93,ov94 5 KLF10 ENSG00000155090 8 103661007 103667983 q22.3 ov20,ov78,ov88,ov93,ov94 5 ZNF572 ENSG00000180938 8 125985539 125991631 q24.13 ov11,ov20,ov78,ov88,ov94 5 SQLE ENSG00000104549 8 126010720 126034525 q24.13 ov11,ov20,ov78,ov88,ov94 5 MYC ENSG00000136997 8 128748316 128753671 q24.21 ov20,ov59,ov78,ov88,ov94 5 TMEM75 ENSG00000184090 8 128959864 128960280 q24.21 ov20,ov59,ov78,ov88,ov94 5 ASAP1 ENSG00000153317 8 131064353 131414217 q24.21 ov20,ov51,ov58,ov78,ov88 5 KCNQ3 ENSG00000184156 8 133139193 133493200 q24.22 ov11,ov20,ov51,ov78,ov88 5 KCNK9 ENSG00000169427 8 140624804 140715299 q24.3 ov11,ov20,ov78,ov88,ov94 5 TRAPPC9 ENSG00000167632 8 140742588 141468678 q24.3 ov11,ov20,ov78,ov88,ov94 5 CHRAC1 ENSG00000104472 8 141521401 141527252 q24.3 ov11,ov20,ov78,ov88,ov94 5 EIF2C2 ENSG00000123908 8 141541265 141645645 q24.3 ov11,ov20,ov78,ov88,ov94 5 FBXO47 ENSG00000204952 17 37092685 37123655 q12 ov108,ov33,ov48,ov58,ov61 5 PLXDC1 ENSG00000161381 17 37219557 37308933 q12 ov108,ov33,ov48,ov58,ov61 5 CACNB1 ENSG00000067191 17 37329709 37353901 q12 ov108,ov33,ov48,ov58,ov61 5 RPL19 ENSG00000108298 17 37356536 37360980 q12 ov108,ov33,ov48,ov58,ov61 5 STAC2 ENSG00000141750 17 37366790 37381974 q12 ov108,ov33,ov48,ov58,ov61 5 FBXL20 ENSG00000108306 17 37416848 37557898 q12 ov108,ov33,ov48,ov58,ov61 5 MED1 ENSG00000125686 17 37560549 37607527 q12 ov108,ov33,ov48,ov58,ov61 5 CRKRS ENSG00000167258 17 37617739 37690799 q12 ov108,ov33,ov48,ov58,ov61 5 KRTAP17-1 ENSG00000186860 17 39471173 39471947 q21.2 ov102,ov108,ov58,ov61,ov80 5 Supplementary Table 2 Page 4
KRT33A ENSG00000006059 17 39502344 39507064 q21.2 ov102,ov108,ov58,ov61,ov80 5 KRT33B ENSG00000131738 17 39519751 39526052 q21.2 ov102,ov108,ov58,ov61,ov80 5 KRT34 ENSG00000131737 17 39533902 39538655 q21.2 ov102,ov108,ov58,ov61,ov80 5 KRT31 ENSG00000094796 17 39549979 39553844 q21.2 ov102,ov108,ov58,ov61,ov80 5 KRT37 ENSG00000108417 17 39576809 39580822 q21.2 ov102,ov108,ov58,ov61,ov80 5 KRT38 ENSG00000171360 17 39592621 39597596 q21.2 ov102,ov108,ov58,ov61,ov80 5 KRT32 ENSG00000108759 17 39615765 39623638 q21.2 ov102,ov108,ov58,ov61,ov80 5 KRT35 ENSG00000197079 17 39632941 39637392 q21.2 ov102,ov108,ov58,ov61,ov80 5 KRT36 ENSG00000126337 17 39642390 39648798 q21.2 ov102,ov108,ov58,ov61,ov80 5 KRT13 ENSG00000171401 17 39657236 39661865 q21.2 ov102,ov108,ov58,ov61,ov80 5 WNT3 ENSG00000108379 17 44839876 44895981 q21.31 ov102,ov108,ov14,ov33,ov61 5 WNT9B ENSG00000158955 17 44910712 44962485 q21.32 ov102,ov108,ov14,ov33,ov61 5 GOSR2 ENSG00000108433 17 45000486 45022263 q21.32 ov102,ov108,ov14,ov33,ov61 5 RPRML ENSG00000179673 17 45055523 45056614 q21.32 ov102,ov108,ov14,ov33,ov61 5 LRRC37A4 ENSG00000187451 17 45125431 45128362 q21.32 ov102,ov108,ov14,ov33,ov61 5 NPEPPS ENSG00000141279 17 45608444 45700641 q21.32 ov14,ov31,ov58,ov61,ov80 5 MYCBPAP ENSG00000136449 17 48585745 48608861 q21.33 ov44,ov56,ov58,ov61,ov80 5 EPN3 ENSG00000049283 17 48610048 48621110 q21.33 ov44,ov56,ov58,ov61,ov80 5 SPATA20 ENSG00000006282 17 48624555 48633211 q21.33 ov44,ov56,ov58,ov61,ov80 5 CACNA1G ENSG00000006283 17 48638449 48704542 q21.33 ov44,ov56,ov58,ov61,ov80 5 ABCC3 ENSG00000108846 17 48712218 48769062 q21.33 ov44,ov56,ov58,ov61,ov80 5 ANKRD40 ENSG00000154945 17 48770551 48785270 q21.33 ov44,ov56,ov58,ov61,ov80 5 TANC2 ENSG00000170921 17 61086898 61505067 q23.2 ov108,ov44,ov58,ov61,ov99 5 CYB561 ENSG00000008283 17 61509668 61523722 q23.3 ov108,ov44,ov58,ov61,ov99 5 ACE ENSG00000159640 17 61554434 61574979 q23.3 ov108,ov44,ov58,ov61,ov99 5 WDR68 ENSG00000136485 17 61627822 61671639 q23.3 ov108,ov44,ov58,ov61,ov99 5 CCDC44 ENSG00000136463 17 61678243 61685724 q23.3 ov108,ov44,ov58,ov61,ov99 5 SDK2 ENSG00000069188 17 71330523 71640227 q25.1 ov108,ov58,ov61,ov77,ov94 5 OTOP3 ENSG00000182938 17 72931897 72945541 q25.1 ov108,ov58,ov61,ov65,ov77 5 C17orf28 ENSG00000167861 17 72946840 72968900 q25.1 ov108,ov58,ov61,ov65,ov77 5 CDR2L ENSG00000109089 17 72983727 73001890 q25.1 ov108,ov58,ov61,ov65,ov77 5 ICT1 ENSG00000167862 17 73008776 73017355 q25.1 ov108,ov58,ov61,ov65,ov77 5 ATP5H ENSG00000167863 17 73034955 73043074 q25.1 ov108,ov58,ov61,ov65,ov77 5 KCTD2 ENSG00000180901 17 73043279 73061979 q25.1 ov108,ov58,ov61,ov65,ov77 5 SLC16A5 ENSG00000170190 17 73084055 73102246 q25.1 ov108,ov58,ov61,ov65,ov77 5 SLC25A19 ENSG00000125454 17 73269062 73285530 q25.1 ov108,ov58,ov61,ov65,ov80 5 GRB2 ENSG00000177885 17 73314157 73401790 q25.1 ov108,ov58,ov61,ov65,ov80 5 KIAA0195 ENSG00000177728 17 73452664 73496530 q25.1 ov108,ov58,ov61,ov65,ov80 5 UNC13D ENSG00000092929 17 73823310 73840798 q25.1 ov108,ov58,ov60,ov61,ov65 5 WBP2 ENSG00000132471 17 73841780 73851501 q25.1 ov108,ov58,ov60,ov61,ov65 5 TRIM47 ENSG00000132481 17 73870247 73874656 q25.1 ov108,ov58,ov60,ov61,ov65 5 TRIM65 ENSG00000141569 17 73885045 73893054 q25.1 ov108,ov58,ov60,ov61,ov65 5 MRPL38 ENSG00000204316 17 73894724 73901474 q25.1 ov108,ov58,ov60,ov61,ov65 5 FBF1 ENSG00000188878 17 73905987 73937119 q25.1 ov108,ov58,ov60,ov61,ov65 5 ACOX1 ENSG00000161533 17 73937596 73975444 q25.1 ov108,ov58,ov60,ov61,ov65 5 PRPSAP1 ENSG00000161542 17 74306868 74380602 q25.1 ov108,ov58,ov61,ov65,ov80 5 SPHK1 ENSG00000176170 17 74380690 74383941 q25.1 ov108,ov58,ov61,ov65,ov80 5 UBE2O ENSG00000175931 17 74385614 74449288 q25.1 ov108,ov58,ov61,ov65,ov80 5 AANAT ENSG00000129673 17 74449433 74466198 q25.1 ov108,ov58,ov61,ov65,ov80 5 RHBDF2 ENSG00000129667 17 74466976 74497508 q25.1 ov108,ov58,ov61,ov65,ov80 5 CYGB ENSG00000161544 17 74523461 74533966 q25.1 ov108,ov58,ov61,ov65,ov80 5 PRCD ENSG00000214140 17 74534577 74541458 q25.1 ov108,ov58,ov61,ov65,ov80 5 SNORD1C ENSG00000163597 17 74553860 74561430 q25.1 ov108,ov58,ov61,ov65,ov80 5 ST6GALNAC2 ENSG00000070731 17 74561461 74582145 q25.1 ov108,ov58,ov61,ov65,ov80 5 ST6GALNAC1 ENSG00000070526 17 74620847 74639894 q25.1 ov108,ov58,ov61,ov65,ov80 5 MXRA7 ENSG00000182534 17 74671809 74707087 q25.1 ov108,ov58,ov61,ov65,ov80 5 JMJD6 ENSG00000070495 17 74708914 74722881 q25.1 ov108,ov58,ov61,ov65,ov80 5 C17orf95 ENSG00000181038 17 74722940 74729961 q25.1 ov108,ov58,ov61,ov65,ov80 5 SFRS2 ENSG00000161547 17 74730201 74733413 q25.1 ov108,ov58,ov61,ov65,ov80 5 MFSD11 ENSG00000092931 17 74733783 74775336 q25.1 ov108,ov58,ov61,ov65,ov80 5 MGAT5B ENSG00000167889 17 74864538 74946465 q25.2 ov108,ov58,ov61,ov65,ov80 5 SEC14L1 ENSG00000129657 17 75137005 75213183 q25.2 ov108,ov58,ov61,ov65,ov80 5 TMC6 ENSG00000141524 17 76108999 76128488 q25.3 ov56,ov61,ov65,ov66,ov80 5 TMC8 ENSG00000167895 17 76126859 76139049 q25.3 ov56,ov61,ov65,ov66,ov80 5 C17orf99 ENSG00000187997 17 76142434 76162236 q25.3 ov56,ov61,ov65,ov66,ov80 5 SYNGR2 ENSG00000108639 17 76164671 76169009 q25.3 ov56,ov61,ov65,ov66,ov80 5 TK1 ENSG00000167900 17 76170161 76183285 q25.3 ov56,ov61,ov65,ov66,ov80 5 AFMID ENSG00000183077 17 76183437 76203782 q25.3 ov56,ov61,ov65,ov66,ov80 5 BIRC5 ENSG00000089685 17 76210277 76221715 q25.3 ov56,ov61,ov65,ov66,ov80 5 SOCS3 ENSG00000184557 17 76352864 76356158 q25.3 ov56,ov61,ov65,ov66,ov80 5 PGS1 ENSG00000087157 17 76374735 76420635 q25.3 ov56,ov61,ov65,ov66,ov80 5 DNAH17 ENSG00000187775 17 76419778 76573476 q25.3 ov56,ov61,ov65,ov66,ov80 5 CYTH1 ENSG00000108669 17 76670130 76778379 q25.3 ov56,ov61,ov65,ov66,ov80 5 TIMP2 ENSG00000035862 17 76849063 76921472 q25.3 ov33,ov56,ov61,ov65,ov80 5 LGALS3BP ENSG00000108679 17 76967337 76976061 q25.3 ov33,ov56,ov61,ov65,ov80 5 SGSH ENSG00000181523 17 78183079 78194199 q25.3 ov33,ov58,ov61,ov65,ov80 5 SLC26A11 ENSG00000181045 17 78194229 78227297 q25.3 ov33,ov58,ov61,ov65,ov80 5 KIAA1618 ENSG00000180843 17 78234667 78310304 q25.3 ov33,ov58,ov61,ov65,ov80 5 CHMP6 ENSG00000176108 17 78965641 78973932 q25.3 ov1,ov33,ov56,ov58,ov61 5 BAIAP2 ENSG00000175866 17 79008947 79091232 q25.3 ov1,ov33,ov56,ov58,ov61 5 RYR1 ENSG00000196218 19 38924340 39078204 q13.2 ov11,ov40,ov55,ov61,ov81 5 CYP2S1 ENSG00000167600 19 41699115 41713443 q13.2 ov11,ov40,ov58,ov61,ov81 5 AXL ENSG00000167601 19 41725108 41767670 q13.2 ov11,ov40,ov58,ov61,ov81 5 HNRNPUL1 ENSG00000105323 19 41768391 41813811 q13.2 ov11,ov40,ov58,ov61,ov81 5 CCDC97 ENSG00000142039 19 41816094 41830785 q13.2 ov11,ov40,ov58,ov61,ov81 5 TGFB1 ENSG00000105329 19 41836651 41859816 q13.2 ov11,ov40,ov58,ov61,ov81 5 B9D2 ENSG00000123810 19 41860327 41870037 q13.2 ov11,ov40,ov58,ov61,ov81 5 TMEM91 ENSG00000142046 19 41882129 41937250 q13.2 ov11,ov40,ov58,ov61,ov81 5 EXOSC5 ENSG00000077348 19 41892281 41903256 q13.2 ov11,ov40,ov58,ov61,ov81 5 B3GNT8 ENSG00000177191 19 41931265 41934635 q13.2 ov11,ov40,ov58,ov61,ov81 5 ATP5SL ENSG00000105341 19 41937224 41949940 q13.2 ov11,ov40,ov58,ov61,ov81 5 C19orf69 ENSG00000204978 19 41949063 41950670 q13.2 ov11,ov40,ov58,ov61,ov81 5 ZNF541 ENSG00000118156 19 48023947 48059113 q13.33 ov11,ov2,ov40,ov58,ov61 5 SLC6A16 ENSG00000063127 19 49792897 49828474 q13.33 ov11,ov2,ov40,ov58,ov61 5 CD37 ENSG00000104894 19 49838677 49843859 q13.33 ov11,ov2,ov40,ov58,ov61 5 TEAD2 ENSG00000074219 19 49843857 49865714 q13.33 ov11,ov2,ov40,ov58,ov61 5 DKKL1 ENSG00000104901 19 49867042 49878371 q13.33 ov11,ov2,ov40,ov58,ov61 5 CCDC155 ENSG00000161609 19 49891506 49921246 q13.33 ov11,ov2,ov40,ov58,ov61 5 PTH2 ENSG00000142538 19 49925671 49926698 q13.33 ov11,ov2,ov40,ov58,ov61 5 SLC17A7 ENSG00000104888 19 49932656 49944808 q13.33 ov11,ov2,ov40,ov58,ov61 5 PIH1D1 ENSG00000104872 19 49949556 49955067 q13.33 ov11,ov2,ov40,ov58,ov61 5 ALDH16A1 ENSG00000161618 19 49956473 49974304 q13.33 ov11,ov2,ov40,ov58,ov61 5 FLT3LG ENSG00000090554 19 49977486 49989487 q13.33 ov11,ov2,ov40,ov58,ov61 5 RPL13A ENSG00000142541 19 49990865 49995558 q13.33 ov11,ov2,ov40,ov58,ov61 5 RPS11 ENSG00000142534 19 49999634 50002944 q13.33 ov11,ov2,ov40,ov58,ov61 5 FCGRT ENSG00000104870 19 50015620 50029588 q13.33 ov11,ov2,ov40,ov58,ov61 5 RCN3 ENSG00000142552 19 50030875 50046889 q13.33 ov11,ov2,ov40,ov58,ov61 5 NOSIP ENSG00000142546 19 50058970 50083813 q13.33 ov11,ov2,ov40,ov58,ov61 5 PRRG2 ENSG00000126460 19 50084587 50094265 q13.33 ov11,ov2,ov40,ov58,ov61 5 PRR12 ENSG00000126464 19 50094912 50129695 q13.33 ov11,ov2,ov40,ov58,ov61 5 RRAS ENSG00000126458 19 50138552 50143400 q13.33 ov11,ov2,ov40,ov58,ov61 5 SCAF1 ENSG00000126461 19 50145382 50161898 q13.33 ov11,ov2,ov40,ov58,ov61 5 IRF3 ENSG00000126456 19 50162829 50169132 q13.33 ov11,ov2,ov40,ov58,ov61 5 BCL2L12 ENSG00000126453 19 50168399 50177172 q13.33 ov11,ov2,ov40,ov58,ov61 5 PRMT1 ENSG00000126457 19 50180496 50191704 q13.33 ov11,ov2,ov40,ov58,ov61 5 CPT1C ENSG00000169169 19 50194401 50216988 q13.33 ov11,ov2,ov40,ov58,ov61 5 TSKS ENSG00000126467 19 50243018 50266543 q13.33 ov11,ov2,ov40,ov58,ov61 5 AP2A1 ENSG00000196961 19 50270180 50310369 q13.33 ov11,ov2,ov40,ov58,ov61 5 FUZ ENSG00000010361 19 50310175 50316527 q13.33 ov11,ov2,ov40,ov58,ov61 5 MED25 ENSG00000104973 19 50321546 50342036 q13.33 ov11,ov2,ov40,ov58,ov61 5 PTOV1 ENSG00000104960 19 50354138 50363990 q13.33 ov11,ov2,ov40,ov58,ov61 5 PNKP ENSG00000039650 19 50364462 50370818 q13.33 ov11,ov2,ov40,ov58,ov61 5 AKT1S1 ENSG00000204673 19 50372295 50381716 q13.33 ov11,ov2,ov40,ov58,ov61 5 TBC1D17 ENSG00000104946 19 50380829 50392000 q13.33 ov11,ov2,ov40,ov58,ov61 5 IL4I1 ENSG00000104951 19 50392916 50432796 q13.33 ov11,ov2,ov40,ov58,ov61 5 NUP62 ENSG00000213024 19 50410086 50432786 q13.33 ov11,ov2,ov40,ov58,ov61 5 ATF5 ENSG00000169136 19 50431974 50437192 q13.33 ov11,ov2,ov40,ov58,ov61 5 SIGLECP16 ENSG00000161643 19 50472857 50478191 q13.33 ov11,ov2,ov40,ov5074,ov61 5 VRK3 ENSG00000105053 19 50479726 50528805 q13.33 ov11,ov2,ov40,ov5074,ov61 5 ZNF473 ENSG00000142528 19 50529212 50552029 q13.33 ov11,ov2,ov40,ov5074,ov61 5 C19orf41 ENSG00000161652 19 50655806 50666538 q13.33 ov11,ov2,ov40,ov5074,ov61 5 MYH14 ENSG00000105357 19 50706885 50813799 q13.33 ov11,ov2,ov40,ov5074,ov61 5 KLK3 ENSG00000142515 19 51358171 51364020 q13.33 ov11,ov2,ov40,ov55,ov61 5 KLK2 ENSG00000167751 19 51376689 51383822 q13.33 ov11,ov2,ov40,ov55,ov61 5 KLKP1 ENSG00000197588 19 51385354 51391121 q13.33 ov11,ov2,ov40,ov55,ov61 5 KLK4 ENSG00000167749 19 51409608 51413994 q13.41 ov11,ov2,ov40,ov55,ov61 5 KLK5 ENSG00000167754 19 51446561 51456344 q13.41 ov11,ov2,ov40,ov55,ov61 5 KLK6 ENSG00000167755 19 51461888 51472929 q13.41 ov11,ov2,ov40,ov55,ov61 5 KLK7 ENSG00000169035 19 51479729 51487294 q13.41 ov11,ov2,ov40,ov55,ov61 5 KLK8 ENSG00000129455 19 51499264 51504958 q13.41 ov11,ov2,ov40,ov55,ov61 5 KLK9 ENSG00000213022 19 51505769 51512890 q13.41 ov11,ov2,ov40,ov55,ov61 5 KLK10 ENSG00000129451 19 51516001 51523431 q13.41 ov11,ov2,ov40,ov55,ov61 5 KLK11 ENSG00000167757 19 51525489 51531290 q13.41 ov11,ov2,ov40,ov55,ov61 5 KLK12 ENSG00000186474 19 51532348 51538148 q13.41 ov11,ov2,ov40,ov55,ov61 5 KLK13 ENSG00000167759 19 51559463 51568367 q13.41 ov11,ov2,ov40,ov55,ov61 5 KLK14 ENSG00000129437 19 51580752 51587502 q13.41 ov11,ov2,ov40,ov55,ov61 5 ATPBD3 ENSG00000142544 19 51600863 51611647 q13.41 ov11,ov2,ov40,ov55,ov61 5 SIGLEC9 ENSG00000129450 19 51628165 51633566 q13.41 ov11,ov2,ov40,ov55,ov61 5 SIGLEC7 ENSG00000168995 19 51645558 51656783 q13.41 ov11,ov2,ov40,ov55,ov61 5 SIGLECP3 ENSG00000171101 19 51670585 51675840 q13.41 ov11,ov2,ov40,ov55,ov61 5 CD33 ENSG00000105383 19 51728335 51743274 q13.41 ov11,ov2,ov40,ov55,ov61 5 IGLON5 ENSG00000142549 19 51815102 51834102 q13.41 ov11,ov2,ov40,ov55,ov61 5 ETFB ENSG00000105379 19 51848410 51869672 q13.41 ov11,ov2,ov40,ov55,ov61 5 CLDND2 ENSG00000160318 19 51870352 51872257 q13.41 ov11,ov2,ov40,ov55,ov61 5 NKG7 ENSG00000105374 19 51874874 51875960 q13.41 ov11,ov2,ov40,ov55,ov61 5 LIM2 ENSG00000105370 19 51883164 51891197 q13.41 ov11,ov2,ov40,ov55,ov61 5 FKBP1A ENSG00000088832 20 1349623 1373816 p13 ov100,ov11,ov48,ov80,ov81 5 NSFL1C ENSG00000088833 20 1422811 1448417 p13 ov100,ov11,ov48,ov80,ov81 5 SIRPB2 ENSG00000196209 20 1455236 1472233 p13 ov100,ov11,ov48,ov80,ov81 5 SIRPD ENSG00000125900 20 1497405 1539489 p13 ov100,ov11,ov48,ov80,ov81 5 SIRPB1 ENSG00000101307 20 1545029 1600689 p13 ov100,ov11,ov48,ov80,ov81 5 SIRPG ENSG00000089012 20 1609798 1638425 p13 ov100,ov11,ov48,ov80,ov81 5 SIRPA ENSG00000198053 20 1874813 1920540 p13 ov100,ov11,ov48,ov80,ov81 5 PDYN ENSG00000101327 20 1959403 1974702 p13 ov100,ov11,ov48,ov80,ov81 5 STK35 ENSG00000125834 20 2082727 2129201 p13 ov100,ov11,ov48,ov80,ov81 5 ACTR5 ENSG00000101442 20 37377097 37401089 q11.23 ov100,ov11,ov33,ov54,ov78 5 PPP1R16B ENSG00000101445 20 37434348 37551667 q11.23 ov100,ov11,ov33,ov54,ov78 5 CBLN4 ENSG00000054803 20 54572497 54580530 q13.2 ov33,ov40,ov5074,ov54,ov78 5 MC3R ENSG00000124089 20 54823788 54824871 q13.2 ov33,ov40,ov5074,ov54,ov78 5 C20orf108 ENSG00000124098 20 54933983 54943709 q13.2 ov33,ov40,ov5074,ov54,ov78 5 AURKA ENSG00000087586 20 54944445 54967351 q13.2 ov33,ov40,ov5074,ov54,ov78 5 CSTF1 ENSG00000101138 20 54967427 54979582 q13.2 ov33,ov40,ov5074,ov54,ov78 5 CASS4 ENSG00000087589 20 54987168 55034395 q13.2 ov33,ov40,ov5074,ov54,ov78 5 C20orf43 ENSG00000022277 20 55043647 55093942 q13.31 ov33,ov40,ov5074,ov54,ov78 5 GATA5 ENSG00000130700 20 61038553 61051026 q13.33 ov33,ov39,ov40,ov5074,ov54 5 C21orf70 ENSG00000160256 21 46359940 46396887 q22.3 ov2,ov39,ov66,ov88,ov94 5 ADARB1 ENSG00000197381 21 46494515 46646475 q22.3 ov2,ov39,ov66,ov88,ov94 5 POFUT2 ENSG00000186866 21 46683844 46707811 q22.3 ov2,ov39,ov66,ov88,ov94 5 C21orf86 ENSG00000223768 21 46713200 46717269 q22.3 ov2,ov39,ov66,ov88,ov94 5 COL18A1 ENSG00000182871 21 46825057 46933634 q22.3 ov2,ov39,ov66,ov88,ov94 5 NCRNA00175 ENSG00000183535 21 46839631 46844985 q22.3 ov2,ov39,ov66,ov88,ov94 5 SLC19A1 ENSG00000173638 21 46913486 46964314 q22.3 ov2,ov39,ov66,ov88,ov94 5 AJAP1 ENSG00000196581 1 4715105 4843851 p36.32 ov29,ov33,ov48,ov66 4 NPHP4 ENSG00000131697 1 5922870 6052531 p36.31 ov29,ov33,ov48,ov66 4 KCNAB2 ENSG00000069424 1 6051526 6161253 p36.31 ov29,ov33,ov48,ov66 4 CHD5 ENSG00000116254 1 6161853 6240183 p36.31 ov29,ov33,ov48,ov66 4 RPL22 ENSG00000116251 1 6245081 6259679 p36.31 ov29,ov33,ov48,ov66 4 RNF207 ENSG00000158286 1 6266189 6281351 p36.31 ov29,ov33,ov48,ov66 4 PRDM2 ENSG00000116731 1 14026735 14151569 p36.21 ov39,ov48,ov58,ov66 4 C1orf196 ENSG00000218328 1 14219052 14507186 p36.21 ov39,ov48,ov58,ov66 4 SFRP1 ENSG00000104332 8 41119483 41166992 p11.21 ov20,ov54,ov78,ov94 4 GOLGA7 ENSG00000147533 8 41348081 41368493 p11.21 ov20,ov54,ov78,ov94 4 GINS4 ENSG00000147536 8 41386725 41402565 p11.21 ov20,ov54,ov78,ov94 4 AGPAT6 ENSG00000158669 8 41435707 41482520 p11.21 ov20,ov54,ov78,ov94 4 NKX6-3 ENSG00000165066 8 41503829 41508011 p11.21 ov20,ov54,ov78,ov94 4 ANK1 ENSG00000029534 8 41510745 41754280 p11.21 ov20,ov54,ov78,ov94 4 MYST3 ENSG00000083168 8 41786997 41909508 p11.21 ov20,ov54,ov78,ov94 4 AP3M2 ENSG00000070718 8 42010464 42028701 p11.21 ov20,ov54,ov78,ov94 4 PLAT ENSG00000104368 8 42032236 42065194 p11.21 ov20,ov54,ov78,ov94 4 IKBKB ENSG00000104365 8 42128829 42189965 p11.21 ov20,ov54,ov78,ov94 4 POLB ENSG00000070501 8 42196009 42229325 p11.21 ov20,ov54,ov78,ov94 4 DKK4 ENSG00000104371 8 42231587 42234675 p11.21 ov20,ov54,ov78,ov94 4 VDAC3 ENSG00000078668 8 42249346 42263411 p11.21 ov20,ov54,ov78,ov94 4 SLC20A2 ENSG00000168575 8 42274016 42397068 p11.21 ov20,ov54,ov78,ov94 4 C8orf40 ENSG00000176209 8 42396298 42408139 p11.21 ov20,ov54,ov78,ov94 4 CHRNB3 ENSG00000147432 8 42552562 42592209 p11.21 ov20,ov54,ov78,ov94 4 CHRNA6 ENSG00000147434 8 42607782 42623619 p11.21 ov20,ov54,ov78,ov94 4 THAP1 ENSG00000131931 8 42691818 42698474 p11.21 ov20,ov54,ov78,ov94 4 RNF170 ENSG00000120925 8 42705934 42751782 p11.21 ov20,ov54,ov78,ov94 4 HOOK3 ENSG00000168172 8 42752033 42885671 p11.21 ov20,ov54,ov78,ov94 4 FNTA ENSG00000168522 8 42911442 42940923 p11.1 ov20,ov54,ov78,ov94 4 POTEA ENSG00000188877 8 43147585 43218328 p11.1 ov20,ov54,ov78,ov94 4 MSC ENSG00000178860 8 72753778 72756731 q13.3 ov20,ov77,ov88,ov94 4 TRPA1 ENSG00000104321 8 72933486 72987819 q13.3 ov20,ov77,ov88,ov94 4 PSKH2 ENSG00000147613 8 87060602 87081926 q21.3 ov20,ov78,ov88,ov94 4 ATP6V0D2 ENSG00000147614 8 87111133 87166457 q21.3 ov20,ov78,ov88,ov94 4 SLC7A13 ENSG00000164893 8 87226297 87242604 q21.3 ov20,ov78,ov88,ov94 4 WWP1 ENSG00000123124 8 87386270 87479705 q21.3 ov20,ov78,ov88,ov94 4 FAM82B ENSG00000176623 8 87484578 87521009 q21.3 ov20,ov78,ov88,ov94 4 CPNE3 ENSG00000085719 8 87497059 87573726 q21.3 ov20,ov78,ov88,ov94 4 CNGB3 ENSG00000170289 8 87586161 87755901 q21.3 ov20,ov78,ov88,ov94 4 CNBD1 ENSG00000176571 8 88218216 88394955 q21.3 ov20,ov78,ov88,ov94 4 WDR21C ENSG00000176566 8 88882973 88886296 q21.3 ov20,ov78,ov88,ov94 4 MMP16 ENSG00000156103 8 89049464 89339717 q21.3 ov20,ov78,ov88,ov94 4 RIPK2 ENSG00000104312 8 90769975 90803292 q21.3 ov20,ov78,ov88,ov94 4 OSGIN2 ENSG00000164823 8 90914096 90940096 q21.3 ov20,ov78,ov88,ov94 4 NBN ENSG00000104320 8 90945564 90996899 q21.3 ov20,ov78,ov88,ov94 4 DECR1 ENSG00000104325 8 91013580 91064227 q21.3 ov20,ov78,ov88,ov94 4 CALB1 ENSG00000104327 8 91070838 91095107 q21.3 ov20,ov78,ov88,ov94 4 TMEM64 ENSG00000180694 8 91634223 91658133 q21.3 ov20,ov78,ov88,ov94 4 TMEM55A ENSG00000155099 8 92006504 92053203 q21.3 ov20,ov78,ov88,ov94 4 OTUD6B ENSG00000155100 8 92082424 92099319 q21.3 ov20,ov78,ov88,ov94 4 LRRC69 ENSG00000214954 8 92114847 92231436 q21.3 ov20,ov78,ov88,ov94 4 SLC26A7 ENSG00000147606 8 92261516 92410378 q21.3 ov20,ov78,ov88,ov94 4 RUNX1T1 ENSG00000079102 8 92971152 93107443 q21.3 ov20,ov78,ov88,ov94 4 C8orf83 ENSG00000205133 8 93897944 93978326 q22.1 ov20,ov78,ov88,ov94 4 INTS8 ENSG00000164941 8 95835534 95892720 q22.1 ov11,ov20,ov78,ov88 4 CCNE2 ENSG00000175305 8 95892455 95907484 q22.1 ov11,ov20,ov78,ov88 4 C8orf38 ENSG00000156170 8 95908041 96087923 q22.1 ov11,ov20,ov78,ov88 4 TP53INP1 ENSG00000164938 8 95938201 95961615 q22.1 ov11,ov20,ov78,ov88 4 PLEKHF2 ENSG00000175895 8 96146032 96168911 q22.1 ov11,ov20,ov78,ov88 4 C8orf37 ENSG00000156172 8 96257148 96281429 q22.1 ov11,ov20,ov78,ov88 4 GDF6 ENSG00000156466 8 97154560 97173020 q22.1 ov11,ov20,ov78,ov88 4 UQCRB ENSG00000156467 8 97239310 97247862 q22.1 ov11,ov20,ov78,ov88 4 MTERFD1 ENSG00000156469 8 97251663 97273817 q22.1 ov11,ov20,ov78,ov88 4 PTDSS1 ENSG00000156471 8 97274164 97346774 q22.1 ov11,ov20,ov78,ov88 4 SDC2 ENSG00000169439 8 97505882 97624037 q22.1 ov11,ov20,ov78,ov88 4 VPS13B ENSG00000132549 8 100025494 100889807 q22.2 ov20,ov78,ov88,ov94 4 COX6C ENSG00000164919 8 100890372 100905895 q22.2 ov20,ov78,ov88,ov94 4 RGS22 ENSG00000132554 8 100973276 101118344 q22.2 ov20,ov78,ov88,ov94 4 FBXO43 ENSG00000156509 8 101145659 101158076 q22.2 ov20,ov78,ov88,ov94 4 POLR2K ENSG00000147669 8 101162839 101166230 q22.2 ov20,ov78,ov88,ov94 4 SPAG1 ENSG00000104450 8 101170263 101254130 q22.2 ov20,ov78,ov88,ov94 4 RNF19A ENSG00000034677 8 101269288 101322327 q22.2 ov20,ov78,ov88,ov94 4 ANKRD46 ENSG00000186106 8 101522805 101571987 q22.2 ov20,ov78,ov88,ov94 4 SNX31 ENSG00000174226 8 101585116 101661893 q22.3 ov20,ov78,ov88,ov94 4 PABPC1 ENSG00000070756 8 101715144 101734315 q22.3 ov20,ov78,ov88,ov94 4 AZIN1 ENSG00000155096 8 103838536 103876397 q22.3 ov20,ov78,ov88,ov94 4 Supplementary Table 2 Page 5
ATP6V1C1 ENSG00000155097 8 104033248 104085285 q22.3 ov20,ov78,ov88,ov94 4 C8orf56 ENSG00000236939 8 104145191 104153570 q22.3 ov20,ov78,ov88,ov94 4 BAALC ENSG00000164929 8 104152921 104242530 q22.3 ov20,ov78,ov88,ov94 4 FZD6 ENSG00000164930 8 104311100 104345087 q22.3 ov20,ov78,ov88,ov94 4 CTHRC1 ENSG00000164932 8 104383743 104395221 q22.3 ov20,ov78,ov88,ov94 4 SLC25A32 ENSG00000164933 8 104410869 104427468 q22.3 ov20,ov78,ov88,ov94 4 WDSOF1 ENSG00000164934 8 104427219 104455678 q22.3 ov20,ov78,ov88,ov94 4 RIMS2 ENSG00000176406 8 104513115 105264087 q22.3 ov20,ov78,ov88,ov94 4 TM7SF4 ENSG00000164935 8 105352052 105368916 q22.3 ov20,ov78,ov88,ov94 4 DPYS ENSG00000147647 8 105391653 105479277 q22.3 ov20,ov78,ov88,ov94 4 LRP12 ENSG00000147650 8 105501467 105601220 q22.3 ov20,ov78,ov88,ov94 4 ZFPM2 ENSG00000169946 8 106331147 106816763 q23.1 ov20,ov78,ov88,ov94 4 OXR1 ENSG00000164830 8 107282473 107764917 q23.1 ov20,ov78,ov88,ov94 4 ABRA ENSG00000174429 8 107771712 107782472 q23.1 ov20,ov78,ov88,ov94 4 ANGPT1 ENSG00000154188 8 108261723 108510283 q23.1 ov20,ov78,ov88,ov94 4 EXT1 ENSG00000182197 8 118806729 119123938 q24.11 ov11,ov20,ov78,ov88 4 SAMD12 ENSG00000177570 8 119201698 119634184 q24.12 ov11,ov20,ov78,ov88 4 NOV ENSG00000136999 8 120428552 120436678 q24.12 ov20,ov78,ov88,ov94 4 ENPP2 ENSG00000136960 8 120569319 120651106 q24.12 ov20,ov78,ov88,ov94 4 TAF2 ENSG00000064313 8 120743015 120845074 q24.12 ov20,ov78,ov88,ov94 4 DSCC1 ENSG00000136982 8 120846184 120868170 q24.12 ov20,ov78,ov88,ov94 4 DEPDC6 ENSG00000155792 8 120885900 121063157 q24.12 ov20,ov78,ov88,ov94 4 COL14A1 ENSG00000187955 8 121137352 121384266 q24.12 ov20,ov78,ov88,ov94 4 MRPL13 ENSG00000172172 8 121408083 121457647 q24.12 ov20,ov78,ov88,ov94 4 MTBP ENSG00000172167 8 121457666 121535875 q24.12 ov20,ov78,ov88,ov94 4 SNTB1 ENSG00000172164 8 121547985 121824309 q24.12 ov20,ov78,ov88,ov94 4 HAS2 ENSG00000170961 8 122625271 122653630 q24.13 ov20,ov78,ov88,ov94 4 FAM84B ENSG00000168672 8 127564689 127570466 q24.21 ov20,ov78,ov88,ov94 4 POU5F1B ENSG00000212993 8 128427857 128429439 q24.21 ov20,ov78,ov88,ov94 4 FAM49B ENSG00000153310 8 130853718 131028697 q24.21 ov20,ov58,ov78,ov88 4 ADCY8 ENSG00000155897 8 131792554 132052835 q24.22 ov20,ov51,ov78,ov88 4 EFR3A ENSG00000132294 8 132916359 133025769 q24.22 ov20,ov51,ov78,ov88 4 OC90 ENSG00000132297 8 133036467 133123406 q24.22 ov20,ov51,ov78,ov88 4 GPR20 ENSG00000204882 8 142366585 142377365 q24.3 ov11,ov20,ov80,ov88 4 PTP4A3 ENSG00000184489 8 142432007 142441620 q24.3 ov11,ov20,ov80,ov88 4 TSNARE1 ENSG00000171045 8 143293442 143484539 q24.3 ov11,ov20,ov80,ov88 4 BAI1 ENSG00000181790 8 143545377 143626346 q24.3 ov11,ov20,ov80,ov88 4 ARC ENSG00000198576 8 143692410 143695833 q24.3 ov11,ov20,ov80,ov88 4 JRK ENSG00000234616 8 143738874 143751401 q24.3 ov11,ov20,ov80,ov88 4 PSCA ENSG00000167653 8 143761875 143764142 q24.3 ov11,ov20,ov80,ov88 4 LY6K ENSG00000160886 8 143781531 143785600 q24.3 ov11,ov20,ov80,ov88 4 C8orf55 ENSG00000130193 8 143808621 143818350 q24.3 ov11,ov20,ov80,ov88 4 SLURP1 ENSG00000126233 8 143822362 143823829 q24.3 ov11,ov20,ov80,ov88 4 LYPD2 ENSG00000197353 8 143831579 143833931 q24.3 ov11,ov20,ov80,ov88 4 LYNX1 ENSG00000180155 8 143845756 143859640 q24.3 ov11,ov20,ov80,ov88 4 LY6D ENSG00000167656 8 143866298 143868008 q24.3 ov11,ov20,ov80,ov88 4 GML ENSG00000104499 8 143916217 143928262 q24.3 ov11,ov20,ov80,ov88 4 CYP11B1 ENSG00000160882 8 143953778 143961236 q24.3 ov11,ov20,ov80,ov88 4 CYP11B2 ENSG00000179142 8 143991981 143999259 q24.3 ov11,ov20,ov80,ov88 4 NR4A1 ENSG00000123358 12 52432494 52453291 q13.13 ov108,ov11,ov18,ov53 4 C12orf44 ENSG00000123395 12 52463758 52471278 q13.13 ov108,ov11,ov18,ov53 4 KRT80 ENSG00000167767 12 52562780 52585784 q13.13 ov108,ov11,ov18,ov53 4 KRT7 ENSG00000135480 12 52626954 52642709 q13.13 ov108,ov11,ov18,ov53 4 KRT81 ENSG00000205426 12 52679699 52685299 q13.13 ov108,ov11,ov18,ov53 4 KRT86 ENSG00000170442 12 52695649 52702947 q13.13 ov108,ov11,ov18,ov53 4 KRT83 ENSG00000170523 12 52708085 52715182 q13.13 ov108,ov11,ov18,ov53 4 KRT85 ENSG00000135443 12 52753790 52761309 q13.13 ov108,ov11,ov18,ov53 4 KRT84 ENSG00000161849 12 52771596 52779417 q13.13 ov108,ov11,ov18,ov53 4 KRT82 ENSG00000161850 12 52787735 52800176 q13.13 ov108,ov11,ov18,ov53 4 ACCN1 ENSG00000108684 17 31340108 32483551 q12 ov102,ov33,ov48,ov61 4 CCL2 ENSG00000108691 17 32582296 32584216 q12 ov102,ov33,ov48,ov61 4 CCL7 ENSG00000108688 17 32597241 32599260 q12 ov102,ov33,ov48,ov61 4 CCL11 ENSG00000172156 17 32612687 32615199 q12 ov102,ov33,ov48,ov61 4 CCL8 ENSG00000108700 17 32646055 32648421 q12 ov102,ov33,ov48,ov61 4 CCL13 ENSG00000181374 17 32683471 32685628 q12 ov102,ov33,ov48,ov61 4 CCL1 ENSG00000108702 17 32687399 32690252 q12 ov102,ov33,ov48,ov61 4 C17orf102 ENSG00000197322 17 32901142 32906388 q12 ov102,ov33,ov48,ov61 4 TMEM132E ENSG00000181291 17 32907768 32966337 q12 ov102,ov33,ov48,ov61 4 GGNBP2 ENSG00000005955 17 34900804 34946274 q12 ov108,ov48,ov61,ov80 4 LHX1 ENSG00000132130 17 35294499 35300483 q12 ov108,ov48,ov58,ov61 4 AATF ENSG00000108270 17 35306175 35414170 q12 ov108,ov48,ov58,ov61 4 ACACA ENSG00000132142 17 35441933 35766902 q12 ov108,ov48,ov58,ov61 4 MRPL45 ENSG00000174100 17 36452998 36479100 q12 ov108,ov33,ov61,ov80 4 GPR179 ENSG00000188888 17 36481493 36499693 q12 ov108,ov33,ov61,ov80 4 SOCS7 ENSG00000174111 17 36508005 36556015 q12 ov108,ov33,ov61,ov80 4 PCGF2 ENSG00000056661 17 36890150 36904558 q12 ov108,ov33,ov58,ov61 4 PSMB3 ENSG00000108294 17 36909002 36920477 q12 ov108,ov33,ov58,ov61 4 PIP4K2B ENSG00000141720 17 36921944 36956158 q12 ov108,ov33,ov58,ov61 4 CCDC49 ENSG00000108296 17 36957447 36981589 q12 ov108,ov33,ov58,ov61 4 C17orf98 ENSG00000214556 17 36991341 36997642 q12 ov108,ov33,ov58,ov61 4 RPL23 ENSG00000125691 17 37004118 37010053 q12 ov108,ov33,ov58,ov61 4 LASP1 ENSG00000002834 17 37026112 37078023 q12 ov108,ov33,ov58,ov61 4 MSL1 ENSG00000188895 17 38278790 38293040 q21.1 ov102,ov33,ov58,ov61 4 CASC3 ENSG00000108349 17 38296507 38328431 q21.1 ov102,ov33,ov58,ov61 4 RAPGEFL1 ENSG00000108352 17 38333309 38351906 q21.1 ov102,ov33,ov58,ov61 4 WIPF2 ENSG00000171475 17 38375574 38438439 q21.1 ov102,ov33,ov58,ov61 4 KRTAP4-6 ENSG00000198090 17 39295685 39296739 q21.2 ov102,ov33,ov58,ov61 4 KRTAP4-5 ENSG00000198271 17 39305178 39306054 q21.2 ov102,ov33,ov58,ov61 4 KRTAP4-4 ENSG00000171396 17 39315910 39316983 q21.2 ov102,ov33,ov58,ov61 4 KRTAP4-3 ENSG00000196156 17 39323484 39324424 q21.2 ov102,ov33,ov58,ov61 4 KRTAP4-2 ENSG00000198443 17 39333698 39343319 q21.2 ov102,ov33,ov58,ov61 4 MYL4 ENSG00000198336 17 45286428 45301045 q21.32 ov14,ov58,ov61,ov80 4 ITGB3 ENSG00000056345 17 45331208 45390077 q21.32 ov14,ov58,ov61,ov80 4 C17orf57 ENSG00000178852 17 45401347 45518675 q21.32 ov14,ov58,ov61,ov80 4 KPNB1 ENSG00000108424 17 45727275 45761004 q21.32 ov31,ov58,ov61,ov80 4 TBKBP1 ENSG00000198933 17 45772630 45789427 q21.32 ov31,ov58,ov61,ov80 4 TBX21 ENSG00000073861 17 45810610 45823485 q21.32 ov31,ov58,ov61,ov80 4 OSBPL7 ENSG00000006025 17 45884733 45899147 q21.32 ov31,ov58,ov61,ov80 4 MRPL10 ENSG00000159111 17 45900639 45908903 q21.32 ov31,ov58,ov61,ov80 4 LRRC46 ENSG00000141294 17 45909078 45914856 q21.32 ov31,ov58,ov61,ov80 4 SCRN2 ENSG00000141295 17 45915049 45918699 q21.32 ov31,ov58,ov61,ov80 4 SP6 ENSG00000189120 17 45922280 45933240 q21.32 ov31,ov58,ov61,ov80 4 SP2 ENSG00000167182 17 45973516 46006321 q21.32 ov31,ov58,ov61,ov80 4 PNPO ENSG00000108439 17 46018889 46026673 q21.32 ov31,ov58,ov61,ov80 4 ATAD4 ENSG00000167183 17 46029336 46035110 q21.32 ov31,ov58,ov61,ov80 4 CDK5RAP3 ENSG00000108465 17 46048429 46059147 q21.32 ov31,ov58,ov61,ov80 4 WFIKKN2 ENSG00000173714 17 48912011 48919707 q21.33 ov56,ov58,ov61,ov80 4 TOB1 ENSG00000141232 17 48940341 48945339 q21.33 ov56,ov58,ov61,ov80 4 SPAG9 ENSG00000008294 17 49039535 49198226 q21.33 ov56,ov58,ov61,ov80 4 MSI2 ENSG00000153944 17 55333931 55757299 q22 ov108,ov58,ov61,ov99 4 ABCA8 ENSG00000141338 17 66863433 66951533 q24.2 ov108,ov58,ov61,ov99 4 ABCA9 ENSG00000154258 17 66970773 67057136 q24.2 ov108,ov58,ov61,ov99 4 ABCA6 ENSG00000154262 17 67074847 67138015 q24.3 ov108,ov58,ov61,ov99 4 ABCA10 ENSG00000154263 17 67144148 67240987 q24.3 ov108,ov58,ov61,ov99 4 ABCA5 ENSG00000154265 17 67240576 67323323 q24.3 ov108,ov58,ov61,ov99 4 SLC39A11 ENSG00000133195 17 70642089 71088832 q25.1 ov108,ov58,ov61,ov65 4 CD300E ENSG00000186407 17 72606026 72619883 q25.1 ov108,ov61,ov65,ov77 4 RAB37 ENSG00000172794 17 72666717 72743474 q25.1 ov108,ov61,ov65,ov77 4 CD300LF ENSG00000186074 17 72690452 72709108 q25.1 ov108,ov61,ov65,ov77 4 SLC9A3R1 ENSG00000109062 17 72744763 72765498 q25.1 ov108,ov61,ov65,ov77 4 NAT9 ENSG00000109065 17 72766688 72772470 q25.1 ov108,ov61,ov65,ov77 4 TMEM104 ENSG00000109066 17 72772622 72835918 q25.1 ov108,ov61,ov65,ov77 4 GRIN2C ENSG00000161509 17 72838166 72856966 q25.1 ov108,ov61,ov65,ov77 4 FDXR ENSG00000161513 17 72858623 72869156 q25.1 ov108,ov61,ov65,ov77 4 FADS6 ENSG00000172782 17 72873481 72889715 q25.1 ov108,ov61,ov65,ov77 4 USH1G ENSG00000182040 17 72912176 72919351 q25.1 ov108,ov61,ov65,ov77 4 OTOP2 ENSG00000183034 17 72920370 72929640 q25.1 ov108,ov61,ov65,ov77 4 ARMC7 ENSG00000125449 17 73106082 73126360 q25.1 ov108,ov58,ov61,ov65 4 NT5C ENSG00000125458 17 73126324 73127877 q25.1 ov108,ov58,ov61,ov65 4 HN1 ENSG00000189159 17 73131343 73150778 q25.1 ov108,ov58,ov61,ov65 4 SUMO2 ENSG00000188612 17 73163825 73179098 q25.1 ov108,ov58,ov61,ov65 4 NUP85 ENSG00000125450 17 73201597 73231854 q25.1 ov108,ov58,ov61,ov65 4 GGA3 ENSG00000125447 17 73232695 73257677 q25.1 ov108,ov58,ov61,ov65 4 MRPS7 ENSG00000125445 17 73257749 73262456 q25.1 ov108,ov58,ov61,ov65 4 MIF4GD ENSG00000125457 17 73262313 73267303 q25.1 ov108,ov58,ov61,ov65 4 CDK3 ENSG00000108504 17 73975312 74002080 q25.1 ov108,ov58,ov61,ov65 4 EVPL ENSG00000167880 17 74002927 74023507 q25.1 ov108,ov58,ov61,ov65 4 SRP68 ENSG00000167881 17 74035191 74068607 q25.1 ov108,ov58,ov61,ov65 4 GALR2 ENSG00000182687 17 74070884 74073573 q25.1 ov108,ov58,ov61,ov65 4 ZACN ENSG00000186919 17 74075263 74078885 q25.1 ov108,ov58,ov61,ov65 4 EXOC7 ENSG00000182473 17 74077087 74099856 q25.1 ov108,ov58,ov61,ov65 4 FOXJ1 ENSG00000129654 17 74132425 74137371 q25.1 ov108,ov58,ov61,ov65 4 RNF157 ENSG00000141576 17 74138535 74236390 q25.1 ov108,ov58,ov61,ov65 4 FAM100B ENSG00000185262 17 74261286 74267379 q25.1 ov108,ov58,ov61,ov65 4 QRICH2 ENSG00000129646 17 74262000 74303761 q25.1 ov108,ov58,ov61,ov65 4 USP36 ENSG00000055483 17 76792965 76836969 q25.3 ov56,ov61,ov65,ov80 4 RNF213 ENSG00000173821 17 78313726 78370085 q25.3 ov33,ov58,ov61,ov65 4 NPTX1 ENSG00000171246 17 78440633 78450404 q25.3 ov33,ov58,ov61,ov65 4 AATK ENSG00000181409 17 79091104 79139872 q25.3 ov1,ov33,ov56,ov58 4 AZI1 ENSG00000141577 17 79163393 79196751 q25.3 ov1,ov33,ov56,ov58 4 C17orf56 ENSG00000167302 17 79202079 79212855 q25.3 ov1,ov33,ov56,ov58 4 C17orf89 ENSG00000224877 17 79213111 79215098 q25.3 ov1,ov33,ov56,ov58 4 SLC38A10 ENSG00000157637 17 79218801 79269096 q25.3 ov1,ov33,ov56,ov58 4 C17orf55 ENSG00000185168 17 79276624 79283048 q25.3 ov1,ov33,ov56,ov58 4 TMEM105 ENSG00000185332 17 79285074 79304474 q25.3 ov1,ov33,ov56,ov58 4 KLF1 ENSG00000105610 19 12995236 12998017 p13.2 ov102,ov31,ov61,ov80 4 GCDH ENSG00000105607 19 13001974 13010782 p13.2 ov102,ov31,ov61,ov80 4 SYCE2 ENSG00000161860 19 13009600 13030076 p13.2 ov102,ov31,ov61,ov80 4 FARSA ENSG00000179115 19 13033284 13044558 p13.2 ov102,ov31,ov61,ov80 4 CALR ENSG00000179218 19 13049414 13055304 p13.2 ov102,ov31,ov61,ov80 4 RAD23A ENSG00000179262 19 13056654 13064448 p13.2 ov102,ov31,ov61,ov80 4 GADD45GIP1 ENSG00000179271 19 13064972 13068050 p13.2 ov102,ov31,ov61,ov80 4 DAND5 ENSG00000179284 19 13080432 13085567 p13.2 ov102,ov31,ov61,ov80 4 NFIX ENSG00000008441 19 13106584 13209610 p13.2 ov102,ov31,ov61,ov80 4 LYL1 ENSG00000104903 19 13209848 13213681 p13.2 ov102,ov31,ov61,ov80 4 TRMT1 ENSG00000104907 19 13215716 13227563 p13.2 ov102,ov31,ov61,ov80 4 NACC1 ENSG00000160877 19 13229109 13251955 p13.2 ov102,ov31,ov61,ov80 4 STX10 ENSG00000104915 19 13254903 13261052 p13.2 ov102,ov31,ov61,ov80 4 IER2 ENSG00000160888 19 13261282 13265716 p13.2 ov102,ov31,ov61,ov80 4 CACNA1A ENSG00000141837 19 13317256 13617274 p13.2 ov102,ov31,ov61,ov80 4 ZFP14 ENSG00000142065 19 36827162 36870078 q13.12 ov11,ov40,ov55,ov61 4 ZFP82 ENSG00000181007 19 36874593 36909558 q13.12 ov11,ov40,ov55,ov61 4 ZNF566 ENSG00000186017 19 36936021 36980463 q13.12 ov11,ov40,ov55,ov61 4 ZNF529 ENSG00000186020 19 37034518 37064197 q13.12 ov11,ov40,ov55,ov61 4 ZNF382 ENSG00000161298 19 37095719 37119744 q13.12 ov11,ov40,ov55,ov61 4 ZNF461 ENSG00000197808 19 37128283 37157739 q13.12 ov11,ov40,ov55,ov61 4 ZNF567 ENSG00000189042 19 37180302 37212223 q13.12 ov11,ov40,ov55,ov61 4 ZNF790 ENSG00000197863 19 37308336 37329284 q13.12 ov11,ov40,ov55,ov61 4 ZNF345 ENSG00000167637 19 37341263 37383887 q13.12 ov11,ov40,ov55,ov61 4 ZNF568 ENSG00000198453 19 37407231 37488501 q13.12 ov11,ov40,ov55,ov61 4 ZNF420 ENSG00000197050 19 37569321 37621138 q13.12 ov11,ov40,ov55,ov61 4 ZNF585A ENSG00000196967 19 37597639 37663628 q13.12 ov11,ov40,ov55,ov61 4 ZNF585B ENSG00000197800 19 37675724 37701453 q13.12 ov11,ov40,ov55,ov61 4 ZNF383 ENSG00000188283 19 37709182 37734823 q13.12 ov11,ov40,ov55,ov61 4 ZNF527 ENSG00000189164 19 37862059 37883968 q13.12 ov11,ov40,ov55,ov61 4 ZNF569 ENSG00000196437 19 37902062 37960165 q13.12 ov11,ov40,ov55,ov61 4 ZNF570 ENSG00000171827 19 37959982 37976242 q13.12 ov11,ov40,ov55,ov61 4 ZNF793 ENSG00000188227 19 37997841 38034237 q13.12 ov11,ov40,ov55,ov61 4 ZNF540 ENSG00000171817 19 38039811 38104994 q13.12 ov11,ov40,ov55,ov61 4 ZNF571 ENSG00000180479 19 38053294 38085691 q13.12 ov11,ov40,ov55,ov61 4 ZFP30 ENSG00000120784 19 38123389 38146313 q13.12 ov11,ov40,ov55,ov61 4 ZNF781 ENSG00000196381 19 38158650 38183216 q13.12 ov11,ov40,ov55,ov61 4 ZNF607 ENSG00000198182 19 38187276 38210691 q13.12 ov11,ov40,ov55,ov61 4 ZNF573 ENSG00000189144 19 38229203 38307940 q13.13 ov11,ov40,ov55,ov61 4 WDR87 ENSG00000171804 19 38375472 38397317 q13.13 ov11,ov40,ov55,ov61 4 SIPA1L3 ENSG00000105738 19 38397868 38699009 q13.13 ov11,ov40,ov55,ov61 4 DPF1 ENSG00000011332 19 38701649 38720354 q13.2 ov11,ov40,ov55,ov61 4 PPP1R14A ENSG00000167641 19 38741877 38747231 q13.2 ov11,ov40,ov55,ov61 4 SPINT2 ENSG00000167642 19 38755202 38783108 q13.2 ov11,ov40,ov55,ov61 4 C19orf33 ENSG00000167644 19 38794804 38795646 q13.2 ov11,ov40,ov55,ov61 4 YIF1B ENSG00000167645 19 38795744 38806606 q13.2 ov11,ov40,ov55,ov61 4 KCNK6 ENSG00000099337 19 38810482 38819640 q13.2 ov11,ov40,ov55,ov61 4 C19orf15 ENSG00000099338 19 38826415 38861589 q13.2 ov11,ov40,ov55,ov61 4 PSMD8 ENSG00000099341 19 38865190 38874463 q13.2 ov11,ov40,ov55,ov61 4 GGN ENSG00000179168 19 38874905 38878668 q13.2 ov11,ov40,ov55,ov61 4 SPRED3 ENSG00000188766 19 38880840 38886868 q13.2 ov11,ov40,ov55,ov61 4 FAM98C ENSG00000130244 19 38893775 38899728 q13.2 ov11,ov40,ov55,ov61 4 RASGRP4 ENSG00000171777 19 38899698 38916945 q13.2 ov11,ov40,ov55,ov61 4 KCNC3 ENSG00000131398 19 50815194 50832634 q13.33 ov11,ov2,ov40,ov61 4 NAPSB ENSG00000131401 19 50837059 50848018 q13.33 ov11,ov2,ov40,ov61 4 NAPSA ENSG00000131400 19 50861735 50868931 q13.33 ov11,ov2,ov40,ov61 4 NR1H2 ENSG00000131408 19 50879685 50886266 q13.33 ov11,ov2,ov40,ov61 4 POLD1 ENSG00000062822 19 50887593 50921270 q13.33 ov11,ov2,ov40,ov61 4 SPIB ENSG00000142539 19 50922198 50934305 q13.33 ov11,ov2,ov40,ov61 4 MYBPC2 ENSG00000086967 19 50936160 50969583 q13.33 ov11,ov2,ov40,ov61 4 FAM71E1 ENSG00000142530 19 50970047 50980003 q13.33 ov11,ov2,ov40,ov61 4 C19orf63 ENSG00000161671 19 50970090 50986607 q13.33 ov11,ov2,ov40,ov61 4 JOSD2 ENSG00000161677 19 51009259 51014477 q13.33 ov11,ov2,ov40,ov61 4 ASPDH ENSG00000204653 19 51014858 51017947 q13.33 ov11,ov2,ov40,ov61 4 LRRC4B ENSG00000131409 19 51020149 51071302 q13.33 ov11,ov2,ov40,ov61 4 SYT3 ENSG00000213023 19 51125236 51141302 q13.33 ov11,ov2,ov40,ov61 4 SHANK1 ENSG00000161681 19 51165084 51222707 q13.33 ov11,ov2,ov40,ov61 4 CLEC11A ENSG00000105472 19 51226605 51228979 q13.33 ov11,ov2,ov40,ov61 4 GPR32 ENSG00000142511 19 51273721 51274989 q13.33 ov11,ov2,ov40,ov61 4 ACPT ENSG00000142513 19 51293672 51298481 q13.33 ov11,ov2,ov40,ov61 4 C19orf48 ENSG00000167747 19 51300962 51307974 q13.33 ov11,ov2,ov40,ov61 4 KLK1 ENSG00000167748 19 51322404 51327043 q13.33 ov11,ov2,ov40,ov61 4 KLK15 ENSG00000174562 19 51328545 51334779 q13.33 ov11,ov2,ov40,ov61 4 SIGLEC10 ENSG00000142512 19 51913276 52005001 q13.41 ov11,ov2,ov40,ov55 4 SIGLEC8 ENSG00000105366 19 51954101 51961708 q13.41 ov11,ov2,ov40,ov55 4 CEACAM18 ENSG00000213822 19 51979838 51988359 q13.41 ov11,ov2,ov40,ov55 4 SIGLEC6 ENSG00000105492 19 52020951 52035110 q13.41 ov11,ov2,ov40,ov55 4 ZNF175 ENSG00000105497 19 52074531 52092993 q13.41 ov11,ov2,ov40,ov55 4 SIGLEC14 ENSG00000105501 19 52114781 52150151 q13.41 ov11,ov2,ov40,ov55 4 C20orf54 ENSG00000101276 20 740725 749228 p13 ov100,ov11,ov80,ov81 4 FAM110A ENSG00000125898 20 814356 837992 p13 ov100,ov11,ov80,ov81 4 RPS10P5 ENSG00000101278 20 820043 820620 p13 ov100,ov11,ov80,ov81 4 ANGPT4 ENSG00000101280 20 853299 896962 p13 ov100,ov11,ov80,ov81 4 RSPO4 ENSG00000101282 20 939098 982904 p13 ov100,ov11,ov80,ov81 4 PSMF1 ENSG00000125818 20 1093906 1160596 p13 ov100,ov11,ov80,ov81 4 C20orf46 ENSG00000125895 20 1161215 1165319 p13 ov100,ov11,ov80,ov81 4 RAD21L1 ENSG00000101298 20 1206700 1289972 p13 ov100,ov11,ov80,ov81 4 SDCBP2 ENSG00000125775 20 1290619 1309838 p13 ov100,ov11,ov80,ov81 4 BMP2 ENSG00000125845 20 6748745 6760910 p12.3 ov34,ov48,ov81,ov93 4 MACROD2 ENSG00000172264 20 13976015 16033842 p12.1 ov100,ov58,ov80,ov81 4 TTLL9 ENSG00000131044 20 30458505 30532770 q11.21 ov11,ov33,ov58,ov80 4 MAPRE1 ENSG00000101367 20 31407699 31438210 q11.21 ov11,ov33,ov58,ov80 4 EFCAB8 ENSG00000215529 20 31446729 31549415 q11.21 ov11,ov33,ov58,ov80 4 SPAG4L ENSG00000167098 20 31571581 31592239 q11.21 ov11,ov33,ov58,ov80 4 BPIL1 ENSG00000078898 20 31595406 31611514 q11.21 ov11,ov33,ov58,ov80 4 BPIL3 ENSG00000167104 20 31619454 31631853 q11.21 ov11,ov33,ov58,ov80 4 C20orf185 ENSG00000186190 20 31643137 31661443 q11.21 ov11,ov33,ov58,ov80 4 C20orf186 ENSG00000186191 20 31667450 31703376 q11.21 ov11,ov33,ov58,ov80 4 C20orf70 ENSG00000131050 20 31749574 31769218 q11.21 ov11,ov33,ov58,ov80 4 C20orf71 ENSG00000131059 20 31805135 31815557 q11.21 ov11,ov33,ov58,ov80 4 PLUNC ENSG00000198183 20 31823801 31831115 q11.21 ov11,ov33,ov58,ov80 4 C20orf114 ENSG00000125999 20 31861286 31897684 q11.21 ov11,ov33,ov58,ov80 4 CDK5RAP1 ENSG00000101391 20 31946645 31989337 q11.21 ov11,ov33,ov58,ov80 4 Supplementary Table 2 Page 6
SNTA1 ENSG00000101400 20 31995763 32031698 q11.21 ov11,ov33,ov58,ov80 4 CBFA2T2 ENSG00000078699 20 32077923 32237842 q11.21 ov11,ov33,ov58,ov80 4 NECAB3 ENSG00000125967 20 32244894 32262264 q11.22 ov11,ov33,ov58,ov80 4 C20orf144 ENSG00000149609 20 32250090 32251721 q11.22 ov11,ov33,ov58,ov80 4 C20orf134 ENSG00000182584 20 32254304 32256331 q11.22 ov11,ov33,ov58,ov80 4 E2F1 ENSG00000101412 20 32263293 32274210 q11.22 ov11,ov33,ov58,ov80 4 PXMP4 ENSG00000101417 20 32290548 32308136 q11.22 ov11,ov33,ov58,ov80 4 ZNF341 ENSG00000131061 20 32319463 32380075 q11.22 ov11,ov33,ov58,ov80 4 CHMP4B ENSG00000101421 20 32399119 32442169 q11.22 ov11,ov33,ov58,ov80 4 RALY ENSG00000125970 20 32581485 32668036 q11.22 ov11,ov33,ov58,ov80 4 EIF2S2 ENSG00000125977 20 32676115 32700085 q11.22 ov11,ov33,ov58,ov80 4 AHCY ENSG00000101444 20 32822646 32891150 q11.22 ov11,ov33,ov58,ov80 4 ASIP ENSG00000101440 20 32848171 32857148 q11.22 ov11,ov33,ov58,ov80 4 ITCH ENSG00000078747 20 32951062 33099197 q11.22 ov11,ov33,ov58,ov80 4 DYNLRB1 ENSG00000125971 20 33104204 33128761 q11.22 ov11,ov33,ov58,ov80 4 MAP1LC3A ENSG00000101460 20 33134692 33148149 q11.22 ov11,ov33,ov58,ov80 4 PIGU ENSG00000101464 20 33148346 33265089 q11.22 ov11,ov33,ov58,ov80 4 TP53INP2 ENSG00000078804 20 33292143 33301243 q11.22 ov11,ov33,ov58,ov80 4 NCOA6 ENSG00000198646 20 33302578 33413433 q11.22 ov11,ov33,ov58,ov80 4 GGT7 ENSG00000131067 20 33432523 33460661 q11.22 ov11,ov33,ov58,ov80 4 ACSS2 ENSG00000131069 20 33462745 33515762 q11.22 ov11,ov33,ov58,ov80 4 GSS ENSG00000100983 20 33516237 33543601 q11.22 ov11,ov33,ov58,ov80 4 MYH7B ENSG00000078814 20 33563298 33590240 q11.22 ov11,ov33,ov58,ov80 4 TRPC4AP ENSG00000100991 20 33590215 33680618 q11.22 ov11,ov33,ov58,ov80 4 EDEM2 ENSG00000088298 20 33703160 33735161 q11.22 ov11,ov33,ov58,ov80 4 PROCR ENSG00000101000 20 33758727 33765165 q11.22 ov11,ov33,ov58,ov80 4 EIF6 ENSG00000126005 20 33805628 33872788 q11.22 ov11,ov33,ov58,ov80 4 MMP24 ENSG00000125966 20 33814539 33864804 q11.22 ov11,ov33,ov58,ov80 4 FAM83C ENSG00000125998 20 33873287 33880225 q11.22 ov11,ov33,ov58,ov80 4 UQCC ENSG00000101019 20 33890369 33999834 q11.22 ov11,ov33,ov58,ov80 4 GDF5OS ENSG00000204183 20 34020827 34023248 q11.22 ov11,ov33,ov58,ov80 4 GDF5 ENSG00000125965 20 34021145 34042568 q11.22 ov11,ov33,ov58,ov80 4 CEP250 ENSG00000126001 20 34042985 34099804 q11.22 ov11,ov33,ov58,ov80 4 C20orf173 ENSG00000125975 20 34108569 34117481 q11.22 ov11,ov33,ov58,ov80 4 ERGIC3 ENSG00000125991 20 34129778 34145404 q11.22 ov11,ov33,ov58,ov80 4 SPAG4 ENSG00000061656 20 34203809 34208971 q11.22 ov11,ov33,ov58,ov80 4 CPNE1 ENSG00000214078 20 34213966 34287277 q11.22 ov11,ov33,ov58,ov80 4 ROMO1 ENSG00000125995 20 34287194 34288906 q11.22 ov11,ov33,ov58,ov80 4 RBM39 ENSG00000131051 20 34291533 34330196 q11.22 ov11,ov33,ov58,ov80 4 PHF20 ENSG00000025293 20 34359923 34538288 q11.22 ov11,ov33,ov58,ov80 4 SCAND1 ENSG00000171222 20 34541546 34547394 q11.23 ov11,ov33,ov58,ov80 4 C20orf152 ENSG00000149646 20 34556529 34618622 q11.23 ov11,ov33,ov58,ov80 4 EPB41L1 ENSG00000088367 20 34679426 34820721 q11.23 ov11,ov33,ov58,ov80 4 C20orf4 ENSG00000131043 20 34824400 34858664 q11.23 ov11,ov33,ov58,ov80 4 DLGAP4 ENSG00000080845 20 34894303 35157040 q11.23 ov11,ov33,ov58,ov80 4 MYL9 ENSG00000101335 20 35169897 35178226 q11.23 ov11,ov33,ov58,ov80 4 TGIF2 ENSG00000118707 20 35201891 35222353 q11.23 ov11,ov33,ov58,ov80 4 C20orf24 ENSG00000101084 20 35234167 35240956 q11.23 ov11,ov33,ov58,ov80 4 SLA2 ENSG00000101082 20 35240926 35274558 q11.23 ov11,ov33,ov58,ov80 4 C20orf117 ENSG00000149639 20 35405845 35492089 q11.23 ov11,ov33,ov58,ov80 4 C20orf118 ENSG00000101342 20 35504570 35522638 q11.23 ov11,ov33,ov58,ov80 4 SAMHD1 ENSG00000101347 20 35520645 35580176 q11.23 ov11,ov33,ov58,ov80 4 RBL1 ENSG00000080839 20 35626178 35724410 q11.23 ov11,ov33,ov58,ov80 4 C20orf132 ENSG00000101353 20 35729629 35807991 q11.23 ov11,ov33,ov58,ov80 4 RPN2 ENSG00000118705 20 35806813 35870020 q11.23 ov11,ov33,ov58,ov80 4 YTHDF1 ENSG00000149658 20 61826784 61847538 q13.33 ov33,ov39,ov40,ov78 4 BIRC7 ENSG00000101197 20 61867235 61871854 q13.33 ov33,ov39,ov40,ov78 4 NKAIN4 ENSG00000101198 20 61869286 61904046 q13.33 ov33,ov39,ov40,ov78 4 ARFGAP1 ENSG00000101199 20 61904165 61921142 q13.33 ov33,ov39,ov40,ov78 4 PCBP3 ENSG00000183570 21 47063608 47362368 q22.3 ov2,ov66,ov88,ov94 4 ARHGEF16 ENSG00000130762 1 3371147 3397677 p36.32 ov29,ov33,ov66 3 MEGF6 ENSG00000162591 1 3404513 3528059 p36.32 ov29,ov33,ov66 3 TPRG1L ENSG00000158109 1 3541556 3546689 p36.32 ov29,ov33,ov66 3 WDR8 ENSG00000116213 1 3547332 3566671 p36.32 ov29,ov33,ov66 3 TP73 ENSG00000078900 1 3569129 3650467 p36.32 ov29,ov33,ov66 3 CCDC27 ENSG00000162592 1 3668962 3688209 p36.32 ov29,ov33,ov66 3 LRRC47 ENSG00000130764 1 3696784 3713068 p36.32 ov29,ov33,ov66 3 KIAA0562 ENSG00000116198 1 3731344 3773797 p36.32 ov29,ov33,ov66 3 DFFB ENSG00000169598 1 3773845 3801993 p36.32 ov29,ov33,ov66 3 C1orf174 ENSG00000198912 1 3805703 3816857 p36.32 ov29,ov33,ov66 3 CAMTA1 ENSG00000171735 1 6845384 7829764 p36.31 ov29,ov48,ov66 3 VAMP3 ENSG00000049245 1 7831329 7841491 p36.23 ov29,ov48,ov66 3 EPHA2 ENSG00000142627 1 16450833 16482564 p36.13 ov39,ov58,ov66 3 ARHGEF19 ENSG00000142632 1 16524599 16539140 p36.13 ov39,ov58,ov66 3 C1orf224 ENSG00000237276 1 16542404 16543655 p36.13 ov39,ov58,ov66 3 C1orf134 ENSG00000204377 1 16555170 16556094 p36.13 ov39,ov58,ov66 3 C1orf89 ENSG00000132881 1 16558195 16563591 p36.13 ov39,ov58,ov66 3 FBXO42 ENSG00000037637 1 16576560 16678948 p36.13 ov39,ov58,ov66 3 C1orf144 ENSG00000055070 1 16693583 16724639 p36.13 ov39,ov58,ov66 3 SPATA21 ENSG00000187144 1 16722176 16763919 p36.13 ov39,ov58,ov66 3 NECAP2 ENSG00000157191 1 16767167 16786582 p36.13 ov39,ov58,ov66 3 ASAP3 ENSG00000088280 1 23755056 23810750 p36.12 ov5074,ov58,ov66 3 PTPRU ENSG00000060656 1 29563047 29653313 p35.3 ov58,ov66,ov92 3 RYK ENSG00000163785 3 133875978 133969494 q22.2 ov52,ov58,ov65 3 RPL39P5 ENSG00000214289 3 134070694 134075403 q22.2 ov52,ov58,ov65 3 AMOTL2 ENSG00000114019 3 134074190 134093406 q22.2 ov52,ov58,ov65 3 ADAMTS16 ENSG00000145536 5 5140443 5320412 p15.32 ov44,ov48,ov53 3 MED10 ENSG00000133398 5 6372040 6378639 p15.31 ov44,ov48,ov53 3 NSUN2 ENSG00000037474 5 6599355 6633157 p15.31 ov44,ov48,ov53 3 SRD5A1 ENSG00000145545 5 6633500 6669673 p15.31 ov44,ov48,ov53 3 POLS ENSG00000112941 5 6714718 6757161 p15.31 ov44,ov48,ov53 3 ADCY2 ENSG00000078295 5 7396343 7830194 p15.31 ov44,ov48,ov53 3 C5orf49 ENSG00000215217 5 7830494 7851603 p15.31 ov44,ov48,ov53 3 FASTKD3 ENSG00000124279 5 7859273 7869122 p15.31 ov44,ov48,ov53 3 MTRR ENSG00000124275 5 7869217 7901233 p15.31 ov44,ov48,ov53 3 SEMA5A ENSG00000112902 5 9035139 9546233 p15.31 ov44,ov48,ov53 3 38777 ENSG00000145495 5 10353828 10435491 p15.2 ov44,ov48,ov53 3 ROPN1L ENSG00000145491 5 10442009 10465135 p15.2 ov44,ov48,ov53 3 ANKRD33B ENSG00000164236 5 10564580 10650225 p15.2 ov44,ov48,ov53 3 DAP ENSG00000112977 5 10679343 10761387 p15.2 ov44,ov48,ov53 3 CTNND2 ENSG00000169862 5 10971978 11904110 p15.2 ov44,ov48,ov53 3 TACC1 ENSG00000147526 8 38586102 38710546 p11.22 ov58,ov80,ov94 3 PLEKHA2 ENSG00000169499 8 38758753 38831428 p11.22 ov58,ov80,ov94 3 HTRA4 ENSG00000169495 8 38831668 38846156 p11.22 ov58,ov80,ov94 3 TM2D2 ENSG00000169490 8 38846327 38854041 p11.22 ov58,ov80,ov94 3 ADAM9 ENSG00000168615 8 38854505 38962777 p11.22 ov58,ov80,ov94 3 ADAM32 ENSG00000197140 8 38965050 39142435 p11.22 ov58,ov80,ov94 3 C8orf4 ENSG00000176907 8 40010989 40012821 p11.21 ov20,ov58,ov94 3 ZMAT4 ENSG00000165061 8 40388113 40755343 p11.21 ov20,ov54,ov94 3 PRKDC ENSG00000121031 8 48685669 48872743 q11.21 ov20,ov58,ov94 3 UBE2V2 ENSG00000169139 8 48920995 48974450 q11.21 ov20,ov88,ov94 3 EFCAB1 ENSG00000034239 8 49627474 49647870 q11.21 ov20,ov88,ov94 3 SNAI2 ENSG00000019549 8 49830249 49834299 q11.21 ov20,ov88,ov94 3 C8orf22 ENSG00000168333 8 49984903 49988642 q11.21 ov20,ov88,ov94 3 SNTG1 ENSG00000147481 8 51306754 51705427 q11.21 ov20,ov88,ov94 3 PXDNL ENSG00000147485 8 52232145 52722005 q11.23 ov20,ov88,ov94 3 PCMTD1 ENSG00000168300 8 52730140 52811735 q11.23 ov20,ov88,ov94 3 ST18 ENSG00000147488 8 53023392 53322439 q11.23 ov20,ov88,ov94 3 FAM150A ENSG00000196711 8 53446600 53478021 q11.23 ov20,ov88,ov94 3 RB1CC1 ENSG00000023287 8 53535016 53627026 q11.23 ov20,ov88,ov94 3 NPBWR1 ENSG00000183729 8 53850993 53853677 q11.23 ov20,ov88,ov94 3 OPRK1 ENSG00000082556 8 54138276 54164194 q11.23 ov20,ov88,ov94 3 ATP6V1H ENSG00000047249 8 54628116 54755850 q11.23 ov20,ov88,ov94 3 RGS20 ENSG00000147509 8 54764368 54871861 q11.23 ov20,ov88,ov94 3 TCEA1 ENSG00000187735 8 54879119 54935008 q11.23 ov20,ov88,ov94 3 LYPLA1 ENSG00000120992 8 54958939 55014577 q11.23 ov20,ov88,ov94 3 MRPL15 ENSG00000137547 8 55047781 55061074 q11.23 ov20,ov88,ov94 3 SOX17 ENSG00000164736 8 55370495 55373456 q11.23 ov20,ov88,ov94 3 RP1 ENSG00000104237 8 55471745 55682530 q11.23 ov20,ov88,ov94 3 XKR4 ENSG00000206579 8 56015049 56436786 q12.1 ov20,ov88,ov94 3 TMEM68 ENSG00000167904 8 56651320 56685885 q12.1 ov20,ov88,ov94 3 TGS1 ENSG00000137574 8 56685701 56738003 q12.1 ov20,ov88,ov94 3 LYN ENSG00000147507 8 56792386 56923933 q12.1 ov20,ov88,ov94 3 RPS20 ENSG00000008988 8 56982297 56987069 q12.1 ov20,ov88,ov94 3 MOS ENSG00000172680 8 57025501 57026541 q12.1 ov20,ov88,ov94 3 PLAG1 ENSG00000181690 8 57073468 57123859 q12.1 ov20,ov88,ov94 3 CHCHD7 ENSG00000170791 8 57124315 57131174 q12.1 ov20,ov88,ov94 3 SDR16C5 ENSG00000170786 8 57212568 57233241 q12.1 ov20,ov88,ov94 3 SDR16C6 ENSG00000228117 8 57285627 57307924 q12.1 ov20,ov88,ov94 3 PENK ENSG00000181195 8 57353517 57359282 q12.1 ov20,ov88,ov94 3 IMPAD1 ENSG00000104331 8 57870491 57906427 q12.1 ov20,ov88,ov94 3 C8orf71 ENSG00000215117 8 58192102 58197269 q12.1 ov20,ov88,ov94 3 FAM110B ENSG00000169122 8 58907113 59062277 q12.1 ov20,ov88,ov94 3 UBXN2B ENSG00000215114 8 59323823 59364059 q12.1 ov20,ov88,ov94 3 CYP7A1 ENSG00000167910 8 59402737 59412720 q12.1 ov20,ov88,ov94 3 SDCBP ENSG00000137575 8 59465728 59495418 q12.1 ov20,ov88,ov94 3 NSMAF ENSG00000035681 8 59496070 59572404 q12.1 ov20,ov88,ov94 3 TOX ENSG00000198846 8 59717977 60031767 q12.1 ov20,ov88,ov94 3 CA8 ENSG00000178538 8 61101423 61193954 q12.1 ov20,ov88,ov94 3 RAB2A ENSG00000104388 8 61429762 61534296 q12.1 ov20,ov88,ov94 3 RLBP1L1 ENSG00000177182 8 62200525 62414202 q12.3 ov20,ov88,ov94 3 ASPH ENSG00000198363 8 62413115 62627199 q12.3 ov20,ov88,ov94 3 NKAIN3 ENSG00000185942 8 63492098 63831071 q12.3 ov20,ov88,ov94 3 GGH ENSG00000137563 8 63927643 63951610 q12.3 ov20,ov88,ov94 3 TTPA ENSG00000137561 8 63972372 63998598 q12.3 ov20,ov88,ov94 3 YTHDF3 ENSG00000185728 8 64081437 64100416 q12.3 ov20,ov88,ov94 3 IFITM8P ENSG00000215096 8 64321623 64322079 q12.3 ov20,ov88,ov94 3 BHLHE22 ENSG00000180828 8 65492814 65496181 q12.3 ov20,ov88,ov94 3 CYP7B1 ENSG00000172817 8 65508529 65711348 q12.3 ov20,ov88,ov94 3 ARMC1 ENSG00000104442 8 66515076 66546432 q13.1 ov20,ov88,ov94 3 MTFR1 ENSG00000066855 8 66556974 66622796 q13.1 ov20,ov88,ov94 3 PDE7A ENSG00000205268 8 66629905 66753755 q13.1 ov20,ov88,ov94 3 DNAJC5B ENSG00000147570 8 66933791 67012755 q13.1 ov20,ov88,ov94 3 TRIM55 ENSG00000147573 8 67039278 67087716 q13.1 ov20,ov88,ov94 3 CRH ENSG00000147571 8 67088637 67090846 q13.1 ov20,ov88,ov94 3 RRS1 ENSG00000179041 8 67341263 67342966 q13.1 ov20,ov88,ov94 3 ADHFE1 ENSG00000147576 8 67344718 67381044 q13.1 ov20,ov88,ov94 3 C8orf46 ENSG00000169085 8 67405491 67430755 q13.1 ov20,ov88,ov94 3 MYBL1 ENSG00000185697 8 67474410 67525175 q13.1 ov20,ov88,ov94 3 VCPIP1 ENSG00000175073 8 67540746 67579482 q13.1 ov20,ov88,ov94 3 C8orf44 ENSG00000213865 8 67588454 67772690 q13.1 ov20,ov88,ov94 3 SGK3 ENSG00000104205 8 67624891 67774246 q13.1 ov20,ov88,ov94 3 PTTG3 ENSG00000213005 8 67679632 67680240 q13.1 ov20,ov88,ov94 3 C8orf45 ENSG00000178460 8 67782984 67834282 q13.1 ov20,ov88,ov94 3 TCF24 ENSG00000187728 8 67873530 67873961 q13.1 ov20,ov88,ov94 3 LRRC67 ENSG00000178125 8 67876458 67940786 q13.1 ov20,ov88,ov94 3 COPS5 ENSG00000121022 8 67955317 67974562 q13.1 ov20,ov88,ov94 3 CSPP1 ENSG00000104218 8 67976603 68108494 q13.1 ov20,ov88,ov94 3 ARFGEF1 ENSG00000066777 8 68109897 68255912 q13.2 ov20,ov88,ov94 3 CPA6 ENSG00000165078 8 68334405 68658620 q13.2 ov20,ov88,ov94 3 PREX2 ENSG00000046889 8 68864353 69143897 q13.2 ov20,ov88,ov94 3 C8orf34 ENSG00000165084 8 69242957 69731256 q13.2 ov20,ov88,ov94 3 RPS15AP25 ENSG00000236191 8 69437752 69438141 q13.2 ov20,ov88,ov94 3 SULF1 ENSG00000137573 8 70378859 70573147 q13.2 ov20,ov88,ov94 3 SLCO5A1 ENSG00000137571 8 70584575 70747208 q13.3 ov20,ov88,ov94 3 PRDM14 ENSG00000147596 8 70964020 70983928 q13.3 ov20,ov88,ov94 3 NCOA2 ENSG00000140396 8 71015826 71316020 q13.3 ov20,ov88,ov94 3 TRAM1 ENSG00000067167 8 71485673 71520604 q13.3 ov20,ov88,ov94 3 LACTB2 ENSG00000147592 8 71549501 71581447 q13.3 ov20,ov88,ov94 3 XKR9 ENSG00000221947 8 71581600 71648176 q13.3 ov20,ov88,ov94 3 EYA1 ENSG00000104313 8 72109668 72274467 q13.3 ov20,ov88,ov94 3 KCNB2 ENSG00000182674 8 73479970 73850326 q13.3 ov20,ov88,ov94 3 TERF1 ENSG00000147601 8 73921097 73959987 q21.11 ov20,ov88,ov94 3 C8orf84 ENSG00000164764 8 73976780 74005507 q21.11 ov20,ov88,ov94 3 RPL7 ENSG00000147604 8 74202519 74213303 q21.11 ov20,ov88,ov94 3 RDH10 ENSG00000121039 8 74207265 74237516 q21.11 ov20,ov88,ov94 3 STAU2 ENSG00000040341 8 74332608 74659075 q21.11 ov20,ov88,ov94 3 UBE2W ENSG00000104343 8 74702842 74791110 q21.11 ov20,ov88,ov94 3 TCEB1 ENSG00000154582 8 74858634 74884346 q21.11 ov20,ov88,ov94 3 TMEM70 ENSG00000175606 8 74888430 74895011 q21.11 ov20,ov88,ov94 3 LY96 ENSG00000154589 8 74903587 74941305 q21.11 ov20,ov88,ov94 3 JPH1 ENSG00000104369 8 75146939 75233562 q21.11 ov20,ov88,ov94 3 GDAP1 ENSG00000104381 8 75262618 75279333 q21.11 ov20,ov88,ov94 3 ZFHX4 ENSG00000091656 8 77593523 77779521 q21.11 ov20,ov88,ov94 3 PXMP3 ENSG00000164751 8 77892496 77912524 q21.11 ov20,ov88,ov94 3 ZBTB10 ENSG00000205189 8 81397902 81438500 q21.13 ov78,ov88,ov94 3 ZNF704 ENSG00000164684 8 81550769 81787016 q21.13 ov78,ov88,ov94 3 PAG1 ENSG00000076641 8 81880050 82024303 q21.13 ov78,ov88,ov94 3 FABP5 ENSG00000164687 8 82192770 82197012 q21.13 ov78,ov88,ov94 3 PMP2 ENSG00000147588 8 82352566 82359719 q21.13 ov78,ov88,ov94 3 FABP9 ENSG00000205186 8 82370618 82373758 q21.13 ov78,ov88,ov94 3 FABP4 ENSG00000170323 8 82390732 82395473 q21.13 ov78,ov88,ov94 3 FABP12 ENSG00000197416 8 82437259 82443613 q21.13 ov78,ov88,ov94 3 IMPA1 ENSG00000133731 8 82569151 82598589 q21.13 ov78,ov88,ov94 3 SLC10A5 ENSG00000205184 8 82605891 82607207 q21.13 ov78,ov88,ov94 3 ZFAND1 ENSG00000104231 8 82613958 82633530 q21.13 ov78,ov88,ov94 3 CHMP4C ENSG00000164695 8 82644688 82671750 q21.13 ov78,ov88,ov94 3 SNX16 ENSG00000104497 8 82711822 82754521 q21.13 ov78,ov88,ov94 3 HNRNPA1P4 ENSG00000206228 8 83203859 83204617 q21.13 ov78,ov88,ov94 3 RALYL ENSG00000184672 8 85618162 85834076 q21.2 ov78,ov88,ov94 3 LRRCC1 ENSG00000133739 8 86019377 86058310 q21.2 ov78,ov88,ov94 3 E2F5 ENSG00000133740 8 86089619 86126751 q21.2 ov78,ov88,ov94 3 CA13 ENSG00000185015 8 86157716 86196302 q21.2 ov78,ov88,ov94 3 CA1 ENSG00000133742 8 86240458 86264013 q21.2 ov78,ov88,ov94 3 CA3 ENSG00000164879 8 86351056 86361269 q21.2 ov78,ov88,ov94 3 CA2 ENSG00000104267 8 86376131 86393721 q21.2 ov78,ov88,ov94 3 FAM92A1 ENSG00000188343 8 94712773 94740669 q22.1 ov20,ov78,ov88 3 RBM12B ENSG00000183808 8 94743733 94753224 q22.1 ov20,ov78,ov88 3 C8orf39 ENSG00000212998 8 94752349 94753001 q22.1 ov20,ov78,ov88 3 TMEM67 ENSG00000164953 8 94767072 94831462 q22.1 ov20,ov78,ov88 3 PPM2C ENSG00000164951 8 94929162 94938294 q22.1 ov20,ov78,ov88 3 CDH17 ENSG00000079112 8 95139394 95229531 q22.1 ov20,ov78,ov88 3 GEM ENSG00000164949 8 95261487 95274557 q22.1 ov20,ov78,ov88 3 RAD54B ENSG00000197275 8 95384189 95487313 q22.1 ov20,ov78,ov88 3 KIAA1429 ENSG00000164944 8 95500600 95565688 q22.1 ov20,ov78,ov88 3 DPY19L4 ENSG00000156162 8 95732103 95806076 q22.1 ov20,ov78,ov88 3 RSPO2 ENSG00000147655 8 108911544 109095913 q23.1 ov20,ov78,ov88 3 EIF3E ENSG00000104408 8 109213973 109260959 q23.1 ov20,ov78,ov88 3 TTC35 ENSG00000104412 8 109455853 109499135 q23.1 ov20,ov78,ov88 3 TMEM74 ENSG00000164841 8 109795346 109799770 q23.1 ov20,ov78,ov88 3 TRHR ENSG00000174417 8 110099724 110131813 q23.1 ov20,ov78,ov88 3 NUDCD1 ENSG00000120526 8 110253149 110346350 q23.1 ov20,ov78,ov88 3 ENY2 ENSG00000120533 8 110346570 110355898 q23.1 ov20,ov78,ov88 3 PKHD1L1 ENSG00000205038 8 110374706 110543500 q23.1 ov20,ov78,ov88 3 EBAG9 ENSG00000147654 8 110551929 110577387 q23.2 ov20,ov78,ov88 3 KCNV1 ENSG00000164794 8 110979235 110986959 q23.2 ov20,ov78,ov88 3 TRPS1 ENSG00000104447 8 116420724 116821899 q23.3 ov20,ov78,ov88 3 EIF3H ENSG00000147677 8 117657056 117768232 q24.11 ov20,ov78,ov88 3 UTP23 ENSG00000147679 8 117778742 117798816 q24.11 ov20,ov78,ov88 3 RAD21 ENSG00000164754 8 117858174 117887105 q24.11 ov20,ov78,ov88 3 C8orf85 ENSG00000205002 8 117950464 117956237 q24.11 ov20,ov78,ov88 3 SLC30A8 ENSG00000164756 8 117963218 118188953 q24.11 ov20,ov78,ov88 3 MED30 ENSG00000164758 8 118532965 118552499 q24.11 ov20,ov78,ov88 3 TNFRSF11B ENSG00000164761 8 119935797 119964383 q24.12 ov20,ov78,ov88 3 COLEC10 ENSG00000184374 8 120079446 120119195 q24.12 ov20,ov78,ov88 3 MAL2 ENSG00000147676 8 120220610 120257909 q24.12 ov20,ov78,ov88 3 CCDC26 ENSG00000229140 8 130364905 130365234 q24.21 ov20,ov78,ov88 3 GSDMC ENSG00000147697 8 130760443 130799134 q24.21 ov20,ov78,ov88 3 Supplementary Table 2 Page 7
LY6E ENSG00000160932 8 144099902 144103825 q24.3 ov11,ov20,ov88 3 C8orf31 ENSG00000177335 8 144120679 144135720 q24.3 ov11,ov20,ov88 3 LY6H ENSG00000176956 8 144239334 144242053 q24.3 ov11,ov20,ov88 3 GPIHBP1 ENSG00000182851 8 144295068 144299043 q24.3 ov11,ov20,ov88 3 ZFP41 ENSG00000181638 8 144329109 144359099 q24.3 ov11,ov20,ov88 3 ZNF696 ENSG00000185730 8 144373559 144382122 q24.3 ov11,ov20,ov88 3 TOP1MT ENSG00000184428 8 144391535 144417050 q24.3 ov11,ov20,ov88 3 METTL11A ENSG00000148335 9 132371163 132398209 q34.11 ov31,ov34,ov61 3 C9orf50 ENSG00000179058 9 132374508 132383055 q34.11 ov31,ov34,ov61 3 ASB6 ENSG00000148331 9 132396883 132404444 q34.11 ov31,ov34,ov61 3 LRP5 ENSG00000162337 11 68080108 68216739 q13.2 ov102,ov61,ov66 3 SAPS3 ENSG00000110075 11 68228199 68382797 q13.2 ov102,ov61,ov66 3 GAL ENSG00000069482 11 68451983 68458643 q13.3 ov102,ov61,ov66 3 MTL5 ENSG00000132749 11 68474908 68518988 q13.3 ov102,ov61,ov66 3 CPT1A ENSG00000110090 11 68522090 68609399 q13.3 ov102,ov61,ov66 3 MRPL21 ENSG00000197345 11 68658747 68671303 q13.3 ov102,ov61,ov66 3 IGHMBP2 ENSG00000132740 11 68671319 68708069 q13.3 ov102,ov61,ov66 3 MRGPRD ENSG00000172938 11 68747490 68748455 q13.3 ov102,ov61,ov66 3 MRGPRF ENSG00000172935 11 68771863 68780850 q13.3 ov102,ov61,ov66 3 TPCN2 ENSG00000162341 11 68816350 68858072 q13.3 ov102,ov61,ov66 3 MYEOV ENSG00000172927 11 69061622 69064753 q13.3 ov102,ov61,ov66 3 CCND1 ENSG00000110092 11 69455873 69469241 q13.3 ov102,ov61,ov66 3 ORAOV1 ENSG00000149716 11 69468073 69490165 q13.3 ov102,ov61,ov66 3 FGF19 ENSG00000162344 11 69513007 69519106 q13.3 ov102,ov61,ov66 3 FGF4 ENSG00000075388 11 69587797 69590171 q13.3 ov102,ov61,ov66 3 FGF3 ENSG00000186895 11 69624736 69634192 q13.3 ov102,ov61,ov66 3 ANO1 ENSG00000131620 11 69924664 70035633 q13.3 ov102,ov61,ov66 3 FADD ENSG00000168040 11 70049269 70053508 q13.3 ov102,ov61,ov66 3 PPFIA1 ENSG00000131626 11 70116823 70230500 q13.3 ov102,ov61,ov66 3 CTTN ENSG00000085733 11 70244612 70282689 q13.3 ov102,ov61,ov66 3 SHANK2 ENSG00000162105 11 70313961 70963623 q13.4 ov102,ov61,ov66 3 RPAP3 ENSG00000005175 12 48057075 48099774 q13.11 ov108,ov11,ov55 3 RAPGEF3 ENSG00000079337 12 48128455 48152889 q13.11 ov108,ov11,ov55 3 SLC48A1 ENSG00000211584 12 48165951 48176536 q13.11 ov108,ov11,ov55 3 HDAC7 ENSG00000061273 12 48176509 48226915 q13.11 ov108,ov11,ov55 3 VDR ENSG00000111424 12 48235322 48298814 q13.11 ov108,ov11,ov55 3 TMEM106C ENSG00000134291 12 48357330 48362660 q13.11 ov108,ov11,ov55 3 COL2A1 ENSG00000139219 12 48366748 48398285 q13.11 ov108,ov11,ov55 3 SENP1 ENSG00000079387 12 48436681 48499641 q13.11 ov108,ov11,ov55 3 PFKM ENSG00000152556 12 48501157 48539887 q13.11 ov108,ov11,ov55 3 ASB8 ENSG00000177981 12 48541574 48551377 q13.11 ov108,ov11,ov55 3 KRT1 ENSG00000167768 12 53068520 53074191 q13.13 ov108,ov11,ov14 3 KRT77 ENSG00000189182 12 53083410 53097247 q13.13 ov108,ov11,ov14 3 KRT76 ENSG00000185069 12 53161940 53171105 q13.13 ov108,ov11,ov14 3 KRT3 ENSG00000186442 12 53183470 53189892 q13.13 ov108,ov11,ov14 3 KRT4 ENSG00000170477 12 53200333 53208335 q13.13 ov108,ov11,ov14 3 KRT79 ENSG00000185640 12 53215232 53228079 q13.13 ov108,ov11,ov14 3 KRT78 ENSG00000170423 12 53232746 53242778 q13.13 ov108,ov11,ov14 3 KRT8 ENSG00000170421 12 53290971 53298868 q13.13 ov108,ov11,ov14 3 KRT18 ENSG00000111057 12 53342655 53346684 q13.13 ov108,ov11,ov14 3 EIF4B ENSG00000063046 12 53400062 53435992 q13.13 ov108,ov11,ov14 3 TENC1 ENSG00000111077 12 53440810 53458163 q13.13 ov108,ov11,ov14 3 SPRYD3 ENSG00000167778 12 53458389 53473170 q13.13 ov108,ov11,ov14 3 IGFBP6 ENSG00000167779 12 53491436 53496128 q13.13 ov108,ov11,ov14 3 SOAT2 ENSG00000167780 12 53497274 53518323 q13.13 ov108,ov11,ov14 3 CSAD ENSG00000139631 12 53551448 53574693 q13.13 ov108,ov11,ov14 3 ZNF740 ENSG00000139651 12 53574535 53584654 q13.13 ov108,ov11,ov14 3 ITGB7 ENSG00000139626 12 53585110 53601000 q13.13 ov108,ov11,ov14 3 RARG ENSG00000172819 12 53604354 53626036 q13.13 ov108,ov11,ov14 3 MFSD5 ENSG00000182544 12 53645437 53648188 q13.13 ov108,ov11,ov14 3 ESPL1 ENSG00000135476 12 53662083 53687427 q13.13 ov108,ov11,ov14 3 PFDN5 ENSG00000123349 12 53689235 53693230 q13.13 ov108,ov11,ov14 3 C12orf10 ENSG00000139637 12 53693470 53700965 q13.13 ov108,ov11,ov14 3 AAAS ENSG00000094914 12 53701241 53715412 q13.13 ov108,ov11,ov14 3 SP7 ENSG00000170374 12 53720362 53729537 q13.13 ov108,ov11,ov14 3 HOXC4 ENSG00000198353 12 54410642 54449814 q13.13 ov11,ov14,ov59 3 HOXC6 ENSG00000197757 12 54410642 54424607 q13.13 ov11,ov14,ov59 3 HOXC5 ENSG00000172789 12 54426832 54429145 q13.13 ov11,ov14,ov59 3 SMUG1 ENSG00000123415 12 54575252 54582757 q13.13 ov11,ov14,ov59 3 CBX5 ENSG00000094916 12 54624733 54673915 q13.13 ov11,ov14,ov59 3 HNRNPA1 ENSG00000135486 12 54674488 54679028 q13.13 ov11,ov14,ov59 3 NFE2 ENSG00000123405 12 54685900 54694791 q13.13 ov11,ov14,ov59 3 COPZ1 ENSG00000111481 12 54718911 54745633 q13.13 ov11,ov14,ov59 3 GPR84 ENSG00000139572 12 54756231 54758268 q13.13 ov11,ov14,ov59 3 ZNF385A ENSG00000161642 12 54762920 54785083 q13.13 ov11,ov14,ov59 3 ITGA5 ENSG00000161638 12 54789047 54813050 q13.13 ov11,ov14,ov59 3 GTSF1 ENSG00000170627 12 54849738 54867386 q13.13 ov11,ov14,ov59 3 NCKAP1L ENSG00000123338 12 54891495 54936898 q13.13 ov11,ov14,ov59 3 PDE1B ENSG00000123360 12 54943404 54973023 q13.2 ov11,ov14,ov59 3 PPP1R1A ENSG00000135447 12 54971172 54982443 q13.2 ov11,ov14,ov59 3 GLYCAM1 ENSG00000223520 12 55001971 55004246 q13.2 ov11,ov14,ov59 3 LACRT ENSG00000135413 12 55024597 55028679 q13.2 ov11,ov14,ov59 3 DCD ENSG00000161634 12 55038432 55042277 q13.2 ov11,ov14,ov59 3 OR11H2 ENSG00000186445 14 20181063 20182491 q11.2 ov14,ov33,ov40 3 OR4Q3 ENSG00000182652 14 20215587 20216528 q11.2 ov14,ov33,ov40 3 USP10 ENSG00000103194 16 84733555 84813525 q24.1 ov3,ov61,ov80 3 CRISPLD2 ENSG00000103196 16 84853584 84943116 q24.1 ov3,ov61,ov80 3 ZDHHC7 ENSG00000153786 16 85008069 85045141 q24.1 ov3,ov61,ov80 3 KIAA0513 ENSG00000135709 16 85061410 85127826 q24.1 ov3,ov61,ov80 3 FAM92B ENSG00000153789 16 85131965 85146114 q24.1 ov3,ov61,ov80 3 KIAA0182 ENSG00000131149 16 85645023 85709812 q24.1 ov61,ov78,ov80 3 GINS2 ENSG00000131153 16 85711281 85722588 q24.1 ov61,ov78,ov80 3 C16orf74 ENSG00000154102 16 85741123 85784689 q24.1 ov61,ov78,ov80 3 FOXF1 ENSG00000103241 16 86544133 86548069 q24.1 ov56,ov61,ov78 3 MTHFSD ENSG00000103248 16 86563783 86588841 q24.1 ov56,ov61,ov78 3 FOXC2 ENSG00000176692 16 86600857 86602539 q24.1 ov56,ov61,ov78 3 FOXL1 ENSG00000176678 16 86612115 86615303 q24.1 ov56,ov61,ov78 3 FBXO31 ENSG00000103264 16 87362944 87417394 q24.2 ov56,ov61,ov80 3 MAP1LC3B ENSG00000140941 16 87425801 87438369 q24.2 ov56,ov61,ov80 3 ZCCHC14 ENSG00000140948 16 87439877 87525460 q24.2 ov56,ov61,ov80 3 JPH3 ENSG00000154118 16 87636499 87731762 q24.2 ov56,ov61,ov80 3 KLHDC4 ENSG00000104731 16 87741419 87799555 q24.2 ov56,ov61,ov80 3 SLC7A5 ENSG00000103257 16 87863630 87903114 q24.2 ov56,ov61,ov80 3 CA5A ENSG00000174990 16 87921625 87970112 q24.2 ov56,ov61,ov80 3 BANP ENSG00000172530 16 87984042 88110924 q24.2 ov56,ov61,ov80 3 ZNF469 ENSG00000225614 16 88493879 88507165 q24.2 ov56,ov61,ov80 3 ZFPM1 ENSG00000179588 16 88519725 88601389 q24.2 ov56,ov61,ov80 3 C16orf85 ENSG00000205036 16 88620112 88636548 q24.2 ov56,ov61,ov80 3 ZC3H18 ENSG00000158545 16 88636842 88698255 q24.2 ov56,ov61,ov80 3 IL17C ENSG00000124391 16 88705001 88706884 q24.3 ov56,ov61,ov80 3 CYBA ENSG00000051523 16 88709698 88717457 q24.3 ov56,ov61,ov80 3 MVD ENSG00000167508 16 88718348 88729518 q24.3 ov56,ov61,ov80 3 SNAI3 ENSG00000185669 16 88744090 88752882 q24.3 ov56,ov61,ov80 3 RNF166 ENSG00000158717 16 88762910 88772811 q24.3 ov56,ov61,ov80 3 C16orf84 ENSG00000174177 16 88772891 88781784 q24.3 ov56,ov61,ov80 3 FAM38A ENSG00000103335 16 88775415 88804191 q24.3 ov56,ov61,ov80 3 CDT1 ENSG00000167513 16 88870186 88875665 q24.3 ov56,ov61,ov80 3 APRT ENSG00000198931 16 88875877 88878342 q24.3 ov56,ov61,ov80 3 GALNS ENSG00000141012 16 88880143 88923374 q24.3 ov56,ov61,ov80 3 TRAPPC2L ENSG00000167515 16 88923506 88927519 q24.3 ov56,ov61,ov80 3 CBFA2T3 ENSG00000129993 16 88941267 89043401 q24.3 ov56,ov61,ov80 3 WSB1 ENSG00000109046 17 25621106 25640645 q11.1 ov48,ov58,ov61 3 KSR1 ENSG00000141068 17 25799036 25953461 q11.2 ov48,ov58,ov61 3 LGALS9 ENSG00000168961 17 25956824 25976579 q11.2 ov48,ov58,ov61 3 NOS2 ENSG00000007171 17 26083792 26127555 q11.2 ov48,ov58,ov61 3 NLK ENSG00000087095 17 26369182 26523402 q11.2 ov48,ov58,ov61 3 PPY2 ENSG00000126657 17 26574470 26575315 q11.2 ov48,ov58,ov61 3 TMEM97 ENSG00000109084 17 26646121 26655710 q11.2 ov48,ov58,ov61 3 IFT20 ENSG00000109083 17 26655353 26662495 q11.2 ov48,ov58,ov61 3 TNFAIP1 ENSG00000109079 17 26662786 26674033 q11.2 ov48,ov58,ov61 3 POLDIP2 ENSG00000004142 17 26673659 26684473 q11.2 ov48,ov58,ov61 3 SARM1 ENSG00000004139 17 26684687 26728046 q11.2 ov48,ov58,ov61 3 VTN ENSG00000109072 17 26691290 26697373 q11.2 ov48,ov58,ov61 3 SLC46A1 ENSG00000076351 17 26721661 26733228 q11.2 ov48,ov58,ov61 3 SLC13A2 ENSG00000007216 17 26800664 26824387 q11.2 ov48,ov58,ov61 3 FOXN1 ENSG00000109101 17 26850959 26865175 q11.2 ov48,ov58,ov61 3 UNC119 ENSG00000109103 17 26873725 26879646 q11.2 ov48,ov58,ov61 3 ERAL1 ENSG00000132591 17 27182034 27188078 q11.2 ov48,ov61,ov93 3 FLOT2 ENSG00000132589 17 27206353 27224715 q11.2 ov48,ov61,ov93 3 DHRS13 ENSG00000167536 17 27224799 27230089 q11.2 ov48,ov61,ov93 3 PHF12 ENSG00000109118 17 27232291 27278508 q11.2 ov48,ov61,ov93 3 SEZ6 ENSG00000063015 17 27281949 27333081 q11.2 ov48,ov61,ov93 3 PIPOX ENSG00000179761 17 27369918 27384236 q11.2 ov48,ov61,ov93 3 TIAF1 ENSG00000221995 17 27400870 27401217 q11.2 ov48,ov61,ov93 3 MYO18A ENSG00000196535 17 27401498 27493958 q11.2 ov48,ov61,ov93 3 SPACA3 ENSG00000141316 17 31318882 31324895 q11.2 ov102,ov33,ov61 3 CCL16 ENSG00000161573 17 34303538 34308532 q12 ov61,ov80,ov93 3 CCL14 ENSG00000213494 17 34310692 34313764 q12 ov61,ov80,ov93 3 CCL15 ENSG00000161574 17 34310692 34329100 q12 ov61,ov80,ov93 3 CCL23 ENSG00000167236 17 34340097 34345005 q12 ov61,ov80,ov93 3 CCL18 ENSG00000006074 17 34391643 34398840 q12 ov61,ov80,ov93 3 CCL3 ENSG00000006075 17 34415605 34417506 q12 ov61,ov80,ov93 3 CCL4 ENSG00000129277 17 34431220 34433665 q12 ov61,ov80,ov93 3 TBC1D3F ENSG00000224226 17 34492877 34503995 q12 ov61,ov80,ov93 3 CCL3L1 ENSG00000205021 17 34522271 34625748 q12 ov61,ov80,ov93 3 CCL4L1 ENSG00000205020 17 34538310 34540048 q12 ov61,ov80,ov93 3 TBC1D3C ENSG00000234972 17 34580902 34757050 q12 ov61,ov80,ov93 3 CCL4L2 ENSG00000197262 17 34639876 34641846 q12 ov61,ov80,ov93 3 DHRS11 ENSG00000108272 17 34948226 34957211 q12 ov108,ov48,ov61 3 MRM1 ENSG00000129282 17 34958001 34965397 q12 ov108,ov48,ov61 3 C17orf78 ENSG00000167230 17 35732985 35749660 q12 ov108,ov58,ov61 3 TADA2L ENSG00000108264 17 35766965 35837596 q12 ov108,ov58,ov61 3 DUSP14 ENSG00000161326 17 35849937 35873603 q12 ov108,ov58,ov61 3 AP1GBP1 ENSG00000006114 17 35877940 35969520 q12 ov108,ov58,ov61 3 DDX52 ENSG00000141141 17 35972413 36003487 q12 ov108,ov58,ov61 3 HNF1B ENSG00000108753 17 36046435 36105096 q12 ov108,ov58,ov61 3 TBC1D3 ENSG00000185128 17 36283960 36295098 q12 ov108,ov61,ov80 3 TBC1D3E ENSG00000197681 17 36337528 36348666 q12 ov108,ov61,ov80 3 C17orf96 ENSG00000179294 17 36827961 36831187 q12 ov108,ov33,ov61 3 MLLT6 ENSG00000108292 17 36861873 36886031 q12 ov108,ov33,ov61 3 CISD3 ENSG00000230055 17 36886510 36891858 q12 ov108,ov33,ov61 3 CDC6 ENSG00000094804 17 38444146 38459413 q21.2 ov33,ov58,ov61 3 RARA ENSG00000131759 17 38465446 38513895 q21.2 ov33,ov58,ov61 3 GJD3 ENSG00000183153 17 38517235 38520067 q21.2 ov33,ov58,ov61 3 TOP2A ENSG00000131747 17 38544768 38574408 q21.2 ov33,ov58,ov61 3 IGFBP4 ENSG00000141753 17 38599676 38613981 q21.2 ov33,ov58,ov61 3 TNS4 ENSG00000131746 17 38632080 38657854 q21.2 ov33,ov58,ov61 3 CCR7 ENSG00000126353 17 38710024 38721724 q21.2 ov33,ov58,ov61 3 SMARCE1 ENSG00000073584 17 38783985 38804760 q21.2 ov33,ov58,ov61 3 KRT222P ENSG00000213424 17 38810917 38821416 q21.2 ov33,ov58,ov61 3 KRT24 ENSG00000167916 17 38854245 38860002 q21.2 ov33,ov58,ov61 3 KRT25 ENSG00000204897 17 38904272 38911584 q21.2 ov33,ov58,ov61 3 KRT26 ENSG00000186393 17 38922492 38928411 q21.2 ov33,ov58,ov61 3 KRT27 ENSG00000171446 17 38933060 38938786 q21.2 ov33,ov58,ov61 3 KRT28 ENSG00000173908 17 38948448 38956211 q21.2 ov33,ov58,ov61 3 KRT10 ENSG00000186395 17 38974370 38978863 q21.2 ov33,ov58,ov61 3 TMEM99 ENSG00000167920 17 38975358 38992526 q21.2 ov33,ov58,ov61 3 KRT12 ENSG00000187242 17 39017430 39023462 q21.2 ov33,ov58,ov61 3 KRT20 ENSG00000171431 17 39032195 39041479 q21.2 ov33,ov58,ov61 3 KRT23 ENSG00000108244 17 39078949 39093836 q21.2 ov33,ov58,ov61 3 KRT39 ENSG00000196859 17 39114669 39123144 q21.2 ov33,ov58,ov61 3 KRT40 ENSG00000204889 17 39133968 39142626 q21.2 ov33,ov58,ov61 3 KRTAP3-3 ENSG00000212899 17 39149686 39150385 q21.2 ov33,ov58,ov61 3 KRTAP3-2 ENSG00000212900 17 39155447 39156138 q21.2 ov33,ov58,ov61 3 KRTAP3-1 ENSG00000212901 17 39164776 39165366 q21.2 ov33,ov58,ov61 3 KRTAP1-5 ENSG00000221852 17 39182278 39183454 q21.2 ov33,ov58,ov61 3 KRTAP1-4 ENSG00000204887 17 39185929 39186377 q21.2 ov33,ov58,ov61 3 KRTAP1-3 ENSG00000221880 17 39190136 39191107 q21.2 ov33,ov58,ov61 3 KRTAP1-1 ENSG00000188581 17 39196811 39197713 q21.2 ov33,ov58,ov61 3 KRTAP2-2 ENSG00000214518 17 39210750 39211482 q21.2 ov33,ov58,ov61 3 KRTAP2-1 ENSG00000212724 17 39215492 39216366 q21.2 ov33,ov58,ov61 3 KRTAP2-4 ENSG00000213417 17 39221368 39222131 q21.2 ov33,ov58,ov61 3 KRTAP4-9 ENSG00000212722 17 39240402 39262740 q21.2 ov33,ov58,ov61 3 KRTAP4-8 ENSG00000204880 17 39253233 39258461 q21.2 ov33,ov58,ov61 3 KRTAP4-11 ENSG00000212721 17 39273433 39274612 q21.2 ov33,ov58,ov61 3 KRTAP4-12 ENSG00000213416 17 39279343 39280419 q21.2 ov33,ov58,ov61 3 ACSF2 ENSG00000167107 17 48503519 48552200 q21.33 ov44,ov58,ov61 3 CHAD ENSG00000136457 17 48541854 48546227 q21.33 ov44,ov58,ov61 3 RSAD1 ENSG00000136444 17 48556190 48563336 q21.33 ov44,ov58,ov61 3 MRPS23 ENSG00000181610 17 55916848 55927408 q22 ov108,ov61,ov99 3 CUEDC1 ENSG00000180891 17 55940337 56032684 q22 ov108,ov61,ov99 3 VEZF1 ENSG00000136451 17 56048910 56065615 q22 ov108,ov61,ov99 3 DHX40 ENSG00000108406 17 57642886 57685702 q23.1 ov58,ov61,ov99 3 CLTC ENSG00000141367 17 57697050 57774317 q23.1 ov58,ov61,ov99 3 PTRH2 ENSG00000141378 17 57774668 57784856 q23.1 ov58,ov61,ov99 3 TMEM49 ENSG00000062716 17 57784863 57917950 q23.1 ov58,ov61,ov99 3 RPS6KB1 ENSG00000108443 17 57970443 58027782 q23.1 ov108,ov58,ov61 3 RNFT1 ENSG00000189050 17 58029724 58042117 q23.1 ov108,ov58,ov61 3 HEATR6 ENSG00000068097 17 58120562 58156292 q23.1 ov108,ov58,ov61 3 CA4 ENSG00000167434 17 58227297 58236901 q23.1 ov108,ov58,ov61 3 USP32 ENSG00000170832 17 58254691 58469586 q23.2 ov108,ov58,ov61 3 C17orf64 ENSG00000141371 17 58469927 58508786 q23.2 ov108,ov58,ov61 3 APPBP2 ENSG00000062725 17 58520520 58603580 q23.2 ov108,ov58,ov61 3 PPM1D ENSG00000170836 17 58677554 58742036 q23.2 ov108,ov58,ov61 3 BCAS3 ENSG00000141376 17 58755216 59470191 q23.2 ov108,ov58,ov61 3 TBX2 ENSG00000121068 17 59477257 59486827 q23.2 ov108,ov58,ov61 3 C17orf82 ENSG00000187013 17 59489112 59490641 q23.2 ov108,ov58,ov61 3 TBX4 ENSG00000121075 17 59533807 59561664 q23.2 ov108,ov58,ov61 3 POLG2 ENSG00000136480 17 62473904 62493169 q23.3 ov108,ov61,ov65 3 DDX5 ENSG00000108654 17 62495740 62502407 q23.3 ov108,ov61,ov65 3 CCDC45 ENSG00000141325 17 62503114 62534060 q23.3 ov108,ov61,ov65 3 SMURF2 ENSG00000108854 17 62540735 62658386 q24.1 ov108,ov61,ov65 3 GNA13 ENSG00000120063 17 63005407 63052920 q24.1 ov108,ov58,ov61 3 RGS9 ENSG00000108370 17 63133549 63223819 q24.1 ov108,ov58,ov61 3 CCDC46 ENSG00000154240 17 63631659 64187987 q24.1 ov108,ov61,ov99 3 APOH ENSG00000091583 17 64208148 64225556 q24.2 ov108,ov61,ov99 3 PRKCA ENSG00000154229 17 64298926 64806862 q24.2 ov108,ov61,ov99 3 CACNG5 ENSG00000075429 17 64873391 64881395 q24.2 ov108,ov61,ov99 3 CACNG4 ENSG00000075461 17 64961013 65029518 q24.2 ov108,ov61,ov99 3 CACNG1 ENSG00000108878 17 65040706 65052913 q24.2 ov108,ov61,ov99 3 HELZ ENSG00000198265 17 65066555 65241319 q24.2 ov108,ov61,ov99 3 ARSG ENSG00000141337 17 66255323 66418872 q24.2 ov108,ov61,ov99 3 WIPI1 ENSG00000070540 17 66417423 66453653 q24.2 ov108,ov61,ov99 3 PRKAR1A ENSG00000108946 17 66508110 66528908 q24.2 ov108,ov61,ov99 3 FAM20A ENSG00000108950 17 66533012 66597530 q24.2 ov108,ov61,ov99 3 MAP2K6 ENSG00000108984 17 67410838 67538451 q24.3 ov108,ov61,ov99 3 KCNJ16 ENSG00000153822 17 68071426 68131744 q24.3 ov108,ov61,ov99 3 KCNJ2 ENSG00000123700 17 68165676 68176160 q24.3 ov108,ov61,ov99 3 SSTR2 ENSG00000180616 17 71161160 71168060 q25.1 ov108,ov58,ov61 3 COG1 ENSG00000166685 17 71189173 71204646 q25.1 ov108,ov58,ov61 3 FAM104A ENSG00000133193 17 71203493 71228533 q25.1 ov108,ov58,ov61 3 C17orf80 ENSG00000141219 17 71228776 71245091 q25.1 ov108,ov58,ov61 3 CPSF4L ENSG00000187959 17 71244588 71258491 q25.1 ov108,ov58,ov61 3 CDC42EP4 ENSG00000179604 17 71279764 71308143 q25.1 ov108,ov58,ov61 3 RPL38 ENSG00000172809 17 72199795 72206008 q25.1 ov108,ov61,ov77 3 TTYH2 ENSG00000141540 17 72209696 72258155 q25.1 ov108,ov61,ov77 3 DNAI2 ENSG00000171595 17 72270397 72311022 q25.1 ov108,ov61,ov77 3 KIF19 ENSG00000196169 17 72321951 72371096 q25.1 ov108,ov61,ov77 3 Supplementary Table 2 Page 8
BTBD17 ENSG00000204347 17 72352555 72357958 q25.1 ov108,ov61,ov77 3 GPRC5C ENSG00000170412 17 72427052 72446719 q25.1 ov108,ov61,ov77 3 CD300A ENSG00000167851 17 72462522 72480927 q25.1 ov108,ov61,ov77 3 CD300LB ENSG00000178789 17 72517313 72527613 q25.1 ov108,ov61,ov77 3 CD300C ENSG00000167850 17 72537247 72542282 q25.1 ov108,ov61,ov77 3 CD300LD ENSG00000204345 17 72575504 72588422 q25.1 ov108,ov61,ov77 3 C17orf77 ENSG00000182352 17 72581057 72590348 q25.1 ov108,ov61,ov77 3 ASPSCR1 ENSG00000169696 17 79935426 79975280 q25.3 ov33,ov58,ov61 3 STRA13 ENSG00000169689 17 79976580 79980773 q25.3 ov33,ov58,ov61 3 LRRC45 ENSG00000169683 17 79981280 79989024 q25.3 ov33,ov58,ov61 3 RAC3 ENSG00000169750 17 79989532 79992077 q25.3 ov33,ov58,ov61 3 DCXR ENSG00000169738 17 79993757 79995573 q25.3 ov33,ov58,ov61 3 RFNG ENSG00000169733 17 80005778 80009650 q25.3 ov33,ov58,ov61 3 GPS1 ENSG00000169727 17 80009763 80015346 q25.3 ov33,ov58,ov61 3 DUS1L ENSG00000169718 17 80015754 80023680 q25.3 ov33,ov58,ov61 3 FASN ENSG00000169710 17 80036215 80056106 q25.3 ov33,ov58,ov61 3 CCDC57 ENSG00000176155 17 80059346 80170689 q25.3 ov33,ov58,ov61 3 SLC16A3 ENSG00000141526 17 80186293 80197369 q25.3 ov33,ov58,ov61 3 CSNK1D ENSG00000141551 17 80202246 80231573 q25.3 ov33,ov58,ov61 3 CD7 ENSG00000173762 17 80272746 80275480 q25.3 ov33,ov58,ov61 3 SECTM1 ENSG00000141574 17 80278900 80291921 q25.3 ov33,ov58,ov61 3 TEX19 ENSG00000182459 17 80317122 80321645 q25.3 ov33,ov58,ov61 3 UTS2R ENSG00000181408 17 80332153 80333462 q25.3 ov33,ov58,ov61 3 C17orf101 ENSG00000181396 17 80350100 80376462 q25.3 ov33,ov58,ov61 3 HEXDC ENSG00000169660 17 80376252 80400515 q25.3 ov33,ov58,ov61 3 C17orf62 ENSG00000178927 17 80400520 80408694 q25.3 ov33,ov58,ov61 3 NARF ENSG00000141562 17 80416060 80446141 q25.3 ov33,ov58,ov61 3 FOXK2 ENSG00000141568 17 80477594 80562483 q25.3 ov33,ov58,ov61 3 WDR45L ENSG00000141580 17 80572440 80606411 q25.3 ov33,ov58,ov61 3 RAB40B ENSG00000141542 17 80614977 80656554 q25.3 ov33,ov58,ov61 3 FN3KRP ENSG00000141560 17 80674582 80685892 q25.3 ov33,ov58,ov61 3 FN3K ENSG00000167363 17 80693452 80709073 q25.3 ov33,ov58,ov61 3 TBCD ENSG00000141556 17 80709940 80901056 q25.3 ov33,ov58,ov61 3 ZNF750 ENSG00000141579 17 80787311 80797931 q25.3 ov33,ov58,ov61 3 B3GNTL1 ENSG00000175711 17 80901672 81009686 q25.3 ov33,ov58,ov61 3 NPC1 ENSG00000141458 18 21111465 21166470 q11.2 ov11,ov58,ov99 3 ANKRD29 ENSG00000154065 18 21179980 21242851 q11.2 ov11,ov58,ov99 3 LAMA3 ENSG00000053747 18 21269562 21535027 q11.2 ov11,ov58,ov99 3 TTC39C ENSG00000168234 18 21572737 21715573 q11.2 ov11,ov58,ov99 3 DIRAS1 ENSG00000176490 19 2714566 2721390 p13.3 ov102,ov58,ov61 3 SLC39A3 ENSG00000141873 19 2732525 2740074 p13.3 ov102,ov58,ov61 3 SGTA ENSG00000104969 19 2754712 2783354 p13.3 ov102,ov58,ov61 3 THOP1 ENSG00000172009 19 2785506 2813588 p13.3 ov102,ov58,ov61 3 ZNF554 ENSG00000172006 19 2819872 2836733 p13.3 ov102,ov58,ov61 3 ZNF555 ENSG00000186300 19 2841473 2857682 p13.3 ov102,ov58,ov61 3 ZNF556 ENSG00000172000 19 2867333 2878501 p13.3 ov102,ov58,ov61 3 ZNF77 ENSG00000175691 19 2896754 2944969 p13.3 ov102,ov58,ov61 3 ZNF57 ENSG00000171970 19 2900896 2918465 p13.3 ov102,ov58,ov61 3 TLE6 ENSG00000104953 19 2976853 2995182 p13.3 ov102,ov58,ov61 3 AES ENSG00000104964 19 3052908 3062964 p13.3 ov102,ov58,ov61 3 GNA11 ENSG00000088256 19 3094408 3121452 p13.3 ov102,ov58,ov61 3 GNA15 ENSG00000060558 19 3136191 3163766 p13.3 ov102,ov58,ov61 3 S1PR4 ENSG00000125910 19 3178766 3180329 p13.3 ov102,ov58,ov61 3 NCLN ENSG00000125912 19 3185875 3209572 p13.3 ov102,ov58,ov61 3 BRUNOL5 ENSG00000161082 19 3224701 3297071 p13.3 ov102,ov58,ov61 3 NFIC ENSG00000141905 19 3359616 3463603 p13.3 ov102,ov58,ov61 3 ATCAY ENSG00000167654 19 3880618 3928076 p13.3 ov102,ov58,ov61 3 ITGB1BP3 ENSG00000077009 19 3933101 3942412 p13.3 ov102,ov58,ov61 3 DAPK3 ENSG00000167657 19 3958452 3969826 p13.3 ov102,ov58,ov61 3 EEF2 ENSG00000167658 19 3976055 3985461 p13.3 ov102,ov58,ov61 3 PIAS4 ENSG00000105229 19 4007748 4039383 p13.3 ov102,ov58,ov61 3 ZBTB7A ENSG00000178951 19 4045217 4066816 p13.3 ov102,ov58,ov61 3 MAP2K2 ENSG00000126934 19 4090319 4124126 p13.3 ov102,ov58,ov61 3 CREB3L3 ENSG00000060566 19 4153629 4173050 p13.3 ov102,ov58,ov61 3 SIRT6 ENSG00000077463 19 4174106 4182596 p13.3 ov102,ov58,ov61 3 ANKRD24 ENSG00000089847 19 4186267 4224811 p13.3 ov102,ov58,ov61 3 EBI3 ENSG00000105246 19 4229495 4237515 p13.3 ov102,ov58,ov61 3 CCDC94 ENSG00000105248 19 4247108 4269083 p13.3 ov102,ov58,ov61 3 SHD ENSG00000105251 19 4278598 4290721 p13.3 ov102,ov58,ov61 3 TMIGD2 ENSG00000167664 19 4292237 4302428 p13.3 ov102,ov58,ov61 3 FSD1 ENSG00000105255 19 4304668 4323833 p13.3 ov102,ov58,ov61 3 STAP2 ENSG00000178078 19 4324041 4338847 p13.3 ov102,ov58,ov61 3 MPND ENSG00000008382 19 4343556 4360074 p13.3 ov102,ov58,ov61 3 SH3GL1 ENSG00000141985 19 4360370 4400496 p13.3 ov102,ov58,ov61 3 CHAF1A ENSG00000167670 19 4402660 4443394 p13.3 ov102,ov58,ov61 3 UBXN6 ENSG00000167671 19 4445009 4457694 p13.3 ov102,ov58,ov61 3 KIAA1881 ENSG00000167676 19 4502192 4517716 p13.3 ov102,ov58,ov61 3 LRG1 ENSG00000171236 19 4537227 4540036 p13.3 ov102,ov58,ov61 3 SEMA6B ENSG00000167680 19 4542600 4558507 p13.3 ov102,ov58,ov61 3 TNFAIP8L1 ENSG00000185361 19 4639530 4653952 p13.3 ov102,ov58,ov61 3 C19orf10 ENSG00000074842 19 4657566 4670415 p13.3 ov102,ov58,ov61 3 FEM1A ENSG00000141965 19 4791728 4795571 p13.3 ov102,ov58,ov61 3 TICAM1 ENSG00000127666 19 4815939 4831737 p13.3 ov102,ov58,ov61 3 M6PRBP1 ENSG00000105355 19 4838346 4867676 p13.3 ov102,ov58,ov61 3 ARRDC5 ENSG00000205784 19 4890449 4902879 p13.3 ov102,ov58,ov61 3 C19orf31 ENSG00000234987 19 4909216 4909767 p13.3 ov102,ov58,ov61 3 KDM4B ENSG00000127663 19 4969124 5153606 p13.3 ov102,ov58,ov61 3 UQCRFS1 ENSG00000169021 19 29698167 29704136 q12 ov40,ov45,ov55 3 VSTM2B ENSG00000187135 19 30017491 30054841 q12 ov40,ov45,ov55 3 POP4 ENSG00000105171 19 30097201 30106706 q12 ov40,ov45,ov55 3 PLEKHF1 ENSG00000166289 19 30155963 30166364 q12 ov40,ov45,ov55 3 C19orf12 ENSG00000131943 19 30189794 30206452 q12 ov40,ov45,ov55 3 CCNE1 ENSG00000105173 19 30302901 30315216 q12 ov40,ov45,ov55 3 C19orf2 ENSG00000105176 19 30433158 30506611 q12 ov40,ov45,ov55 3 ZNF536 ENSG00000198597 19 30863328 31048965 q12 ov40,ov45,ov55 3 PEPD ENSG00000124299 19 33877865 34012801 q13.11 ov11,ov40,ov55 3 CHST8 ENSG00000124302 19 34112861 34264413 q13.11 ov11,ov40,ov55 3 KCTD15 ENSG00000153885 19 34287751 34306668 q13.11 ov11,ov40,ov55 3 PDCD2L ENSG00000126249 19 34895303 34917070 q13.11 ov11,ov40,ov55 3 UBA2 ENSG00000126261 19 34919268 34960795 q13.11 ov11,ov40,ov55 3 WTIP ENSG00000142279 19 34971874 34992085 q13.11 ov11,ov40,ov55 3 SCGBL ENSG00000205209 19 35084347 35087501 q13.11 ov11,ov40,ov55 3 ZNF181 ENSG00000197841 19 35225093 35233774 q13.11 ov11,ov40,ov55 3 ZNF599 ENSG00000153896 19 35248979 35270385 q13.11 ov11,ov40,ov55 3 ZNF30 ENSG00000168661 19 35417807 35436074 q13.11 ov11,ov40,ov55 3 ZNF792 ENSG00000180884 19 35447258 35454953 q13.11 ov11,ov40,ov55 3 GRAMD1A ENSG00000089351 19 35486927 35517373 q13.11 ov11,ov40,ov55 3 SCN1B ENSG00000105711 19 35521534 35531352 q13.12 ov11,ov40,ov55 3 HPN ENSG00000105707 19 35531410 35557475 q13.12 ov11,ov40,ov55 3 FXYD3 ENSG00000089356 19 35607166 35615227 q13.12 ov11,ov40,ov55 3 LGI4 ENSG00000153902 19 35615417 35626178 q13.12 ov11,ov40,ov55 3 FXYD1 ENSG00000221857 19 35629728 35634013 q13.12 ov11,ov40,ov55 3 FXYD7 ENSG00000221946 19 35634154 35645205 q13.12 ov11,ov40,ov55 3 FXYD5 ENSG00000089327 19 35645627 35660785 q13.12 ov11,ov40,ov55 3 FAM187B ENSG00000177558 19 35715706 35719632 q13.12 ov11,ov40,ov55 3 LSR ENSG00000105699 19 35739559 35758865 q13.12 ov11,ov40,ov55 3 USF2 ENSG00000105698 19 35759896 35770718 q13.12 ov11,ov40,ov55 3 HAMP ENSG00000105697 19 35773410 35776046 q13.12 ov11,ov40,ov55 3 MAG ENSG00000105695 19 35783028 35804707 q13.12 ov11,ov40,ov55 3 CD22 ENSG00000012124 19 35820079 35838262 q13.12 ov11,ov40,ov55 3 FFAR1 ENSG00000126266 19 35842455 35843357 q13.12 ov11,ov40,ov55 3 FFAR3 ENSG00000185897 19 35849488 35851387 q13.12 ov11,ov40,ov55 3 FFAR2 ENSG00000126262 19 35940617 35941609 q13.12 ov11,ov40,ov55 3 KRTDAP ENSG00000188508 19 35978228 35981356 q13.12 ov11,ov40,ov55 3 DMKN ENSG00000161249 19 35988122 36004560 q13.12 ov11,ov40,ov55 3 GAPDHS ENSG00000105679 19 36024314 36036221 q13.12 ov11,ov40,ov55 3 TMEM147 ENSG00000105677 19 36036532 36038428 q13.12 ov11,ov40,ov55 3 ATP4A ENSG00000105675 19 36041096 36054560 q13.12 ov11,ov40,ov55 3 HAUS5 ENSG00000089336 19 36103646 36116251 q13.12 ov11,ov40,ov55 3 RBM42 ENSG00000126254 19 36119980 36128586 q13.12 ov11,ov40,ov55 3 ETV2 ENSG00000105672 19 36132647 36135773 q13.12 ov11,ov40,ov55 3 COX6B1 ENSG00000126267 19 36139155 36149683 q13.12 ov11,ov40,ov55 3 UPK1A ENSG00000105668 19 36157715 36169367 q13.12 ov11,ov40,ov55 3 ZBTB32 ENSG00000011590 19 36195429 36207940 q13.12 ov11,ov40,ov55 3 TMEM149 ENSG00000126246 19 36230153 36233351 q13.12 ov11,ov40,ov55 3 U2AF1L4 ENSG00000161265 19 36233430 36236336 q13.12 ov11,ov40,ov55 3 PSENEN ENSG00000205155 19 36236494 36237903 q13.12 ov11,ov40,ov55 3 LIN37 ENSG00000188223 19 36239499 36245417 q13.12 ov11,ov40,ov55 3 HSPB6 ENSG00000004776 19 36245496 36247959 q13.12 ov11,ov40,ov55 3 C19orf55 ENSG00000167595 19 36249044 36260077 q13.12 ov11,ov40,ov55 3 SNX26 ENSG00000004777 19 36266476 36279724 q13.12 ov11,ov40,ov55 3 PRODH2 ENSG00000161270 19 36290892 36342739 q13.12 ov11,ov40,ov55 3 KIRREL2 ENSG00000126259 19 36347810 36358048 q13.12 ov11,ov40,ov55 3 APLP1 ENSG00000105290 19 36359401 36370699 q13.12 ov11,ov40,ov55 3 NFKBID ENSG00000167604 19 36379143 36393185 q13.12 ov11,ov40,ov55 3 HCST ENSG00000126264 19 36393382 36395175 q13.12 ov11,ov40,ov55 3 TYROBP ENSG00000011600 19 36395312 36399186 q13.12 ov11,ov40,ov55 3 LRFN3 ENSG00000126243 19 36427750 36436084 q13.12 ov11,ov40,ov55 3 C19orf46 ENSG00000181392 19 36494002 36505141 q13.12 ov11,ov40,ov55 3 CLIP3 ENSG00000105270 19 36505562 36523795 q13.12 ov11,ov40,ov55 3 THAP8 ENSG00000161277 19 36525887 36545664 q13.12 ov11,ov40,ov55 3 WDR62 ENSG00000075702 19 36545783 36596012 q13.12 ov11,ov40,ov55 3 POLR2I ENSG00000105258 19 36604612 36606206 q13.12 ov11,ov40,ov55 3 TBCB ENSG00000105254 19 36605888 36616849 q13.12 ov11,ov40,ov55 3 CAPNS1 ENSG00000126247 19 36630918 36641254 q13.12 ov11,ov40,ov55 3 COX7A1 ENSG00000161281 19 36641824 36643771 q13.12 ov11,ov40,ov55 3 ZNF565 ENSG00000196357 19 36673188 36705986 q13.12 ov11,ov40,ov55 3 ZNF146 ENSG00000167635 19 36705504 36729673 q13.12 ov11,ov40,ov55 3 NCRNA00085 ENSG00000182310 19 52196614 52197610 q13.41 ov11,ov40,ov55 3 HAS1 ENSG00000105509 19 52216365 52227237 q13.41 ov11,ov40,ov55 3 FPR1 ENSG00000171051 19 52249027 52255150 q13.41 ov11,ov40,ov55 3 FPR2 ENSG00000171049 19 52264183 52273760 q13.41 ov11,ov40,ov55 3 FPR3 ENSG00000187474 19 52298416 52329442 q13.41 ov11,ov40,ov55 3 ZNF577 ENSG00000161551 19 52359063 52394203 q13.41 ov11,ov40,ov55 3 ZNF649 ENSG00000198093 19 52392489 52408247 q13.41 ov11,ov40,ov55 3 ZNF613 ENSG00000176024 19 52430688 52449005 q13.41 ov11,ov40,ov55 3 ZNF615 ENSG00000197619 19 52467594 52627345 q13.41 ov11,ov40,ov55 3 ZNF614 ENSG00000142556 19 52516390 52531680 q13.41 ov11,ov40,ov55 3 ZNF841 ENSG00000197608 19 52567719 52588141 q13.41 ov11,ov40,ov55 3 ZNF28 ENSG00000198538 19 53300659 53686232 q13.42 ov11,ov40,ov58 3 ZNF468 ENSG00000204604 19 53341786 53360902 q13.41 ov11,ov40,ov58 3 ZNF320 ENSG00000182986 19 53379425 53589703 q13.41 ov11,ov40,ov58 3 ZNF321 ENSG00000221874 19 53430388 53445847 q13.41 ov11,ov40,ov58 3 ZNF816A ENSG00000180257 19 53452634 53466114 q13.41 ov11,ov40,ov58 3 ZNF160 ENSG00000170949 19 53569867 53606687 q13.42 ov11,ov40,ov58 3 ZNF415 ENSG00000170954 19 53611133 53636148 q13.42 ov11,ov40,ov58 3 ZNF347 ENSG00000197937 19 53642648 53662280 q13.42 ov11,ov40,ov58 3 NDUFA3 ENSG00000170906 19 54590421 54612034 q13.42 ov11,ov40,ov55 3 OSCAR ENSG00000170909 19 54597933 54606000 q13.42 ov11,ov40,ov55 3 TFPT ENSG00000105619 19 54610320 54619055 q13.42 ov11,ov40,ov55 3 PRPF31 ENSG00000105618 19 54618790 54635150 q13.42 ov11,ov40,ov55 3 CNOT3 ENSG00000088038 19 54641449 54659427 q13.42 ov11,ov40,ov55 3 LENG1 ENSG00000105617 19 54659381 54663446 q13.42 ov11,ov40,ov55 3 TMC4 ENSG00000167608 19 54663836 54676944 q13.42 ov11,ov40,ov55 3 MBOAT7 ENSG00000125505 19 54677109 54693666 q13.42 ov11,ov40,ov55 3 TSEN34 ENSG00000170892 19 54693789 54697526 q13.42 ov11,ov40,ov55 3 RPS9 ENSG00000170889 19 54704726 54752862 q13.42 ov11,ov40,ov55 3 LILRB3 ENSG00000204577 19 54720147 54747130 q13.42 ov11,ov40,ov55 3 LILRB5 ENSG00000105609 19 54754269 54761167 q13.42 ov11,ov40,ov55 3 LILRB2 ENSG00000131042 19 54777675 54785033 q13.42 ov11,ov40,ov55 3 LILRA3 ENSG00000170866 19 54797644 54809952 q13.42 ov11,ov40,ov55 3 LILRA5 ENSG00000187116 19 54818353 54824409 q13.42 ov11,ov40,ov55 3 LILRA4 ENSG00000187095 19 54820182 54850421 q13.42 ov11,ov40,ov55 3 LAIR1 ENSG00000167613 19 54865235 54882129 q13.42 ov11,ov40,ov55 3 TTYH1 ENSG00000167614 19 54926373 54948080 q13.42 ov11,ov40,ov55 3 LENG8 ENSG00000167615 19 54960065 54973196 q13.42 ov11,ov40,ov55 3 LENG9 ENSG00000182909 19 54972981 54974894 q13.42 ov11,ov40,ov55 3 CDC42EP5 ENSG00000167617 19 54976210 54984422 q13.42 ov11,ov40,ov55 3 LAIR2 ENSG00000167618 19 55009100 55021895 q13.42 ov11,ov40,ov55 3 KIR3DX1 ENSG00000104970 19 55043909 55057022 q13.42 ov11,ov40,ov55 3 LILRB1 ENSG00000104972 19 55084495 55148979 q13.42 ov11,ov40,ov55 3 LILRA1 ENSG00000104974 19 55105097 55113555 q13.42 ov11,ov40,ov55 3 LILRB4 ENSG00000186818 19 55155366 55181810 q13.42 ov11,ov40,ov55 3 KIR2DL4 ENSG00000189013 19 55235964 55325972 q13.42 ov11,ov40,ov55 3 KIR2DL1 ENSG00000125498 19 55281265 55295778 q13.42 ov11,ov40,ov55 3 KIR3DL1 ENSG00000167633 19 55327893 55378662 q13.42 ov11,ov40,ov55 3 KIR2DS4 ENSG00000221957 19 55344182 55360023 q13.42 ov11,ov40,ov55 3 FCAR ENSG00000186431 19 55385549 55401839 q13.42 ov11,ov40,ov55 3 NCR1 ENSG00000189430 19 55417508 55424439 q13.42 ov11,ov40,ov55 3 NLRP7 ENSG00000167634 19 55434877 55477611 q13.42 ov11,ov40,ov55 3 NLRP2 ENSG00000022556 19 55476700 55512508 q13.42 ov11,ov40,ov55 3 GP6 ENSG00000088053 19 55525073 55549632 q13.42 ov11,ov40,ov55 3 RDH13 ENSG00000160439 19 55555711 55580897 q13.42 ov11,ov40,ov55 3 EPS8L1 ENSG00000131037 19 55583388 55599290 q13.42 ov11,ov40,ov55 3 PPP1R12C ENSG00000125503 19 55602283 55628927 q13.42 ov11,ov40,ov55 3 TNNT1 ENSG00000105048 19 55644162 55660606 q13.42 ov11,ov40,ov55 3 TNNI3 ENSG00000129991 19 55663138 55669100 q13.42 ov11,ov40,ov55 3 C19orf51 ENSG00000167646 19 55670031 55678018 q13.42 ov11,ov40,ov55 3 SYT5 ENSG00000129990 19 55684469 55691720 q13.42 ov11,ov40,ov55 3 PTPRH ENSG00000080031 19 55692616 55720842 q13.42 ov11,ov40,ov55 3 TMEM86B ENSG00000180089 19 55738116 55740632 q13.42 ov11,ov40,ov55 3 HSPBP1 ENSG00000133265 19 55773592 55791751 q13.42 ov11,ov40,ov55 3 BRSK1 ENSG00000160469 19 55795327 55823901 q13.42 ov11,ov40,ov55 3 TMEM224 ENSG00000180061 19 55824169 55836708 q13.42 ov11,ov40,ov55 3 SUV420H2 ENSG00000133247 19 55851221 55859488 q13.42 ov11,ov40,ov55 3 COX6B2 ENSG00000160471 19 55861076 55866182 q13.42 ov11,ov40,ov55 3 FAM71E2 ENSG00000180043 19 55866277 55874620 q13.42 ov11,ov40,ov55 3 IL11 ENSG00000095752 19 55875757 55881814 q13.42 ov11,ov40,ov55 3 TMEM190 ENSG00000160472 19 55888204 55889612 q13.42 ov11,ov40,ov55 3 RPL28 ENSG00000108107 19 55897300 55903449 q13.42 ov11,ov40,ov55 3 UBE2S ENSG00000108106 19 55912652 55919325 q13.42 ov11,ov40,ov55 3 ISOC2 ENSG00000063241 19 55964345 55973049 q13.42 ov11,ov40,ov55 3 ZNF628 ENSG00000197483 19 55987699 55995854 q13.42 ov11,ov40,ov55 3 NAT14 ENSG00000090971 19 55996594 55998935 q13.42 ov11,ov40,ov55 3 SBK2 ENSG00000187550 19 56041100 56048456 q13.42 ov11,ov40,ov55 3 ZNF579 ENSG00000218891 19 56088893 56092211 q13.42 ov11,ov40,ov55 3 FIZ1 ENSG00000179943 19 56102738 56110893 q13.42 ov11,ov40,ov55 3 ZNF524 ENSG00000171443 19 56111730 56114504 q13.42 ov11,ov40,ov55 3 ZNF784 ENSG00000179922 19 56132107 56135941 q13.42 ov11,ov40,ov55 3 ZNF580 ENSG00000213015 19 56152392 56154835 q13.42 ov11,ov40,ov55 3 ZNF581 ENSG00000171425 19 56154986 56156988 q13.42 ov11,ov40,ov55 3 CCDC106 ENSG00000173581 19 56158954 56164527 q13.42 ov11,ov40,ov55 3 U2AF2 ENSG00000063244 19 56165416 56186081 q13.42 ov11,ov40,ov55 3 EPN1 ENSG00000063245 19 56186561 56207132 q13.42 ov11,ov40,ov55 3 NLRP9 ENSG00000185792 19 56219798 56249768 q13.42 ov11,ov40,ov55 3 NLRP11 ENSG00000179873 19 56296770 56348128 q13.43 ov11,ov40,ov55 3 NLRP4 ENSG00000160505 19 56347944 56393218 q13.43 ov11,ov40,ov55 3 NLRP13 ENSG00000173572 19 56407311 56443702 q13.43 ov11,ov40,ov55 3 NLRP8 ENSG00000179709 19 56459198 56499995 q13.43 ov11,ov40,ov55 3 NLRP5 ENSG00000171487 19 56511092 56573176 q13.43 ov11,ov40,ov55 3 ZNF787 ENSG00000142409 19 56598732 56632649 q13.43 ov11,ov40,ov55 3 ZNF444 ENSG00000167685 19 56652556 56672261 q13.43 ov11,ov40,ov55 3 GALP ENSG00000197487 19 56687389 56697144 q13.43 ov11,ov40,ov55 3 ZSCAN5B ENSG00000197213 19 56701058 56704421 q13.43 ov11,ov40,ov55 3 ZSCAN5C ENSG00000204532 19 56717283 56720569 q13.43 ov11,ov40,ov55 3 ZSCAN5A ENSG00000131848 19 56732681 56879752 q13.43 ov11,ov40,ov55 3 ZNF542 ENSG00000197025 19 56879665 56891197 q13.43 ov11,ov40,ov55 3 ZNF582 ENSG00000018869 19 56894648 56904889 q13.43 ov11,ov40,ov55 3 Supplementary Table 2 Page 9
ZNF583 ENSG00000198440 19 56915718 56936400 q13.43 ov11,ov40,ov55 3 ZNF667 ENSG00000198046 19 56951208 56988743 q13.43 ov11,ov40,ov55 3 ZNF471 ENSG00000196263 19 57019212 57040270 q13.43 ov11,ov40,ov55 3 ZFP28 ENSG00000196867 19 57050317 57068169 q13.43 ov11,ov40,ov55 3 ZNF470 ENSG00000197016 19 57078890 57094261 q13.43 ov11,ov40,ov55 3 ZNF71 ENSG00000197951 19 57106664 57135540 q13.43 ov11,ov40,ov55 3 ZNF835 ENSG00000127903 19 57174635 57176830 q13.43 ov11,ov40,ov55 3 PEG3 ENSG00000198300 19 57285930 57352075 q13.43 ov11,ov40,ov55 3 USP29 ENSG00000131864 19 57633693 57643294 q13.43 ov11,ov40,ov55 3 ZIM3 ENSG00000141946 19 57645464 57656570 q13.43 ov11,ov40,ov55 3 DUXA ENSG00000204527 19 57663094 57678856 q13.43 ov11,ov40,ov55 3 ZNF264 ENSG00000083844 19 57702869 57734212 q13.43 ov11,ov40,ov55 3 AURKC ENSG00000105146 19 57742377 57746915 q13.43 ov11,ov40,ov55 3 ZNF805 ENSG00000204524 19 57752053 57774106 q13.43 ov11,ov40,ov55 3 ZNF460 ENSG00000197714 19 57791853 57805436 q13.43 ov11,ov40,ov55 3 ZNF543 ENSG00000178229 19 57831877 57842144 q13.43 ov11,ov40,ov55 3 ZNF304 ENSG00000131845 19 57862645 57871266 q13.43 ov11,ov40,ov55 3 ZNF547 ENSG00000152433 19 57874891 57890923 q13.43 ov11,ov40,ov55 3 ZNF548 ENSG00000188785 19 57901218 57912785 q13.43 ov11,ov40,ov55 3 ZNF17 ENSG00000186272 19 57922529 57933307 q13.43 ov11,ov40,ov55 3 ZNF749 ENSG00000186230 19 57946693 57957191 q13.43 ov11,ov40,ov55 3 VN1R1 ENSG00000178201 19 57966542 57967854 q13.43 ov11,ov40,ov55 3 ZNF772 ENSG00000197128 19 57980955 57988938 q13.43 ov11,ov40,ov55 3 ZNF419 ENSG00000105136 19 57999079 58006048 q13.43 ov11,ov40,ov55 3 ZNF773 ENSG00000152439 19 58011309 58024436 q13.43 ov11,ov40,ov55 3 ZNF549 ENSG00000121406 19 58038693 58052124 q13.43 ov11,ov40,ov55 3 ZNF550 ENSG00000105132 19 58053208 58071231 q13.43 ov11,ov40,ov55 3 ZNF416 ENSG00000083817 19 58082935 58090243 q13.43 ov11,ov40,ov55 3 ZIK1 ENSG00000171649 19 58095510 58103758 q13.43 ov11,ov40,ov55 3 ZNF530 ENSG00000183647 19 58111253 58119637 q13.43 ov11,ov40,ov55 3 ZNF134 ENSG00000213762 19 58125628 58134372 q13.43 ov11,ov40,ov55 3 ZNF211 ENSG00000121417 19 58141761 58154147 q13.43 ov11,ov40,ov55 3 ZSCAN4 ENSG00000180532 19 58180303 58190519 q13.43 ov11,ov40,ov55 3 ZNF551 ENSG00000204519 19 58193357 58201167 q13.43 ov11,ov40,ov55 3 ZNF154 ENSG00000179909 19 58208735 58220579 q13.43 ov11,ov40,ov55 3 DEFB126 ENSG00000125788 20 123231 126391 p13 ov11,ov48,ov80 3 DEFB127 ENSG00000088782 20 138122 139804 p13 ov11,ov48,ov80 3 DEFB128 ENSG00000185982 20 168494 170322 p13 ov11,ov48,ov80 3 DEFB129 ENSG00000125903 20 207899 210523 p13 ov11,ov48,ov80 3 DEFB132 ENSG00000186458 20 238377 241735 p13 ov11,ov48,ov80 3 C20orf96 ENSG00000196476 20 251524 271390 p13 ov11,ov48,ov80 3 ZCCHC3 ENSG00000177764 20 278204 280961 p13 ov11,ov48,ov80 3 SOX12 ENSG00000177732 20 306239 310865 p13 ov11,ov48,ov80 3 TGM3 ENSG00000125780 20 2276613 2321725 p13 ov11,ov80,ov81 3 TGM6 ENSG00000166948 20 2361554 2413399 p13 ov11,ov80,ov81 3 SNRPB ENSG00000125835 20 2442281 2451499 p13 ov11,ov80,ov81 3 ZNF343 ENSG00000088876 20 2462463 2505348 p13 ov11,ov80,ov81 3 C20orf196 ENSG00000171984 20 5731047 5845020 p12.3 ov100,ov48,ov81 3 CHGB ENSG00000089199 20 5891974 5906003 p12.3 ov100,ov48,ov81 3 TRMT6 ENSG00000089195 20 5918486 5931182 p12.3 ov100,ov48,ov81 3 MCM8 ENSG00000125885 20 5931298 5975827 p12.3 ov100,ov48,ov81 3 CRLS1 ENSG00000088766 20 5986739 6020695 p12.3 ov100,ov48,ov81 3 LRRN4 ENSG00000125872 20 6021425 6034694 p12.3 ov100,ov48,ov81 3 FERMT1 ENSG00000101311 20 6055493 6104191 p12.3 ov100,ov48,ov81 3 ID1 ENSG00000125968 20 30193092 30194313 q11.21 ov11,ov33,ov58 3 COX4I2 ENSG00000131055 20 30225691 30232800 q11.21 ov11,ov33,ov58 3 BCL2L1 ENSG00000171552 20 30252255 30311792 q11.21 ov11,ov33,ov58 3 TPX2 ENSG00000088325 20 30326904 30389603 q11.21 ov11,ov33,ov58 3 MYLK2 ENSG00000101306 20 30407111 30422500 q11.21 ov11,ov33,ov58 3 FOXS1 ENSG00000179772 20 30432103 30433420 q11.21 ov11,ov33,ov58 3 DUSP15 ENSG00000149599 20 30435440 30458479 q11.21 ov11,ov33,ov58 3 PDRG1 ENSG00000088356 20 30532759 30539883 q11.21 ov11,ov33,ov80 3 XKR7 ENSG00000101321 20 30555805 30586255 q11.21 ov11,ov33,ov80 3 C20orf160 ENSG00000101331 20 30598245 30619984 q11.21 ov11,ov33,ov80 3 HCK ENSG00000101336 20 30640045 30689659 q11.21 ov11,ov33,ov80 3 TM9SF4 ENSG00000101337 20 30697309 30755061 q11.21 ov11,ov33,ov80 3 PLAGL2 ENSG00000126003 20 30780307 30795546 q11.21 ov11,ov33,ov80 3 POFUT1 ENSG00000101346 20 30795696 30826464 q11.21 ov11,ov33,ov80 3 KIF3B ENSG00000101350 20 30865467 30922807 q11.21 ov11,ov33,ov80 3 ASXL1 ENSG00000171456 20 30946153 31027121 q11.21 ov11,ov33,ov80 3 C20orf112 ENSG00000197183 20 31030864 31172875 q11.21 ov11,ov33,ov80 3 COMMD7 ENSG00000149600 20 31290494 31331814 q11.21 ov11,ov33,ov80 3 DNMT3B ENSG00000088305 20 31350191 31397161 q11.21 ov11,ov33,ov80 3 NDRG3 ENSG00000101079 20 35280169 35374481 q11.23 ov11,ov33,ov58 3 DSN1 ENSG00000149636 20 35380194 35402230 q11.23 ov11,ov33,ov58 3 DSCR4 ENSG00000184029 21 39323728 39493454 q22.13 ov2,ov56,ov66 3 DSCR8 ENSG00000198054 21 39493545 39528604 q22.13 ov2,ov56,ov66 3 KCNJ15 ENSG00000157551 21 39628663 39673748 q22.13 ov2,ov56,ov66 3 ERG ENSG00000157554 21 39751949 40033704 q22.2 ov2,ov56,ov66 3 C21orf29 ENSG00000175894 21 45917777 46131495 q22.3 ov2,ov66,ov94 3 KRTAP10-3 ENSG00000212935 21 45977673 45978643 q22.3 ov2,ov66,ov94 3 KRTAP10-4 ENSG00000215454 21 45993617 45994980 q22.3 ov2,ov66,ov94 3 KRTAP10-6 ENSG00000188155 21 45999332 46012386 q22.3 ov2,ov66,ov94 3 KRTAP10-7 ENSG00000205441 21 46020497 46022091 q22.3 ov2,ov66,ov94 3 KRTAP10-8 ENSG00000187766 21 46031996 46032871 q22.3 ov2,ov66,ov94 3 KRTAP10-9 ENSG00000221837 21 46047064 46048075 q22.3 ov2,ov66,ov94 3 KRTAP10-10 ENSG00000221859 21 46057273 46058370 q22.3 ov2,ov66,ov94 3 KRTAP10-11 ENSG00000205439 21 46066350 46078258 q22.3 ov2,ov66,ov94 3 KRTAP12-4 ENSG00000212933 21 46074130 46074576 q22.3 ov2,ov66,ov94 3 KRTAP12-2 ENSG00000221864 21 46086106 46086844 q22.3 ov2,ov66,ov94 3 KRTAP12-1 ENSG00000187175 21 46101491 46102078 q22.3 ov2,ov66,ov94 3 KRTAP10-12 ENSG00000189169 21 46117087 46117880 q22.3 ov2,ov66,ov94 3 UBE2G2 ENSG00000184787 21 46188956 46221738 q22.3 ov2,ov66,ov94 3 SUMO3 ENSG00000184900 21 46191374 46238044 q22.3 ov2,ov66,ov94 3 PTTG1IP ENSG00000183255 21 46269513 46293741 q22.3 ov2,ov66,ov94 3 ITGB2 ENSG00000160255 21 46305868 46348753 q22.3 ov2,ov66,ov94 3 C21orf67 ENSG00000183250 21 46352729 46359828 q22.3 ov2,ov66,ov94 3 C21orf69 ENSG00000226178 21 46353607 46354098 q22.3 ov2,ov66,ov94 3 POTEH ENSG00000198062 22 16255355 16287937 q11.1 ov14,ov33,ov40 3 OR11H1 ENSG00000130538 22 16448824 16449805 q11.1 ov14,ov33,ov40 3 APOL3 ENSG00000128284 22 36536377 36562225 q12.3 ov108,ov54,ov61 3 APOL4 ENSG00000100336 22 36585176 36600886 q12.3 ov108,ov54,ov61 3 APOL2 ENSG00000128335 22 36622255 36636000 q12.3 ov108,ov54,ov61 3 APOL1 ENSG00000100342 22 36649117 36663576 q12.3 ov108,ov54,ov61 3 MYH9 ENSG00000100345 22 36677327 36784012 q12.3 ov108,ov54,ov61 3 CDC2L2 ENSG00000008128 1 1571100 1655791 p36.33 ov29,ov66 2 SLC35E2 ENSG00000215790 1 1656277 1677431 p36.33 ov29,ov66 2 NADK ENSG00000008130 1 1682671 1711508 p36.33 ov29,ov66 2 GNB1 ENSG00000078369 1 1716730 1822495 p36.33 ov29,ov66 2 CALML6 ENSG00000169885 1 1846266 1848733 p36.33 ov29,ov66 2 TMEM52 ENSG00000178821 1 1849029 1850740 p36.33 ov29,ov66 2 C1orf222 ENSG00000205073 1 1853396 1859368 p36.33 ov29,ov66 2 KIAA1751 ENSG00000142609 1 1884752 1935276 p36.33 ov29,ov66 2 GABRD ENSG00000187730 1 1950768 1962192 p36.33 ov29,ov66 2 PRKCZ ENSG00000067606 1 1981909 2116832 p36.33 ov29,ov66 2 C1orf86 ENSG00000162585 1 2115917 2132537 p36.33 ov29,ov66 2 SKI ENSG00000157933 1 2160134 2241652 p36.33 ov29,ov66 2 MORN1 ENSG00000116151 1 2252696 2356219 p36.32 ov29,ov66 2 RER1 ENSG00000157916 1 2323214 2336874 p36.32 ov29,ov66 2 PEX10 ENSG00000157911 1 2336243 2344010 p36.32 ov29,ov66 2 PLCH2 ENSG00000149527 1 2398898 2436969 p36.32 ov29,ov66 2 PANK4 ENSG00000157881 1 2439975 2458050 p36.32 ov29,ov66 2 HES5 ENSG00000197921 1 2460186 2461684 p36.32 ov29,ov66 2 TNFRSF14 ENSG00000157873 1 2487078 2495265 p36.32 ov29,ov66 2 C1orf93 ENSG00000157870 1 2518235 2522906 p36.32 ov29,ov66 2 MMEL1 ENSG00000142606 1 2522081 2564429 p36.32 ov29,ov66 2 TTC34 ENSG00000215912 1 2572807 2706280 p36.32 ov29,ov66 2 SLC45A1 ENSG00000162426 1 8378169 8404227 p36.23 ov58,ov66 2 RERE ENSG00000142599 1 8412466 8877699 p36.23 ov58,ov66 2 ENO1 ENSG00000074800 1 8921063 8938780 p36.23 ov58,ov66 2 CA6 ENSG00000131686 1 9005922 9035146 p36.23 ov58,ov66 2 SLC2A7 ENSG00000197241 1 9063359 9086404 p36.23 ov58,ov66 2 SLC2A5 ENSG00000142583 1 9097007 9129887 p36.23 ov58,ov66 2 GPR157 ENSG00000180758 1 9164081 9189250 p36.23 ov58,ov66 2 H6PD ENSG00000049239 1 9294863 9331396 p36.22 ov58,ov66 2 SPSB1 ENSG00000171621 1 9352941 9429588 p36.22 ov58,ov66 2 TMEM51 ENSG00000171729 1 15479028 15546974 p36.21 ov58,ov66 2 C1orf195 ENSG00000204464 1 15490840 15497813 p36.21 ov58,ov66 2 FHAD1 ENSG00000142621 1 15563065 15724623 p36.21 ov58,ov66 2 EFHD2 ENSG00000142634 1 15736441 15756834 p36.21 ov58,ov66 2 CTRC ENSG00000162438 1 15764935 15779541 p36.21 ov58,ov66 2 CELA2A ENSG00000142615 1 15783224 15798580 p36.21 ov58,ov66 2 CELA2B ENSG00000215704 1 15802596 15817892 p36.21 ov58,ov66 2 CASP9 ENSG00000132906 1 15814735 15851384 p36.21 ov58,ov66 2 DNAJC16 ENSG00000116138 1 15853308 15902587 p36.21 ov58,ov66 2 AGMAT ENSG00000116771 1 15899152 15911605 p36.21 ov58,ov66 2 DDI2 ENSG00000197312 1 15944070 15986748 p36.21 ov58,ov66 2 RSC1A1 ENSG00000215695 1 15986364 15988217 p36.21 ov58,ov66 2 PLEKHM2 ENSG00000116786 1 16008026 16061262 p36.21 ov58,ov66 2 SLC25A34 ENSG00000162461 1 16062809 16067884 p36.21 ov58,ov66 2 TMEM82 ENSG00000162460 1 16068917 16074477 p36.21 ov58,ov66 2 FBLIM1 ENSG00000162458 1 16083139 16113089 p36.21 ov58,ov66 2 SPEN ENSG00000065526 1 16174359 16266950 p36.21 ov58,ov66 2 ZBTB17 ENSG00000116809 1 16268364 16302627 p36.13 ov58,ov66 2 C1orf64 ENSG00000183888 1 16330731 16335302 p36.13 ov58,ov66 2 HSPB7 ENSG00000173641 1 16340523 16345964 p36.13 ov58,ov66 2 CLCNKA ENSG00000186510 1 16348366 16360545 p36.13 ov58,ov66 2 CLCNKB ENSG00000184908 1 16370247 16383803 p36.13 ov58,ov66 2 FAM131C ENSG00000185519 1 16384265 16400127 p36.13 ov58,ov66 2 NBPF1 ENSG00000219481 1 16888818 16940083 p36.13 ov58,ov66 2 MSTP9 ENSG00000186715 1 17081405 17090975 p36.13 ov58,ov66 2 CROCC ENSG00000058453 1 17248445 17299474 p36.13 ov58,ov66 2 MFAP2 ENSG00000117122 1 17301003 17307173 p36.13 ov58,ov66 2 ATP13A2 ENSG00000159363 1 17312453 17338423 p36.13 ov58,ov66 2 SDHB ENSG00000117118 1 17345230 17380665 p36.13 ov58,ov66 2 PADI2 ENSG00000117115 1 17393256 17445948 p36.13 ov58,ov66 2 ALPL ENSG00000162551 1 21835858 21904905 p36.12 ov58,ov66 2 RAP1GAP ENSG00000076864 1 21922708 21995856 p36.12 ov58,ov66 2 USP48 ENSG00000090686 1 22004791 22109688 p36.12 ov58,ov66 2 LDLRAD2 ENSG00000187942 1 22138758 22151714 p36.12 ov58,ov66 2 HSPG2 ENSG00000142798 1 22148738 22263710 p36.12 ov58,ov66 2 CELA3B ENSG00000219073 1 22303418 22325135 p36.12 ov58,ov66 2 CELA3A ENSG00000142789 1 22328149 22339033 p36.12 ov58,ov66 2 CDC42 ENSG00000070831 1 22379120 22419437 p36.12 ov58,ov66 2 WNT4 ENSG00000162552 1 22443798 22470462 p36.12 ov58,ov66 2 ZBTB40 ENSG00000184677 1 22778344 22857650 p36.12 ov58,ov66 2 EPHA8 ENSG00000070886 1 22890004 22930087 p36.12 ov58,ov66 2 C1QA ENSG00000173372 1 22963118 22966175 p36.12 ov58,ov66 2 C1QC ENSG00000159189 1 22970118 22974600 p36.12 ov58,ov66 2 C1QB ENSG00000173369 1 22979682 22988029 p36.12 ov58,ov66 2 EPHB2 ENSG00000133216 1 23037331 23241823 p36.12 ov58,ov66 2 KDM1 ENSG00000004487 1 23345946 23410184 p36.12 ov58,ov66 2 LUZP1 ENSG00000169641 1 23346640 23495351 p36.12 ov58,ov66 2 HTR1D ENSG00000179546 1 23516993 23521222 p36.12 ov58,ov66 2 HNRNPR ENSG00000125944 1 23636277 23670853 p36.12 ov58,ov66 2 ZNF436 ENSG00000125945 1 23685941 23696357 p36.12 ov58,ov66 2 C1orf213 ENSG00000187251 1 23695464 23704184 p36.12 ov58,ov66 2 TCEA3 ENSG00000204219 1 23706923 23751261 p36.12 ov58,ov66 2 E2F2 ENSG00000007968 1 23832922 23857713 p36.12 ov5074,ov66 2 ID3 ENSG00000117318 1 23884409 23886322 p36.12 ov5074,ov66 2 MDS2 ENSG00000197880 1 23953824 23967056 p36.11 ov5074,ov66 2 RPL11 ENSG00000142676 1 24018294 24022915 p36.11 ov5074,ov66 2 RHCE ENSG00000188672 1 25688741 25756683 p36.11 ov58,ov66 2 TMEM57 ENSG00000204178 1 25757388 25826700 p36.11 ov58,ov66 2 LDLRAP1 ENSG00000157978 1 25870076 25895377 p36.11 ov58,ov66 2 MAN1C1 ENSG00000117643 1 25943959 26111258 p36.11 ov58,ov66 2 SEPN1 ENSG00000162430 1 26126667 26144713 p36.11 ov58,ov66 2 FAM54B ENSG00000117640 1 26145131 26159432 p36.11 ov58,ov66 2 C1orf135 ENSG00000127423 1 26160497 26185848 p36.11 ov58,ov66 2 PAQR7 ENSG00000182749 1 26187702 26197744 p36.11 ov58,ov66 2 STMN1 ENSG00000117632 1 26210672 26233368 p36.11 ov58,ov66 2 PAFAH2 ENSG00000158006 1 26286258 26324648 p36.11 ov58,ov66 2 EXTL1 ENSG00000158008 1 26348271 26362950 p36.11 ov58,ov66 2 SLC30A2 ENSG00000158014 1 26364514 26372604 p36.11 ov58,ov66 2 TRIM63 ENSG00000158022 1 26377798 26394121 p36.11 ov58,ov66 2 PDIK1L ENSG00000175087 1 26437664 26452021 p36.11 ov58,ov66 2 GRRP1 ENSG00000197245 1 26485511 26489118 p36.11 ov58,ov66 2 ZNF593 ENSG00000142684 1 26496388 26497360 p36.11 ov58,ov66 2 CNKSR1 ENSG00000142675 1 26503981 26516370 p36.11 ov58,ov66 2 CATSPER4 ENSG00000188782 1 26517119 26529459 p36.11 ov58,ov66 2 CCDC21 ENSG00000130695 1 26560693 26605298 p36.11 ov58,ov66 2 SH3BGRL3 ENSG00000142669 1 26606213 26608012 p36.11 ov58,ov66 2 UBXN11 ENSG00000158062 1 26608773 26644854 p36.11 ov58,ov66 2 CD52 ENSG00000169442 1 26644411 26647013 p36.11 ov58,ov66 2 AIM1L ENSG00000176092 1 26648350 26670443 p36.11 ov58,ov66 2 ZNF683 ENSG00000176083 1 26688125 26701013 p36.11 ov58,ov66 2 LIN28 ENSG00000131914 1 26737269 26756219 p36.11 ov58,ov66 2 DHDDS ENSG00000117682 1 26758773 26797793 p36.11 ov58,ov66 2 HMGN2 ENSG00000198830 1 26798902 26803131 p36.11 ov58,ov66 2 RPS6KA1 ENSG00000117676 1 26856249 26901521 p36.11 ov58,ov66 2 ARID1A ENSG00000117713 1 27022522 27108601 p36.11 ov58,ov66 2 PIGV ENSG00000060642 1 27113963 27124884 p36.11 ov58,ov66 2 ZDHHC18 ENSG00000204160 1 27153201 27182207 p36.11 ov58,ov66 2 SFN ENSG00000175793 1 27189653 27190947 p36.11 ov58,ov66 2 GPN2 ENSG00000142751 1 27205873 27216869 p36.11 ov58,ov66 2 GPATCH3 ENSG00000198746 1 27216979 27226962 p36.11 ov58,ov66 2 NUDC ENSG00000090273 1 27226729 27272888 p36.11 ov58,ov66 2 NR0B2 ENSG00000131910 1 27237975 27240567 p36.11 ov58,ov66 2 C1orf172 ENSG00000175707 1 27276061 27286897 p36.11 ov58,ov66 2 THRAP3 ENSG00000054118 1 36690017 36770955 p34.3 ov29,ov48 2 C1orf113 ENSG00000214193 1 36771988 36790487 p34.3 ov29,ov48 2 FAM176B ENSG00000142694 1 36787632 36789755 p34.3 ov29,ov48 2 STK40 ENSG00000196182 1 36805225 36851497 p34.3 ov29,ov48 2 LSM10 ENSG00000181817 1 36859031 36863493 p34.3 ov29,ov48 2 C1orf102 ENSG00000116885 1 36883507 36916052 p34.3 ov29,ov48 2 MRPS15 ENSG00000116898 1 36921362 36930040 p34.3 ov29,ov48 2 CSF3R ENSG00000119535 1 36931644 36948879 p34.3 ov29,ov48 2 AKIRIN1 ENSG00000174574 1 39456916 39484692 p34.3 ov48,ov58 2 NDUFS5 ENSG00000168653 1 39491990 39500308 p34.3 ov48,ov58 2 MACF1 ENSG00000127603 1 39549839 39952789 p34.3 ov48,ov58 2 RIMS3 ENSG00000117016 1 41086352 41131328 p34.2 ov48,ov58 2 NFYC ENSG00000066136 1 41157242 41237277 p34.2 ov48,ov58 2 KCNQ4 ENSG00000117013 1 41249684 41306123 p34.2 ov48,ov58 2 CITED4 ENSG00000179862 1 41326729 41328018 p34.2 ov48,ov58 2 CTPS ENSG00000171793 1 41445007 41478226 p34.2 ov48,ov58 2 SLFNL1 ENSG00000171790 1 41481269 41488909 p34.2 ov48,ov58 2 SCMH1 ENSG00000010803 1 41492874 41707788 p34.2 ov48,ov58 2 ARHGEF11 ENSG00000132694 1 156904633 157015162 q23.1 ov55,ov80 2 ETV3 ENSG00000117036 1 157094459 157108383 q23.1 ov55,ov80 2 FCRL2 ENSG00000132704 1 157715521 157746910 q23.1 ov55,ov80 2 FCRL1 ENSG00000163534 1 157764655 157789891 q23.1 ov55,ov80 2 CD5L ENSG00000073754 1 157800706 157811634 q23.1 ov55,ov80 2 KIRREL ENSG00000183853 1 157963063 158070052 q23.1 ov55,ov80 2 CD1D ENSG00000158473 1 158149737 158156214 q23.1 ov55,ov80 2 ACOXL ENSG00000153093 2 111490150 111875799 q13 ov55,ov65 2 BCL2L11 ENSG00000153094 2 111876955 111926022 q13 ov55,ov65 2 NT5DC4 ENSG00000144130 2 113479063 113500452 q13 ov55,ov65 2 CKAP2L ENSG00000169607 2 113493930 113522204 q13 ov55,ov65 2 Supplementary Table 2 Page 10
IL1A ENSG00000115008 2 113531495 113542971 q13 ov55,ov65 2 IL1B ENSG00000125538 2 113587337 113594393 q13 ov55,ov65 2 IL1F7 ENSG00000125571 2 113670546 113676456 q13 ov55,ov65 2 IL1F9 ENSG00000136688 2 113730780 113743227 q13 ov55,ov65 2 IL1F6 ENSG00000136694 2 113763038 113766126 q13 ov55,ov65 2 IL1F8 ENSG00000136696 2 113779668 113810440 q13 ov55,ov65 2 IL1F5 ENSG00000136695 2 113816215 113822959 q13 ov55,ov65 2 IL1F10 ENSG00000136697 2 113825547 113833425 q13 ov55,ov65 2 IL1RN ENSG00000136689 2 113868693 113891592 q13 ov55,ov65 2 PSD4 ENSG00000125637 2 113931557 113960802 q13 ov55,ov65 2 PAX8 ENSG00000125618 2 113973574 114036498 q13 ov55,ov65 2 RABL2A ENSG00000144134 2 114384816 114400974 q13 ov55,ov65 2 SLC35F5 ENSG00000115084 2 114471930 114514400 q14.1 ov55,ov65 2 ACTR3 ENSG00000115091 2 114647537 114716165 q14.1 ov55,ov65 2 DPP10 ENSG00000175497 2 115199876 116603328 q14.1 ov55,ov65 2 ANAPC13 ENSG00000129055 3 134196547 134204863 q22.2 ov58,ov65 2 CEP63 ENSG00000182923 3 134204575 134293853 q22.2 ov58,ov65 2 HLTF ENSG00000071794 3 148747904 148804341 q24 ov52,ov58 2 HPS3 ENSG00000163755 3 148847371 148891305 q24 ov52,ov58 2 CP ENSG00000047457 3 148890292 148939832 q25.1 ov52,ov58 2 TM4SF18 ENSG00000163762 3 149036762 149051470 q25.1 ov52,ov58 2 EVI1 ENSG00000085276 3 168801287 168865522 q26.2 ov44,ov57 2 MYNN ENSG00000085274 3 169490853 169505333 q26.2 ov44,ov57 2 LRRC34 ENSG00000171757 3 169511216 169530452 q26.2 ov44,ov57 2 LPP ENSG00000145012 3 187871072 188597441 q27.3 ov57,ov65 2 TPRG1 ENSG00000188001 3 188665003 189041270 q28 ov57,ov65 2 C3orf59 ENSG00000180611 3 192514607 192635950 q29 ov57,ov65 2 HRASLS ENSG00000127252 3 192958914 192995527 q29 ov57,ov65 2 ATP13A5 ENSG00000187527 3 192992579 193096632 q29 ov57,ov65 2 ATP13A4 ENSG00000127249 3 193119866 193272696 q29 ov57,ov65 2 OPA1 ENSG00000198836 3 193310933 193415599 q29 ov57,ov65 2 HES1 ENSG00000114315 3 193853934 193856372 q29 ov57,ov65 2 CPN2 ENSG00000178772 3 194060494 194072057 q29 ov57,ov65 2 LRRC15 ENSG00000172061 3 194075979 194090472 q29 ov57,ov65 2 GP5 ENSG00000178732 3 194115550 194119995 q29 ov57,ov65 2 ATP13A3 ENSG00000133657 3 194123401 194222232 q29 ov57,ov65 2 TMEM44 ENSG00000145014 3 194308403 194354418 q29 ov57,ov65 2 LSG1 ENSG00000041802 3 194361518 194393206 q29 ov57,ov65 2 TMED11P ENSG00000215367 4 1109048 1147514 p16.3 ov54,ov56 2 SPON2 ENSG00000159674 4 1160725 1166980 p16.3 ov54,ov56 2 CTBP1 ENSG00000159692 4 1205228 1242908 p16.3 ov54,ov56 2 C4orf42 ENSG00000196810 4 1244177 1246616 p16.3 ov54,ov56 2 MAEA ENSG00000090316 4 1283672 1333924 p16.3 ov54,ov56 2 KIAA1530 ENSG00000163945 4 1341054 1381837 p16.3 ov54,ov56 2 RGS12 ENSG00000159788 4 3315874 3441638 p16.3 ov53,ov56 2 HGFAC ENSG00000109758 4 3443649 3451222 p16.3 ov53,ov56 2 DOK7 ENSG00000175920 4 3465033 3502552 p16.3 ov53,ov56 2 LRPAP1 ENSG00000163956 4 3514290 3534224 p16.3 ov53,ov56 2 IRX4 ENSG00000113430 5 1877541 1882880 p15.33 ov44,ov53 2 IRX2 ENSG00000170561 5 2746286 2751769 p15.33 ov44,ov53 2 C5orf38 ENSG00000186493 5 2752262 2755511 p15.33 ov44,ov53 2 IRX1 ENSG00000170549 5 3596168 3601517 p15.33 ov44,ov53 2 DNAH5 ENSG00000039139 5 13690440 13944589 p15.2 ov44,ov48 2 TRIO ENSG00000038382 5 14143829 14509448 p15.2 ov44,ov48 2 FAM105A ENSG00000145569 5 14581891 14616285 p15.2 ov44,ov48 2 FBXL7 ENSG00000183580 5 15927998 15939900 p15.1 ov44,ov48 2 40603 ENSG00000183654 5 16067474 16179897 p15.1 ov44,ov48 2 ZNF622 ENSG00000173545 5 16451629 16465898 p15.1 ov44,ov48 2 FAM134B ENSG00000154153 5 16473148 16617118 p15.1 ov44,ov48 2 MYO10 ENSG00000145555 5 16662019 16936385 p15.1 ov44,ov48 2 CDH18 ENSG00000145526 5 19473141 19988339 p14.3 ov44,ov48 2 CDH12 ENSG00000154162 5 21750973 22853731 p14.3 ov44,ov48 2 PRDM9 ENSG00000164256 5 23507724 23528706 p14.2 ov44,ov48 2 PPARGC1B ENSG00000155846 5 149109815 149227281 q32 ov57,ov64 2 PDE6A ENSG00000132915 5 149237520 149324356 q32 ov57,ov64 2 SLC26A2 ENSG00000155850 5 149340300 149366956 q32 ov57,ov64 2 TIGD6 ENSG00000164296 5 149372685 149380217 q32 ov57,ov64 2 HMGXB3 ENSG00000113716 5 149379609 149432690 q32 ov57,ov64 2 CSF1R ENSG00000182578 5 149432855 149492935 q32 ov57,ov64 2 PDGFRB ENSG00000113721 5 149493405 149535422 q32 ov57,ov64 2 CDX1 ENSG00000113722 5 149546344 149564121 q32 ov57,ov64 2 SLC6A7 ENSG00000011083 5 149569520 149590634 q32 ov57,ov64 2 CAMK2A ENSG00000070808 5 149599055 149669403 q32 ov57,ov64 2 ARSI ENSG00000183876 5 149675909 149682525 q32 ov57,ov64 2 TCOF1 ENSG00000070814 5 149737202 149779870 q32 ov57,ov64 2 CD74 ENSG00000019582 5 149781206 149792332 q32 ov57,ov64 2 RPS14 ENSG00000164587 5 149823794 149829319 q33.1 ov57,ov64 2 LPAL2 ENSG00000213071 6 160873463 160932156 q25.3 ov107,ov53 2 LPA ENSG00000198670 6 160952515 161097555 q26 ov107,ov53 2 PLG ENSG00000122194 6 161123270 161174345 q26 ov107,ov53 2 ADAP1 ENSG00000105963 7 937538 1015235 p22.3 ov33,ov55 2 CYP2W1 ENSG00000073067 7 1022835 1029252 p22.3 ov33,ov55 2 C7orf50 ENSG00000146540 7 1036623 1177893 p22.3 ov33,ov55 2 GPR146 ENSG00000164849 7 1084212 1098897 p22.3 ov33,ov55 2 GPER ENSG00000164850 7 1121844 1133451 p22.3 ov33,ov55 2 ZFAND2A ENSG00000178381 7 1191707 1199814 p22.3 ov33,ov55 2 UNCX ENSG00000164853 7 1272509 1276962 p22.3 ov33,ov55 2 MICALL2 ENSG00000164877 7 1473996 1499109 p22.3 ov33,ov55 2 INTS1 ENSG00000164880 7 1509913 1545489 p22.3 ov33,ov55 2 MAFK ENSG00000198517 7 1570368 1582679 p22.3 ov33,ov55 2 TMEM184A ENSG00000164855 7 1581872 1600457 p22.3 ov33,ov55 2 PSMG3 ENSG00000157778 7 1606972 1610641 p22.3 ov33,ov55 2 MAD1L1 ENSG00000002822 7 1855430 2272878 p22.3 ov33,ov55 2 FTSJ2 ENSG00000122687 7 2273928 2281848 p22.3 ov33,ov55 2 NUDT1 ENSG00000106268 7 2281857 2290780 p22.3 ov33,ov55 2 SNX8 ENSG00000106266 7 2294641 2393953 p22.3 ov33,ov55 2 SDK1 ENSG00000146555 7 3341080 4308632 p22.2 ov33,ov55 2 THSD7A ENSG00000005108 7 11414170 11871824 p21.3 ov55,ov58 2 ZNF679 ENSG00000197123 7 63688852 63727309 q11.21 ov11,ov33 2 ZNF596 ENSG00000172748 8 182200 197332 p23.3 ov53,ov88 2 FAM87A ENSG00000182366 8 325934 333174 p23.3 ov53,ov88 2 FBXO25 ENSG00000147364 8 356808 419871 p23.3 ov53,ov88 2 C8orf42 ENSG00000180190 8 439943 495331 p23.3 ov53,ov88 2 ERICH1 ENSG00000104714 8 614201 681226 p23.3 ov53,ov88 2 C8orf68 ENSG00000237647 8 857837 1087483 p23.3 ov53,ov88 2 CLN8 ENSG00000182372 8 1711870 1734727 p23.3 ov53,ov88 2 ARHGEF10 ENSG00000104728 8 1772142 1906799 p23.3 ov53,ov88 2 KBTBD11 ENSG00000176595 8 1922044 1955109 p23.3 ov53,ov88 2 MYOM2 ENSG00000036448 8 1993158 2093372 p23.3 ov53,ov88 2 CSMD1 ENSG00000183117 8 2792875 3611566 p23.2 ov58,ov88 2 FAM90A3 ENSG00000230045 8 7114426 7133232 p23.1 ov53,ov88 2 FAM90A13 ENSG00000223885 8 7137292 7140766 p23.1 ov53,ov88 2 FAM90A5 ENSG00000215373 8 7144914 7148476 p23.1 ov53,ov88 2 FAM90A20 ENSG00000233295 8 7152536 7155546 p23.1 ov53,ov88 2 DEFB108P2 ENSG00000215371 8 7230636 7235022 p23.1 ov53,ov88 2 DEFB103A ENSG00000177243 8 7286491 7287870 p23.1 ov53,ov88 2 SPAG11B ENSG00000164871 8 7305275 7321192 p23.1 ov53,ov88 2 DEFB104B ENSG00000177023 8 7327826 7332604 p23.1 ov53,ov88 2 DEFB106B ENSG00000187082 8 7340026 7343909 p23.1 ov53,ov88 2 DEFB105B ENSG00000186599 8 7345191 7347115 p23.1 ov53,ov88 2 DEFB107B ENSG00000198129 8 7353368 7366833 p23.1 ov53,ov88 2 FAM90A23 ENSG00000236660 8 7406113 7441835 p23.1 ov53,ov88 2 FAM90A22 ENSG00000215365 8 7428955 7434191 p23.1 ov53,ov88 2 FAM90A15 ENSG00000189393 8 7572965 7575975 p23.1 ov53,ov88 2 FAM90A10 ENSG00000231656 8 7580613 7630062 p23.1 ov53,ov88 2 FAM90A8 ENSG00000224710 8 7595909 7599470 p23.1 ov53,ov88 2 FAM90A16 ENSG00000223535 8 7603556 7607118 p23.1 ov53,ov88 2 FAM90A9 ENSG00000235825 8 7618852 7622414 p23.1 ov53,ov88 2 DEFB107A ENSG00000186572 8 7669242 7673238 p23.1 ov53,ov88 2 DEFB105A ENSG00000186562 8 7679488 7681412 p23.1 ov53,ov88 2 DEFB106A ENSG00000186579 8 7682694 7686575 p23.1 ov53,ov88 2 DEFB104A ENSG00000176782 8 7693993 7698768 p23.1 ov53,ov88 2 SPAG11A ENSG00000178287 8 7705402 7721319 p23.1 ov53,ov88 2 DEFB103B ENSG00000176797 8 7738726 7740105 p23.1 ov53,ov88 2 DEFB4 ENSG00000171711 8 7752199 7754237 p23.1 ov53,ov88 2 DEFB108P1 ENSG00000229907 8 7791934 7796292 p23.1 ov53,ov88 2 FAM66E ENSG00000225725 8 7812536 7843571 p23.1 ov53,ov88 2 ERI1 ENSG00000104626 8 8860314 8890849 p23.1 ov31,ov58 2 PPP1R3B ENSG00000173281 8 8993776 9008220 p23.1 ov31,ov58 2 KIF13B ENSG00000197892 8 28924796 29120610 p12 ov58,ov80 2 DUSP4 ENSG00000120875 8 29193620 29208185 p12 ov58,ov80 2 KCNU1 ENSG00000215262 8 36641842 36793641 p11.23 ov80,ov88 2 FGFR1 ENSG00000077782 8 38268657 38326352 p11.22 ov58,ov80 2 C8orf86 ENSG00000196166 8 38368352 38386180 p11.22 ov58,ov80 2 IDO1 ENSG00000131203 8 39771328 39785938 p11.21 ov20,ov94 2 KIAA0146 ENSG00000164808 8 48173542 48648475 q11.21 ov58,ov94 2 CEBPD ENSG00000221869 8 48649873 48650682 q11.21 ov58,ov94 2 MCM4 ENSG00000104738 8 48873494 48890068 q11.21 ov20,ov94 2 PI15 ENSG00000137558 8 75736772 75767264 q21.11 ov88,ov94 2 CRISPLD1 ENSG00000121005 8 75896843 75946793 q21.11 ov88,ov94 2 HNF4G ENSG00000164749 8 76320177 76479045 q21.11 ov88,ov94 2 PKIA ENSG00000171033 8 79428336 79515485 q21.12 ov88,ov94 2 FAM164A ENSG00000104427 8 79578330 79631993 q21.12 ov88,ov94 2 IL7 ENSG00000104432 8 79645009 79717758 q21.12 ov88,ov94 2 STMN2 ENSG00000104435 8 80523361 80578313 q21.13 ov88,ov94 2 HEY1 ENSG00000164683 8 80676246 80680098 q21.13 ov88,ov94 2 MRPS28 ENSG00000147586 8 80831098 80942506 q21.13 ov88,ov94 2 TPD52 ENSG00000076554 8 80947107 81083836 q21.13 ov88,ov94 2 CSMD3 ENSG00000164796 8 113235161 114449242 q23.3 ov78,ov88 2 C8orf51 ENSG00000227991 8 144450336 144450515 q24.3 ov20,ov88 2 RHPN1 ENSG00000158106 8 144451025 144466389 q24.3 ov20,ov88 2 MAFA ENSG00000182759 8 144511515 144512576 q24.3 ov20,ov88 2 ZC3H3 ENSG00000014164 8 144519825 144623620 q24.3 ov20,ov88 2 GSDMD ENSG00000104518 8 144640492 144645229 q24.3 ov20,ov88 2 C8orf73 ENSG00000204839 8 144648362 144654928 q24.3 ov20,ov88 2 NAPRT1 ENSG00000147813 8 144656955 144660513 q24.3 ov20,ov88 2 EEF1D ENSG00000104529 8 144661898 144679845 q24.3 ov20,ov88 2 TIGD5 ENSG00000179886 8 144680075 144682075 q24.3 ov20,ov88 2 PYCRL ENSG00000104524 8 144686083 144691764 q24.3 ov20,ov88 2 TSTA3 ENSG00000104522 8 144694788 144699732 q24.3 ov20,ov88 2 ZNF623 ENSG00000183309 8 144718373 144735900 q24.3 ov20,ov88 2 MAPK15 ENSG00000181085 8 144798507 144804631 q24.3 ov20,ov88 2 FAM83H ENSG00000180921 8 144806103 144815914 q24.3 ov20,ov88 2 SCRIB ENSG00000180900 8 144873090 144897549 q24.3 ov20,ov88 2 NRBP2 ENSG00000185189 8 144915765 144924200 q24.3 ov20,ov88 2 PLEC1 ENSG00000178209 8 144989321 145049543 q24.3 ov20,ov88 2 PARP10 ENSG00000178685 8 145051321 145060635 q24.3 ov20,ov88 2 GRINA ENSG00000178719 8 145064226 145067583 q24.3 ov20,ov88 2 SPATC1 ENSG00000186583 8 145086582 145102014 q24.3 ov20,ov88 2 OPLAH ENSG00000178814 8 145106168 145115606 q24.3 ov20,ov88 2 EXOSC4 ENSG00000178896 8 145133522 145135548 q24.3 ov20,ov88 2 GPAA1 ENSG00000197858 8 145137524 145141118 q24.3 ov20,ov88 2 CYC1 ENSG00000179091 8 145149960 145152427 q24.3 ov20,ov88 2 SHARPIN ENSG00000179526 8 145153536 145159140 q24.3 ov20,ov88 2 MAF1 ENSG00000179632 8 145159305 145162513 q24.3 ov20,ov88 2 KIAA1875 ENSG00000179698 8 145162629 145173218 q24.3 ov20,ov88 2 C8orf30A ENSG00000235173 8 145192672 145195619 q24.3 ov20,ov88 2 HEATR7A ENSG00000179832 8 145202919 145316843 q24.3 ov20,ov88 2 SCXB ENSG00000187786 8 145321517 145323045 q24.3 ov20,ov88 2 C8orf30B ENSG00000230567 8 145437880 145440827 q24.3 ov20,ov88 2 BOP1 ENSG00000170727 8 145486056 145515120 q24.3 ov20,ov88 2 SCXA ENSG00000188686 8 145490603 145492131 q24.3 ov20,ov88 2 HSF1 ENSG00000185122 8 145515270 145538384 q24.3 ov20,ov88 2 DGAT1 ENSG00000185000 8 145538252 145550567 q24.3 ov20,ov88 2 SCRT1 ENSG00000170616 8 145554454 145559943 q24.3 ov20,ov88 2 FBXL6 ENSG00000182325 8 145579092 145582132 q24.3 ov20,ov88 2 GPR172A ENSG00000185803 8 145582225 145584946 q24.3 ov20,ov88 2 ADCK5 ENSG00000173137 8 145597731 145618451 q24.3 ov20,ov88 2 CPSF1 ENSG00000071894 8 145618446 145634733 q24.3 ov20,ov88 2 SLC39A4 ENSG00000147804 8 145637799 145642273 q24.3 ov20,ov88 2 VPS28 ENSG00000160948 8 145649000 145653927 q24.3 ov20,ov88 2 NFKBIL2 ENSG00000160949 8 145654165 145669812 q24.3 ov20,ov88 2 CYHR1 ENSG00000187954 8 145675762 145691031 q24.3 ov20,ov88 2 KIFC2 ENSG00000167702 8 145691738 145699498 q24.3 ov20,ov88 2 FOXH1 ENSG00000160973 8 145699117 145701718 q24.3 ov20,ov88 2 PPP1R16A ENSG00000160972 8 145715421 145727503 q24.3 ov20,ov88 2 GPT ENSG00000167701 8 145729465 145732554 q24.3 ov20,ov88 2 MFSD3 ENSG00000167700 8 145734463 145736579 q24.3 ov20,ov88 2 RECQL4 ENSG00000160957 8 145736672 145743200 q24.3 ov20,ov88 2 LRRC14 ENSG00000160959 8 145743391 145750557 q24.3 ov20,ov88 2 LRRC24 ENSG00000177021 8 145747773 145752408 q24.3 ov20,ov88 2 C8orf82 ENSG00000213563 8 145751604 145754458 q24.3 ov20,ov88 2 ZNF251 ENSG00000198169 8 145946295 145980970 q24.3 ov20,ov88 2 ZNF34 ENSG00000196378 8 145998503 146012725 q24.3 ov20,ov88 2 RPL8 ENSG00000161016 8 146015155 146017805 q24.3 ov20,ov88 2 ZNF517 ENSG00000197363 8 146024261 146034529 q24.3 ov20,ov88 2 ZNF7 ENSG00000147789 8 146052903 146071563 q24.3 ov20,ov88 2 COMMD5 ENSG00000170619 8 146075552 146078932 q24.3 ov20,ov88 2 ZNF250 ENSG00000196150 8 146092748 146126850 q24.3 ov20,ov88 2 ZNF16 ENSG00000170631 8 146155746 146176274 q24.3 ov20,ov88 2 ZNF252 ENSG00000196922 8 146201799 146228281 q24.3 ov20,ov88 2 C8orf77 ENSG00000237858 8 146228372 146231015 q24.3 ov20,ov88 2 PPP2R4 ENSG00000119383 9 131873243 131911225 q34.11 ov34,ov61 2 IER5L ENSG00000188483 9 131937835 131940540 q34.11 ov34,ov61 2 ABL1 ENSG00000097007 9 133589268 133763062 q34.12 ov56,ov61 2 QRFP ENSG00000188710 9 133768815 133769225 q34.12 ov56,ov61 2 FIBCD1 ENSG00000130720 9 133777825 133814527 q34.12 ov56,ov61 2 LAMC3 ENSG00000050555 9 133884504 133969860 q34.12 ov56,ov61 2 AIF1L ENSG00000126878 9 133971912 133998539 q34.12 ov56,ov61 2 NUP214 ENSG00000126883 9 134000981 134110057 q34.13 ov56,ov61 2 FAM78A ENSG00000126882 9 134133466 134151906 q34.13 ov56,ov61 2 PPAPDC3 ENSG00000160539 9 134165081 134184649 q34.13 ov56,ov61 2 BAT2L ENSG00000130723 9 134269480 134375584 q34.13 ov56,ov61 2 POMT1 ENSG00000130714 9 134378289 134399193 q34.13 ov56,ov61 2 UCK1 ENSG00000130717 9 134399184 134406662 q34.13 ov56,ov61 2 RAPGEF1 ENSG00000107263 9 134452157 134615461 q34.13 ov56,ov61 2 UNC5B ENSG00000107731 10 72972298 73060749 q22.1 ov54,ov80 2 SLC29A3 ENSG00000198246 10 73079010 73123145 q22.1 ov54,ov80 2 CDH23 ENSG00000107736 10 73156694 73575702 q22.1 ov54,ov80 2 MACROD1 ENSG00000133315 11 63766031 63933585 q13.1 ov61,ov66 2 FLRT1 ENSG00000126500 11 63871362 63886645 q13.1 ov61,ov66 2 FERMT3 ENSG00000149781 11 63974152 63991363 q13.1 ov61,ov66 2 TRPT1 ENSG00000149743 11 63991272 63993681 q13.1 ov61,ov66 2 NUDT22 ENSG00000149761 11 63993738 63997487 q13.1 ov61,ov66 2 DNAJC4 ENSG00000110011 11 63997753 64001750 q13.1 ov61,ov66 2 VEGFB ENSG00000173511 11 64002266 64006258 q13.1 ov61,ov66 2 FKBP2 ENSG00000173486 11 64008413 64011606 q13.1 ov61,ov66 2 PPP1R14B ENSG00000173457 11 64011953 64014413 q13.1 ov61,ov66 2 PLCB3 ENSG00000149782 11 64019042 64035394 q13.1 ov61,ov66 2 BAD ENSG00000002330 11 64037301 64052176 q13.1 ov61,ov66 2 GPR137 ENSG00000173264 11 64051811 64056963 q13.1 ov61,ov66 2 KCNK4 ENSG00000182450 11 64058793 64067502 q13.1 ov61,ov66 2 C11orf20 ENSG00000219435 11 64067863 64072238 q13.1 ov61,ov66 2 ESRRA ENSG00000173153 11 64073044 64084215 q13.1 ov61,ov66 2 PRDX5 ENSG00000126432 11 64085569 64089282 q13.1 ov61,ov66 2 CCDC88B ENSG00000168071 11 64107695 64125005 q13.1 ov61,ov66 2 RPS6KA4 ENSG00000162302 11 64126625 64139686 q13.1 ov61,ov66 2 SLC22A11 ENSG00000168065 11 64323090 64338999 q13.1 ov61,ov66 2 Supplementary Table 2 Page 11
SLC22A12 ENSG00000197891 11 64358113 64369820 q13.1 ov61,ov66 2 NRXN2 ENSG00000110076 11 64373646 64490660 q13.1 ov61,ov66 2 RASGRP2 ENSG00000068831 11 64494383 64512928 q13.1 ov61,ov66 2 SUV420H1 ENSG00000110066 11 67923507 67981295 q13.2 ov61,ov66 2 C11orf24 ENSG00000171067 11 68028807 68039469 q13.2 ov61,ov66 2 A2M ENSG00000175899 12 9220304 9268825 p13.31 ov108,ov48 2 PZP ENSG00000126838 12 9301437 9360966 p13.31 ov108,ov48 2 PTMAP4 ENSG00000214138 12 9392613 9392927 p13.31 ov108,ov48 2 TAS2R10 ENSG00000121318 12 10977945 10978868 p13.2 ov108,ov48 2 PRR4 ENSG00000111215 12 10998450 11002077 p13.2 ov108,ov48 2 PRH1 ENSG00000231887 12 11033560 11036883 p13.2 ov108,ov48 2 TAS2R13 ENSG00000212128 12 11060525 11062161 p13.2 ov108,ov48 2 PRH2 ENSG00000134551 12 11081834 11087444 p13.2 ov108,ov48 2 TAS2R14 ENSG00000212127 12 11090853 11324198 p13.2 ov108,ov48 2 TAS2R50 ENSG00000212126 12 11138560 11139459 p13.2 ov108,ov48 2 TAS2R20 ENSG00000212125 12 11149545 11150474 p13.2 ov108,ov48 2 TAS2R19 ENSG00000212124 12 11174271 11175170 p13.2 ov108,ov48 2 TAS2R43 ENSG00000226761 12 11213997 11286843 p13.2 ov108,ov48 2 TAS2R42 ENSG00000186136 12 11338599 11339543 p13.2 ov108,ov48 2 PRB3 ENSG00000197870 12 11418857 11422641 p13.2 ov108,ov48 2 PRB4 ENSG00000230657 12 11460017 11463366 p13.2 ov108,ov48 2 PRB2 ENSG00000121335 12 11504757 11548500 p13.2 ov108,ov48 2 ETV6 ENSG00000139083 12 11802788 12048321 p13.2 ov108,ov48 2 RASSF8 ENSG00000123094 12 26111962 26232824 p12.1 ov11,ov33 2 BHLHE41 ENSG00000123095 12 26272961 26278003 p12.1 ov11,ov33 2 SSPN ENSG00000123096 12 26348269 26387706 p12.1 ov11,ov33 2 ITPR2 ENSG00000123104 12 26488285 26986131 p11.23 ov11,ov33 2 C12orf11 ENSG00000064102 12 27058118 27091254 p11.23 ov11,ov33 2 FGFR1OP2 ENSG00000111790 12 27091316 27118857 p11.23 ov11,ov33 2 TM7SF3 ENSG00000064115 12 27124519 27167339 p11.23 ov11,ov33 2 MED21 ENSG00000152944 12 27175483 27182682 p11.23 ov11,ov33 2 C12orf71 ENSG00000214700 12 27233990 27235455 p11.23 ov11,ov33 2 STK38L ENSG00000211455 12 27397076 27478888 p11.23 ov11,ov33 2 ARNTL2 ENSG00000029153 12 27485988 27573466 p11.23 ov11,ov33 2 C12orf70 ENSG00000165935 12 27619743 27655118 p11.23 ov11,ov33 2 PPFIBP1 ENSG00000110841 12 27677045 27848496 p11.23 ov11,ov33 2 REP15 ENSG00000174236 12 27849428 27850566 p11.22 ov11,ov33 2 MRPS35 ENSG00000061794 12 27863729 27909227 p11.22 ov11,ov33 2 KLHDC5 ENSG00000087448 12 27933187 27955972 p11.22 ov11,ov33 2 PTHLH ENSG00000087494 12 28111017 28124916 p11.22 ov11,ov33 2 FAR2 ENSG00000064763 12 29376598 29487005 p11.22 ov11,ov33 2 ERGIC2 ENSG00000087502 12 29493601 29534143 p11.22 ov11,ov33 2 OVCH1 ENSG00000187950 12 29580504 29650619 p11.22 ov11,ov33 2 TMTC1 ENSG00000133687 12 29653757 29937692 p11.22 ov11,ov33 2 IPO8 ENSG00000133704 12 30781923 30848751 p11.21 ov11,ov33 2 CAPRIN2 ENSG00000110888 12 30862488 30907448 p11.21 ov11,ov33 2 TSPAN11 ENSG00000110900 12 31079838 31149537 p11.21 ov11,ov33 2 DDX11 ENSG00000013573 12 31226779 31257725 p11.21 ov11,ov33 2 C12orf68 ENSG00000177875 12 48577366 48579709 q13.11 ov11,ov55 2 OR10AD1 ENSG00000172640 12 48596122 48597075 q13.11 ov11,ov55 2 H1FNT ENSG00000187166 12 48722763 48724062 q13.11 ov11,ov55 2 ZNF641 ENSG00000167528 12 48733911 48744554 q13.11 ov11,ov55 2 TMBIM6 ENSG00000139644 12 50135293 50174322 q13.12 ov11,ov80 2 KIAA1602 ENSG00000167566 12 50184929 50222208 q13.12 ov11,ov80 2 BCDIN3D ENSG00000186666 12 50231560 50236875 q13.12 ov11,ov80 2 FAIM2 ENSG00000135472 12 50260680 50297720 q13.12 ov11,ov80 2 AQP2 ENSG00000167580 12 50344524 50352659 q13.12 ov11,ov80 2 AQP5 ENSG00000161798 12 50355279 50359459 q13.12 ov11,ov80 2 AQP6 ENSG00000086159 12 50366620 50370922 q13.12 ov11,ov80 2 RACGAP1 ENSG00000161800 12 50382945 50419307 q13.12 ov11,ov80 2 ACCN2 ENSG00000110881 12 50451487 50477393 q13.12 ov11,ov80 2 SMARCD1 ENSG00000066117 12 50478983 50494494 q13.12 ov11,ov80 2 GPD1 ENSG00000167588 12 50497801 50505091 q13.12 ov11,ov80 2 C12orf62 ENSG00000178449 12 50505900 50514234 q13.12 ov11,ov80 2 LASS5 ENSG00000139624 12 50523608 50561145 q13.12 ov11,ov80 2 LIMA1 ENSG00000050405 12 50569565 50677353 q13.12 ov11,ov80 2 SLC4A8 ENSG00000050438 12 51796945 51902980 q13.13 ov108,ov11 2 SCN8A ENSG00000196876 12 51985020 52202297 q13.13 ov108,ov11 2 FIGNL2 ENSG00000205432 12 52213565 52216197 q13.13 ov108,ov11 2 ANKRD33 ENSG00000167612 12 52281793 52285505 q13.13 ov108,ov11 2 ACVRL1 ENSG00000139567 12 52301202 52317145 q13.13 ov108,ov11 2 ACVR1B ENSG00000135503 12 52345486 52390857 q13.13 ov108,ov11 2 GRASP ENSG00000161835 12 52400724 52409648 q13.13 ov108,ov11 2 KRT75 ENSG00000170454 12 52817983 52828309 q13.13 ov108,ov11 2 KRT6B ENSG00000185479 12 52840437 52845910 q13.13 ov108,ov11 2 KRT6C ENSG00000170465 12 52862307 52867569 q13.13 ov108,ov11 2 KRT6A ENSG00000205420 12 52880958 52887181 q13.13 ov108,ov11 2 KRT5 ENSG00000186081 12 52908363 52914243 q13.13 ov108,ov11 2 KRT71 ENSG00000139648 12 52937694 52946931 q13.13 ov108,ov11 2 KRT74 ENSG00000170484 12 52959603 52967609 q13.13 ov108,ov11 2 KRT72 ENSG00000170486 12 52979373 52995292 q13.13 ov108,ov11 2 KRT73 ENSG00000186049 12 53001355 53012343 q13.13 ov108,ov11 2 KRT2 ENSG00000172867 12 53038343 53045959 q13.13 ov108,ov11 2 SP1 ENSG00000185591 12 53773979 53810221 q13.13 ov11,ov14 2 AMHR2 ENSG00000135409 12 53817641 53825312 q13.13 ov11,ov14 2 PRR13 ENSG00000205352 12 53835433 53840426 q13.13 ov11,ov14 2 PCBP2 ENSG00000197111 12 53845886 53874945 q13.13 ov11,ov14 2 MAP3K12 ENSG00000139625 12 53874280 53893271 q13.13 ov11,ov14 2 TARBP2 ENSG00000139546 12 53894705 53900213 q13.13 ov11,ov14 2 NPFF ENSG00000139574 12 53900474 53901422 q13.13 ov11,ov14 2 ATF7 ENSG00000170653 12 53905845 54020199 q13.13 ov11,ov14 2 ATP5G2 ENSG00000135390 12 54058945 54070512 q13.13 ov11,ov14 2 CALCOCO1 ENSG00000012822 12 54104902 54121307 q13.13 ov11,ov14 2 HOXC13 ENSG00000123364 12 54332576 54340327 q13.13 ov11,ov14 2 HOXC12 ENSG00000123407 12 54348714 54350350 q13.13 ov11,ov14 2 HOXC11 ENSG00000123388 12 54366910 54370201 q13.13 ov11,ov14 2 HOXC10 ENSG00000180818 12 54378946 54384060 q13.13 ov11,ov14 2 HOXC9 ENSG00000180806 12 54393877 54397116 q13.13 ov11,ov14 2 HOXC8 ENSG00000037965 12 54402890 54406547 q13.13 ov11,ov14 2 SDR9C7 ENSG00000170426 12 57316938 57328189 q13.3 ov11,ov88 2 RDH16 ENSG00000139547 12 57345218 57351418 q13.3 ov11,ov88 2 GPR182 ENSG00000166856 12 57388230 57390468 q13.3 ov11,ov88 2 ZBTB39 ENSG00000166860 12 57392618 57400230 q13.3 ov11,ov88 2 TAC3 ENSG00000166863 12 57403784 57422667 q13.3 ov11,ov88 2 MYO1A ENSG00000166866 12 57422302 57444959 q13.3 ov11,ov88 2 TMEM194A ENSG00000166881 12 57449429 57472574 q13.3 ov11,ov88 2 NAB2 ENSG00000166886 12 57482677 57489258 q13.3 ov11,ov88 2 STAT6 ENSG00000166888 12 57489195 57505161 q13.3 ov11,ov88 2 LRP1 ENSG00000123384 12 57522276 57607123 q13.3 ov11,ov88 2 NXPH4 ENSG00000182379 12 57610578 57620229 q13.3 ov11,ov88 2 SHMT2 ENSG00000182199 12 57623519 57628714 q13.3 ov11,ov88 2 NDUFA4L2 ENSG00000185633 12 57628688 57634475 q13.3 ov11,ov88 2 STAC3 ENSG00000185482 12 57637242 57644969 q13.3 ov11,ov88 2 R3HDM2 ENSG00000179912 12 57647547 57824788 q13.3 ov11,ov88 2 LGR5 ENSG00000139292 12 71833575 71978622 q21.1 ov11,ov88 2 ZFC3H1 ENSG00000133858 12 72003384 72057749 q21.1 ov11,ov88 2 THAP2 ENSG00000173451 12 72057784 72074417 q21.1 ov11,ov88 2 TMEM19 ENSG00000139291 12 72079878 72097840 q21.1 ov11,ov88 2 RAB21 ENSG00000080371 12 72148658 72181150 q21.1 ov11,ov88 2 CMKLR1 ENSG00000174600 12 108681821 108733094 q23.3 ov108,ov18 2 TBX3 ENSG00000135111 12 115108059 115121969 q24.21 ov108,ov88 2 TESC ENSG00000088992 12 117476730 117537251 q24.22 ov108,ov66 2 FBXO21 ENSG00000135108 12 117581586 117628300 q24.22 ov108,ov66 2 NOS1 ENSG00000089250 12 117636114 117799582 q24.22 ov108,ov66 2 KSR2 ENSG00000171435 12 117890817 118406060 q24.23 ov108,ov66 2 KIAA1853 ENSG00000139767 12 119419396 119600857 q24.23 ov108,ov66 2 HSPB8 ENSG00000152137 12 119616595 119632550 q24.23 ov108,ov66 2 CCDC60 ENSG00000183273 12 119772517 119978851 q24.23 ov108,ov66 2 PRKAB1 ENSG00000111725 12 120105761 120119416 q24.23 ov108,ov66 2 CIT ENSG00000122966 12 120123598 120315092 q24.23 ov108,ov66 2 NCOR2 ENSG00000196498 12 124808961 125052010 q24.31 ov108,ov66 2 SCARB1 ENSG00000073060 12 125262186 125348519 q24.31 ov108,ov66 2 UBC ENSG00000150991 12 125396194 125399577 q24.31 ov108,ov66 2 DHX37 ENSG00000150990 12 125431373 125473667 q24.31 ov108,ov66 2 BRI3BP ENSG00000184992 12 125478251 125511045 q24.31 ov108,ov66 2 AACS ENSG00000081760 12 125549925 125627871 q24.31 ov108,ov66 2 OR4H12P ENSG00000176312 14 20228069 20228947 q11.2 ov14,ov40 2 OR4M1 ENSG00000176299 14 20248401 20249516 q11.2 ov14,ov40 2 OR4N2 ENSG00000176294 14 20295608 20296531 q11.2 ov14,ov40 2 OR4K2 ENSG00000165762 14 20344391 20345468 q11.2 ov14,ov40 2 OR4K5 ENSG00000176281 14 20388741 20389818 q11.2 ov14,ov40 2 OR4K1 ENSG00000155249 14 20403767 20404842 q11.2 ov14,ov40 2 ZNF267 ENSG00000185947 16 31885079 31928622 p11.2 ov33,ov51 2 IGHV2OR16-5 ENSG00000214618 16 32859019 32859503 p11.1 ov33,ov51 2 CDH13 ENSG00000140945 16 82882260 83830204 q23.3 ov61,ov80 2 HSBP1 ENSG00000230989 16 83841593 83846594 q23.3 ov61,ov80 2 MLYCD ENSG00000103150 16 83932730 83949785 q23.3 ov61,ov80 2 OSGIN1 ENSG00000140961 16 83982672 83999937 q23.3 ov61,ov80 2 NECAB2 ENSG00000103154 16 84002237 84036377 q23.3 ov61,ov80 2 SLC38A8 ENSG00000166558 16 84043389 84075762 q23.3 ov61,ov80 2 MBTPS1 ENSG00000140943 16 84087371 84150517 q23.3 ov61,ov80 2 HSDL1 ENSG00000103160 16 84155888 84178764 q23.3 ov61,ov80 2 LRRC50 ENSG00000154099 16 84178865 84211523 q23.3 ov61,ov80 2 TAF1C ENSG00000103168 16 84211461 84220662 q24.1 ov61,ov80 2 ADAD2 ENSG00000140955 16 84224723 84230772 q24.1 ov61,ov80 2 KCNG4 ENSG00000168418 16 84255823 84273356 q24.1 ov61,ov80 2 WFDC1 ENSG00000103175 16 84328321 84363387 q24.1 ov61,ov80 2 ATP2C2 ENSG00000064270 16 84402133 84497792 q24.1 ov61,ov80 2 KIAA1609 ENSG00000140950 16 84509966 84538288 q24.1 ov61,ov80 2 COTL1 ENSG00000103187 16 84599237 84651702 q24.1 ov61,ov80 2 KLHL36 ENSG00000135686 16 84682131 84695915 q24.1 ov61,ov80 2 COX4NB ENSG00000131148 16 85812230 85833148 q24.1 ov61,ov78 2 COX4I1 ENSG00000131143 16 85833196 85840608 q24.1 ov61,ov78 2 IRF8 ENSG00000140968 16 85932774 85956209 q24.1 ov61,ov78 2 ACSF3 ENSG00000176715 16 89160254 89222169 q24.3 ov61,ov80 2 CDH15 ENSG00000129910 16 89238163 89261899 q24.3 ov61,ov80 2 ZNF778 ENSG00000170100 16 89284111 89295363 q24.3 ov61,ov80 2 ANKRD11 ENSG00000167522 16 89334035 89556969 q24.3 ov61,ov80 2 SPG7 ENSG00000197912 16 89574805 89624173 q24.3 ov61,ov80 2 RPL13 ENSG00000167526 16 89627090 89629848 q24.3 ov61,ov80 2 CPNE7 ENSG00000178773 16 89642176 89663653 q24.3 ov61,ov80 2 DPEP1 ENSG00000015413 16 89679716 89704864 q24.3 ov61,ov80 2 CHMP1A ENSG00000131165 16 89710846 89724129 q24.3 ov61,ov80 2 C16orf55 ENSG00000167523 16 89724210 89737680 q24.3 ov61,ov80 2 CDK10 ENSG00000185324 16 89753076 89762759 q24.3 ov61,ov80 2 SPATA2L ENSG00000158792 16 89762766 89768099 q24.3 ov61,ov80 2 C16orf7 ENSG00000075399 16 89773541 89787394 q24.3 ov61,ov80 2 ZNF276 ENSG00000158805 16 89787393 89807333 q24.3 ov61,ov80 2 FANCA ENSG00000187741 16 89803959 89883065 q24.3 ov61,ov80 2 SPIRE2 ENSG00000204991 16 89894907 89937727 q24.3 ov61,ov80 2 TCF25 ENSG00000141002 16 89939994 89977792 q24.3 ov61,ov80 2 TUBB3 ENSG00000198211 16 89985667 90002505 q24.3 ov61,ov80 2 DEF8 ENSG00000140995 16 90015151 90034467 q24.3 ov61,ov80 2 PIGS ENSG00000087111 17 26880405 26898887 q11.2 ov48,ov61 2 ALDOC ENSG00000109107 17 26900133 26903952 q11.2 ov48,ov61 2 SPAG5 ENSG00000076382 17 26904585 26926056 q11.2 ov48,ov61 2 KIAA0100 ENSG00000007202 17 26941459 26972173 q11.2 ov48,ov61 2 SDF2 ENSG00000132581 17 26975607 26988933 q11.2 ov48,ov61 2 SUPT6H ENSG00000109111 17 26989302 27029248 q11.2 ov48,ov61 2 PROCA1 ENSG00000167525 17 27030534 27038872 q11.2 ov48,ov61 2 RAB34 ENSG00000109113 17 27041299 27045447 q11.2 ov48,ov61 2 RPL23A ENSG00000198242 17 27047000 27051373 q11.2 ov48,ov61 2 TLCD1 ENSG00000160606 17 27051377 27053826 q11.2 ov48,ov61 2 NEK8 ENSG00000160602 17 27055832 27069784 q11.2 ov48,ov61 2 TRAF4 ENSG00000076604 17 27071023 27077976 q11.2 ov48,ov61 2 CRYBA1 ENSG00000108255 17 27573875 27581500 q11.2 ov48,ov93 2 NUFIP2 ENSG00000108256 17 27582855 27621166 q11.2 ov48,ov93 2 CORO6 ENSG00000167549 17 27941774 27949917 q11.2 ov48,ov58 2 SSH2 ENSG00000141298 17 27952965 28257018 q11.2 ov48,ov58 2 EFCAB5 ENSG00000176927 17 28256218 28435470 q11.2 ov48,ov58 2 RDM1 ENSG00000187456 17 34245070 34257780 q12 ov61,ov80 2 LYZL6 ENSG00000161572 17 34261525 34270674 q12 ov61,ov80 2 TBC1D3G ENSG00000161583 17 34797172 34808103 q12 ov61,ov80 2 ZNHIT3 ENSG00000108278 17 34842473 34851662 q12 ov61,ov80 2 PIGW ENSG00000184886 17 34890847 34895150 q12 ov61,ov80 2 COPZ2 ENSG00000005243 17 46103535 46115139 q21.32 ov58,ov61 2 NFE2L1 ENSG00000082641 17 46125686 46138906 q21.32 ov58,ov61 2 CBX1 ENSG00000108468 17 46147415 46178883 q21.32 ov58,ov61 2 SNX11 ENSG00000002919 17 46184920 46200105 q21.32 ov58,ov61 2 SKAP1 ENSG00000141293 17 46210802 46507594 q21.32 ov58,ov61 2 NGFR ENSG00000064300 17 47572655 47592357 q21.33 ov58,ov61 2 NXPH3 ENSG00000182575 17 47653298 47661172 q21.33 ov58,ov61 2 SPOP ENSG00000121067 17 47676248 47755525 q21.33 ov58,ov61 2 SLC35B1 ENSG00000121073 17 47778682 47785526 q21.33 ov58,ov61 2 FAM117A ENSG00000121104 17 47787689 47841519 q21.33 ov58,ov61 2 MYST2 ENSG00000136504 17 47866058 47906456 q21.33 ov58,ov61 2 TAC4 ENSG00000176358 17 47915671 47925379 q21.33 ov58,ov61 2 DLX4 ENSG00000108813 17 48046562 48052323 q21.33 ov58,ov61 2 DLX3 ENSG00000064195 17 48067389 48072588 q21.33 ov58,ov61 2 ITGA3 ENSG00000005884 17 48133340 48167848 q21.33 ov58,ov61 2 PDK2 ENSG00000005882 17 48172696 48188421 q21.33 ov58,ov61 2 SAMD14 ENSG00000167100 17 48188680 48207177 q21.33 ov58,ov61 2 PPP1R9B ENSG00000108819 17 48211104 48227877 q21.33 ov58,ov61 2 SGCA ENSG00000108823 17 48243366 48253292 q21.33 ov58,ov61 2 HILS1 ENSG00000188662 17 48248874 48249837 q21.33 ov58,ov61 2 COL1A1 ENSG00000108821 17 48261457 48279000 q21.33 ov58,ov61 2 TMEM92 ENSG00000167105 17 48351833 48358844 q21.33 ov58,ov61 2 XYLT2 ENSG00000015532 17 48423393 48438512 q21.33 ov58,ov61 2 MRPL27 ENSG00000108826 17 48445231 48450562 q21.33 ov58,ov61 2 EME1 ENSG00000154920 17 48450590 48458818 q21.33 ov58,ov61 2 LRRC59 ENSG00000108829 17 48458600 48474832 q21.33 ov58,ov61 2 ANKFN1 ENSG00000153930 17 54230836 54560007 q22 ov44,ov61 2 NOG ENSG00000183691 17 54671060 54672951 q22 ov44,ov61 2 SFRS1 ENSG00000136450 17 56078284 56084707 q22 ov61,ov99 2 DYNLL2 ENSG00000121083 17 56160799 56166811 q22 ov61,ov99 2 OR4D1 ENSG00000141194 17 56232494 56233517 q22 ov61,ov99 2 OR4D2 ENSG00000153951 17 56246762 56248690 q22 ov61,ov99 2 EPX ENSG00000121053 17 56270122 56282525 q22 ov61,ov99 2 MKS1 ENSG00000011143 17 56282799 56296666 q22 ov61,ov99 2 LPO ENSG00000167419 17 56315848 56345879 q22 ov61,ov99 2 MPO ENSG00000005381 17 56347217 56358296 q22 ov61,ov99 2 BZRAP1 ENSG00000005379 17 56378598 56406152 q22 ov61,ov99 2 SUPT4H1 ENSG00000213246 17 56422539 56429563 q22 ov61,ov99 2 RNF43 ENSG00000108375 17 56429861 56494480 q22 ov61,ov99 2 HSF5 ENSG00000176160 17 56497529 56565759 q22 ov61,ov99 2 MTMR4 ENSG00000108389 17 56566893 56595251 q22 ov61,ov99 2 38231 ENSG00000108387 17 56597616 56616574 q22 ov61,ov99 2 C17orf47 ENSG00000181013 17 56618948 56621683 q22 ov61,ov99 2 TEX14 ENSG00000121101 17 56634042 56769416 q22 ov61,ov99 2 GDPD1 ENSG00000153982 17 57297834 57352559 q22 ov61,ov99 2 YPEL2 ENSG00000175155 17 57409053 57479095 q22 ov61,ov99 2 TUBD1 ENSG00000108423 17 57936851 57970296 q23.1 ov58,ov61 2 BRIP1 ENSG00000136492 17 59759985 59940755 q23.2 ov108,ov61 2 MED13 ENSG00000108510 17 60019967 60142643 q23.2 ov108,ov61 2 TBC1D3P2 ENSG00000188755 17 60342069 60352988 q23.2 ov108,ov61 2 EFCAB3 ENSG00000172421 17 60447579 60493840 q23.2 ov108,ov61 2 METTL2A ENSG00000087995 17 60501246 60527454 q23.2 ov108,ov61 2 TLK2 ENSG00000146872 17 60556386 60692839 q23.2 ov108,ov61 2 Supplementary Table 2 Page 12
MRC2 ENSG00000011028 17 60704762 60770953 q23.2 ov108,ov61 2 40238 ENSG00000173838 17 60778676 60885705 q23.2 ov108,ov61 2 PLEKHM1P ENSG00000159266 17 62781407 62797036 q24.1 ov108,ov61 2 LRRC37A3 ENSG00000176809 17 62850482 62893778 q24.1 ov108,ov61 2 AXIN2 ENSG00000168646 17 63524685 63557765 q24.1 ov108,ov61 2 PSMD12 ENSG00000197170 17 65336619 65362721 q24.2 ov61,ov99 2 PITPNC1 ENSG00000154217 17 65373924 65689645 q24.2 ov61,ov99 2 AMZ2 ENSG00000196704 17 66244145 66265039 q24.2 ov108,ov61 2 SLC16A6 ENSG00000108932 17 66264338 66287407 q24.2 ov108,ov61 2 SOX9 ENSG00000125398 17 70117161 70122552 q24.3 ov108,ov61 2 BAHCC1 ENSG00000171282 17 79373540 79433358 q25.3 ov33,ov58 2 ACTG1 ENSG00000184009 17 79476999 79479827 q25.3 ov33,ov58 2 FSCN2 ENSG00000186765 17 79495417 79504155 q25.3 ov33,ov58 2 C17orf70 ENSG00000185504 17 79506912 79519426 q25.3 ov33,ov58 2 NPLOC4 ENSG00000182446 17 79523915 79604138 q25.3 ov33,ov58 2 TSPAN10 ENSG00000182612 17 79609349 79615779 q25.3 ov33,ov58 2 PDE6G ENSG00000185527 17 79617489 79623633 q25.3 ov33,ov58 2 C17orf90 ENSG00000204237 17 79632067 79633618 q25.3 ov33,ov58 2 CCDC137 ENSG00000185298 17 79633761 79640937 q25.3 ov33,ov58 2 ARL16 ENSG00000214087 17 79648250 79650954 q25.3 ov33,ov58 2 HGS ENSG00000185359 17 79651020 79669149 q25.3 ov33,ov58 2 MRPL12 ENSG00000183093 17 79670407 79674546 q25.3 ov33,ov58 2 SLC25A10 ENSG00000183048 17 79679337 79688041 q25.3 ov33,ov58 2 GCGR ENSG00000215644 17 79762026 79771889 q25.3 ov33,ov58 2 DYSFIP1 ENSG00000182676 17 79791368 79792926 q25.3 ov33,ov58 2 P4HB ENSG00000185624 17 79801034 79818544 q25.3 ov33,ov58 2 ARHGDIA ENSG00000141522 17 79825598 79829238 q25.3 ov33,ov58 2 THOC4 ENSG00000183684 17 79845721 79849462 q25.3 ov33,ov58 2 ANAPC11 ENSG00000141552 17 79849599 79858363 q25.3 ov33,ov58 2 NPB ENSG00000183979 17 79860072 79860737 q25.3 ov33,ov58 2 PCYT2 ENSG00000185813 17 79862092 79869294 q25.3 ov33,ov58 2 SIRT7 ENSG00000187531 17 79869815 79876040 q25.3 ov33,ov58 2 MAFG ENSG00000197063 17 79876149 79885588 q25.3 ov33,ov58 2 PYCR1 ENSG00000183010 17 79890269 79895172 q25.3 ov33,ov58 2 MYADML2 ENSG00000185105 17 79897521 79905109 q25.3 ov33,ov58 2 NOTUM ENSG00000185269 17 79910399 79919716 q25.3 ov33,ov58 2 CABLES1 ENSG00000134508 18 20715727 20840434 q11.2 ov11,ov99 2 C18orf45 ENSG00000134490 18 20875977 21017925 q11.2 ov11,ov99 2 RIOK3 ENSG00000101782 18 21032787 21063101 q11.2 ov11,ov99 2 C18orf8 ENSG00000141452 18 21083462 21111746 q11.2 ov11,ov99 2 CABYR ENSG00000154040 18 21718955 21741564 q11.2 ov11,ov99 2 OSBPL1A ENSG00000141447 18 21742013 21977790 q11.2 ov11,ov99 2 IMPACT ENSG00000154059 18 22006609 22033492 q11.2 ov11,ov99 2 HRH4 ENSG00000134489 18 22040593 22059920 q11.2 ov11,ov99 2 ZNF521 ENSG00000198795 18 22641888 22932214 q11.2 ov11,ov99 2 SS18 ENSG00000141380 18 23596219 23670611 q11.2 ov11,ov99 2 PSMA8 ENSG00000154611 18 23713816 23773319 q11.2 ov11,ov99 2 TAF4B ENSG00000141384 18 23806409 23971642 q11.2 ov11,ov99 2 KCTD1 ENSG00000134504 18 24034877 24209206 q11.2 ov11,ov99 2 AQP4 ENSG00000171885 18 24432010 24445716 q11.2 ov11,ov99 2 CHST9 ENSG00000154080 18 24486446 24765289 q11.2 ov11,ov99 2 CDH2 ENSG00000170558 18 25530930 25757445 q12.1 ov11,ov99 2 DOT1L ENSG00000104885 19 2164148 2232576 p13.3 ov58,ov61 2 PLEKHJ1 ENSG00000104886 19 2233155 2236319 p13.3 ov58,ov61 2 SF3A2 ENSG00000104897 19 2236816 2248677 p13.3 ov58,ov61 2 AMH ENSG00000104899 19 2249113 2252072 p13.3 ov58,ov61 2 JSRP1 ENSG00000167476 19 2252252 2255346 p13.3 ov58,ov61 2 OAZ1 ENSG00000104904 19 2269598 2273107 p13.3 ov58,ov61 2 C19orf35 ENSG00000188305 19 2274631 2282181 p13.3 ov58,ov61 2 LINGO3 ENSG00000220008 19 2289774 2308156 p13.3 ov58,ov61 2 LSM7 ENSG00000130332 19 2321522 2328614 p13.3 ov58,ov61 2 TMPRSS9 ENSG00000178297 19 2389784 2426086 p13.3 ov58,ov61 2 TIMM13 ENSG00000099800 19 2425630 2427875 p13.3 ov58,ov61 2 LMNB2 ENSG00000176619 19 2428165 2456958 p13.3 ov58,ov61 2 GADD45B ENSG00000099860 19 2476135 2478257 p13.3 ov58,ov61 2 DOHH ENSG00000129932 19 3490820 3500938 p13.3 ov102,ov61 2 RAX2 ENSG00000173976 19 3497813 3772221 p13.3 ov102,ov61 2 FZR1 ENSG00000105325 19 3506295 3538325 p13.3 ov102,ov61 2 C19orf28 ENSG00000161091 19 3538263 3557571 p13.3 ov102,ov61 2 C19orf71 ENSG00000183397 19 3539155 3544028 p13.3 ov102,ov61 2 HMG20B ENSG00000064961 19 3572775 3579081 p13.3 ov102,ov61 2 GIPC3 ENSG00000179855 19 3585569 3590434 p13.3 ov102,ov61 2 C19orf64 ENSG00000227654 19 3591507 3593538 p13.3 ov102,ov61 2 TBXA2R ENSG00000006638 19 3594504 3606658 p13.3 ov102,ov61 2 C19orf29OS ENSG00000226800 19 3607245 3614445 p13.3 ov102,ov61 2 PIP5K1C ENSG00000186111 19 3630182 3700445 p13.3 ov102,ov61 2 TJP3 ENSG00000105289 19 3721735 3750807 p13.3 ov102,ov61 2 APBA3 ENSG00000011132 19 3750771 3761673 p13.3 ov102,ov61 2 MRPL54 ENSG00000183617 19 3762665 3767562 p13.3 ov102,ov61 2 MATK ENSG00000007264 19 3777968 3801810 p13.3 ov102,ov61 2 ZFR2 ENSG00000105278 19 3804022 3869027 p13.3 ov102,ov61 2 PTPRS ENSG00000105426 19 5205519 5340814 p13.3 ov102,ov61 2 ZNRF4 ENSG00000105428 19 5455426 5456867 p13.3 ov102,ov61 2 SAFB2 ENSG00000130254 19 5587011 5622938 p13.3 ov102,ov61 2 SAFB ENSG00000160633 19 5623150 5668477 p13.3 ov102,ov61 2 C19orf70 ENSG00000174917 19 5678433 5680911 p13.3 ov102,ov61 2 HSD11B1L ENSG00000167733 19 5681035 5688532 p13.3 ov102,ov61 2 RPL36 ENSG00000130255 19 5690272 5691674 p13.3 ov102,ov61 2 LONP1 ENSG00000196365 19 5691845 5720176 p13.3 ov102,ov61 2 TMEM146 ENSG00000174898 19 5720688 5778739 p13.3 ov102,ov61 2 DUS3L ENSG00000141994 19 5785151 5791194 p13.3 ov102,ov61 2 NRTN ENSG00000171119 19 5823818 5828334 p13.3 ov102,ov61 2 FUT6 ENSG00000156413 19 5830637 5839742 p13.3 ov102,ov61 2 FUT3 ENSG00000171124 19 5842900 5851485 p13.3 ov102,ov61 2 FUT5 ENSG00000130383 19 5865837 5867752 p13.3 ov102,ov61 2 NDUFA11 ENSG00000174886 19 5891287 5904025 p13.3 ov102,ov61 2 CAPS ENSG00000105519 19 5911386 5916219 p13.3 ov102,ov61 2 RANBP3 ENSG00000031823 19 5916154 5978320 p13.3 ov102,ov61 2 RFX2 ENSG00000087903 19 5993175 6110664 p13.3 ov102,ov61 2 ACSBG2 ENSG00000130377 19 6135710 6193112 p13.3 ov102,ov61 2 MLLT1 ENSG00000130382 19 6212966 6279959 p13.3 ov102,ov61 2 ACER1 ENSG00000167769 19 6306510 6333640 p13.3 ov102,ov61 2 CLPP ENSG00000125656 19 6361463 6368915 p13.3 ov102,ov61 2 ALKBH7 ENSG00000125652 19 6372444 6375040 p13.3 ov102,ov61 2 PSPN ENSG00000125650 19 6375305 6375860 p13.3 ov102,ov61 2 GTF2F1 ENSG00000125651 19 6379580 6393291 p13.3 ov102,ov61 2 KHSRP ENSG00000088247 19 6413121 6424822 p13.3 ov102,ov61 2 SLC25A41 ENSG00000181240 19 6426050 6433790 p13.3 ov102,ov61 2 SLC25A23 ENSG00000125648 19 6436093 6459781 p13.3 ov102,ov61 2 CRB3 ENSG00000130545 19 6464260 6467225 p13.3 ov102,ov61 2 DENND1C ENSG00000205744 19 6467219 6481798 p13.3 ov102,ov61 2 TUBB4 ENSG00000104833 19 6494331 6502330 p13.3 ov102,ov61 2 TNFSF9 ENSG00000125657 19 6531010 6535939 p13.3 ov102,ov61 2 CD70 ENSG00000125726 19 6583311 6591163 p13.3 ov102,ov61 2 TNFSF14 ENSG00000125735 19 6664568 6670599 p13.3 ov102,ov61 2 C3 ENSG00000125730 19 6677846 6720662 p13.3 ov102,ov61 2 GPR108 ENSG00000125734 19 6729925 6737633 p13.3 ov102,ov61 2 TRIP10 ENSG00000125733 19 6739707 6751526 p13.3 ov102,ov61 2 SH2D3A ENSG00000125731 19 6752211 6767599 p13.3 ov102,ov61 2 VAV1 ENSG00000141968 19 6772722 6857371 p13.3 ov102,ov61 2 EMR1 ENSG00000174837 19 6887582 6940463 p13.3 ov102,ov61 2 EMR4P ENSG00000186629 19 6957004 6990857 p13.2 ov102,ov61 2 MBD3L2 ENSG00000230522 19 7049350 7051781 p13.2 ov102,ov61 2 ZNF557 ENSG00000130544 19 7069471 7087979 p13.2 ov102,ov61 2 INSR ENSG00000171105 19 7112266 7294011 p13.2 ov102,ov61 2 ARHGEF18 ENSG00000104880 19 7459999 7537370 p13.2 ov102,ov61 2 PEX11G ENSG00000104883 19 7541761 7553905 p13.2 ov102,ov61 2 C19orf45 ENSG00000198723 19 7557862 7573336 p13.2 ov102,ov61 2 ZNF358 ENSG00000198816 19 7581004 7585912 p13.2 ov102,ov61 2 MCOLN1 ENSG00000090674 19 7587514 7598868 p13.2 ov102,ov61 2 PNPLA6 ENSG00000032444 19 7599043 7626652 p13.2 ov102,ov61 2 KIAA1543 ENSG00000076826 19 7660788 7683194 p13.2 ov102,ov61 2 XAB2 ENSG00000076924 19 7684412 7694439 p13.2 ov102,ov61 2 PCP2 ENSG00000174788 19 7696509 7698636 p13.2 ov102,ov61 2 STXBP2 ENSG00000076944 19 7701991 7712758 p13.2 ov102,ov61 2 RETN ENSG00000104918 19 7733972 7735340 p13.2 ov102,ov61 2 C19orf59 ENSG00000183019 19 7741514 7744708 p13.2 ov102,ov61 2 TRAPPC5 ENSG00000181029 19 7745707 7747748 p13.2 ov102,ov61 2 FCER2 ENSG00000104921 19 7753663 7766997 p13.2 ov102,ov61 2 CLEC4G ENSG00000182566 19 7793844 7797057 p13.2 ov102,ov61 2 CD209 ENSG00000090659 19 7804879 7812464 p13.2 ov102,ov61 2 CLEC4M ENSG00000104938 19 7828035 7834490 p13.2 ov102,ov61 2 EVI5L ENSG00000142459 19 7895243 7929861 p13.2 ov102,ov61 2 LRRC8E ENSG00000171017 19 7953390 7966906 p13.2 ov102,ov61 2 MAP2K7 ENSG00000076984 19 7968765 7979362 p13.2 ov102,ov61 2 SNAPC2 ENSG00000104976 19 7985229 7998843 p13.2 ov102,ov61 2 CTXN1 ENSG00000178531 19 7989372 7991051 p13.2 ov102,ov61 2 TIMM44 ENSG00000104980 19 7991604 8008538 p13.2 ov102,ov61 2 ELAVL1 ENSG00000066044 19 8023458 8070529 p13.2 ov102,ov61 2 CCL25 ENSG00000131142 19 8117651 8127547 p13.2 ov102,ov61 2 FBN3 ENSG00000142449 19 8130287 8212650 p13.2 ov102,ov61 2 LASS4 ENSG00000090661 19 8274228 8327305 p13.2 ov102,ov61 2 CD320 ENSG00000167775 19 8367011 8373239 p13.2 ov102,ov61 2 NDUFA7 ENSG00000167774 19 8376234 8386280 p13.2 ov102,ov61 2 RPS28P9 ENSG00000233927 19 8386384 8387376 p13.2 ov102,ov61 2 KANK3 ENSG00000186994 19 8387469 8408146 p13.2 ov102,ov61 2 ANGPTL4 ENSG00000167772 19 8429011 8439257 p13.2 ov102,ov61 2 RAB11B ENSG00000185236 19 8455205 8469313 p13.2 ov102,ov61 2 37316 ENSG00000099785 19 8478187 8503895 p13.2 ov102,ov61 2 HNRNPM ENSG00000099783 19 8509651 8553885 p13.2 ov102,ov61 2 PRAM1 ENSG00000133246 19 8554941 8567522 p13.2 ov102,ov61 2 ZNF414 ENSG00000133250 19 8575575 8579032 p13.2 ov102,ov61 2 MYO1F ENSG00000142347 19 8585689 8642461 p13.2 ov102,ov61 2 ADAMTS10 ENSG00000142303 19 8645126 8673183 p13.2 ov102,ov61 2 C19orf66 ENSG00000130813 19 10196806 10203927 p13.2 ov31,ov61 2 ANGPTL6 ENSG00000130812 19 10203015 10213472 p13.2 ov31,ov61 2 PPAN ENSG00000130810 19 10216899 10226065 p13.2 ov31,ov61 2 EIF3G ENSG00000130811 19 10225690 10230599 p13.2 ov31,ov61 2 DNMT1 ENSG00000130816 19 10244023 10305755 p13.2 ov31,ov61 2 S1PR2 ENSG00000175898 19 10332109 10341948 p13.2 ov31,ov61 2 MRPL4 ENSG00000105364 19 10362640 10370736 p13.2 ov31,ov61 2 ICAM1 ENSG00000090339 19 10381517 10397291 p13.2 ov31,ov61 2 ICAM4 ENSG00000105371 19 10397650 10399198 p13.2 ov31,ov61 2 ICAM5 ENSG00000105376 19 10400655 10407452 p13.2 ov31,ov61 2 FDX1L ENSG00000167807 19 10416103 10426691 p13.2 ov31,ov61 2 RAVER1 ENSG00000161847 19 10426895 10444314 p13.2 ov31,ov61 2 ICAM3 ENSG00000076662 19 10444454 10450345 p13.2 ov31,ov61 2 TYK2 ENSG00000105397 19 10461205 10489184 p13.2 ov31,ov61 2 CDC37 ENSG00000105401 19 10501809 10514271 p13.2 ov31,ov61 2 PDE4A ENSG00000065989 19 10527619 10580305 p13.2 ov31,ov61 2 KEAP1 ENSG00000079999 19 10596796 10614054 p13.2 ov31,ov61 2 S1PR5 ENSG00000180739 19 10623622 10628127 p13.2 ov31,ov61 2 ATG4D ENSG00000130734 19 10654593 10664093 p13.2 ov31,ov61 2 KRI1 ENSG00000129347 19 10663761 10676707 p13.2 ov31,ov61 2 CDKN2D ENSG00000129355 19 10677139 10679655 p13.2 ov31,ov61 2 AP1M2 ENSG00000129354 19 10683347 10697991 p13.2 ov31,ov61 2 SLC44A2 ENSG00000129353 19 10736229 10755232 p13.2 ov31,ov61 2 ILF3 ENSG00000129351 19 10764937 10803093 p13.2 ov31,ov61 2 QTRT1 ENSG00000213339 19 10812112 10824040 p13.2 ov31,ov61 2 HOOK2 ENSG00000095066 19 12873817 12886434 p13.2 ov102,ov61 2 JUNB ENSG00000171223 19 12902310 12904124 p13.2 ov102,ov61 2 PRDX2 ENSG00000167815 19 12907635 12912694 p13.2 ov102,ov61 2 RNASEH2A ENSG00000104889 19 12917428 12924462 p13.2 ov102,ov61 2 RTBDN ENSG00000132026 19 12936297 12946230 p13.2 ov102,ov61 2 MAST1 ENSG00000105613 19 12949348 12985765 p13.2 ov102,ov61 2 DNASE2 ENSG00000105612 19 12986023 12992335 p13.2 ov102,ov61 2 EMR3 ENSG00000131355 19 14730052 14785730 p13.12 ov29,ov61 2 ZNF333 ENSG00000160961 19 14800870 14831772 p13.12 ov29,ov61 2 EMR2 ENSG00000127507 19 14843205 14889353 p13.12 ov29,ov61 2 OR7C1 ENSG00000127530 19 14909986 14910948 p13.12 ov29,ov61 2 OR7A5 ENSG00000188269 19 14938094 14945960 p13.12 ov29,ov61 2 OR7A10 ENSG00000127515 19 14951760 14952689 p13.12 ov29,ov61 2 OR7A2P ENSG00000172148 19 14974598 14975527 p13.12 ov29,ov61 2 OR7A17 ENSG00000185385 19 14991238 14992167 p13.12 ov29,ov61 2 OR7C2 ENSG00000127529 19 15052301 15053260 p13.12 ov29,ov61 2 SLC1A6 ENSG00000105143 19 15060991 15087839 p13.12 ov29,ov61 2 CCDC105 ENSG00000160994 19 15121539 15134083 p13.12 ov29,ov61 2 CASP14 ENSG00000105141 19 15160195 15169104 p13.12 ov29,ov61 2 OR1I1 ENSG00000094661 19 15197791 15199032 p13.12 ov29,ov61 2 SYDE1 ENSG00000105137 19 15218214 15225789 p13.12 ov29,ov61 2 ILVBL ENSG00000105135 19 15225789 15236577 p13.12 ov29,ov61 2 NOTCH3 ENSG00000074181 19 15270445 15311792 p13.12 ov29,ov61 2 EPHX3 ENSG00000105131 19 15337730 15343858 p13.12 ov29,ov61 2 BRD4 ENSG00000141867 19 15348301 15391262 p13.12 ov29,ov61 2 AKAP8 ENSG00000105127 19 15464341 15490603 p13.12 ov29,ov61 2 AKAP8L ENSG00000011243 19 15490859 15529833 p13.12 ov29,ov61 2 WIZ ENSG00000011451 19 15532319 15560762 p13.12 ov29,ov61 2 RASAL3 ENSG00000105122 19 15562438 15575382 p13.12 ov29,ov61 2 PGLYRP2 ENSG00000161031 19 15579459 15590663 p13.12 ov29,ov61 2 CYP4F22 ENSG00000171954 19 15636144 15663127 p13.12 ov29,ov61 2 CPAMD8 ENSG00000160111 19 17003758 17137625 p13.11 ov61,ov80 2 HAUS8 ENSG00000131351 19 17160573 17186343 p13.11 ov61,ov80 2 MYO9B ENSG00000099331 19 17212466 17324103 p13.11 ov61,ov80 2 USE1 ENSG00000053501 19 17326155 17330638 p13.11 ov61,ov80 2 OCEL1 ENSG00000099330 19 17337055 17340027 p13.11 ov61,ov80 2 NR2F6 ENSG00000160113 19 17342694 17356151 p13.11 ov61,ov80 2 USHBP1 ENSG00000130307 19 17360838 17375573 p13.11 ov61,ov80 2 ANKLE1 ENSG00000160117 19 17392454 17398455 p13.11 ov61,ov80 2 ABHD8 ENSG00000127220 19 17402941 17414282 p13.11 ov61,ov80 2 MRPL34 ENSG00000130312 19 17416477 17417652 p13.11 ov61,ov80 2 DDA1 ENSG00000130311 19 17420337 17434094 p13.11 ov61,ov80 2 ANO8 ENSG00000074855 19 17434034 17445638 p13.11 ov61,ov80 2 GTPBP3 ENSG00000130299 19 17448356 17453539 p13.11 ov61,ov80 2 PLVAP ENSG00000130300 19 17462264 17488159 p13.11 ov61,ov80 2 BST2 ENSG00000130303 19 17502497 17516457 p13.11 ov61,ov80 2 FAM125A ENSG00000141971 19 17530856 17536140 p13.11 ov61,ov80 2 TMEM221 ENSG00000188051 19 17547453 17559271 p13.11 ov61,ov80 2 NXNL1 ENSG00000171773 19 17566236 17571725 p13.11 ov61,ov80 2 SLC27A1 ENSG00000130304 19 17579578 17616977 p13.11 ov61,ov80 2 PGLS ENSG00000130313 19 17622432 17632095 p13.11 ov61,ov80 2 FAM129C ENSG00000167483 19 17634110 17664647 p13.11 ov61,ov80 2 GLT25D1 ENSG00000130309 19 17666460 17693965 p13.11 ov61,ov80 2 TSHZ3 ENSG00000121297 19 31765855 31840190 q12 ov40,ov45 2 ZNF507 ENSG00000168813 19 32836514 32878572 q13.11 ov40,ov55 2 DPY19L3 ENSG00000178904 19 32896696 32975236 q13.11 ov40,ov55 2 PDCD5 ENSG00000105185 19 33072104 33078322 q13.11 ov40,ov55 2 ANKRD27 ENSG00000105186 19 33087907 33166102 q13.11 ov40,ov55 2 RGS9BP ENSG00000186326 19 33166313 33169206 q13.11 ov40,ov55 2 NUDT19 ENSG00000213965 19 33182867 33204701 q13.11 ov40,ov55 2 TDRD12 ENSG00000173809 19 33210679 33312089 q13.11 ov40,ov55 2 SLC7A9 ENSG00000021488 19 33321421 33360683 q13.11 ov40,ov55 2 CCDC123 ENSG00000121289 19 33369908 33462869 q13.11 ov40,ov55 2 C19orf40 ENSG00000131944 19 33463148 33467946 q13.11 ov40,ov55 2 RHPN2 ENSG00000131941 19 33469499 33555794 q13.11 ov40,ov55 2 GPATCH1 ENSG00000076650 19 33571786 33621318 q13.11 ov40,ov55 2 WDR88 ENSG00000166359 19 33622998 33666705 q13.11 ov40,ov55 2 LRP3 ENSG00000130881 19 33685166 33699773 q13.11 ov40,ov55 2 SLC7A10 ENSG00000130876 19 33699570 33716756 q13.11 ov40,ov55 2 Supplementary Table 2 Page 13
CEBPG ENSG00000153879 19 33864609 33873591 q13.11 ov40,ov55 2 LSM14A ENSG00000105216 19 34663352 34720420 q13.11 ov11,ov40 2 KIAA0355 ENSG00000166398 19 34745456 34846471 q13.11 ov11,ov40 2 GPI ENSG00000105220 19 34855815 34891236 q13.11 ov11,ov40 2 ZNF616 ENSG00000204611 19 52617654 52643191 q13.41 ov11,ov40 2 ZNF836 ENSG00000196267 19 52658125 52674896 q13.41 ov11,ov40 2 PPP2R1A ENSG00000105568 19 52693191 52729670 q13.41 ov11,ov40 2 ZNF766 ENSG00000196214 19 52772824 52795976 q13.41 ov11,ov40 2 ZNF480 ENSG00000198464 19 52800425 52829163 q13.41 ov11,ov40 2 ZNF610 ENSG00000167554 19 52839561 52870366 q13.41 ov11,ov40 2 ZNF528 ENSG00000167555 19 52901102 52921656 q13.41 ov11,ov40 2 ZNF534 ENSG00000198633 19 52932440 52955568 q13.41 ov11,ov40 2 ZNF808 ENSG00000198482 19 53030909 53059303 q13.41 ov11,ov40 2 ZNF701 ENSG00000167562 19 53073528 53088049 q13.41 ov11,ov40 2 ZNF137 ENSG00000123870 19 53095291 53103405 q13.41 ov11,ov40 2 ZNF83 ENSG00000167766 19 53115620 53141644 q13.41 ov11,ov40 2 ZNF611 ENSG00000213020 19 53207472 53233135 q13.41 ov11,ov40 2 ZNF600 ENSG00000189190 19 53267471 53290016 q13.41 ov11,ov40 2 ZNF665 ENSG00000197497 19 53666552 53696619 q13.42 ov11,ov40 2 ZNF818P ENSG00000204597 19 53716228 53719348 q13.42 ov11,ov40 2 ZNF677 ENSG00000197928 19 53731577 53758126 q13.42 ov11,ov40 2 VN1R2 ENSG00000196131 19 53760796 53762855 q13.42 ov11,ov40 2 VN1R4 ENSG00000174677 19 53770013 53770918 q13.42 ov11,ov40 2 ZNF525 ENSG00000203326 19 53884679 53885272 q13.42 ov11,ov40 2 ZNF765 ENSG00000196417 19 53898397 53915262 q13.42 ov11,ov40 2 ZNF761 ENSG00000160336 19 53935227 53961515 q13.42 ov11,ov40 2 ZNF813 ENSG00000198346 19 53970989 53997546 q13.42 ov11,ov40 2 ZNF331 ENSG00000130844 19 54024177 54083523 q13.42 ov11,ov40 2 DPRX ENSG00000204595 19 54135310 54140263 q13.42 ov11,ov40 2 NLRP12 ENSG00000142405 19 54296857 54327648 q13.42 ov11,ov40 2 MYADM ENSG00000179820 19 54369477 54379682 q13.42 ov11,ov40 2 PRKCG ENSG00000126583 19 54385467 54410901 q13.42 ov11,ov40 2 CACNG7 ENSG00000105605 19 54412589 54447195 q13.42 ov11,ov40 2 CACNG8 ENSG00000142408 19 54466294 54486139 q13.42 ov11,ov40 2 CACNG6 ENSG00000130433 19 54495542 54515918 q13.42 ov11,ov40 2 VSTM1 ENSG00000189068 19 54544079 54567207 q13.42 ov11,ov40 2 ZNF671 ENSG00000083814 19 58231120 58238995 q13.43 ov11,ov40 2 ZNF776 ENSG00000152443 19 58258164 58269527 q13.43 ov11,ov40 2 ZNF586 ENSG00000083828 19 58281025 58291984 q13.43 ov11,ov40 2 ZNF418 ENSG00000196724 19 58296821 58446740 q13.43 ov11,ov40 2 ZNF552 ENSG00000235423 19 58301639 58320617 q13.43 ov11,ov40 2 ZNF587 ENSG00000198466 19 58361228 58376487 q13.43 ov11,ov40 2 ZNF814 ENSG00000204514 19 58380747 58400442 q13.43 ov11,ov40 2 ZNF417 ENSG00000173480 19 58417142 58427978 q13.43 ov11,ov40 2 ZNF256 ENSG00000152454 19 58452206 58459077 q13.43 ov11,ov40 2 C19orf18 ENSG00000177025 19 58469807 58485904 q13.43 ov11,ov40 2 ZNF606 ENSG00000166704 19 58488449 58514714 q13.43 ov11,ov40 2 ZSCAN1 ENSG00000152467 19 58545400 58565999 q13.43 ov11,ov40 2 ZNF135 ENSG00000176293 19 58570607 58580771 q13.43 ov11,ov40 2 ZSCAN18 ENSG00000121413 19 58595210 58629793 q13.43 ov11,ov40 2 ZNF329 ENSG00000181894 19 58637697 58662148 q13.43 ov11,ov40 2 ZNF274 ENSG00000171606 19 58694396 58724927 q13.43 ov11,ov40 2 ZNF544 ENSG00000198131 19 58740070 58775010 q13.43 ov11,ov40 2 ZNF8 ENSG00000083842 19 58790318 58807254 q13.43 ov11,ov40 2 ZSCAN22 ENSG00000182318 19 58838385 58853695 q13.43 ov11,ov40 2 A1BG ENSG00000121410 19 58858172 58864865 q13.43 ov11,ov40 2 ZNF497 ENSG00000174586 19 58865725 58874120 q13.43 ov11,ov40 2 ZNF837 ENSG00000152475 19 58878993 58892389 q13.43 ov11,ov40 2 RPS5 ENSG00000083845 19 58898636 58906170 q13.43 ov11,ov40 2 ZNF324B ENSG00000171574 19 58920063 58969199 q13.43 ov11,ov40 2 ZNF132 ENSG00000131849 19 58944182 58951589 q13.43 ov11,ov40 2 ZNF324 ENSG00000083812 19 58978463 58984765 q13.43 ov11,ov40 2 ZNF446 ENSG00000083838 19 58987795 58992591 q13.43 ov11,ov40 2 SLC27A5 ENSG00000083807 19 59009704 59023432 q13.43 ov11,ov40 2 ZBTB45 ENSG00000119574 19 59024899 59030921 q13.43 ov11,ov40 2 TRIM28 ENSG00000130726 19 59055836 59062082 q13.43 ov11,ov40 2 CHMP2A ENSG00000130724 19 59062934 59066486 q13.43 ov11,ov40 2 UBE2M ENSG00000130725 19 59067080 59070343 q13.43 ov11,ov40 2 MZF1 ENSG00000099326 19 59073285 59084942 q13.43 ov11,ov40 2 NRSN2 ENSG00000125841 20 327370 335511 p13 ov11,ov80 2 TRIB3 ENSG00000101255 20 361308 378197 p13 ov11,ov80 2 RBCK1 ENSG00000125826 20 388142 411610 p13 ov11,ov80 2 TBC1D20 ENSG00000125875 20 416124 443187 p13 ov11,ov80 2 CSNK2A1 ENSG00000101266 20 459307 524482 p13 ov11,ov80 2 TCF15 ENSG00000125878 20 584441 590953 p13 ov11,ov80 2 SRXN1 ENSG00000172070 20 627270 633890 p13 ov11,ov80 2 SCRT2 ENSG00000215397 20 642241 656823 p13 ov11,ov80 2 TMC2 ENSG00000149488 20 2517253 2622430 p13 ov11,ov80 2 NOP56 ENSG00000101361 20 2633178 2638976 p13 ov11,ov80 2 IDH3B ENSG00000101365 20 2639041 2644843 p13 ov11,ov80 2 EBF4 ENSG00000088881 20 2673480 2740753 p13 ov11,ov80 2 C20orf194 ENSG00000088854 20 3229948 3388255 p13 ov48,ov80 2 ATRN ENSG00000088812 20 3451665 3631760 p13 ov48,ov80 2 GFRA4 ENSG00000125861 20 3639939 3644046 p13 ov48,ov80 2 ADAM33 ENSG00000149451 20 3648621 3662750 p13 ov48,ov80 2 SIGLEC1 ENSG00000088827 20 3667617 3687775 p13 ov48,ov80 2 HSPA12B ENSG00000132622 20 3713356 3733758 p13 ov48,ov80 2 C20orf27 ENSG00000101220 20 3734155 3748452 p13 ov48,ov80 2 SPEF1 ENSG00000101222 20 3758152 3762102 p13 ov48,ov80 2 CENPB ENSG00000125817 20 3764500 3767337 p13 ov48,ov80 2 CDC25B ENSG00000101224 20 3776401 3786757 p13 ov48,ov80 2 C20orf29 ENSG00000125843 20 3801178 3805954 p13 ov48,ov80 2 PRNP ENSG00000171867 20 4666797 4690360 p13 ov100,ov48 2 PRND ENSG00000171864 20 4702556 4709105 p13 ov100,ov48 2 PRNT ENSG00000180259 20 4711928 4721314 p13 ov100,ov48 2 RASSF2 ENSG00000101265 20 4760670 4804291 p13 ov100,ov48 2 HAO1 ENSG00000101323 20 7863631 7921093 p12.3 ov48,ov81 2 TMX4 ENSG00000125827 20 7958024 8000476 p12.3 ov48,ov81 2 PLCB1 ENSG00000182621 20 8112824 8865547 p12.3 ov48,ov81 2 PLCB4 ENSG00000101333 20 9049410 9461889 p12.3 ov48,ov81 2 SPTLC3 ENSG00000172296 20 12989627 13147411 p12.1 ov58,ov80 2 FLRT3 ENSG00000125848 20 14304660 14318270 p12.1 ov100,ov81 2 C20orf26 ENSG00000089101 20 20033196 20341346 p11.23 ov100,ov80 2 INSM1 ENSG00000173404 20 20348765 20351590 p11.23 ov100,ov80 2 C20orf74 ENSG00000188559 20 20370196 20693266 p11.23 ov100,ov80 2 REM1 ENSG00000088320 20 30063105 30072707 q11.21 ov33,ov58 2 HM13 ENSG00000101294 20 30102241 30157368 q11.21 ov33,ov58 2 COL20A1 ENSG00000101203 20 61924538 61966203 q13.33 ov33,ov39 2 ETS2 ENSG00000157557 21 40177231 40196879 q22.2 ov2,ov66 2 C21orf104 ENSG00000231832 21 40394767 40395228 q22.2 ov2,ov66 2 PSMG1 ENSG00000183527 21 40546695 40555328 q22.2 ov2,ov66 2 BRWD1 ENSG00000185658 21 40557404 40685556 q22.2 ov2,ov66 2 C21orf87 ENSG00000226809 21 40685906 40686343 q22.2 ov2,ov66 2 HMGN1 ENSG00000205581 21 40714241 40721573 q22.2 ov2,ov66 2 WRB ENSG00000182093 21 40752213 40778398 q22.2 ov2,ov66 2 LCA5L ENSG00000157578 21 40777770 40817729 q22.2 ov2,ov66 2 SH3BGR ENSG00000185437 21 40817791 40887433 q22.2 ov2,ov66 2 B3GALT5 ENSG00000183778 21 40928369 41034816 q22.2 ov2,ov66 2 C21orf88 ENSG00000184809 21 40969079 40984749 q22.2 ov2,ov66 2 IGSF5 ENSG00000183067 21 41117437 41174023 q22.2 ov2,ov66 2 PCP4 ENSG00000183036 21 41239347 41301320 q22.2 ov2,ov66 2 DSCAM ENSG00000171587 21 41382926 42219065 q22.2 ov2,ov66 2 BACE2 ENSG00000182240 21 42539728 42648508 q22.2 ov2,ov66 2 FAM3B ENSG00000183844 21 42688661 42729654 q22.3 ov2,ov66 2 MX2 ENSG00000183486 21 42733926 42780861 q22.3 ov2,ov66 2 MX1 ENSG00000157601 21 42792442 42831141 q22.3 ov2,ov66 2 TMPRSS2 ENSG00000184012 21 42836480 42903043 q22.3 ov2,ov66 2 RIPK4 ENSG00000183421 21 43159545 43187266 q22.3 ov2,ov66 2 PRDM15 ENSG00000141956 21 43218385 43299591 q22.3 ov2,ov66 2 C2CD2 ENSG00000157617 21 43305219 43373999 q22.3 ov2,ov66 2 ZNF295 ENSG00000173276 21 43406940 43430496 q22.3 ov2,ov66 2 UMODL1 ENSG00000177398 21 43483068 43563105 q22.3 ov2,ov66 2 C21orf128 ENSG00000184385 21 43522244 43528644 q22.3 ov2,ov66 2 ABCG1 ENSG00000160179 21 43619799 43717354 q22.3 ov2,ov66 2 TFF3 ENSG00000160180 21 43726682 43735706 q22.3 ov2,ov66 2 TFF2 ENSG00000160181 21 43766469 43771208 q22.3 ov2,ov66 2 TFF1 ENSG00000160182 21 43782393 43786644 q22.3 ov2,ov66 2 TMPRSS3 ENSG00000160183 21 43791999 43816955 q22.3 ov2,ov66 2 UBASH3A ENSG00000160185 21 43824011 43867774 q22.3 ov2,ov66 2 RSPH1 ENSG00000160188 21 43892599 43916464 q22.3 ov2,ov66 2 SLC37A1 ENSG00000160190 21 43916118 44001550 q22.3 ov2,ov66 2 PDE9A ENSG00000160191 21 44073862 44195616 q22.3 ov2,ov66 2 WDR4 ENSG00000160193 21 44263206 44299678 q22.3 ov2,ov66 2 NDUFV3 ENSG00000160194 21 44313378 44427677 q22.3 ov2,ov66 2 PKNOX1 ENSG00000160199 21 44394643 44453688 q22.3 ov2,ov66 2 CBS ENSG00000160200 21 44473301 44497053 q22.3 ov2,ov66 2 U2AF1 ENSG00000160201 21 44513067 44527688 q22.3 ov2,ov66 2 CRYAA ENSG00000160202 21 44589141 44592913 q22.3 ov2,ov66 2 C21orf136 ENSG00000228761 21 44748578 44749486 q22.3 ov2,ov66 2 SIK1 ENSG00000142178 21 44834402 44847008 q22.3 ov2,ov66 2 HSF2BP ENSG00000160207 21 44949073 45079374 q22.3 ov2,ov66 2 RRP1B ENSG00000160208 21 45079432 45115960 q22.3 ov2,ov66 2 PDXK ENSG00000160209 21 45138975 45182187 q22.3 ov2,ov66 2 CSTB ENSG00000160213 21 45193832 45196259 q22.3 ov2,ov66 2 RRP1 ENSG00000160214 21 45209418 45223983 q22.3 ov2,ov66 2 AGPAT3 ENSG00000160216 21 45285116 45407475 q22.3 ov2,ov66 2 TRAPPC10 ENSG00000160218 21 45432206 45526433 q22.3 ov2,ov66 2 C21orf33 ENSG00000160221 21 45527208 45565605 q22.3 ov2,ov66 2 C21orf32 ENSG00000235909 21 45587818 45593580 q22.3 ov2,ov66 2 ICOSLG ENSG00000160223 21 45642930 45660834 q22.3 ov2,ov66 2 DNMT3L ENSG00000142182 21 45666222 45682099 q22.3 ov2,ov66 2 AIRE ENSG00000160224 21 45705763 45718110 q22.3 ov2,ov66 2 PFKL ENSG00000141959 21 45719930 45747259 q22.3 ov2,ov66 2 C21orf2 ENSG00000160226 21 45748827 45759285 q22.3 ov2,ov66 2 TRPM2 ENSG00000142185 21 45770046 45862964 q22.3 ov2,ov66 2 LRRC3 ENSG00000160233 21 45875393 45878730 q22.3 ov2,ov66 2 C21orf30 ENSG00000227451 21 45879814 45882078 q22.3 ov2,ov66 2 C21orf90 ENSG00000182912 21 45937098 45938860 q22.3 ov2,ov66 2 KRTAP10-1 ENSG00000215455 21 45958864 45960078 q22.3 ov2,ov66 2 KRTAP10-2 ENSG00000205445 21 45970240 45971388 q22.3 ov2,ov66 2 COL6A1 ENSG00000142156 21 47401663 47424963 q22.3 ov2,ov66 2 COL6A2 ENSG00000142173 21 47518033 47552761 q22.3 ov2,ov66 2 FTCD ENSG00000160282 21 47556176 47575481 q22.3 ov2,ov66 2 C21orf56 ENSG00000160284 21 47581063 47604373 q22.3 ov2,ov66 2 LSS ENSG00000160285 21 47608360 47648738 q22.3 ov2,ov66 2 MCM3AP ENSG00000160294 21 47655047 47706211 q22.3 ov2,ov66 2 C21orf57 ENSG00000182362 21 47706267 47717665 q22.3 ov2,ov66 2 C21orf58 ENSG00000160298 21 47720344 47743789 q22.3 ov2,ov66 2 PCNT ENSG00000160299 21 47744036 47865678 q22.3 ov2,ov66 2 DIP2A ENSG00000160305 21 47878812 47989621 q22.3 ov2,ov66 2 S100B ENSG00000160307 21 48018540 48025035 q22.3 ov2,ov66 2 PRMT2 ENSG00000160310 21 48055527 48085036 q22.3 ov2,ov66 2 IL17RA ENSG00000177663 22 17565849 17591387 q11.1 ov16,ov61 2 CECR6 ENSG00000183307 22 17597189 17602257 q11.1 ov16,ov61 2 CECR5 ENSG00000069998 22 17618411 17646177 q11.1 ov16,ov61 2 CECR1 ENSG00000093072 22 17660192 17747623 q11.1 ov16,ov61 2 CECR2 ENSG00000099954 22 17840837 18033845 q11.1 ov16,ov61 2 DGCR6 ENSG00000183628 22 18893541 18899601 q11.21 ov3,ov54 2 PRODH ENSG00000100033 22 18900294 18923964 q11.21 ov3,ov54 2 RPL7AP70 ENSG00000227127 22 19611791 19780676 q11.21 ov3,ov61 2 SEPT5 ENSG00000184702 22 19702027 19712295 q11.21 ov3,ov61 2 GP1BB ENSG00000203618 22 19711066 19712297 q11.21 ov3,ov61 2 TBX1 ENSG00000184058 22 19744226 19771110 q11.21 ov3,ov61 2 GNB1L ENSG00000185838 22 19770747 19842462 q11.21 ov3,ov61 2 C22orf29 ENSG00000215012 22 19833661 19842419 q11.21 ov3,ov61 2 TXNRD2 ENSG00000184470 22 19863040 19929341 q11.21 ov3,ov61 2 COMT ENSG00000093010 22 19929256 19957498 q11.21 ov3,ov61 2 ARVCF ENSG00000099889 22 19957421 20004309 q11.21 ov3,ov61 2 C22orf25 ENSG00000183597 22 20004537 20053449 q11.21 ov3,ov61 2 DGCR8 ENSG00000128191 22 20067814 20099395 q11.21 ov3,ov61 2 TRMT2A ENSG00000099899 22 20098344 20104768 q11.21 ov3,ov61 2 RANBP1 ENSG00000099901 22 20103461 20114878 q11.21 ov3,ov61 2 ZDHHC8 ENSG00000099904 22 20116979 20134754 q11.21 ov3,ov61 2 RTN4R ENSG00000040608 22 20228938 20255838 q11.21 ov3,ov61 2 DGCR6L ENSG00000128185 22 20301802 20307608 q11.21 ov3,ov61 2 GGTLC3 ENSG00000183038 22 20366211 20368028 q11.21 ov3,ov61 2 TMEM191B ENSG00000224214 22 20377015 20377518 q11.21 ov3,ov61 2 RIMBP3 ENSG00000196622 22 20455682 20461786 q11.21 ov3,ov61 2 USP41 ENSG00000161133 22 20704868 20745048 q11.21 ov3,ov61 2 ZNF74 ENSG00000185252 22 20748479 20762752 q11.21 ov3,ov61 2 KLHL22 ENSG00000099910 22 20778875 20850122 q11.21 ov3,ov61 2 MED15 ENSG00000099917 22 20850200 20941918 q11.21 ov3,ov61 2 POM121L4P ENSG00000217261 22 21043892 21046295 q11.21 ov3,ov61 2 TOP3B ENSG00000100038 22 21061981 22337213 q11.22 ov3,ov61 2 CRYBB2 ENSG00000100058 22 25615612 25916821 q11.23 ov33,ov61 2 LRP5L ENSG00000100068 22 25747388 25801324 q11.23 ov33,ov61 2 ADRBK2 ENSG00000100077 22 25960861 26125238 q12.1 ov33,ov61 2 MYO18B ENSG00000133454 22 26138120 26427007 q12.1 ov33,ov61 2 SEZ6L ENSG00000100095 22 26565480 26776434 q12.1 ov33,ov61 2 ASPHD2 ENSG00000128203 22 26825280 26840978 q12.1 ov33,ov61 2 HPS4 ENSG00000100099 22 26847446 26879820 q12.1 ov33,ov61 2 SRRD ENSG00000100104 22 26879849 26888037 q12.1 ov33,ov61 2 TFIP11 ENSG00000100109 22 26887191 26908471 q12.1 ov33,ov61 2 TPST2 ENSG00000128294 22 26921712 26992681 q12.1 ov33,ov61 2 CRYBB1 ENSG00000100122 22 26995362 27014038 q12.1 ov33,ov61 2 CRYBA4 ENSG00000196431 22 27017928 27026635 q12.1 ov33,ov61 2 MN1 ENSG00000169184 22 28144266 28197486 q12.1 ov33,ov61 2 PITPNB ENSG00000180957 22 28247658 28316122 q12.1 ov33,ov61 2 MTMR3 ENSG00000100330 22 30279158 30426855 q12.2 ov100,ov31 2 HORMAD2 ENSG00000176635 22 30476453 30573062 q12.2 ov100,ov31 2 LIF ENSG00000128342 22 30636442 30642796 q12.2 ov100,ov31 2 OSM ENSG00000099985 22 30658821 30662840 q12.2 ov100,ov31 2 TBC1D10A ENSG00000099992 22 30681108 30722936 q12.2 ov100,ov31 2 SF3A1 ENSG00000099995 22 30727979 30752913 q12.2 ov100,ov31 2 CCDC157 ENSG00000187860 22 30752624 30772818 q12.2 ov100,ov31 2 RNF215 ENSG00000099999 22 30770930 30817760 q12.2 ov100,ov31 2 TXN2 ENSG00000100348 22 36863093 36877687 q12.3 ov108,ov61 2 FOXRED2 ENSG00000100350 22 36883234 36903148 q12.3 ov108,ov61 2 EIF3D ENSG00000100353 22 36891826 36925277 q12.3 ov108,ov61 2 CACNG2 ENSG00000166862 22 36960104 37098890 q12.3 ov108,ov61 2 H1F0 ENSG00000189060 22 38201114 38203442 q13.1 ov39,ov61 2 GCAT ENSG00000100116 22 38203912 38213183 q13.1 ov39,ov61 2 GALR3 ENSG00000128310 22 38219389 38221502 q13.1 ov39,ov61 2 ANKRD54 ENSG00000100124 22 38226863 38240330 q13.1 ov39,ov61 2 EIF3L ENSG00000100129 22 38245328 38284638 q13.1 ov39,ov61 2 MICALL1 ENSG00000100139 22 38301664 38338025 q13.1 ov39,ov61 2 C22orf23 ENSG00000128346 22 38339528 38349676 q13.1 ov39,ov61 2 POLR2F ENSG00000100142 22 38349674 38437113 q13.1 ov39,ov61 2 SOX10 ENSG00000100146 22 38366693 38383429 q13.1 ov39,ov61 2 PICK1 ENSG00000100151 22 38452318 38471707 q13.1 ov39,ov61 2 SLC16A8 ENSG00000100156 22 38474147 38480100 q13.1 ov39,ov61 2 BAIAP2L2 ENSG00000128298 22 38480897 38506676 q13.1 ov39,ov61 2 PLA2G6 ENSG00000184381 22 38507503 38588100 q13.1 ov39,ov61 2 MAFF ENSG00000185022 22 38597998 38612512 q13.1 ov39,ov61 2 TMEM184B ENSG00000198792 22 38615298 38669016 q13.1 ov39,ov61 2 CSNK1E ENSG00000213923 22 38686698 38794934 q13.1 ov39,ov61 2 UPK3A ENSG00000100373 22 45680863 45691754 q13.31 ov34,ov61 2 FAM118A ENSG00000100376 22 45704863 45737834 q13.31 ov34,ov61 2 Supplementary Table 2 Page 14
SMC1B ENSG00000077935 22 45739944 45809500 q13.31 ov34,ov61 2 RIBC2 ENSG00000128408 22 45809580 45828302 q13.31 ov34,ov61 2 FBLN1 ENSG00000077942 22 45898118 45997014 q13.31 ov34,ov61 2 ATXN10 ENSG00000130638 22 46067687 46240829 q13.31 ov34,ov61 2 FAM19A5 ENSG00000219438 22 48885272 49246724 q13.32 ov33,ov61 2 C22orf34 ENSG00000188511 22 49808176 50051190 q13.33 ov33,ov61 2 BRD1 ENSG00000100425 22 50166931 50221160 q13.33 ov33,ov61 2 Supplementary Table 3: Table summarising of the correlations between HER2 amplification as defined by chromogenic in situ hybridisation and HER2 overexpression as defined by immunohistochemistry in ovarian clear cell carcinomas identified as harbouring HER2 gene amplification based on microarray-based comparative genomic hybridisation analysis; the chromogenic in situ hybridisation validation of the presence of 17q21-21.32 amplification as defined by microarray- based comparative genomic hybridisation analysis of ovarian clear cell carcinomas; and the fluorescence in situ hybridisation validation of the presence of 19q13.2, 20q13.13 and 20q13.31-q13.32 amplification as defined by microarray-based comparative genomic hybridisation analysis in ovarian clear cell carcinomas.
Tumour ID aCGH aws log2ratio HER2 CISH HER2 IHC 33 0.44 AMP 2+ 34 0.46 AMP 3+ 48 1.16 AMP 3+ 58 0.46 AMP 3+ 107 0.48 AMP 2+ 108 0.42 AMP 2+ 12 0.08 NOT AMP 1+ 18 0.07 NOT AMP 1+ 31 0.08 NOT AMP 0 51 0.08 NOT AMP 0 55 -0.08 NOT AMP 0 82 0.02 NOT AMP 0 92 0.05 NOT AMP 0
Amplicon Tumour ID Cluster aCGH aws log2ratio CISH/FISH 17q21.2-21.32 1 1 0.44 AMP 102 1 0.49 AMP 108 1 0.42 AMP 58 1 0.51 AMP 61 1 0.71 AMP 80 1 0.49 AMP 107 2 0.08 NOT AMP 82 2 0.1 NOT AMP 92 2 0.12 NOT AMP 94 2 0.07 NOT AMP 100 2 0.1 NOT AMP 34 2 0.12 NOT AMP 19p13.2 40 1 0.88 AMP 55 1 0.67 AMP 58 1 0.48 AMP 81 1 0.46 AMP 20 1 0.2 NOT AMP 34 2 0.05 NOT AMP 39 2 0.16 NOT AMP 20q13.13 33 1 0.57 AMP 51 1 0.46 AMP 78 1 0.46 AMP 80 1 0.45 AMP 20 1 0.06 NOT AMP 51 2 0.16 NOT AMP 34 2 0.17 NOT AMP 20q13.31-q13.32 33 1 0.57 AMP 40 1 0.61 AMP 66 1 0.42 AMP 78 1 0.46 AMP 20 1 0.06 NOT AMP 34 2 0.17 NOT AMP 94 2 0.28 NOT AMP Supplementary Table 4 Page 1
Supplementary Table 4: List of copy number aberrations significantly different in frequency between Cluster-1 and Cluster 2 ovarian clear cell carcinomas using Multi-Fisher’s exact test corrected for false discovery rate (adjusted p<0.05).
Gains
Chromosome Cytoband Start (bp) End (bp) Maximum Frequency Genes miRNAs aCGH copy number polymorphisms All copy number polymorphisms cluster 1 no cluster 1 gains cluster 2 no cluster 2 gains gain gain 1 p36.33-p36.32 1633798 2485326 52% CDC2L2, SLC35E2, NADK, GNB1, CALML6, TMEM52, C1orf222, KIAA1751, GABRD, PRKCZ, C1orf86, SKI, MORN1, RER1, PEX10, PLCH2, PANK4, HES5 V_0002_LC0028_Iafrate et al. (2004), V_2042_LC0028_Locke et al. (2006), V_4192_LC0040_Wong et al. V_0002, V_0378, V_2042, V_2295, V_3276, V_3277, V_4192, V_4193, V_8246, V_9865, V_9866, 617189 (2007), V_4193_LC0040_Wong et al. (2007) V_22925, V_29446 1 p36.32 2910352 3303674 48% ACTRT2, PRDM16 V_4194_LC0040_Wong et al. (2007), V_4195_LC0040_Wong et al. (2007), V_4196_LC0040_Wong et al. V_3278, V_4194, V_4195, V_4196, V_8246 7 16 19 8 (2007) 1 p36.32 3636746 4266972 52% TP73, CCDC27, LRRC47, KIAA0562, DFFB, C1orf174 V_4197_LC0040_Wong et al. (2007) V_2296, V_4197, V_5463, V_8246 6 17 18 9 1 p36.32 4282602 5200607 48% AJAP1 V_3279, V_6826 7 16 19 8 1 p36.32-p36.31 5334982 6274893 44% NPHP4, KCNAB2, CHD5, RPL22, RNF207 V_4198_LC0097_Wong et al. (2007), V_4199_LC0100_Wong et al. (2007), V_4200_LC0104_Wong et al. V_3279, V_4198, V_4199, V_4200, V_9869 8 15 20 7 (2007) 1 p34.2 41544465 43866798 32% SCMH1, FOXO6, EDN2, HIVEP3, GUCA2B, GUCA2A, FOXJ3, RIMKLA, ZMYND12, PPCS, PPIH, YBX1, CLDN19, LEPRE1, C1orf50, CCDC23, ERMAP, V_1541, V_5490 11 12 23 4 ZNF691, SLC2A1, FAM183A, EBNA1BP2, WDR65, TIE1, MPL, CDC20, ELOVL1, MED8, C1orf84 1 p33 47194084 49359861 24% CYP4B1, CYP4A11, CYP4X1, CYP4Z1, CYP4A22, PDZK1IP1, TAL1, STIL, CMPK1, FOXE3, FOXD2, SLC5A9, SPATA6, AGBL4, BEND5 V_6825, V_7862 13 10 25 2 1 p32.3 51438773 52946386 12% CDKN2C, C1orf185, RNF11, TTC39A, EPS15, OSBPL9, NRD1, RAB3B, TXNDC12, KTI12, BTF3L4, ZFYVE9, CC2D1B, ORC1L, PRPF38A, ZCCHC11 V_4223_LC0373_Wong et al. (2007), V_4224_LC0373_Wong et al. (2007) V_3290, V_4223, V_4224, V_5493 17 6 27 0 1 p32.3 53700137 53849829 12% MAGOH, LRP8 V_3291 17 6 27 0 1 q21.1 143510356 143983874 14% PPIAL4G, FAM72D, SRGAP2P2 V_0685_LC0752_Sharp et al. (2005), V_2050_LC0752_Locke et al. (2006), V_4249_LC0752_Wong et al. V_0260, V_0387, V_0685, V_1553, V_2050, V_2324, V_3310, V_4249, V_4250, V_4251, V_5199, 16 7 27 0 (2007), V_4250_LC0752_Wong et al. (2007), V_4251_LC0752_Wong et al. (2007) V_5514, V_6780, V_8288, V_22602, V_22850, V_22945, V_23009, V_23199, V_23250, V_23251 1 q21.1-q21.2 146960128 149746776 20% BCL9, ACP6, GJA5, GJA8, GPR89B, NBPF11, FAM108A2, PPIAL4A, NBPF14, NBPF10, NBPF16, FCGR1C, HIST2H3PS2, FAM72C, PPIAL4C, FAM91A2 V_2052_LC0752_Locke et al. (2006), V_4254_LC0752_Wong et al. (2007), V_4255_LC0752_Wong et al. V_0391, V_1016, V_1017, V_1327, V_1328, V_1329, V_1330, V_1331, V_1332, V_1333, V_1334, 14 9 26 1 (2007), V_4256_LC0752_Wong et al. (2007) V_1335, V_1336, V_1554, V_1555, V_1556, V_2052, V_2326, V_2327, V_3313, V_4254, V_4255, V_4256, V_5521, V_5522, V_6785, V_8091, V_8288, V_8328, V_8329, V_8330, V_8331, V_8332, V_8924, V_9371, V_9372, V_9373, V_9895, V_9896, V_9897, V_22636, V_22942 1 q22 155237093 155632998 44% CLK2, HCN3, PKLR, FDPS, RUSC1, ASH1L, MSTO1, YY1AP1 hsa-mir-555 815207 1 q24.2 168131924 169197441 14% TIPRL, SFT2D2, ANKRD26L1, TBX19, XCL2, XCL1, DPT, ATP1B1, NME7 hsa-mir-557 V_2333, V_3319 16 7 27 0 1 q24.3 171558038 172585650 14% BAT2D1, MYOC, VAMP4, METTL13, DNM3, C1orf105, PIGC, C1orf9 hsa-mir-214, hsa-mir-199a-2 V_4262_LC0938_Wong et al. (2007) V_3320, V_4262 16 7 27 0 1 q32.1 206559883 206769473 24% SRGAP2, IKBKE, C1orf147, RASSF5, LGTN V_2345 13 10 25 2 1 q32.1-q32.2 206879040 208052897 24% MAPKAPK2, IL10, IL19, IL20, IL24, FAIM3, PIGR, FCAMR, C1orf116, YOD1, PFKFB2, C4BPB, C4BPA, CD55, CR2, CR1, CR1L, CD46, C1orf132 hsa-mir-29c, hsa-mir-29b-2 V_1562 13 10 25 2 1 q42.2 232826551 233605498 28% KIAA1383, C1orf57, PCNXL2 V_4272_LC1302_Wong et al. (2007) V_3335, V_4272 12 11 24 3 2 p23.2-p23.1 28992204 31601222 32% PPP1CB, SPDYA, TRMT61B, WDR43, FAM179A, C2orf71, CLIP4, ALK, YPEL5, LBH, LCLAT1, CAPN13, GALNT14, CAPN14, EHD3, XDH V_1569, V_1570, V_1571, V_1572, V_1573, V_2374, V_3348, V_5973, V_7264, V_7828, V_8366, 11 12 23 4 V_9401, V_9925 2 p22.3 32482858 32852192 28% NLRC4, YIPF4, BIRC6 hsa-mir-558 V_5202, V_5203, V_8158, V_8367 12 11 24 3 2 p22.3 33853418 34180201 28% MYADML 12 11 24 3 2 p22.2-p22.1 38068511 40066256 28% FAM82A1, CYP1B1, ATL2, HNRPLL, GALM, SFRS7, GEMIN6, DHX57, MORN2, SOS1, CDKL4, MAP4K3, TMEM178, THUMPD2 V_5976, V_5977, V_9403, V_9927 11 12 25 2 2 p22.1 40387757 40777555 18% SLC8A1 V_3353, V_8940 15 8 26 1 2 p22.1-p21 41751282 43663718 28% EML4, COX7A2L, KCNG3, MTA3, OXER1, HAAO, ZFP36L2, THADA V_0524, V_8941, V_8942, V_9406, V_9930 11 12 24 3 2 p21-p16.3 44605689 49419260 28% C2orf34, SIX3, SIX2, SRBD1, PRKCE, EPAS1, ATP6V1E2, RHOQ, PIGF, CRIPT, SOCS5, MCFD2, TTC7A, CALM2, EPCAM, MSH2, KCNK12, MSH6, hsa-mir-559 V_4284_LC1832_Wong et al. (2007) V_0985, V_1349, V_1577, V_2382, V_3354, V_4284, V_5980, V_5981, V_5982, V_5983, V_7273, 11 12 23 4 FBXO11, FOXN2, KLRAQ1, STON1, LHCGR, FSHR V_8368, V_8944, V_8945, V_9408, V_9409, V_9410, V_9411, V_9931, V_9932, V_23616 2 p16.1-p15 59436536 62744026 12% BCL11A, PAPOLG, REL, PUS10, PEX13, KIAA1841, C2orf74, AHSA2, USP34, XPO1, FAM161A, CCT4, COMMD1, B3GNT1, TMEM17 V_0019_LC1897_Iafrate et al. (2004), V_4287_LC1900_Wong et al. (2007) V_0019, V_1582, V_2386, V_3361, V_4287, V_8373 17 6 27 0 2 p15-p13.3 63892249 68725155 20% UGP2, VPS54, PELI1, AFTPH, SERTAD2, SLC1A4, CEP68, RAB1A, ACTR2, SPRED2, MEIS1, ETAA1, C1D, WDR92, PNO1, CNRIP1, PLEK, FBXO48, APLF V_4288_LC1904_Wong et al. (2007), V_5025_LC1905_Wong et al. (2007) V_2387, V_2388, V_2389, V_3362, V_3363, V_3364, V_4288, V_5025, V_5985, V_8374, V_8949, 12 11 27 0 V_9414, V_23148 2 p13.3 69760987 70147528 12% AAK1, ANXA4, GMCL1, SNRNP27, MXD1 V_7279 17 6 27 0 3 p21.1-p14.3 53645459 55743891 28% CACNA1D, CHDH, IL17RB, ACTR8, CACNA2D3, LRTM1, WNT5A, ERC2 V_3430, V_9995 11 12 24 3 3 q13.33 119862338 120426248 12% GPR156, LRRC58, FSTL1, NDUFB4, HGD, RABL3 V_7355 17 6 27 0 3 q21.1-q22.1 121968486 132602048 32% CASR, CSTA, CCDC58, FAM162A, WDR5B, KPNA1, PARP9, DTX3L, PARP15, PARP14, HSPBAP1, DIRC2, SEMA5B, PDIA5, SEC22A, ADCY5, PTPLB, hsa-mir-548i-1, hsa-mir-1280 V_4352_LC3588_Wong et al. (2007), V_4353_LC3617_Wong et al. (2007) V_1060, V_1374, V_1638, V_1639, V_2469, V_2470, V_2471, V_2472, V_3446, V_3447, V_3448, 914252 MYLK, CCDC14, ROPN1, KALRN, UMPS, ITGB5, MUC13, HEG1, SLC12A8, ZNF148, SNX4, OSBPL11, OR7E85P, ALG1L, ROPN1B, SLC41A3, ALDH1L1, V_4352, V_4353, V_5213, V_6207, V_6208, V_6209, V_7356, V_7357, V_7358, V_7359, V_7360, KLF15, CCDC37, ZXDC, UROC1, CHST13, C3orf22, TXNRD3, C3orf46, CHCHD6, PLXNA1, C3orf56, GPR175, MCM2, PODXL2, ABTB1, MGLL, KLHDC6, V_7361, V_7809, V_7818, V_22630, V_22757, V_22886, V_23145, V_23661, V_23662 SEC61A1, RUVBL1, EEFSEC, DNAJB8, GATA2, C3orf27, RPN1, RAB7A, ACAD9, KIAA1257, CCDC48, GP9, RAB43, CNBP, COPG, C3orf37, H1FX, C3orf47, C3orf25, MBD4, IFT122, RHO, H1FOO, PLXND1, TMCC1, TRH, COL29A1, PIK3R4, ATP2C1, ASTE1, NEK11, NUDT16, MRPL3, CPNE4, ACPP, DNAJC13, ACAD11, CCRL1, UBA5 3 q22.2-q22.3 135570328 138522523 14% PPP2R3A, MSL2, PCCB, STAG1, TMEM22, NCK1, IL20RB, SOX14, CLDN18, DZIP1L, A4GNT, DBR1, ARMC8, TXNDC6, MRAS, FAM62C, CEP70, FAIM, V_1061, V_1641, V_10009, V_6211, V_6212, V_7364, V_7365, V_7366, V_8073, V_22574 16 7 27 0 PIK3CB 3 q24 142859175 143404626 12% SLC9A9 V_2476, V_3451, V_7367, V_8063, V_8430, V_8431 17 6 27 0 3 q24 144452478 146700759 12% PLOD2, PLSCR4, PLSCR2, PLSCR1, PLSCR5 V_1063, V_3453, V_3454, V_7368, V_7369, V_7950, V_22851, V_23666 17 6 27 0 3 q25.1 149430372 150114363 14% COMMD2, C3orf16, RNF13, PFN2 V_3455, V_22565, V_23083, V_23667 16 7 27 0 3 q26.1 164263274 164753343 12% SI V_2484, V_10019, V_8220, V_8435, V_8994 17 6 27 0 3 q27.3 186719008 187033487 32% ST6GAL1, RPL39L, RTP1, MASP1 11 12 23 4 3 q27.3-q28 187816249 188388391 32% LPP V_0564, V_1380, V_1381, V_1656, V_2488, V_3467, V_3468, V_10027, V_7390, V_22667, V_23003, 11 12 23 4 V_23675 3 q28 189664646 190546834 36% LEPREL1, CLDN1, CLDN16, TMEM207, IL1RAP V_6224, V_7391 10 13 22 5 3 q29 193328086 197791562 50% OPA1, HES1, CPN2, LRRC15, GP5, ATP13A3, TMEM44, LSG1, FAM43A, C3orf21, ACAP2, PPP1R2, APOD, MUC20, MUC4, TNK2, TFRC, ZDHHC19, hsa-mir-570, hsa-mir-922 V_0042_LC4028_Iafrate et al. (2004), V_0696_LC4028_Sharp et al. (2005), V_0697_LC4028_Sharp et al. V_0042, V_0565, V_0566, V_0567, V_0568, V_0696, V_0697, V_1383, V_1660, V_1661, V_1662, 617198 PCYT1A, TCTEX1D2, TM4SF19, UBXN7, RNF168, C3orf43, WDR53, FBXO45, PIGX, LRRC33, C3orf34, PAK2, SENP5, NCBP2, PIGZ, MFI2, DLG1, BDH1, (2005), V_2062_LC4004_Locke et al. (2006), V_2063_LC4020_Locke et al. (2006), V_2064_LC4028_Locke et V_2062, V_2063, V_2064, V_2065, V_2490, V_2491, V_3470, V_3471, V_3472, V_4366, V_4367, KIAA0226, FYTTD1, LRCH3, IQCG, RPL35A, LMLN al. (2006), V_2065_LC4028_Locke et al. (2006), V_4366_LC4028_Wong et al. (2007), V_4368, V_6225, V_6226, V_6227, V_6228, V_6229, V_7394, V_7395, V_7396, V_7398, V_7399, V_4367_LC4028_Wong et al. (2007), V_4368_LC4048_Wong et al. (2007) V_7400, V_7401, V_7969, V_8111, V_8439, V_22975, V_23180, V_23193, V_23234, V_23677 6 p25.3 1072318 1357295 24% FOXQ1 V_4484_LC7948_Wong et al. (2007) V_4484 13 10 25 2 6 p22.3 15403977 15860589 12% JARID2, DTNBP1 V_2620, V_7536 17 6 27 0 6 p22.2 25352929 26694142 20% LRRC16A, SCGN, HIST1H2AA, HIST1H2BA, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, 14 9 26 1 HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H1E, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H2BG, HIST1H2AE, HIST1H3E, HIST1H1D, HIST1H4F, HIST1H4G, HIST1H3F, HIST1H2BH, HIST1H3G, HIST1H2BI, HIST1H4H, BTN3A2, BTN2A2, BTN3A1, BTN2A3, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1 6 q25.2 154612697 155291778 12% IPCEF1, MAGI1, RBM16 V_2658, V_10168, V_7530, V_7531 17 6 27 0 6 q25.3 157725634 157949462 12% C6orf35, ZDHHC14 V_7533, V_7534 17 6 27 0 6 q27 166281844 167321116 18% T, PRR18, SFT2D1, BRP44L, RPS6KA2 hsa-mir-1913 V_6525, V_23786 15 8 26 1 6 q27 168405237 169508749 18% KIF25, FRMD1, DACT2, SMOC2 V_2668, V_3654, V_3655, V_3656, V_10172, V_6527, V_8274, V_23789, V_23790, V_23791, V_29404 15 8 26 1 V_29405, V_29414 7 p22.2 3201654 4206171 36% SDK1 V_1141, V_1721, V_2670, V_2671, V_3661, V_10173, V_9556 10 13 22 5 7 p15.3 22158804 22796467 18% RAPGEF5, IL6 V_3670 15 8 26 1 7 p15.3 24303265 24691665 18% NPY, MPP6 V_9053 15 8 26 1 7 p12.3 46846193 47534305 22% TNS3 V_4534_LC9482_Wong et al. (2007) V_2694, V_4534, V_10186, V_6543, V_9055 13 10 26 1 7 p12.3 48238395 48545756 20% ABCA13 14 9 26 1 7 q11.21 65892809 66719485 32% KCTD7, C7orf42, SBDS, TYW1 V_2102_LC9561_Locke et al. (2006) V_2102, V_3683, V_6552, V_7639, V_7640, V_7641, V_7642, V_8013, V_22688 11 12 23 4 7 q11.23-q21.11 75756519 80296971 32% HSPB1, YWHAG, SRCRB4D, ZP3, UPK3B, POMZP3, PMS2L11, CCDC146, FGL2, PION, PTPN12, RSBN1L, TMEM60, PHTF2, MAGI2, GNAI1, CD36, GNAT3 V_0723_LC9631_Sharp et al. (2005) V_0611, V_0723, V_1151, V_1152, V_1153, V_1154, V_1155, V_1427, V_1428, V_1726, V_1727, 914225 V_1728, V_2700, V_2701, V_3686, V_3687, V_10191, V_10192, V_10193, V_10194, V_10195, V_5240 V_5241, V_6557, V_6558, V_7646, V_7647, V_7648, V_7649, V_8140, V_8568, V_8569, V_8570, V_9060, V_9061, V_9575, V_9576, V_22956 7 q21.3-q22.1 96546375 102006037 36% DLX6, DLX5, ACN9, TAC1, ASNS, OCM2, LMTK2, BHLHA15, TECPR1, BRI3, BAIAP2L1, NPTX2, TMEM130, TRRAP, SMURF1, KPNA7, ARPC1B, PDAP1, hsa-mir-25, hsa-mir-93, hsa-mir-106b V_0107_LC9766_Iafrate et al. (2004), V_0724_LC9769_Sharp et al. (2005), V_2104_LC9753_Locke et al. V_0107, V_0615, V_0616, V_0617, V_0724, V_1157, V_1431, V_1733, V_2104, V_2105, V_3691, 914216 BUD31, PTCD1, CPSF4, ZNF789, ZNF394, ZKSCAN5, C7orf38, ZNF655, ZNF498, CYP3A5, CYP3A7, CYP3A5P1, CYP3A4, CYP3A43, TRIM4, GJC3, AZGP1, (2006), V_2105_LC9769_Locke et al. (2006), V_4547_LC9750_Wong et al. (2007), V_4548_LC9750_Wong et V_3692, V_3693, V_4547, V_4548, V_4549, V_4550, V_4551, V_4552, V_4553, V_10203, V_10204, AZGP1P1, ZKSCAN1, ZSCAN21, ZNF3, COPS6, MCM7, AP4M1, TAF6, CNPY4, MBLAC1, C7orf59, C7orf43, GAL3ST4, GPC2, STAG3, GATS, PVRIG, al. (2007), V_4549_LC9755_Wong et al. (2007), V_4550_LC9756_Wong et al. (2007), V_5244, V_5245, V_6562, V_6563, V_7592, V_7593, V_7657, V_7658, V_8065, V_8575, V_8576, PMS2L1, PILRB, PILRA, ZCWPW1, MEPCE, C7orf47, C7orf61, TSC22D4, C7orf51, AGFG2, LRCH4, FBXO24, PCOLCE, MOSPD3, TFR2, ACTL6B, GNB2, V_4551_LC9756_Wong et al. (2007), V_4552_LC9762_Wong et al. (2007), V_4553_LC9769_Wong et al. V_22860, V_22903, V_22940, V_23819, V_23820, V_23856 GIGYF1, POP7, EPO, ZAN, EPHB4, SLC12A9, TRIP6, SRRT, UFSP1, ACHE, MUC3B, MUC3A, MUC12, MUC17, TRIM56, SERPINE1, AP1S1, VGF, C7orf52, (2007) MOGAT3, PLOD3, ZNHIT1, CLDN15, FIS1, RABL5, EMID2, MYL10, CUX1, SH2B2, PRKRIP1 7 q22.1-q22.3 102779908 104595766 24% NAPEPLD, DPY19L2P2, PMPCB, DNAJC2, PSMC2, SLC26A5, RELN, ORC5L, LHFPL3 V_1158, V_1159, V_1734, V_2705, V_3694, V_7973, V_8577, V_9581 13 10 25 2 7 q22.3 104520535 105109381 24% LHFPL3, MLL5, SRPK2, PUS7 V_2705, V_3694, V_8577 13 10 25 2 7 q22.3 105850996 106751409 24% NAMPT, PIK3CG, PRKAR2B V_7594, V_7885 13 10 25 2 7 q36.3 156754957 156984055 36% NOM1, MNX1, UBE3C V_7618, V_7619, V_10220 10 13 22 5 7 q36.3 157174544 157589520 32% DNAJB6, PTPRN2 hsa-mir-153-2 V_3715, V_5249, V_7621, V_8254, V_8585, V_8586, V_23834 11 12 23 4 9 p24.3 812926 1388632 18% DMRT1, DMRT3, DMRT2 V_2782, V_3754, V_3755, V_8207, V_8619, V_9103, V_10282, V_22531 15 8 26 1 9 p24.3-p24.2 1886733 2773568 18% SMARCA2, VLDLR, KCNV2 V_8006 15 8 26 1 9 p24.2 3773511 4386051 18% GLIS3 V_1811, V_2784 15 8 26 1 10 q21.3 69939965 70363173 24% MYPN, ATOH7, PBLD, HNRNPH3, RUFY2, DNA2, SLC25A16, TET1 V_1230, V_3808, V_10334 13 10 25 2 10 q21.3-q22.1 70598161 73062566 30% STOX1, DDX50, DDX21, KIAA1279, SRGN, VPS26A, SUPV3L1, HKDC1, HK1, TACR2, TSPAN15, NEUROG3, C10orf35, COL13A1, H2AFY2, AIFM2, TYSND1, V_0403, V_1487, V_2877, V_2878, V_5602, V_6879, V_10335, V_22672 11 12 24 3 SAR1A, PPA1, NPFFR1, LRRC20, EIF4EBP2, NODAL, KIAA1274, PRF1, ADAMTS14, C10orf27, SGPL1, PCBD1, UNC5B 10 q22.1-q22.3 73396315 78813071 26% CDH23, C10orf105, C10orf54, PSAP, CHST3, SPOCK2, ASCC1, C10orf104, DDIT4, DNAJB12, CBARA1, CCDC109A, OIT3, PLA2G12B, P4HA1, NUDT13, hsa-mir-606 V_0138_LC12468_Iafrate et al. (2004), V_4703_LC12451_Wong et al. (2007) V_0138, V_2879, V_3809, V_3810, V_3811, V_3812, V_4703, V_5603, V_5604, V_6880, V_6881, 10 13 25 2 ECD, FAM149B1, DNAJC9, C10orf103, MRPS16, TTC18, ANXA7, ZMYND17, PPP3CB, USP54, MYOZ1, SYNPO2L, AGAP5, GLUDP3, SEC24C, FUT11, V_6882, V_6883, V_6884, V_6885, V_8175, V_8661, V_22788, V_23049, V_23153, V_23391 CHCHD1, KIAA0913, NDST2, CAMK2G, C10orf55, PLAU, VCL, AP3M1, ADK, MYST4, DUPD1, DUSP13, SAMD8, VDAC2, COMTD1, ZNF503, C10orf41, C10orf11, KCNMA1 10 q24.1 97388472 98670593 20% ALDH18A1, TCTN3, ENTPD1, C10orf131, CC2D2B, CCNJ, ZNF518A, BLNK, DNTT, OPALIN, TLL2, TM9SF3, PIK3AP1, LCOR hsa-mir-607 V_1489, V_5609 14 9 26 1 10 q24.2 99669024 101704278 20% CRTAC1, C10orf28, LOXL4, PYROXD2, HPS1, HPSE2, CNNM1, GOT1, NKX2-3, SLC25A28, ENTPD7, COX15, CUTC, ABCC2, DNMBP hsa-mir-1287 V_4710_LC12569_Wong et al. (2007) V_2887, V_4710, V_6840, V_29402 14 9 26 1 10 q24.33-q25.1 105438285 106124265 18% SH3PXD2A, OBFC1, SLK, COL17A1, C10orf78, C10orf79, GSTO1, GSTO2, ITPRIP, CCDC147 hsa-mir-936, hsa-mir-609 15 8 26 1 10 q26.13 126581821 126797218 18% ZRANB1, CTBP2 V_5617 15 8 26 1 10 q26.2-q26.3 128550335 134832366 22% DOCK1, NPS, FOXI2, CLRN3, PTPRE, MKI67, MGMT, EBF3, GLRX3, TCERG1L, PPP2R2D, BNIP3, JAKMIP3, DPYSL4, STK32C, LRRC27, PWWP2B, V_4716_LC12779_Wong et al. (2007), V_4717_LC12807_Wong et al. (2007), V_4718_LC12807_Wong et al. V_0407, V_1491, V_2893, V_2894, V_2895, V_3826, V_3827, V_3828, V_3829, V_4716, V_4717, 13 10 26 1 C10orf91, INPP5A, NKX6-2, C10orf92, C10orf93 (2007), V_4719_LC12807_Wong et al. (2007), V_4720_LC12807_Wong et al. (2007), V_4718, V_4719, V_4720, V_4721, V_4722, V_4723, V_6850, V_6851, V_8262, V_8669, V_9646, V_4721_LC12807_Wong et al. (2007), V_4722_LC12807_Wong et al. (2007), V_4723_LC12807_Wong et al. V_22563, V_23379, V_23380, V_23381, V_23382 (2007) 11 q12.1 58726930 60072908 20% FAM111B, FAM111A, DTX4, MPEG1, OR5AN1, OR5A2, OR5A1, OR4D6, OR4D11, OR4D9, OSBP, PATL1, OR10V1, STX3, MRPL16, GIF, TCN1, PLAC1L, V_4746_LC13237_Wong et al. (2007) V_0972, V_3853, V_4746, V_6929 14 9 26 1 MS4A3, MS4A2, MS4A6A, MS4A4E, MS4A4A 11 q13.4 72057159 72231265 36% CLPB 10 13 22 5 12 q13.11 47189926 48682140 30% SLC38A4, AMIGO2, FAM113B, RPAP3, RAPGEF3, SLC48A1, HDAC7, VDR, TMEM106C, COL2A1, SENP1, PFKM, ASB8, C12orf68, OR10AD1 V_4777_LC14039_Wong et al. (2007) V_1910, V_4777 10 13 25 2 12 q13.11-q13.2 49030446 56182639 50% C12orf41, CCNT1, ADCY6, CACNB3, DDX23, RND1, CCDC65, FKBP11, ARF3, WNT10B, WNT1, DDN, PRKAG1, MLL2, RHEBL1, DHH, LMBR1L, TUBA1B, hsa-mir-1293, hsa-mir-196a-2, hsa-mir-615, hsa-mir-148b V_0164_LC14085_Iafrate et al. (2004), V_4778_LC14057_Wong et al. (2007), V_4780_LC14080_Wong et al. V_0164, V_0429, V_1501, V_1911, V_1912, V_1913, V_1914, V_2984, V_3889, V_3890, V_3891, 6 171710 TUBA1A, TUBA1C, PRPH, TROAP, C1QL4, DNAJC22, SPATS2, KCNH3, MCRS1, FAM186B, PRPF40B, FMNL3, TMBIM6, KIAA1602, BCDIN3D, FAIM2, (2007) V_4778, V_4780, V_5668, V_8020, V_8730, V_9207, V_9694, V_9695, V_22920, V_23297 AQP2, AQP5, AQP6, RACGAP1, ACCN2, SMARCD1, GPD1, C12orf62, LASS5, LIMA1, FAM186A, LARP4, DIP2B, ATF1, METTL7A, HIGD1C, SLC11A2, LETMD1, CSRNP2, TFCP2, POU6F1, DAZAP2, BIN2, CELA1, GALNT6, SLC4A8, SCN8A, FIGNL2, ANKRD33, ACVRL1, ACVR1B, GRASP, NR4A1, C12orf44, KRT80, KRT7, KRT81, KRT86, KRT83, KRT85, KRT84, KRT82, KRT75, KRT6B, KRT6C, KRT6A, KRT5, KRT71, KRT74, KRT72, KRT73, KRT2, KRT1, KRT77, KRT76, KRT3, KRT4, KRT79, KRT78, KRT8, KRT18, EIF4B, TENC1, SPRYD3, IGFBP6, SOAT2, CSAD, ZNF740, ITGB7, RARG, MFSD5, ESPL1, PFDN5, C12orf10, AAAS, SP7, SP1, AMHR2, PRR13, PCBP2, MAP3K12, TARBP2, NPFF, ATF7, ATP5G2, CALCOCO1, HOXC13, HOXC12, HOXC11, HOXC10, HOXC9, HOXC8, HOXC4, HOXC6, HOXC5, SMUG1, CBX5, HNRNPA1, NFE2, COPZ1, GPR84, ZNF385A, ITGA5, GTSF1, NCKAP1L, PDE1B, PPP1R1A, GLYCAM1, LACRT, DCD, MUCL1, NEUROD4, OR9K2, OR10A7, OR6C74, OR6 12 q13.3 57346901 57711856 18% RDH16, GPR182, ZBTB39, TAC3, MYO1A, TMEM194A, NAB2, STAT6, LRP1, NXPH4, SHMT2, NDUFA4L2, STAC3, R3HDM2 hsa-mir-1228 V_1915, V_2985, V_3892, V_9696 15 8 26 1 12 q14.3-q15 66886819 70680624 14% GRIP1, CAND1, DYRK2, IFNG, IL26, IL22, MDM1, RAP1B, NUP107, SLC35E3, MDM2, CPM, CPSF6, LYZ, YEATS4, FRS2, CCT2, LRRC10, BEST3, RAB3IP, V_1505, V_1919, V_2990, V_3894, V_5674, V_5675, V_5676, V_6991, V_8736, V_9698, V_10399, 16 7 27 0 C12orf28, CNOT2 V_22596, V_22913, V_22995, V_23451, V_29424 12 q21.1 71876296 72198861 12% LGR5, ZFC3H1, THAP2, TMEM19, RAB21 V_7975 17 6 27 0 12 q24.11 110139708 110353822 20% C12orf34, TRPV4, GLTP, TCHP 14 9 26 1 12 q24.11-q24.12 111327065 111798032 20% CCDC63, MYL2, CUX2 V_1932 14 9 26 1 12 q24.13-q24.23 114098412 119480883 30% RBM19, TBX5, TBX3, MED13L, NCRNA00173, MAP1LC3B2, C12orf49, RNFT2, HRK, FBXW8, TESC, FBXO21, NOS1, KSR2, RFC5, WSB2, PEBP1, TAOK3, hsa-mir-620 V_4787_LC14460_Wong et al. (2007), V_4788_LC14466_Wong et al. (2007), V_4789_LC14468_Wong et al. V_0434, V_1933, V_2996, V_2997, V_4787, V_4788, V_4789, V_5693, V_5694, V_5695, V_5696, 914225 SUDS3, KIAA1853 (2007) V_5697, V_5698, V_8096, V_8162 12 q24.31-q24.32 125491108 126109321 26% BRI3BP, AACS, TMEM132B V_4793_LC14538_Wong et al. (2007) V_4793 12 11 25 2 12 q24.32 126209466 128496155 18% V_1270, V_1936, V_3900, V_6965, V_8189, V_8738, V_8739, V_10406, V_10407, V_10408 15 8 26 1 12 q24.33 131040348 132692058 18% STX2, RAN, GPR133, SFRS8, MMP17, ULK1, PUS1, EP400, EP400NL, DDX51, NOC4L, GALNT9 V_4404_LC14595_Wong et al. (2007) V_1941, V_3002, V_3903, V_4404, V_8238, V_8742, V_23435, V_23436 14 9 27 0 12 q24.33 133376971 133778461 14% GOLGA3, CHFR, ZNF605, ZNF26, ZNF84, ZNF140, ZNF10 16 7 27 0 14 q23.3 66066421 66256713 18% FUT8 15 8 26 1 14 q23.3-q24.1 67522105 69373874 20% GPHN, FAM71D, MPP5, ATP6V1D, EIF2S1, PLEK2, C14orf83, PLEKHH1, PIGH, ARG2, VTI1B, RDH11, RDH12, ZFYVE26, RAD51L1, ZFP36L1, C14orf181, V_4838_LC15719_Wong et al. (2007) V_0440, V_1953, V_4838, V_5749, V_5750, V_5751 14 9 26 1 ACTN1 14 q32.12-q32.13 93105160 95996810 18% RIN3, LGMN, GOLGA5, CHGA, ITPK1, MOAP1, C14orf109, C14orf142, UBR7, BTBD7, KIAA1409, COX8C, PRIMA1, FAM181A, ASB2, C14orf48, OTUB2, V_3065, V_3066, V_5766, V_8775, V_10451 15 8 26 1 DDX24, IFI27L1, IFI27, IFI27L2, PPP4R4, SERPINA10, SERPINA6, SERPINA2, SERPINA1, SERPINA11, SERPINA9, SERPINA12, SERPINA4, SERPINA5, SERPINA3, SERPINA13, GSC, DICER1, CLMN, C14orf49 15 q22.2 61920142 62363404 18% VPS13C, FAM148A 15 8 26 1 15 q26.2-q26.3 97727551 98906681 20% ARRDC4 V_3098, V_3981, V_7084, V_7085, V_8806, V_9754, V_23506 14 9 26 1 16 p13.13 10679747 10884354 24% TEKT5, NUBP1 13 10 25 2 16 p13.13-p13.12 11513472 13894365 22% LITAF, SNN, TXNDC11, ZC3H7A, RSL1D1, TNFRSF17, RUNDC2A, SNX29, CPPED1 V_3109, V_3110, V_8205, V_9272, V_9273, V_9274, V_10500 13 10 26 1 16 p13.12-p13.11 14727504 15550023 26% BFAR, PLA2G10, ABCC6P2, NOMO1, NPIP, PDXDC1, NTAN1, RRN3, PKD1P6, MPV17L, C16orf45 hsa-mir-1972 V_4923_LC16730_Wong et al. (2007), V_4924_LC16730_Wong et al. (2007), V_4925_LC16730_Wong et al. V_0358, V_0477, V_0478, V_0479, V_3992, V_4923, V_4924, V_4925, V_7088 12 11 25 2 (2007) 16 p13.11 15539243 16194560 20% C16orf45, KIAA0430, NDE1, MYH11, C16orf63, ABCC1 hsa-mir-484 V_2203_LC16733_Locke et al. (2006), V_2204_LC16736_Locke et al. (2006), V_4926_LC16734_Wong et al. V_2203, V_2204, V_3993, V_4926, V_7089, V_10501 14 9 26 1 (2007) 16 p13.11-p12.3 16188906 18893862 24% ABCC1, ABCC6, NOMO3, XYLT1, NOMO2, RPS15A, ARL6IP1, SMG1 V_2204_LC16736_Locke et al. (2006), V_2205_LC16736_Locke et al. (2006), V_4927_LC16736_Wong et al. V_0480, V_2204, V_2205, V_3111, V_3112, V_3993, V_3994, V_4927, V_4928, V_4929, V_4930, 13 10 25 2 (2007), V_4928_LC16736_Wong et al. (2007), V_4929_LC16736_Wong et al. (2007), V_7089, V_7091, V_8814, V_8815, V_8816, V_9756, V_9757, V_22624, V_22715, V_23126 V_4930_LC16736_Wong et al. (2007) 16 p12.2 22515131 23272458 18% NPIPL3, HS3ST2, USP31, SCNN1G V_0793_LC16761_Sharp et al. (2005), V_2207_LC16761_Locke et al. (2006), V_4933_LC16761_Wong et al. V_0323, V_0481, V_0482, V_0793, V_2207, V_3115, V_3996, V_4933, V_4934, V_5434, V_7096, 15 8 26 1 (2007), V_4934_LC16761_Wong et al. (2007) V_7097, V_8229, V_10503, V_29492, V_29493 16 p12.1 25139815 26550453 32% LCMT1, AQP8, ZKSCAN2, HS3ST4 V_4936_LC16785_Wong et al. (2007) V_3998, V_4936, V_22706, V_23080 11 12 23 4 16 p12.1-p11.2 27531807 27860986 36% GTF3C1, KIAA0556, GSG1L V_8821 10 13 22 5 16 q22.1 68870411 69321200 18% TMCO7, HAS3, CHTF8, CIRH1A, SNTB2 V_4964_LC16959_Wong et al. (2007), V_4965_LC16963_Wong et al. (2007) V_4009, V_4964, V_4965, V_7125 15 8 26 1 16 q22.1-q23.1 70780902 74846984 22% VAC14, HYDIN, FTSJD1, CALB2, ZNF23, ZNF19, CHST4, TAT, MARVELD3, PHLPPL, AP1G1, ATXN1L, ZNF821, KIAA0174, PKD1L3, DHODH, HPR, V_4966_LC16982_Wong et al. (2007), V_4967_LC16985_Wong et al. (2007) V_0489, V_3125, V_3126, V_3127, V_4011, V_4012, V_4013, V_4966, V_4967, V_5330, V_5838, 12 11 25 2 TXNL4B, DHX38, PMFBP1, ZFHX3, C16orf47, PSMD7, NPIPL2, CLEC18B, GLG1, RFWD3, MLKL, FA2H V_7127, V_7128, V_7129, V_7869, V_7934, V_8184, V_8828, V_9280, V_9763, V_10507, V_23315, V_29454, V_29455 16 q23.3 82846930 83630503 14% CDH13 V_0491, V_7135, V_7136, V_8194 16 7 27 0 17 q11.1-q12 25571803 35296414 54% WSB1, KSR1, LGALS9, NOS2, NLK, PPY2, TMEM97, IFT20, TNFAIP1, POLDIP2, SARM1, VTN, SLC46A1, SLC13A2, FOXN1, UNC119, PIGS, ALDOC, hsa-mir-451, hsa-mir-144, hsa-mir-423, hsa-mir-193a, hsa-mir-365-2, hsa-mir-632 V_0799_LC17457_Sharp et al. (2005), V_0800_LC17457_Sharp et al. (2005), V_2220_LC17457_Locke et al. V_0326, V_0339, V_0799, V_0800, V_1963, V_2220, V_2221, V_2222, V_2223, V_2224, V_3142, 4191611 SPAG5, KIAA0100, SDF2, SUPT6H, PROCA1, RAB34, RPL23A, TLCD1, NEK8, TRAF4, ERAL1, FLOT2, DHRS13, PHF12, SEZ6, PIPOX, TIAF1, MYO18A, (2006), V_2221_LC17457_Locke et al. (2006), V_2222_LC17457_Locke et al. (2006), V_3143, V_3144, V_4030, V_4031, V_4032, V_4033, V_4034, V_4999, V_5001, V_5002, V_5003, CRYBA1, NUFIP2, TAOK1, ABHD15, TP53I13, GIT1, ANKRD13B, CORO6, SSH2, EFCAB5, CCDC55, SLC6A4, BLMH, TMIGD1, CPD, GOSR1, TBC1D29, V_2223_LC17457_Locke et al. (2006), V_2224_LC17457_Locke et al. (2006), V_4999_LC17431_Wong et al. V_5004, V_5005, V_5006, V_5439, V_5860, V_7151, V_7152, V_7153, V_7154, V_7155, V_7156, CRLF3, ATAD5, C17orf42, ADAP2, RNF135, NF1, OMG, EVI2B, EVI2A, RAB11FIP4, C17orf79, UTP6, SUZ12, LRRC37B, RHOT1, RHBDL3, C17orf75, (2007), V_5001_LC17457_Wong et al. (2007), V_5002_LC17457_Wong et al. (2007), V_7157, V_7933, V_8260, V_8840, V_8841, V_8842, V_8843, V_8844, V_9770, V_9771, V_9772, ZNF207, PSMD11, CDK5R1, MYO1D, TMEM98, SPACA3, ACCN1, CCL2, CCL7, CCL11, CCL8, CCL13, CCL1, C17orf102, TMEM132E, CCT6B, ZNF830, V_5003_LC17457_Wong et al. (2007), V_5004_LC17457_Wong et al. (2007), V_5005_LC17457_Wong et al. V_23027 LIG3, RFFL, RAD51L3, FNDC8, NLE1, UNC45B, AMAC1, SLFN5, SLFN11, SLFN12, SLFN13, SLFN12L, SLFN14, PEX12, AP2B1, RASL10B, GAS2L2, (2007), V_5006_LC17473_Wong et al. (2007) C17orf50, MMP28, TAF15, C17orf66, CCL5, RDM1, LYZL6, CCL16, CCL14, CCL15, CCL23, CCL18, CCL3, CCL4, TBC1D3F, CCL3L1, CCL4L1, TBC1D3C, CCL4L2, TBC1D3G, ZNHIT3, PIGW, GGNBP2, DHRS11, MRM1, LHX1 17 q12 36166453 36342865 56% TBC1D3, TBC1D3E 5 181611 17 q21.33-q22 49538559 50718444 40% CA10 V_5019_LC17572_Wong et al. (2007) V_5019, V_5869 9 14 20 7 Supplementary Table 4 Page 2
17 q22 50957160 51655358 40% V_3150, V_7842, V_9291, V_9292, V_9293, V_10517 9 14 20 7 17 q22 53379369 56615270 52% HLF, MMD, TMEM100, PCTP, ANKFN1, NOG, C17orf67, DGKE, TRIM25, COIL, SCPEP1, RNF126P1, AKAP1, MSI2, MRPS23, CUEDC1, VEZF1, SFRS1, hsa-mir-142 V_0805_LC17601_Sharp et al. (2005), V_4410_LC17595_Wong et al. (2007) V_0805, V_4042, V_4043, V_4044, V_4410, V_7168, V_7169 6 17 18 9 DYNLL2, OR4D1, OR4D2, EPX, MKS1, LPO, MPO, BZRAP1, SUPT4H1, RNF43, HSF5, MTMR4, Sep-04 17 q22-q23.1 57250690 58158156 58% PRR11, C17orf71, GDPD1, YPEL2, DHX40, CLTC, PTRH2, TMEM49, TUBD1, RPS6KB1, RNFT1, HEATR6 hsa-mir-21 V_2230_LC17608_Locke et al. (2006), V_5020_LC17608_Wong et al. (2007) V_2230, V_4045, V_5020 5 18 16 11 17 q24.1 62942066 63422144 52% GNA13, RGS9 V_0806_LC17642_Sharp et al. (2005) V_0806, V_5875, V_5876, V_22953 5 18 18 9 17 q24.3 69992642 70393314 50% SOX9 V_5336, V_7171, V_8245, V_8852 6 17 19 8 17 q24.3 70760568 70846826 52% SLC39A11 V_5030_LC17713_Wong et al. (2007) V_5030, V_5881, V_8245 6 17 18 9 17 q25.1 71931184 72265492 56% RPL38, TTYH2 5 181710 17 q25.3 77478461 77747177 42% ENPP7 V_5041_LC17763_Wong et al. (2007), V_5042_LC17763_Wong et al. (2007) V_5041, V_5042, V_7175, V_7176, V_8266, V_23319 8 15 21 6 19 p13.3 2172382 2328917 56% DOT1L, PLEKHJ1, SF3A2, AMH, JSRP1, OAZ1, C19orf35, LINGO3, LSM7 hsa-mir-1227 V_5067_LC18671_Wong et al. (2007), V_5068_LC18671_Wong et al. (2007) V_5067, V_5068, V_8264 15 8 7 20 19 q12-q13.11 29263557 34663349 58% UQCRFS1, VSTM2B, POP4, PLEKHF1, C19orf12, CCNE1, C19orf2, ZNF536, TSHZ3, ZNF507, DPY19L3, PDCD5, ANKRD27, RGS9BP, NUDT19, TDRD12, V_5096_LC18924_Wong et al. (2007) V_3187, V_4074, V_4075, V_5096, V_7198, V_7199, V_8070, V_8114, V_9305, V_10549, V_22521, 5 181611 SLC7A9, CCDC123, C19orf40, RHPN2, GPATCH1, WDR88, LRP3, SLC7A10, CEBPG, PEPD, CHST8, KCTD15 V_22529, V_22650, V_22974, V_23082, V_23132, V_23232, V_23263, V_23561 19 q13.33-q13.43 50797363 56700843 66% MYH14, KCNC3, NAPSB, NAPSA, NR1H2, POLD1, SPIB, MYBPC2, FAM71E1, C19orf63, JOSD2, ASPDH, LRRC4B, SYT3, SHANK1, CLEC11A, GPR32, hsa-mir-99b, hsa-let-7e, hsa-mir-125a, hsa-mir-643, hsa-mir-512-1, hsa-mir-512-1, hsa-mir-1323, hsa- V_2246_LC19081_Locke et al. (2006), V_2247_LC19092_Locke et al. (2006), V_5104_LC19056_Wong et al. V_0516, V_0517, V_2246, V_2247, V_4083, V_4084, V_4085, V_5104, V_5105, V_5106, V_5107, 2 211314 ACPT, C19orf48, KLK1, KLK15, KLK3, KLK2, KLKP1, KLK4, KLK5, KLK6, KLK7, KLK8, KLK9, KLK10, KLK11, KLK12, KLK13, KLK14, ATPBD3, SIGLEC9, mir-498, hsa-mir-520e, hsa-mir-515-1, hsa-mir-519e, hsa-mir-520f, hsa-mir-515-1, hsa-mir-519c, hsa- (2007), V_5105_LC19069_Wong et al. (2007), V_5106_LC19070_Wong et al. (2007), V_5108, V_5109, V_5110, V_5111, V_5112, V_5113, V_5114, V_5957, V_5958, V_5959, V_7208, SIGLEC7, SIGLECP3, CD33, IGLON5, ETFB, CLDND2, NKG7, LIM2, SIGLEC10, SIGLEC8, CEACAM18, SIGLEC6, ZNF175, SIGLEC14, NCRNA00085, HAS1, mir-1283-1, hsa-mir-520a, hsa-mir-526b, hsa-mir-519b, hsa-mir-525, hsa-mir-523, hsa-mir-518f, hsa- V_5107_LC19073_Wong et al. (2007), V_5108_LC19073_Wong et al. (2007), V_5109_LC19078_Wong et al. V_7209, V_7210, V_7211, V_7212, V_7213, V_7214, V_8023, V_8874, V_9803, V_9804, V_10563, FPR1, FPR2, FPR3, ZNF577, ZNF649, ZNF613, ZNF615, ZNF614, ZNF841, ZNF616, ZNF836, PPP2R1A, ZNF766, ZNF480, ZNF610, ZNF528, ZNF534, mir-520b, hsa-mir-518b, hsa-mir-526a-1, hsa-mir-520c, hsa-mir-518c, hsa-mir-524, hsa-mir-517a, hsa- (2007), V_5110_LC19081_Wong et al. (2007), V_5111_LC19081_Wong et al. (2007), V_23567, V_23568 ZNF808, ZNF701, ZNF137, ZNF83, ZNF611, ZNF600, ZNF28, ZNF468, ZNF320, ZNF321, ZNF816A, ZNF160, ZNF415, ZNF347, ZNF665, ZNF818P, ZNF677, mir-519d, hsa-mir-521-2, hsa-mir-520d, hsa-mir-517b, hsa-mir-520g, hsa-mir-516b-2, hsa-mir-526a-2, V_5112_LC19081_Wong et al. (2007), V_5113_LC19081_Wong et al. (2007), V_5114_LC19090_Wong et al. VN1R2, VN1R4, ZNF525, ZNF765, ZNF761, ZNF813, ZNF331, DPRX, NLRP12, MYADM, PRKCG, CACNG7, CACNG8, CACNG6, VSTM1, NDUFA3, OSCAR, hsa-mir-518e, hsa-mir-518a-1, hsa-mir-518d, hsa-mir-516b-1, hsa-mir-518a-2, hsa-mir-517c, hsa-mir- (2007) TFPT, PRPF31, CNOT3, LENG1, TMC4, MBOAT7, TSEN34, RPS9, LILRB3, LILRB5, LILRB2, LILRA3, LILRA5, LILRA4, LAIR1, TTYH1, LENG8, LENG9, 520h, hsa-mir-521-1, hsa-mir-522, hsa-mir-519a-1, hsa-mir-527, hsa-mir-516a-1, hsa-mir-1283-2, hsa- CDC42EP5, LAIR2, KIR3DX1, LILRB1, LILRA1, LILRB4, KIR2DL4, KIR2DL1, KIR3DL1, KIR2DS4, FCAR, NCR1, NLRP7, NLRP2, GP6, RDH13, EPS8L1, mir-516a-2, hsa-mir-519a-2, hsa-mir-371, hsa-mir-372, hsa-mir-373, hsa-mir-935 PPP1R12C, TNNT1, TNNI3, C19orf51, SYT5, PTPRH, TMEM86B, HSPBP1, BRS 20 p13 90210 785327 40% DEFB126, DEFB127, DEFB128, DEFB129, DEFB132, C20orf96, ZCCHC3, SOX12, NRSN2, TRIB3, RBCK1, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, V_2249_LC19199_Locke et al. (2006), V_2250_LC19207_Locke et al. (2006), V_5120_LC19207_Wong et al. V_1991, V_2249, V_2250, V_5120, V_6039, V_6040, V_6041, V_9313 9 14 21 6 C20orf54 (2007) 20 p11.21 25414328 25628486 44% GINS1, NINL, NANP 815207 20 p11.1 25870544 26239237 40% FAM182A, C20orf191 hsa-mir-663 V_0225_LC19530_Iafrate et al. (2004), V_5130_LC19530_Wong et al. (2007) V_0225, V_4098, V_5130, V_7302, V_7303 9 14 20 7 20 q11.21 30974713 31384811 62% ASXL1, C20orf112, COMMD7, DNMT3B V_4100, V_6089, V_6090, V_6091, V_9319 4 19 15 12 20 q12-q13.12 40074407 45362416 58% CHD6, PTPRT, SFRS6, L3MBTL, SGK2, IFT52, MYBL2, GTSF1L, TOX2, JPH2, C20orf111, GDAP1L1, FITM2, R3HDML, HNF4A, C20orf62, TTPAL, SERINC3, V_3218, V_3219, V_3220, V_4102, V_6103, V_6104, V_6105, V_6106, V_6107, V_6108, V_6109, 4 191611 PKIG, ADA, WISP2, KCNK15, RIMS4, YWHAB, PABPC1L, TOMM34, STK4, KCNS1, WFDC5, WFDC12, PI3, SEMG1, SEMG2, SLPI, MATN4, RBPJL, SDC4, V_6110, V_6111, V_6112, V_6113, V_7306, V_7307, V_7308, V_7309, V_7860, V_7966, V_8885, SYS1, TP53TG5, PIGT, WFDC2, SPINT3, WFDC6, WFDC8, WFDC9, WFDC10A, WFDC11, WFDC10B, WFDC13, SPINT4, C20orf168, WFDC3, DNTTIP1, V_8886, V_8887, V_9320, V_9321, V_10582, V_22498, V_23625, V_23626 UBE2C, TNNC2, SNX21, ACOT8, ZSWIM3, ZSWIM1, C20orf165, NEURL2, CTSA, PLTP, PCIF1, ZNF335, MMP9, SLC12A5, NCOA5, CD40, CDH22, SLC35C2, ELMO2, ZNF663, ZNF840, ZNF334, C20orf123, SLC13A3, TP53RK, SLC2A10 20 q13.12 45502255 46228236 62% EYA2, ZMYND8, NCOA3 V_2251_LC19741_Locke et al. (2006), V_5139_LC19754_Wong et al. (2007) V_0538, V_0539, V_2251, V_4103, V_5139, V_6114, V_6115, V_7309, V_23627, V_23628 4 19 14 13 20 q13.32 56522923 56833379 62% C20orf85, ANKRD60, PPP4R1L 4 191512 21 q22.2 39900663 41102605 30% ERG, ETS2, C21orf104, PSMG1, BRWD1, C21orf87, HMGN1, WRB, LCA5L, SH3BGR, B3GALT5, C21orf88 V_6137, V_6138, V_29433 10 13 24 3
Losses
Chromosome Cytoband Start (bp) End (bp) Maximum Frequency Genes miRNAs aCGH copy number polymorphisms All copy number polymorphisms cluster 1 no loss cluster 1 losses cluster 2 no loss cluster 2 losses
1 p31.3 63622506 65861284 18% FOXD3, ALG6, ITGB3BP, EFCAB7, DLEU2L, PGM1, ROR1, UBE2U, CACHD1, RAVER2, JAK1, AK3L1, DNAJC6 hsa-mir-101-1 V_3292, V_5497, V_22701 15 8 26 1 1 p31.3-p31.1 66644133 79912241 30% PDE4B, SGIP1, TCTEX1D1, INSL5, WDR78, MIER1, SLC35D1, C1orf141, IL23R, IL12RB2, SERBP1, GADD45A, GNG12, DIRAS3, GPR177, RPE65, DEPDC1, hsa-mir-1262, hsa-mir-186 V_0009_LC0463_Iafrate et al. (2004), V_4229_LC0493_Wong et al. (2007), V_4230_LC0507_Wong et al. V_0009, V_0383, V_1005, V_1006, V_1009, V_1543, V_2308, V_2309, V_2310, V_2311, V_3293, 11 12 24 3 LRRC7, LRRC40, SFRS11, ANKRD13C, HHLA3, CTH, PTGER3, ZRANB2, NEGR1, LRRIQ3, TNNI3K, LRRC53, C1orf173, CRYZ, TYW3, LHX8, SLC44A5, (2007), V_4231_LC0527_Wong et al. (2007) V_3294, V_3295, V_3296, V_4229, V_4230, V_4231, V_5364, V_5500, V_5501, V_5502, V_6829, ACADM, RABGGTB, MSH4, ASB17, ST6GALNAC3, ST6GALNAC5, PIGK, AK5, ZZZ3, USP33, FAM73A, NEXN, FUBP1, DNAJB4, GIPC2, PTGFR, IFI44L, V_6830, V_6831, V_6832, V_7927, V_8064, V_8071, V_8135, V_8167, V_8916, V_8917, V_8918, IFI44, ELTD1 V_9361, V_9362, V_9363, V_9885, V_9886, V_22673, V_22923, V_23155, V_23190, V_23231, V_23369 1 p31.1 80494782 81010327 22% V_8918 14 9 25 2 1 p31.1 81792341 82372749 22% LPHN2 V_4232_LC0542_Wong et al. (2007) V_4232 14 9 25 2 1 p21.1-p13.3 104402009 107246396 24% V_0682_LC0656_Sharp et al. (2005), V_4239_LC0656_Wong et al. (2007) V_0258, V_0384, V_0682, V_2316, V_2317, V_3303, V_4239, V_6769, V_7994, V_8324, V_9366, 13 10 25 2 V_9888, V_23022, V_23333 1 p13.3 108414352 108734932 18% VAV3, SLC25A24 V_2049_LC0673_Locke et al. (2006) V_2049, V_3305, V_6771, V_6772 15 8 26 1 2 p25.1 7948829 9308358 10% ID2, KIDINS220, MBOAT2 V_5204 18 5 27 0 2 p25.1-p24.1 10912285 20508235 12% ATP6V1C2, PDIA6, KCNF1, C2orf50, PQLC3, ROCK2, E2F6, NTSR2, LPIN1, TRIB2, FAM84A, NBAS, DDX1, MYCN, FAM49A, RAD51AP2, VSNL1, SMC6, V_0689_LC1609_Sharp et al. (2005), V_4275_LC1625_Wong et al. (2007) V_0522, V_0689, V_1028, V_1348, V_1566, V_1567, V_2369, V_2370, V_2371, V_2372, V_2373, 17 6 27 0 GEN1, MSGN1, KCNS3, NT5C1B, OSR1, TTC32, WDR35, MATN3, LAPTM4A, SDC1, PUM2 V_3344, V_3345, V_4275, V_5207, V_5970, V_7232, V_7233, V_7236, V_7868, V_8359, V_8360, V_8361, V_8362, V_8363, V_8364, V_8365, V_8937, V_9397, V_9398, V_9921, V_9922, V_9923, V_22562, V_22655, V_22748, V_23052, V_23595 2 p24.1 20797047 21147289 10% HS1BP3, GDF7, C2orf43 18 5 27 0 2 q13 110693019 111300634 10% LIMS3, MALL, NPHP1, RGPD6 V_8955, V_22955, V_23253 18 5 27 0 2 q14.3 123814493 125129507 12% CNTNAP5 17 6 27 0 2 q14.3 125199224 127536401 10% CNTNAP5, GYPC V_0530, V_3390, V_5997, V_7844, V_8386, V_22826, V_23176, V_23581 18 5 27 0 2 q21.1 130796960 132051344 18% CCDC74B, SMPD4, FAM128B, TUBA3E, CCDC115, IMP4, PTPN18, POTEG, CFC1B, CFC1, ACTBL2, GPR148, FAM123C, ARHGEF4, FAM168B, PLEKHB2, V_0025_LC2234_Iafrate et al. (2004) V_0025, V_0269, V_1597, V_2408, V_2409, V_3393, V_8387, V_8388, V_8389, V_9430, V_9431, 13 10 25 2 POTEE, C2orf14 V_9961, V_23583 2 q21.2-q22.3 132590956 147427862 36% ZNF72, C21orf99, GPR39, LYPD1, MGAT5, TMEM163, ACMSD, CCNT2, YSK4, RAB3GAP1, ZRANB3, R3HDM1, UBXN4, LCT, MCM6, DARS, CXCR4, hsa-mir-663b, hsa-mir-128-1 V_4308_LC2246_Wong et al. (2007), V_4309_LC2319_Wong et al. (2007) V_0531, V_0973, V_1035, V_1598, V_2410, V_2411, V_2412, V_3393, V_3394, V_4308, V_4309, 815225 THSD7B, HNMT, SPOPL, NXPH2, LRP1B, KYNU, ARHGAP15, GTDC1, ZEB2 V_5998, V_5999, V_6000, V_6001, V_6002, V_6003, V_6004, V_7231, V_7234, V_7235, V_7881, V_7904, V_8172, V_8390, V_9432, V_9433, V_9434, V_9962, V_22548, V_22873, V_22992, V_23584, V_23585, V_29406, V_29428 2 q22.3 147505377 147857286 28% V_23173 12 11 24 3 2 q22.3-q24.3 148473008 166701980 28% ACVR2A, ORC4L, MBD5, EPC2, KIF5C, LYPD6B, LYPD6, RND3, RBM43, NMI, TNFAIP6, RIF1, NEB, ARL5A, CACNB4, STAM2, FMNL2, PRPF40A, ARL6IP6, V_4310_LC2333_Wong et al. (2007), V_4311_LC2333_Wong et al. (2007), V_4312_LC2343_Wong et al. V_0270, V_0532, V_1036, V_1037, V_1038, V_1356, V_1357, V_1358, V_1359, V_1599, V_1600, 11 12 24 3 RPRM, GALNT13, KCNJ3, NR4A2, GPD2, GALNT5, ERMN, CYTIP, ACVR1C, ACVR1, UPP2, CCDC148, PKP4, DAPL1, TANC1, WDSUB1, BAZ2B, Mar-07, (2007), V_4313_LC2352_Wong et al. (2007), V_4314_LC2392_Wong et al. (2007), V_4315_LC2398_Wong et V_1601, V_2413, V_2414, V_3395, V_3396, V_3397, V_3398, V_4310, V_4311, V_4312, V_4313, LY75, PLA2R1, ITGB6, C2orf12, RBMS1, TANK, PSMD14, TBR1, SLC4A10, DPP4, GCG, FAP, IFIH1, GCA, KCNH7, FIGN, GRB14, COBLL1, SLC38A11, al. (2007), V_4316_LC2400_Wong et al. (2007), V_4317_LC2405_Wong et al. (2007) V_4314, V_4315, V_4316, V_4317, V_6005, V_6006, V_6007, V_6008, V_6009, V_7237, V_7238, SCN3A, SCN2A, CSRNP3, GALNT3 V_7239, V_7240, V_7241, V_7965, V_8391, V_8392, V_8393, V_8960, V_8961, V_9963, V_9964, V_9965, V_9966, V_9967, V_9968, V_22710, V_22988, V_23012, V_23586, V_23587, V_23588 2 q24.3 167696725 169509419 10% XIRP2, B3GALT1, STK39, LASS6 V_4318_LC2416_Wong et al. (2007) V_0533, V_3399, V_4318, V_23589 18 5 27 0 2 q31.2-q32.1 179478863 188455993 16% TTN, CCDC141, SESTD1, ZNF385B, CWC22, UBE2E3, ITGA4, CERKL, NEUROD1, SSFA2, PPP1R1C, PDE1A, DNAJC10, FRZB, NCKAP1, DUSP19, NUP35, hsa-mir-1258 V_4320_LC2500_Wong et al. (2007), V_4321_LC2510_Wong et al. (2007), V_4322_LC2517_Wong et al. V_0534, V_1039, V_1040, V_1041, V_1360, V_1602, V_2417, V_2418, V_2419, V_3401, V_3402, 15 8 26 1 ZNF804A, FSIP2, ZC3H15, ITGAV, FAM171B, ZSWIM2, CALCRL, TFPI (2007) V_3403, V_3404, V_4320, V_4321, V_4322, V_6013, V_6014, V_6015, V_8225, V_8261, V_8394, V_8962, V_8963, V_9435, V_9436, V_9437, V_9438, V_9970, V_9971, V_9972, V_9973, V_9974, V_22852, V_22881, V_22885, V_23594, V_29437 2 q32.3 194378724 195676923 10% V_4323_LC2558_Wong et al. (2007) V_2420, V_4323, V_6018, V_7988, V_9439, V_22842, V_23597 18 5 27 0 2 q33.1 199221562 201273331 10% SATB2, C2orf69, C2orf60, C2orf47 V_8174 18 5 27 0 2 q33.2-q33.3 204429785 205468037 10% CD28, CTLA4, ICOS, PARD3B V_2421, V_3405, V_8964 18 5 27 0 2 q33.3-q35 208498231 217988392 22% CCNYL1, FZD5, PLEKHM3, CRYGD, CRYGC, CRYGB, CRYGA, C2orf80, IDH1, PIKFYVE, PTH2R, MAP2, C2orf21, RPE, C2orf67, ACADL, MYL1, LANCL1, hsa-mir-548f-2 V_4324_LC2633_Wong et al. (2007), V_4325_LC2638_Wong et al. (2007), V_4326_LC2650_Wong et al. V_0271, V_1046, V_1606, V_2422, V_2423, V_2424, V_3406, V_4324, V_4325, V_4326, V_6025, 11 12 24 3 CPS1, ERBB4, IKZF2, SPAG16, BARD1, ABCA12, ATIC, FN1, MREG, PECR, TMEM169, XRCC5, Mar-04, SMARCAL1, RPL37A, IGFBP2, IGFBP5, TNP1 (2007) V_6026, V_6027, V_6028, V_6029, V_7245, V_7246, V_7820, V_7946, V_8966, V_9440, V_9441, V_9976, V_9977, V_22648, V_23599, V_23600 2 q35-q36.3 219167122 228372227 20% PNKD, C2orf62, SLC11A1, CTDSP1, VIL1, USP37, RQCD1, PLCD4, ZNF142, BCS1L, RNF25, STK36, TTLL4, CYP27A1, PRKAG3, WNT6, WNT10A, CDK5R2, hsa-mir-26b, hsa-mir-375, hsa-mir-153-1 V_0030_LC2686_Iafrate et al. (2004), V_4328_LC2702_Wong et al. (2007) V_0030, V_2425, V_3407, V_4328, V_6030, V_6031, V_6032, V_6033, V_6034, V_6035, V_7248, 13 10 26 1 FEV, CRYBA2, CCDC108, IHH, NHEJ1, SLC23A3, C2orf24, FAM134A, ZFAND2B, ATG9A, ABCB6, ANKZF1, GLB1L, STK16, TUBA4A, TUBA4B, DNAJB2, V_7249, V_9442, V_9978, V_9979, V_22528, V_22617, V_22993, V_23602, V_23603, V_23604 PTPRN, DNPEP, DES, SPEG, GMPPA, ACCN4, CHPF, TMEM198, OBSL1, INHA, STK11IP, SLC4A3, EPHA4, PAX3, CCDC140, SGPP2, FARSB, MOGAT1, ACSL3, KCNE4, SCG2, AP1S3, WDFY1, MRPL44, SERPINE2, FAM124B, CUL3, DOCK10, IRS1, RHBDD1, COL4A4, COL4A3, MFF, TM4SF20, AGFG1
2 q37.1 231087013 232616309 10% SP110, SP140, SP140L, SP100, CAB39, ITM2C, GPR55, SPATA3, C2orf72, PSMD1, HTR2B, ARMC9, B3GNT7, NCL, NMUR1, C2orf57, PTMA, PDE6D V_3408, V_6036 18 5 27 0
3 p24.3 19975088 21550132 12% EFHB, RAB5A, C3orf48, KAT2B, SGOL1, ZNF385D V_4332_LC3007_Wong et al. (2007) V_2443, V_3419, V_4332, V_5208, V_5371, V_6164, V_6165, V_7404, V_8050, V_8415, V_8416, 17 6 27 0 V_8417, V_9447, V_23063 3 p22.3 34389236 35840837 10% hsa-mir-128-2 V_7407, V_8042, V_8420 18 5 27 0 3 p22.2-p22.1 38386400 41695099 10% XYLB, ACVR2B, EXOG, SCN5A, SCN10A, SCN11A, WDR48, GORASP1, TTC21A, CSRNP1, XIRP1, CX3CR1, CCR8, SLC25A38, RPSA, MOBP, MYRIP, V_2447, V_2448, V_3426, V_3427, V_7409, V_7985, V_8981, V_9992, V_29429 18 5 27 0 EIF1B, ENTPD3, RPL14, ZNF619, ZNF620, ZNF621, CTNNB1, ULK4 3 p12.3 75947546 76890980 18% ROBO2 V_2462, V_3434, V_3435, V_3436, V_10003, V_6190, V_6191, V_6192, V_6193 15 8 26 1 3 p12.3-p12.2 77146580 79634238 18% ROBO2, ROBO1 V_2463, V_3437, V_5368, V_6194, V_22741 15 8 26 1 3 p12.2 80261767 81185865 16% V_5368, V_6195, V_8048, V_23692 16 7 26 1 3 p12.1 81872888 82344618 14% V_4343_LC3365_Wong et al. (2007) V_4343 16 7 27 0 3 p11.1-q11.1 84830918 88182987 10% CADM2, VGLL3, CHMP2B, POU1F1, HTR1F, CGGBP1 V_0695_LC3383_Sharp et al. (2005), V_4344_LC3397_Wong et al. (2007) V_0557, V_0695, V_4344, V_10004, V_9451, V_9452 18 5 27 0 3 q11.2 94014304 94529871 10% 18 5 27 0 3 q11.2 95035470 95947771 10% V_22638 18 5 27 0 4 p16.1-p14 9371310 40328829 28% DEFB131, DRD5, SLC2A9, WDR1, ZNF518B, CLNK, HS3ST1, RAB28, NKX3-2, BOD1L, CPEB2, C1QTNF7, FBXL5, BST1, CD38, FGFBP1, FGFBP2, TAPT1, hsa-mir-548i-2, hsa-mir-572, hsa-mir-218-1, hsa-mir-573, hsa-mir-574 V_0045_LC4542_Iafrate et al. (2004), V_0130_LC4464_Iafrate et al. (2004), V_2070_LC4236_Locke et al. V_0045, V_0130, V_0274, V_0275, V_0347, V_0571, V_1071, V_1072, V_1073, V_1074, V_1075, 11 12 25 2 LDB2, QDPR, CLRN2, LAP3, MED28, FAM184B, C4orf30, NCAPG, LCORL, SLIT2, PACRGL, KCNIP4, GPR125, PPARGC1A, DHX15, SOD3, CCDC149, LGI2, (2006), V_4379_LC4291_Wong et al. (2007), V_4380_LC4361_Wong et al. (2007), V_4381_LC4395_Wong et V_1076, V_1077, V_1384, V_1385, V_1386, V_1387, V_1663, V_1664, V_1665, V_1666, V_1667, SEPSECS, PI4K2B, ZCCHC4, ANAPC4, SLC34A2, RBPJ, CCKAR, TBC1D19, STIM2, PCDH7, ARAP2, KIAA1239, C4orf19, RELL1, PGM2, TBC1D1, KLF3, al. (2007), V_4382_LC4395_Wong et al. (2007), V_4383_LC4429_Wong et al. (2007), V_1668, V_1669, V_1670, V_2070, V_2497, V_2498, V_2499, V_2500, V_2501, V_2502, V_2503, TLR10, TLR1, TLR6, FAM114A1, TMEM156, KLHL5, WDR19, RFC1, KLB, RPL9, LIAS, UGDH, C4orf34, UBE2K, PDS5A, N4BP2, RHOH V_4384_LC4441_Wong et al. (2007), V_4385_LC4531_Wong et al. (2007), V_4386_LC4542_Wong et al. V_2504, V_2505, V_2506, V_2507, V_2508, V_2509, V_2510, V_2511, V_2512, V_2513, V_2514, (2007), V_4387_LC4546_Wong et al. (2007), V_4388_LC4555_Wong et al. (2007), V_4389_LC4569_Wong et V_2515, V_2516, V_2517, V_3479, V_3480, V_3481, V_3482, V_3483, V_3484, V_3485, V_3486, al. (2007) V_3487, V_3488, V_3489, V_3490, V_3491, V_3492, V_4379, V_4380, V_4381, V_4382, V_4383, V_4384, V_4385, V_4386, V_4387, V_4388, V_4389, V_10034, V_10035, V_10036, V_10037, V_10038 V_10039, V_10040, V_10041, V_10042, V_5217, V_6240, V_6241, V_6242, V_6243, V_6244, V_6245, V_6246, V_6247, V_6248, V_6249, V_6250, V_6251, V_6252, V_6253, V_6254, V_6255, V_6256, V_6257, V_6258, V_7424, V_7442, V_7443, V_7458, V_7459, V_7993, V_8044, V_8206, V_8443, V_8444, V_8996, V_8997, V_8998, V_8999, V_9000, V_9471, V_9472, V_22668, V_22696, V_22722, V_22789, V_22799, V_22805, V_22897, V_23073, V_23075, V_23093, V_23112, V_23146, V_23216, 4 p13-q35.2 43050171 190899780 28% KCTD8, YIPF7, GUF1, GNPDA2, GABRG1, GABRA2, COX7B2, GABRA4, GABRB1, COMMD8, ATP10D, CORIN, NFXL1, CNGA1, NIPAL1, TXK, TEC, hsa-mir-1269, hsa-mir-575, hsa-mir-1255a, hsa-mir-576, hsa-mir-297, hsa-mir-367, hsa-mir-302d, hsa- V_0047_LC5166_Iafrate et al. (2004), V_0048_LC5301_Iafrate et al. (2004), V_0049_LC5396_Iafrate et al. V_0047, V_0048, V_0049, V_0050, V_0051, V_0052, V_0053, V_0054, V_0276, V_0277, V_0278, 617243 SLAIN2, SLC10A4, ZAR1, FRYL, OCIAD1, OCIAD2, DCUN1D4, LRRC66, SGCB, SPATA18, USP46, RASL11B, SCFD2, FIP1L1, LNX1, CHIC2, GSX2, mir-302a, hsa-mir-302c, hsa-mir-302b, hsa-mir-577, hsa-mir-548g, hsa-mir-578, hsa-mir-1979, hsa-mir- (2004), V_0050_LC5522_Iafrate et al. (2004), V_0051_LC5838_Iafrate et al. (2004), V_0052_LC5911_Iafrate V_0572, V_0573, V_0574, V_0575, V_0576, V_0577, V_0578, V_0579, V_0580, V_0581, V_0582, PDGFRA, KIT, KDR, SRD5A3, TMEM165, CLOCK, PDCL2, NMU, EXOC1, CEP135, KIAA1211, AASDH, PPAT, PAICS, SRP72, ARL9, HOPX, SPINK2, REST, 1305 et al. (2004), V_0053_LC5929_Iafrate et al. (2004), V_0054_LC6039_Iafrate et al. (2004), V_0700, V_0701, V_0702, V_0703, V_0966, V_0981, V_1078, V_1079, V_1080, V_1081, V_1082, C4orf14, POLR2B, IGFBP7, LPHN3, RPS12P9, RPS15AP17, EPHA5, CENPC1, STAP1, UBA6, GNRHR, TMPRSS11D, TMPRSS11A, TMPRSS11F, V_0700_LC4677_Sharp et al. (2005), V_0701_LC4909_Sharp et al. (2005), V_0702_LC6244_Sharp et al. V_1083, V_1084, V_1085, V_1087, V_1088, V_1089, V_1090, V_1091, V_1092, V_1093, V_1094, TMPRSS11B, YTHDC1, MT1P2, TMPRSS11E, UGT2B17, UGT2B10, UGT2A3, UGT2B11, UGT2B7, UGT2B28, UGT2B4, UGT2A1, SULT1B1, SULT1E1, (2005), V_0703_LC6244_Sharp et al. (2005), V_2071_LC4709_Locke et al. (2006), V_2072_LC4898_Locke et V_1095, V_1096, V_1097, V_1098, V_1099, V_1100, V_1101, V_1102, V_1103, V_1104, V_1105, CSN1S1, CSN2, STATH, HTN3, HTN1, CSN1S2A, C4orf40, ODAM, C4orf7, CSN3, C4orf35, SMR3A, SMR3B, PROL1, MUC7, AMTN, AMBN, ENAM, IGJ, al. (2006), V_2073_LC4909_Locke et al. (2006), V_2074_LC5743_Locke et al. (2006), V_1106, V_1107, V_1108, V_1109, V_1110, V_1111, V_1112, V_1113, V_1114, V_1115, V_1116, UTP3, RUFY3, GRSF1, MOBKL1A, DCK, SLC4A4, GC, NPFFR2, ADAMTS3, COX18, ANKRD17, ALB, AFP, AFM, RASSF6, IL8, CXCL6, PPBPL1, PF4V1, V_2075_LC5743_Locke et al. (2006), V_2076_LC5743_Locke et al. (2006), V_4392_LC4693_Wong et al. V_1388, V_1389, V_1390, V_1391, V_1392, V_1393, V_1394, V_1395, V_1396, V_1397, V_1398, CXCL1, PF4, PPBP, CXCL5, CXCL3, PPBPL2, CXCL2, MTHFD2L, EPGN, EREG, AREG, AREGB, BTC, RCHY1, THAP6, C4orf26, CDKL2, G3BP2, USO1, (2007), V_4393_LC4704_Wong et al. (2007), V_4394_LC4709_Wong et al. (2007), V_4395_LC4720_Wong et V_1399, V_1400, V_1401, V_1402, V_1403, V_1404, V_1405, V_1406, V_1407, V_1408, V_1409, PPEF2, NAAA, SDAD1, CXCL9, ART3, CXCL10, CXCL11, RPL36P8, NUP54, SCARB2, FAM47E, STBD1, CCDC158, SHROOM3, ANKRD56, Sep-11, CCNI, al. (2007), V_4396_LC4722_Wong et al. (2007), V_4397_LC4723_Wong et al. (2007), V_1410, V_1671, V_1672, V_1673, V_1674, V_1675, V_1676, V_1677, V_1678, V_1679, V_1680, CCNG2, CXCL13, CNOT6L, MRPL1, FRAS1, ANXA3, BMP2K, PAQR3, ARD1B, V_4398_LC4750_Wong et al. (2007), V_4399_LC4933_Wong et al. (2007), V_4401_LC5023_Wong et al. V_1681, V_1682, V_1683, V_1684, V_1685, V_1686, V_1687, V_1688, V_1689, V_1690, V_1691, (2007), V_4402_LC5044_Wong et al. (2007), V_4405_LC5085_Wong et al. (2007), V_4406_LC5192_Wong et V_1692, V_1693, V_1694, V_1695, V_1696, V_1697, V_1698, V_1699, V_2071, V_2072, V_2073, al. (2007), V_4407_LC5203_Wong et al. (2007), V_440 V_2074, V_2075, V_2076, V_2519, V_2520, V_2521, V_2522, V_2523, V_2524, V_2525, V_2526, 5 p13.1-q11.2 41432132 50547337 22% PLCXD3, OXCT1, C5orf51, FBXO4, GHR, SEPP1, C5orf39, ZNF131, HMGCS1, CCL28, C5orf28, C5orf34, PAIP1, NNT, FGF10, MRPS30, HCN1, EMB, PARP8 V_4441_LC6869_Wong et al. (2007), V_4442_LC6871_Wong et al. (2007), V_4443_LC6881_Wong et al. V_3554, V_4441, V_4442, V_4443, V_10111, V_10112, V_10113, V_10114, V_10115, V_6396, V_6397 13 10 26 1 (2007) V_9510, V_22599, V_22611, V_22614, V_23032, V_23767, V_23768, V_23769 5 q11.2 56996630 58381226 20% PLK2, GAPT, RAB3C, PDE4D V_0588, V_6407, V_6408, V_7870, V_8104, V_22659, V_22845, V_23131, V_23188, V_23772 14 9 26 1 5 q12.1 58923843 59241863 22% PDE4D hsa-mir-582 14 9 25 2 6 p24.3 8203453 8649634 10% SLC35B3 18 5 27 0 6 p24.3 9332432 9817268 10% V_6477, V_8507 17 6 27 0 6 p24.3-p24.2 10235373 10731145 10% TFAP2A, C6orf218, GCNT2, GCNT6, C6orf52, PAK1IP1, TMEM14C V_1418, V_1419, V_1704, V_2619, V_3594, V_10141, V_7515, V_9030 18 5 27 0 6 p12.1-q13 53616066 72522068 30% LRRC1, C6orf142, TINAG, FAM83B, HCRTR2, GFRAL, HMGCLL1, BMP5, COL21A1, DST, BEND6, KIAA1586, ZNF451, BAG2, RAB23, PRIM2, KHDRBS2, hsa-mir-30c-2, hsa-mir-30a V_0080_LC8417_Iafrate et al. (2004), V_0081_LC8420_Iafrate et al. (2004), V_0082_LC8431_Iafrate et al. V_0080, V_0081, V_0082, V_0083, V_0086, V_0287, V_0288, V_0289, V_0360, V_1128, V_1421, 815243 FKBP1C, LGSN, PTP4A1, PHF3, EYS, BAI3, LMBRD1, COL19A1, COL9A1, FAM135A, C6orf57, SMAP1, B3GAT2, OGFRL1 (2004), V_0083_LC8439_Iafrate et al. (2004), V_0086_LC8475_Iafrate et al. (2004), V_0360_LC8473_Shaw- V_1422, V_1712, V_2632, V_2633, V_2634, V_2635, V_2636, V_2637, V_2638, V_2639, V_3614, Smith et al. (2004), V_4496_LC8416_Wong et al. (2007), V_4497_LC8475_Wong et al. (2007) V_3615, V_3616, V_3617, V_3618, V_3619, V_4496, V_4497, V_10153, V_10154, V_10155, V_5224, V_5391, V_6495, V_6496, V_6497, V_6498, V_6499, V_6500, V_7580, V_7581, V_7582, V_7824, V_7872, V_8041, V_8046, V_8228, V_8516, V_8517, V_8518, V_8519, V_8520, V_8521, V_9034, V_9531, V_9532, V_9533, V_9534, V_9535, V_9536, V_22518, V_22523, V_22573, V_22719, V_22720 V_22762, V_22811, V_22981, V_23031, V_23062, V_23065, V_23159, V_23260, V_23806, V_23807, V_23808, V_23809 6 q13-q15 73627395 91570472 26% KCNQ5, KHDC1, DPPA5, C6orf221, OOEP, DDX43, C6orf150, MTO1, EEF1A1, SLC17A5, CD109, COL12A1, COX7A2, TMEM30A, FILIP1, SENP6, MYO6, V_0087_LC8488_Iafrate et al. (2004), V_4498_LC8515_Wong et al. (2007), V_4499_LC8546_Wong et al. V_0087, V_0290, V_1129, V_1130, V_1131, V_1133, V_1423, V_1424, V_1713, V_1714, V_1715, 10 13 25 2 IMPG1, HTR1B, IRAK1BP1, PHIP, HMGN3, LCA5, SH3BGRL2, ELOVL4, TTK, BCKDHB, FAM46A, IBTK, TPBG, UBE2CBP, DOPEY1, PGM3, RWDD2A, ME1, (2007), V_4500_LC8569_Wong et al. (2007), V_4501_LC8583_Wong et al. (2007) V_2640, V_2641, V_2642, V_2643, V_2644, V_2645, V_2646, V_2647, V_3620, V_3621, V_3622, PRSS35, SNAP91, RIPPLY2, CYB5R4, MRAP2, KIAA1009, TBX18, NT5E, SNX14, SYNCRIP, FAM165A, HTR1E, CGA, ZNF292, GJB7, C6orf162, C6orf163, V_3623, V_3624, V_3625, V_3626, V_3627, V_3628, V_4498, V_4499, V_4500, V_4501, V_10156, C6orf164, C6orf165, SLC35A1, RARS2, ORC3L, AKIRIN2, SPACA1, CNR1, RNGTT, PNRC1, PM20D2, GABRR1, GABRR2, UBE2J1, RRAGD, ANKRD6, V_10157, V_10158, V_10159, V_10160, V_10161, V_6502, V_6503, V_7583, V_7585, V_7586, V_7587 MDN1, CASP8AP2, GJA10, BACH2, MAP3K7 V_7589, V_7590, V_7591, V_7864, V_7903, V_7979, V_7980, V_8182, V_8522, V_8523, V_9035, V_9036, V_9037, V_9537, V_9538, V_9539, V_9540, V_9541, V_22628, V_22649, V_22753, V_22836, V_22841, V_22854, V_23055, V_23115, V_23284, V_23810, V_23811, V_23812, V_23813, V_23814, V_23815, V_23816 6 q15-q16.3 91752778 102779543 30% EPHA7, MANEA, FUT9, KIAA0776, FHL5, GPR63, NDUFAF4, KLHL32, C6orf167, POU3F2, FBXL4, C6orf168, COQ3, SFRS18, USP45, CCNC, PRDM13, hsa-mir-2113 V_4502_LC8592_Wong et al. (2007) V_1134, V_1135, V_1136, V_1716, V_2648, V_2649, V_3629, V_4502, V_10162, V_10163, V_5225, 10 13 24 3 MCHR2, SIM1, ASCC3, GRIK2 V_5392, V_5393, V_5394, V_6504, V_7511, V_7908, V_8074, V_8524, V_8525, V_9038, V_9039, V_9542, V_22653, V_23778, V_23817, V_23818 6 q21-q22.1 113867745 117905873 18% MARCKS, HDAC2, HS3ST5, FRK, NT5DC1, COL10A1, TSPYL1, DSE, FAM26F, BET3L, FAM26E, FAM26D, RWDD1, RSPH4A, ZUFSP, KPNA5, FAM162B, V_2652, V_2653, V_3633, V_3634, V_3635, V_7518, V_7519, V_7520, V_7871, V_8528, V_9545, 15 8 26 1 GPRC6A, RFX6, VGLL2, ROS1, DCBLD1, GOPC V_22768, V_23779 6 q22.31 119656571 121736082 24% MAN1A1, C6orf170 V_0291, V_2654, V_6509, V_7521, V_9546 13 10 25 2 6 q22.31 122240934 123149062 22% HSF2, SERINC1, PKIB, FABP7, SMPDL3A V_3636, V_6510 14 9 25 2 6 q22.32-q22.33 127035964 129987712 22% RSPO3, RNF146, ECHDC1, C6orf174, C6orf58, TSEPA, PTPRK, LAMA2, ARHGAP18 V_0091_LC8757_Iafrate et al. (2004) V_0091, V_3637, V_3638, V_7522, V_7523, V_7897, V_22733, V_23780 14 9 25 2 6 q23.2 133241412 133981234 16% EYA4 V_3639, V_9549, V_22621, V_23157, V_23781 16 7 26 1 8 p22 17671853 18190462 16% FGL1, PCM1, ASAH1, NAT1 V_4585_LC10449_Wong et al. (2007) V_3724, V_4585 16 7 26 1 8 p12 31412737 33544931 22% NRG1, FUT10, MAK16, C8orf41, RNF122, DUSP26 V_0632, V_6603, V_6604, V_6605, V_6606, V_6607, V_9090, V_22849, V_23206, V_23871 14 9 25 2 9 p24.3-p22.1 1091237 19754257 18% SMARCA2, VLDLR, KCNV2, KIAA0020, CARM1L, RFX3, GLIS3, SLC1A1, C9orf68, PPAPDC2, CDC37L1, AK3, RCL1, JAK2, INSL6, INSL4, RLN2, RLN1, hsa-mir-101-2 V_0127_LC11147_Iafrate et al. (2004), V_0128_LC11164_Iafrate et al. (2004), V_4615_LC11143_Wong et al. V_0127, V_0128, V_0649, V_1211, V_1212, V_1213, V_1470, V_1471, V_1472, V_1810, V_1811, 14 9 26 1 C9orf46, CD274, PDCD1LG2, KIAA1432, ERMP1, KIAA2026, MLANA, RANBP6, IL33, TPD52L3, UHRF2, GLDC, SNRPEL1, KDM4C, C9orf123, PTPRD, (2007) V_1812, V_1813, V_1814, V_1815, V_1816, V_2782, V_2783, V_2784, V_2785, V_2786, V_2787, TYRP1, C9orf150, MPDZ, C9orf146, NFIB, ZDHHC21, CER1, FREM1, TTC39B, SNAPC3, PSIP1, C9orf93, C9orf92, BNC2, CNTLN, SH3GL2, ADAMTSL1, V_2788, V_2789, V_2790, V_2791, V_2792, V_2793, V_2794, V_2795, V_2796, V_2797, V_2798, FAM154A, RRAGA, HAUS6, ADFP, DENND4C, RPS6, ACER2, SLC24A2 V_2799, V_2800, V_2801, V_2802, V_2803, V_3755, V_3756, V_3757, V_3758, V_3759, V_3760, V_3761, V_3762, V_3763, V_4615, V_5260, V_5261, V_5409, V_5410, V_5411, V_6676, V_6677, V_6678, V_6679, V_6680, V_7719, V_7720, V_7737, V_7747, V_7833, V_7859, V_8006, V_8026, V_8113, V_8159, V_8207, V_8237, V_8619, V_8620, V_8621, V_8622, V_9103, V_9104, V_9105, V_9106, V_9107, V_9108, V_9109, V_9110, V_9111, V_9112, V_9113, V_9114, V_9115, V_9116, V_9117, V_9118, V_9119, V_9120, V_9121, V_9122, V_9610, V_9611, V_9612, V_10282, V_10283, V_10284, V_10285, V_10286, V_10287, V_10288, V_10289, V_10290, V_10291, V_10292, V_10293, V_10294, V_10295, V_22543, V_22662, V_22729, V_22831, V_23178, V_23883, V_23898, V_23904
9 p21.1 28864937 31877461 16% hsa-mir-873 V_4617_LC11257_Wong et al. (2007) V_1473, V_1474, V_1821, V_2812, V_2813, V_3765, V_3766, V_3767, V_3768, V_4617, V_6684, 16 7 26 1 V_7839, V_8173, V_8625, V_8626, V_9129, V_9130, V_9131, V_9132, V_9133, V_10299 9 q21.11-q21.33 70908992 89749856 40% CBWD3, FOXD4L3, PGM5, C9orf71, PIP5K1B, FAM122A, PRKACG, FXN, TJP2, C9orf61, APBA1, PTAR1, C9orf135, MAMDC2, SMC5, KLF9, TRPM3, hsa-mir-204, hsa-mir-7-1 V_0129_LC11470_Iafrate et al. (2004), V_4643_LC11388_Wong et al. (2007), V_4644_LC11438_Wong et al. V_0129, V_0305, V_1827, V_1828, V_2821, V_2822, V_2823, V_2824, V_2825, V_3771, V_3772, 518198 C9orf63, TMEM2, FAM108B1, C9orf85, C9orf57, GDA, ZFAND5, TMC1, ALDH1A1, ANXA1, RORB, TRPM6, C9orf40, C9orf41, C9orf95, OSTF1, PCSK5, RFK, (2007) V_3773, V_3774, V_3775, V_4643, V_4644, V_6689, V_6690, V_6691, V_6692, V_7749, V_7822, GCNT1, PRUNE2, FOXB2, VPS13A, GNA14, GNAQ, CEP78, PSAT1, CHCHD9, TLE4, TLE1, FAM75B, RASEF, FRMD3, C9orf103, UBQLN1, GKAP1, KIF27, V_7836, V_8032, V_8629, V_9135, V_9617, V_9618, V_10301, V_10302, V_10303, V_22576, V_22580 C9orf64, HNRNPK, RMI1, SLC28A3, NTRK2, AGTPBP1, MAK10, GOLM1, C9orf153, ISCA1, ZCCHC6, GAS1 V_22665, V_22674, V_22911, V_23024, V_23144, V_23902, V_23903, V_23905, V_23906, V_29395, V_29497 9 q21.33-q22.1 90317730 90475742 30% DAPK1, CTSL1 V_23910 12 11 23 4 Supplementary Table 4 Page 3
9 q22.32-q33.3 98173643 125805132 40% PTCH1, C9orf102, HSD17B3, SLC35D2, ZNF367, HABP4, CDC14B, C9orf21, ZNF510, HIATL2, FAM22G, CTSL2, ZNF322B, KIAA1529, TDRD7, TMOD1, hsa-mir-1302-8, hsa-mir-32, hsa-mir-455, hsa-mir-147 V_0131_LC11661_Iafrate et al. (2004), V_4646_LC11551_Wong et al. (2007), V_4647_LC11560_Wong et al. V_0131, V_0306, V_0650, V_0651, V_0652, V_1214, V_1476, V_1830, V_1831, V_2826, V_2827, 617225 C9orf97, NCBP1, XPA, FOXE1, C9orf156, HEMGN, ANP32B, NANS, TRIM14, CORO2A, TBC1D2, GABBR2, ANKS6, GALNT12, COL15A1, TGFBR1, ALG2, (2007), V_4648_LC11560_Wong et al. (2007), V_4649_LC11564_Wong et al. (2007), V_2828, V_2829, V_2830, V_2831, V_2832, V_2833, V_2834, V_2835, V_2836, V_3776, V_3777, SEC61B, KRT8P11, NR4A3, STX17, ERP44, INVS, TEX10, C9orf30, BAAT, MRPL50, ZNF189, ALDOB, C9orf125, RNF20, GRIN3A, PPP3R2, C9orf107, V_4650_LC11572_Wong et al. (2007), V_4651_LC11606_Wong et al. (2007), V_4652_LC11661_Wong et al. V_3778, V_3779, V_3780, V_4646, V_4647, V_4648, V_4649, V_4650, V_4651, V_4652, V_4653, CYLC2, SMC2, OR13F1, OR13C4, OR13C3, OR13C8, OR13C5, OR13C2, OR13C9, OR13D1, NIPSNAP3A, NIPSNAP3B, ABCA1, SLC44A1, FSD1L, FKTN, (2007), V_4653_LC11698_Wong et al. (2007) V_5263, V_5264, V_5413, V_5414, V_6700, V_6701, V_6702, V_6703, V_6704, V_6705, V_6706, TAL2, TMEM38B, ZNF462, RAD23B, KLF4, ACTL7B, ACTL7A, IKBKAP, C9orf6, CTNNAL1, C9orf5, C9orf4, EPB41L4B, PTPN3, AKAP2, C9orf152, TXN, V_6707, V_6708, V_6709, V_6710, V_6711, V_6712, V_6713, V_6714, V_7714, V_7715, V_7716, TXNDC8, SVEP1, MUSK, LPAR1, OR2K2, KIAA0368, ZNF483, PTGR1, C9orf29, DNAJC25, C9orf84, UGCG, SUSD1, ROD1, HSDL2, C9orf147, KIAA1958, V_7717, V_7718, V_7721, V_7722, V_7723, V_7724, V_7849, V_7866, V_7938, V_8630, V_8631, C9orf80, SNX30, SLC46A2, ZFP37, SLC31A2, FKBP15, SLC31A1, CDC26, PRPF4, WDR31, BSPRY, HDHD3, ALAD, POLE3, C9orf43, RGS3, ZNF618, AMBP, V_8632, V_9136, V_9620, V_9621, V_10305, V_10306, V_10307, V_10308, V_10309, V_22566, KIF12, COL27A1, ORM1, ORM2, AKNA, DFNB31, ATP6V1G1, C9orf91, TNFSF15, TNFSF8, TNC, Dec-01, PAPPA, ASTN2, TRIM32, TLR4, DBC1, V_22577, V_22820, V_22998, V_23884, V_23885, V_29393, V_29421, V_29449 CDK5RAP2, MEGF9, FBXW2, PSMD5, PHF19, TRAF1, C5, CEP110, RAB14, G 10 q21.1 55648108 56900775 10% PCDH15 hsa-mir-548f-1 V_2868, V_2869, V_2870, V_3802, V_3803, V_6874, V_7878, V_9154, V_9157, V_9642, V_10327, 18 5 27 0 V_10328, V_10329 10 q21.1 57154391 57982485 10% PCDH15 V_4694_LC12333_Wong et al. (2007), V_4695_LC12340_Wong et al. (2007) V_4694, V_4695, V_5599, V_8655, V_9158 18 5 27 0 11 p15.4 4870844 5686180 16% MMP26, OR51H1P, OR51T1, OR51A6P, OR51A7, OR51G2, OR51G1, OR51A4, OR51A2, OR51L1, OR52J3, OR52E2, OR52A4, OR52A5, OR52A1, OR51V1, V_0413, V_2900, V_2901, V_3835, V_5421, V_6917, V_6920, V_8176, V_9174, V_22813, V_23184 16 7 26 1 HBB, HBG1, HBG2, HBE1, OR51B4, OR51B5, OR51B2, OR51B6, OR51M1, OR51J1, OR51Q1, OR51I1, OR51I2, OR52D1, UBQLN3, UBQLNL, OR52H1, OR52B6, TRIM34, TRIM5 11 p15.4 10220418 10424068 22% SBF2, ADM V_0143_LC12968_Iafrate et al. (2004) V_0143 14 9 25 2 11 p15.1-p13 21159660 31811534 36% NELL1, ANO5, SLC17A6, FANCF, GAS2, SVIP, LUZP2, ANO3, ANO4, SLC5A12, FIBIN, BBOX1, CCDC34, LGR4, LIN7C, BDNF, KIF18A, METT5D1, KCNA4, hsa-mir-610 V_0145_LC13078_Iafrate et al. (2004), V_2166_LC13021_Locke et al. (2006), V_4733_LC13087_Wong et al. V_0145, V_1236, V_1237, V_1238, V_1239, V_1240, V_1241, V_1242, V_1243, V_1888, V_2166, 815216 FSHB, C11orf46, MPPED2, DCDC5, DCDC1, DNAJC24, IMMP1L, ELP4, PAX6 (2007) V_2909, V_2910, V_2911, V_2912, V_2913, V_2914, V_3839, V_3840, V_3841, V_3842, V_4733, V_5419, V_5420, V_5620, V_5621, V_6913, V_9178, V_9179, V_9180, V_9654, V_10346, V_10347, V_10348, V_10349, V_10350, V_10351, V_22623, V_22697, V_22711, V_23109, V_23137, V_23405, V_23406, V_23407, V_23408 11 p12 37366695 42534158 32% LRRC4C V_4738_LC13143_Wong et al. (2007), V_4739_LC13153_Wong et al. (2007) V_2920, V_2921, V_3846, V_3847, V_4738, V_4739, V_9182, V_9655, V_10354, V_10355, V_10356 9 14 23 4
11 p11.2-q11 46757426 56134529 30% F2, CKAP5, LRP4, C11orf49, ARFGAP2, PACSIN3, DDB2, ACP2, NR1H3, MADD, MYBPC3, SPI1, SLC39A13, PSMC3, RAPSN, CUGBP1, PTPMT1, KBTBD4, V_0147_LC13187_Iafrate et al. (2004), V_2167_LC13212_Locke et al. (2006), V_4741_LC13180_Wong et al. V_0147, V_0308, V_0417, V_0418, V_0419, V_1244, V_1245, V_1889, V_1890, V_2167, V_2922, 914243 NDUFS3, FAM180B, C1QTNF4, MTCH2, AGBL2, FNBP4, NUP160, PTPRJ, OR4B1, OR4X2, OR4X1, OR4S1, OR4C3, OR4C45, OR4C5, OR4C2P, OR4A4P, (2007), V_4742_LC13206_Wong et al. (2007), V_4743_LC13212_Wong et al. (2007), V_2923, V_2924, V_2925, V_2926, V_2927, V_3848, V_3849, V_3850, V_3851, V_3852, V_4741, UBTFL7, FOLH1, TYRL, OR4C13, OR4C12, OR4A5, OR4A47, OR4C46, TRIM48, OR4A16, OR4A15, OR4A13P, OR4C15, OR4C16, OR4C11, OR4P4, OR4S2, V_5013_LC13187_Wong et al. (2007) V_4742, V_4743, V_5013, V_5626, V_5627, V_5628, V_5629, V_6916, V_6918, V_6919, V_6922, OR4C6, OR4P1P, OR5D3P, OR5D13, OR5D14, OR5L1, OR5D18, OR5L2, OR5D16, SPRYD5, OR5W2, OR5I1, OR10AG1, OR7E5P, OR5F1, OR5AS1, V_6923, V_8067, V_8098, V_8223, V_8241, V_8686, V_8687, V_8688, V_8689, V_8690, V_9183, OR5AQ1P, OR8I2, OR8H2, OR8H3, OR8J3, OR8K5, OR5J2, OR5T2, OR5T3, OR5T1, OR8H1, OR8K3, OR8K1, OR8J1 V_9184, V_9185, V_9186, V_9187, V_9188, V_9189, V_9658, V_9659, V_9660, V_9661, V_9662, V_9663, V_10357, V_10358, V_10359, V_10360, V_10361, V_22552, V_23021, V_23107, V_23169, V_23410, V_23411, V_23412, V_23413, V_29474 11 q14.1-q23.2 82455278 113416497 34% PRCP, C11orf82, RAB30, PCF11, ANKRD42, CCDC90B, DLG2, TMEM126B, TMEM126A, CREBZF, CCDC89, SYTL2, CCDC83, PICALM, EED, C11orf73, hsa-mir-1261, hsa-mir-1304, hsa-mir-548l, hsa-mir-34b, hsa-mir-34c V_0152_LC13403_Iafrate et al. (2004), V_0154_LC13475_Iafrate et al. (2004), V_0155_LC13522_Iafrate et V_0152, V_0154, V_0155, V_0156, V_0309, V_0422, V_0423, V_0977, V_0978, V_2939, V_2940, 716243 CCDC81, ME3, PRSS23, FZD4, TMEM135, RAB38, CTSC, GRM5, TYR, NOX4, FOLH1B, TRIM77, UBTFL2, TRIM49, TRIM64, TRIM53, UBTFL1, NAALAD2, al. (2004), V_0156_LC13530_Iafrate et al. (2004), V_4758_LC13426_Wong et al. (2007), V_2941, V_2942, V_2943, V_2944, V_2945, V_2946, V_2947, V_2948, V_2949, V_2950, V_2951, CHORDC1, FAT3, MTNR1B, SLC36A4, CCDC67, C11orf75, KIAA1731, TAF1D, C11orf54, MED17, C11orf90, HEPHL1, PANX1, FOLR4, GPR83, MRE11A, V_4759_LC13448_Wong et al. (2007), V_4760_LC13485_Wong et al. (2007), V_4761_LC13567_Wong et al. V_2952, V_2953, V_2954, V_2955, V_2956, V_2957, V_3860, V_3861, V_3862, V_3863, V_3864, ANKRD49, FUT4, PIWIL4, AMOTL1, CWC15, KDM4D, SFRS2B, ENDOD1, SESN3, FAM76B, CEP57, MTMR2, MAML2, CCDC82, JRKL, CNTN5, TMEM133, (2007), V_4991_LC13460_Wong et al. (2007) V_3865, V_3866, V_4758, V_4759, V_4760, V_4761, V_4991, V_5277, V_5424, V_5638, V_5639, PGR, TRPC6, ANGPTL5, KIAA1377, C11orf70, YAP1, BIRC3, BIRC2, TMEM123, MMP7, MMP20, MMP27, MMP8, MMP10, MMP1, MMP3, MMP12, MMP13, V_5640, V_5641, V_5642, V_5643, V_5644, V_5645, V_5646, V_6895, V_6896, V_6897, V_6898, DCUN1D5, DYNC2H1, PDGFD, DDI1, CASP12, CASP4, CASP5, CASP1, CARD16, CARD18, GRIA4, KIAA1826, KBTBD3, AASDHPPT, GUCY1A2, CWF19L2, V_6899, V_6900, V_6901, V_6945, V_6947, V_6949, V_6950, V_6951, V_6952, V_6955, V_6957, ALKBH8, ELMOD1, SLN, SLC35F2, RAB39, CUL5, ACAT1, NPAT, ATM, C11orf65, KDELC2, EXPH5, DDX10, C11orf87, ZC3H12C, RDX, FDX1, ARHGAP20, V_7867, V_7901, V_7990, V_8170, V_8187, V_8211, V_8693, V_8694, V_8695, V_8696, V_8697, C11orf53, C11orf92, POU2AF1, BTG4, C11orf88, LAYN, SIK2, PPP2R1B, ALG9, C11orf1, CRYAB, HSPB2, C11orf52, DIXDC1, DLAT, PIH1D2, C11orf57, V_9193, V_9194, V_9195, V_9196, V_9197, V_9198, V_9199, V_9668, V_9669, V_9670, V_9671, TIMM8B, SDHD, IL18, TEX12, BCO2, PTS, C11orf34, NCAM1, TTC12, ANKK1, V_10373, V_10374, V_10375, V_10376, V_10377, V_10378, V_10379, V_22564, V_22569, V_22591, V_22607, V_22784, V_23117, V_23182, V_23395, V_23427, V_23428, V_23429, V_23430, V_29450
11 q24.2-q24.3 126255233 130118963 30% ST3GAL4, KIRREL3, PRR10, ETS1, FLI1, KCNJ1, KCNJ5, C11orf45, TP53AIP1, BARX2, TMEM45B, NFRKB, PRDM10, NCRNA00167, APLP2, ST14 V_2961, V_2962, V_3869, V_5651, V_5652, V_6906, V_9200, V_10381, V_10382, V_10383, V_22604, 11 12 24 3 V_23400, V_23401 11 q24.3-q25 130767849 134215679 30% SNX19, NTM, C11orf39, OPCML, SPATA19, IGSF9B, JAM3, NCAPD3, VPS26B, THYN1, ACAD8, GLB1L3, GLB1L2 V_4764_LC13705_Wong et al. (2007) V_2964, V_3870, V_4764, V_5278, V_5279, V_5280, V_6907, V_8263, V_8700, V_8701, V_8702, 11 12 24 3 V_8703, V_8704, V_9675, V_9676 12 q21.1-q21.2 75679804 77632128 12% CAPS2, GLIPR1L1, GLIPR1L2, GLIPR1, KRR1, PHLDA1, NAP1L1, BBS10, OSBPL8, CSRP2, E2F7 V_1262, V_1263, V_1264, V_1920, V_6992 17 6 27 0 12 q21.2 79050378 79547349 16% SYT1 V_29441 16 7 26 1 12 q22 93018323 93273956 10% C12orf74, PLEKHG7, EEA1 18 5 27 0 13 q12.11-q12.12 20904235 23222382 10% CRYL1, IFT88, IL17D, N6AMT2, XPO4, LATS2, SAP18, C13orf3, MRP63, ZDHHC20, EFHA1, FGF9 V_4797_LC14674_Wong et al. (2007), V_4899_LC14682_Wong et al. (2007) V_4797, V_4899, V_5314, V_5316, V_5317, V_8180, V_8745, V_8746, V_9216, V_9707, V_10412 18 5 27 0
13 q12.12 23256529 23615069 12% V_4899_LC14682_Wong et al. (2007) V_4899, V_5315, V_5317, V_9216 17 6 27 0 13 q12.12-q33.3 23906122 108320046 28% SACS, TNFRSF19, MIPEP, SPATA13, PARP4, ATP12A, RNF17, CENPJ, TPTE2P1, PABPC3, FAM123A, MTMR6, NUPL1, ATP8A2, SHISA2, RNF6, CDK8, hsa-mir-320d-1, hsa-mir-621, hsa-mir-16-1, hsa-mir-15a, hsa-mir-622, hsa-mir-17, hsa-mir-18a, hsa- V_0168_LC14853_Iafrate et al. (2004), V_0169_LC14892_Iafrate et al. (2004), V_0170_LC14945_Iafrate et V_0168, V_0169, V_0170, V_0171, V_0172, V_0312, V_0313, V_0314, V_0315, V_0361, V_0974, 914252 WASF3, GPR12, USP12, RPL21, RASL11A, GTF3A, MTIF3, LNX2, POLR1D, GSX1, PDX1, ATP5EP2, CDX2, PRHOXNB, FLT3, PAN3, FLT1, POMP, mir-19a, hsa-mir-20a, hsa-mir-19b-1, hsa-mir-92a-1, hsa-mir-623, hsa-mir-1267 al. (2004), V_0171_LC15037_Iafrate et al. (2004), V_0172_LC15055_Iafrate et al. (2004), V_1275, V_1276, V_1277, V_1278, V_1279, V_1280, V_1511, V_1512, V_1513, V_1514, V_1515, SLC46A3, KIAA0774, SLC7A1, UBL3, KATNAL1, HMGB1, USPL1, ALOX5AP, C13orf33, C13orf26, HSPH1, B3GALTL, RXFP2, FRY, BRCA2, N4BP2L1, V_2173_LC14935_Locke et al. (2006), V_4480_LC14964_Wong et al. (2007), V_4798_LC14797_Wong et al. V_1516, V_1943, V_1944, V_1945, V_1946, V_1947, V_1948, V_1949, V_2173, V_3006, V_3007, N4BP2L2, PDS5B, KL, STARD13, RFC3, NBEA, MAB21L1, DCLK1, C13orf38, SPG20, CCNA1, C13orf36, RFXAP, SMAD9, ALG5, EXOSC8, FAM48A, (2007), V_4799_LC14805_Wong et al. (2007), V_4800_LC14821_Wong et al. (2007), V_3008, V_3009, V_3010, V_3011, V_3012, V_3013, V_3014, V_3015, V_3016, V_3017, V_3018, CSNK1A1L, POSTN, TRPC4, UFM1, FREM2, STOML3, C13orf23, NHLRC3, LHFP, COG6, FOXO1, MRPS31, SLC25A15, SUGT1L1, ELF1, WBP4, KBTBD6, V_4801_LC14824_Wong et al. (2007), V_4802_LC14832_Wong et al. (2007), V_4803_LC14849_Wong et al. V_3019, V_3020, V_3021, V_3022, V_3023, V_3024, V_3025, V_3026, V_3027, V_3028, V_3029, KBTBD7, MTRF1, NARG1L, C13orf15, KIAA0564, DGKH, AKAP11, TNFSF11, C13orf30, EPSTI1, DNAJC15, ENOX1, CCDC122, C13orf31, SERP2, TSC22D1, (2007), V_4804_LC14867_Wong et al. (2007), V_4805_LC14892_Wong et al. (2007), V_3030, V_3031, V_3032, V_3033, V_3034, V_3906, V_3907, V_3908, V_3909, V_3910, V_3911, NUFIP1, KIAA1704, GTF2F2, KCTD4, TPT1, SLC25A30, COG3, SPERT, SIAH3, ZC3H13, CPB2, LCP1, LRRC63, C13orf18, LRCH1, ESD, HTR2A, SUCLA2, V_4806_LC14911_Wong et al. (2007), V_4807_LC14925_Wong et al. (2007), V_4808_LC14946_Wong et al. V_3912, V_3913, V_3914, V_3915, V_3916, V_3917, V_3918, V_3919, V_3920, V_3921, V_3922, NUDT15, MED4, ITM2B, RB1, P2RY5, RCBTB2, CYSLTR2, FNDC3A, MLNR, CDADC1, CAB39L, SETDB2, PHF11, RCBTB1, ARL11, EBPL, KPNA3, C13orf1, (2007), V_4809_LC14956_Wong et al. (2007), V_4810_LC14976_Wong et al. (2007), V_3923, V_4480, V_4798, V_4799, V_4800, V_4801, V_4802, V_4803, V_4804, V_4805, V_4806, TRIM13, KCNRG, DLEU1, RNASEH2B, GUCY1B2, FAM124A, INTS6, WDFY2, D V_4811_LC14979_Wong et al. (2007), V_4812_LC15022_Wong et al. (2007), V_4813_LC15063_Wong et al. V_4807, V_4808, V_4809, V_4810, V_4811, V_4812, V_4813, V_4814, V_4815, V_4816, V_4817, (2007), V_4814_LC15122_Wong et al. (2007), V_4815_LC15123_Wong et al. (2007), V_4818, V_5426, V_5427, V_5428, V_5429, V_5702, V_5703, V_5704, V_5705, V_5706, V_5707, V_4816_LC15155_Wong et al. (2007), V_4817_LC15210_Wong et al. (2007), V_4818_LC15212_Wong et al. V_5708, V_5709, V_5710, V_5711, V_5712, V_5713, V_5714, V_5715, V_5716, V_5717, V_5718, (2007), V_0361_LC15215_Shaw-Smith et al. (2004) V_5719, V_5720, V_5721, V_5722, V_5723, V_5724, V_7004, V_7005, V_7006, V_7007, V_7008, 13 q33.3-q34 108663396 113061322 20% LIG4, ABHD13, TNFSF13B, MYO16, IRS2, COL4A1, COL4A2, RAB20, CARKD, CARS2, ING1, C13orf29, ANKRD10, ARHGEF7, C13orf16, SOX1, C13orf28 V_4819_LC15248_Wong et al. (2007), V_0361_LC15215_Shaw-Smith et al. (2004) V_0361, V_3035, V_3924, V_3925, V_3926, V_3927, V_4819, V_5725, V_6998, V_6999, V_8270, 14 9 26 1 V_8760, V_8761, V_9233, V_9723, V_23301 15 q21.1 47348697 48051767 18% SEMA6D 15 8 26 1 15 q21.3 54718595 55808982 16% UNC13C, RSL24D1, RAB27A, PIGB, CCPG1, DYX1C1 hsa-mir-628 V_4902_LC16284_Wong et al. (2007) V_4902, V_5782, V_5783, V_5784, V_8035, V_8799 16 7 26 1 15 q21.3 56578469 58153814 16% TEX9, MNS1, ZNF280D, TCF12, CGNL1, GRINL1A V_4903_LC16295_Wong et al. (2007) V_4903, V_5785, V_5786 16 7 26 1 15 q26.1-q26.2 94282889 95381138 16% MCTP2 V_4911_LC16537_Wong et al. (2007) V_3979, V_4911 16 7 26 1 16 q11.1-q12.1 35125885 47456602 12% SHCBP1, VPS35, ORC6L, MYLK3, C16orf87, GPT2, DNAJA2, NETO2, ITFG1 V_3119, V_4004, V_4005, V_5822, V_5823, V_5824, V_5825, V_5826, V_7111, V_8827, V_22780, 17 6 27 0 V_22973, V_29448, V_29465, V_29466, V_29467 16 q12.1 49437641 50480581 24% ZNF423, TMEM188, HEATR3, PAPD5, ADCY7, BRD7 13 10 25 2 16 q21 58201220 59429102 28% CSNK2A2, CCDC113, GINS3, NDRG4, SETD6, CNOT1, SLC38A7, GOT2 V_4959_LC16914_Wong et al. (2007) V_4959, V_5437, V_5830 12 11 24 3 17 p11.2 16266210 18169260 18% UBB, TRPV2, C17orf45, C17orf76, ZNF287, ZNF624, CCDC144A, KRT17P1, TNFRSF13B, MPRIP, C17orf84, PLD6, FLCN, COPS3, NT5M, MED9, RASD1, hsa-mir-33b V_4990_LC17383_Wong et al. (2007) V_0495, V_3139, V_4023, V_4990, V_7143, V_10512 15 8 26 1 PEMT, RAI1, SMCR5, SREBF1, TOM1L2, LRRC48, ATPAF2, C17orf39, DRG2, MYO15A, ALKBH5, LLGL1, FLII, SMCR7 23 p22.33-p11.4 3934357 38816360 34% NLGN4X, VCX3A, HDHD1A, STS, VCX, PNPLA4, VCX2, VCX3B, KAL1, FAM9A, FAM9B, TBL1X, GPR143, SHROOM2, WWC3, CLCN4, MID1, HCCS, hsa-mir-651, hsa-mir-548f-5 V_0241_LC20771_Iafrate et al. (2004), V_0242_LC20786_Iafrate et al. (2004), V_0362_LC20686_Shaw- V_0241, V_0242, V_0362, V_0655, V_0656, V_0657, V_1313, V_1533, V_1837, V_1838, V_1839, 815243 ARHGAP6, AMELX, MSL3, FRMPD4, PRPS2, TLR7, TLR8, TMSB4X, FAM9C, ATXN3L, EGFL6, TCEANC, RAB9A, TRAPPC2, OFD1, GPM6B, GEMIN8, Smith et al. (2004), V_2275_LC20696_Locke et al. (2006) V_1840, V_1841, V_1842, V_1843, V_1844, V_1845, V_2275, V_3247, V_3248, V_3249, V_3261, GLRA2, FANCB, MOSPD2, ASB9, ASB11, PIGA, FIGF, PIR, BMX, ACE2, TMEM27, CA5BP, CA5B, ZRSR2, AP1S2, GRPR, MAGEB17, CTPS2, S100G, V_3262, V_3263, V_3264, V_3265, V_4143, V_4144, V_4145, V_4146, V_4147, V_4148, V_5359, SYAP1, CXorf15, RBBP7, REPS2, NHS, SCML1, RAI2, BEND2, SCML2, CDKL5, RS1, PPEF1, PHKA2, GPR64, PDHA1, MAP3K15, SH3KBP1, CXorf23, V_5360, V_5361, V_6730, V_6731, V_6732, V_6733, V_6734, V_6735, V_6736, V_6737, V_6738, MAP7D2, EIF1AX, RPS6KA3, CNKSR2, KLHL34, SMPX, MBTPS2, YY2, SMS, PHEX, ZNF645, DDX53, PTCHD1, PRDX4, ACOT9, SAT1, APOO, CXorf58, V_7772, V_7773, V_7774, V_7775, V_7779, V_7782, V_7783, V_7786, V_7790, V_7794, V_7796, KLHL15, EIF2S3, ZFX, PDK3, PCYT1B, POLA1, ARX, MAGEB18, MAGEB6, MAGEB5, MAGEB10, WDR42B, IL1RAPL1, MAGEB2, MAGEB3, MAGEB4, V_7798, V_8295, V_8296, V_8297, V_8298, V_8299, V_8300, V_8301, V_8302, V_8303, V_8907, MAGEB1, NR0B1, CXorf21, GK, MAP3K7IP3, CXorf29, FTHL17, DMD, FAM47A, TMEM47, FAM47B, MAGEB16, CXorf22, CXorf59, CXorf30, FAM47C, V_8908, V_8909, V_8910, V_8911, V_9335, V_9336, V_9337, V_9338, V_9339, V_9340, V_9855, PRRG1, LANCL3, XK, CYBB, DYNLT3, CXorf27, SYTL5, SRPX, RPGR, OTC, TSPAN7, MID1IP1 V_9856, V_9857, V_9858, V_9859, V_9860, V_22612, V_22764, V_23039, V_23171, V_23911, V_23917, V_23918, V_23920 23 p11.3 42490765 43845330 24% MAOA, MAOB, NDP V_7787 13 10 25 2 23 p11.3-p11.23 45994706 47566051 18% ZNF673, ZNF674, CHST7, SLC9A7, RP2, CXorf31, PHF16, RGN, NDUFB11, RBM10, UBA1, INE1, PCTK1, USP11, ZNF157, ZNF41, CXorf24, ARAF, SYN1, V_0658, V_1846, V_9342, V_29456, V_29457 15 8 26 1 TIMP1, CFP, ELK1, UXT 23 p11.23-p11.22 48797396 50769194 24% OTUD5, KCND1, GRIPAP1, TFE3, CCDC120, WDR45, GPKOW, MAGIX, PLP2, PRICKLE3, SYP, CACNA1F, CCDC22, FOXP3, PPP1R3F, GAGE10, hsa-mir-532, hsa-mir-188, hsa-mir-500, hsa-mir-362, hsa-mir-501, hsa-mir-660, hsa-mir-502 V_0824_LC20844_Sharp et al. (2005), V_2278_LC20844_Locke et al. (2006) V_0659, V_0660, V_0824, V_2278, V_7789, V_7791, V_29425, V_29434 13 10 24 3 GAGE12C, GAGE12J, GAGE2D, GAGE13, GAGE2C, GAGE2B, GAGE12B, GAGE12F, GAGE12D, GAGE12E, GAGE12G, GAGE12H, GAGE1, GAGE2A, PAGE1, PAGE4, CLCN5, AKAP4, CCNB3, SHROOM4, BMP15 23 p11.22 50892588 52803197 30% NUDT10, CXorf67, NUDT11, GSPT2, MAGED1, MAGED4B, MAGED4, XAGE2, XAGE1B, XAGE2B, XAGE1C, XAGE1D, XAGE1E, SSX8, SSX7, SSX2B 12 11 23 4 23 p11.21-q12 55061076 67314957 32% PAGE2B, PAGE2, FAM104B, PAGE5, PAGE3, MAGEH1, RRAGB, KLF8, UBQLN2, SPIN3, SPIN2B, SPIN2A, FAAH2, ZXDB, ZXDA, SPIN4, ARHGEF9, hsa-mir-1468, hsa-mir-223 V_0243_LC20866_Iafrate et al. (2004), V_0363_LC20881_Shaw-Smith et al. (2004), V_2279_LC20881_Locke V_0243, V_0363, V_0661, V_1848, V_1849, V_1850, V_1851, V_1852, V_2279, V_3251, V_3266, 10 13 23 4 FAM123B, ASB12, MTMR8, ZC4H2, ZC3H12B, LAS1L, MSN, VSIG4, HEPH, EDA2R, AR, OPHN1 et al. (2006) V_4150, V_4151, V_4152, V_4153, V_4154, V_7792, V_7793, V_7795, V_9344, V_9345, V_9346, V_9347, V_22769, V_22834, V_22863, V_22884, V_23256, V_23921, V_23922, V_23923, V_23924
23 q13.1 68718238 70516832 32% FAM155B, EDA, OTUD6A, IGBP1, DGAT2L6, AWAT1, P2RY4, ARR3, RAB41, PDZD11, KIF4A, GDPD2, DLG3, TEX11, SLC7A3, SNX12, FOXO4, CXorf65, V_6739, V_7797 11 12 23 4 IL2RG, MED12, NLGN3, GJB1, ZMYM3, NONO 23 q13.1-q21.33 71588839 93839231 42% HDAC8, PHKA1, DMRTC1, DMRTC1B, CXorf50, PABPC1L2B, PABPC1L2A, NAP1L6, NAP1L2, CDX4, CHIC1, FXYD8, BMP2KL, ZCCHC13, SLC16A2, RLIM, hsa-mir-421, hsa-mir-374b, hsa-mir-545, hsa-mir-374a, hsa-mir-325, hsa-mir-548i-4, hsa-mir-361 V_0244_LC20915_Iafrate et al. (2004), V_0245_LC20923_Iafrate et al. (2004), V_0246_LC20931_Iafrate et V_0244, V_0245, V_0246, V_0247, V_0248, V_0249, V_1853, V_1854, V_1855, V_1856, V_1857, 617207 KIAA2022, ABCB7, UPRT, ZDHHC15, MAGEE2, CXorf26, MAGEE1, FGF16, ATRX, MAGT1, COX7B, ATP7A, PGAM4, PGK1, TAF9B, CYSLTR1, ZCCHC5, al. (2004), V_0247_LC20945_Iafrate et al. (2004), V_0248_LC20946_Iafrate et al. (2004), V_1858, V_1859, V_1860, V_3252, V_3253, V_3267, V_3268, V_4156, V_4157, V_4158, V_6740, LPAR4, P2RY10, GPR174, ITM2A, TBX22, FAM46D, BRWD3, NSBP1, SH3BGRL, POU3F4, CYLC1, RPS6KA6, HDX, APOOL, SATL1, ZNF711, POF1B, CHM, V_0249_LC20974_Iafrate et al. (2004) V_6741, V_6742, V_7799, V_8307, V_8308, V_9348, V_9349, V_22536, V_22640, V_22660, V_23156, DACH2, KLHL4, CPXCR1, TGIF2LX, PABPC5, PCDH11X, NAP1L3, FAM133A V_23925, V_23926, V_23927, V_23928 23 q21.33 94007974 94702386 40% hsa-mir-548m 914216 23 q23 111228535 112779416 44% TRPC5, ZCCHC16, LHFPL1, AMOT 815207 23 q23-q28 114659352 148832702 46% PLS3, AGTR2, SLC6A14, CXorf61, KLHL13, WDR44, DOCK11, IL13RA1, ZCCHC12, LONRF3, KIAA1210, PGRMC1, SLC25A43, SLC25A5, CXorf56, UBE2A, hsa-mir-1277, hsa-mir-766, hsa-mir-220a, hsa-mir-363, hsa-mir-92a-2, hsa-mir-19b-2, hsa-mir-20b, V_0252_LC21078_Iafrate et al. (2004), V_0253_LC21091_Iafrate et al. (2004), V_0254_LC21120_Iafrate et V_0252, V_0253, V_0254, V_0255, V_0666, V_0667, V_0668, V_0669, V_0670, V_0671, V_0826, 716207 NKRF, Sep-06, ANKRD58, RPL39, UPF3B, RNF113A, NDUFA1, AKAP14, NKAP, RHOXF2B, RHOXF1, RHOXF2, ZBTB33, FAM70A, ATP1B4, LAMP2, CUL4B, hsa-mir-106a, hsa-mir-450b, hsa-mir-450a-1, hsa-mir-450a-2, hsa-mir-542, hsa-mir-503, hsa-mir-424, al. (2004), V_0255_LC21142_Iafrate et al. (2004), V_0826_LC21120_Sharp et al. (2005), V_0827, V_1865, V_1866, V_1867, V_1868, V_1869, V_2130, V_2280, V_2281, V_2282, V_3255, MCTS1, C1GALT1C1, CT47B1, CT47A1, GLUD2, MRRFP, GRIA3, THOC2, XIAP, STAG2, SH2D1A, ODZ1, WDR40C, WDR40B, CXorf64, ACTRT1, hsa-mir-934, hsa-mir-504, hsa-mir-505, hsa-mir-320d-2, hsa-mir-890, hsa-mir-888, hsa-mir-892a, hsa- V_0827_LC21138_Sharp et al. (2005), V_2130_LC21120_Locke et al. (2006), V_2280_LC21120_Locke et al. V_3256, V_3257, V_3258, V_3269, V_3270, V_3271, V_3272, V_4166, V_4167, V_4168, V_4169, SMARCA1, OCRL, APLN, XPNPEP2, SASH3, ZDHHC9, UTP14A, BCORL1, ELF4, AIFM1, RAB33A, ZNF280C, SLC25A14, GPR119, RBMX2, FAM45B, mir-892b, hsa-mir-891b, hsa-mir-891a, hsa-mir-513c, hsa-mir-513b, hsa-mir-513a-1, hsa-mir-513a-2, (2006), V_2281_LC21120_Locke et al. (2006), V_2282_LC21138_Locke et al. (2006) V_4170, V_4171, V_4172, V_4173, V_4174, V_4175, V_4176, V_4177, V_5362, V_6745, V_6746, ENOX2, IGSF1, OR13H1, FRMD7, RAP2C, MBNL3, HS6ST2, USP26, TFDP3, GPC4, GPC3, PHF6, HPRT1, PLAC1, FAM122B, FAM122C, MOSPD1, hsa-mir-506, hsa-mir-507, hsa-mir-508, hsa-mir-509-2, hsa-mir-509-3, hsa-mir-509-2, hsa-mir-510, hsa V_6747, V_6748, V_6749, V_6750, V_6751, V_7758, V_7759, V_7760, V_7761, V_7762, V_7763, FAM127C, FAM127A, FAM127B, CXorf48, ZNF75D, ZNF449, DDX26B, CT45A3, CT45A5, SAGE1, MMGT1, SLC9A6, FHL1, MAP7D3, GPR112, BRS3, mir-514-1, hsa-mir-514-2, hsa-mir-514-2 V_7764, V_7765, V_7766, V_7767, V_7768, V_7769, V_8311, V_8312, V_8313, V_8913, V_8914, HTATSF1, VGLL1, CD40LG, ARHGEF6, RBMX, GPR101, ZIC3, FGF13, CXorf19, F9, MCF2, ATP11C, CXorf66, SOX3, CDR1, SPANXB2, SPANXB1, LDOC1, V_9353, V_9354, V_9355, V_9356, V_9862, V_9863, V_23076, V_23330, V_23912, V_23913, V_23914 SPANXC, SPANXA2, SPANXA1, SPANXD, MAGEC3, MAGEC1, MAGEC2, SPANXN4, SPANXN3, SLITRK4, SPANXN2, UBE2NL, SPANXN1, SLITRK2, V_23915, V_23916, V_29477 CXorf1, FMR1, FMR1NB, AFF2, IDS, MAGEA9B, HSFX1, TMEM185A, MAGEA11 23 q28 149774621 150351730 22% MTM1, MTMR1, CD99L2, HMGB3, GPR50 14 9 25 2 23 q28 154036237 155186928 22% MPP1, F8, H2AFB1, F8A1, FUNDC2, MTCP1NB, BRCC3, VBP1, RAB39B, CLIC2, H2AFB2, F8A2, F8A3, H2AFB3, TMLHE, SPRY3, VAMP7 hsa-mir-1184, hsa-mir-1184, hsa-mir-1184 V_0825_LC21225_Sharp et al. (2005), V_0828_LC21214_Sharp et al. (2005) V_0825, V_0828, V_1870, V_7771, V_9357, V_22709, V_23331 14 9 25 2
Amplifications
Chromosome Cytoband Start (bp) End (bp) Maximum Frequency Genes miRNAs aCGH copy number polymorphisms All copy number polymorphisms cluster 1 no cluster 1 amps cluster 2 no cluster 2 amps amp amp 1 p36.32-p36.31 4018081 6296166 8% AJAP1, NPHP4, KCNAB2, CHD5, RPL22, RNF207, ICMT V_4198_LC0097_Wong et al. (2007), V_4199_LC0100_Wong et al. (2007), V_4200_LC0104_Wong et al. V_3279, V_4198, V_4199, V_4200, V_6826, V_9869 19 4 27 0 (2007) 8 q22.1 95875697 97853395 8% INTS8, CCNE2, C8orf38, TP53INP1, PLEKHF2, C8orf37, GDF6, UQCRB, MTERFD1, PTDSS1, SDC2 V_2764, V_6646, V_6647, V_7713, V_9097, V_10264, V_22610, V_23881 19 4 27 0 8 q24.11-q24.12 118780579 119891030 8% EXT1, SAMD12 V_0300, V_8614 19 4 27 0 8 q24.21 130846242 131110876 8% FAM49B, ASAP1 V_0645, V_6667 19 4 27 0 8 q24.3 142316209 144008274 8% GPR20, PTP4A3, TSNARE1, BAI1, ARC, JRK, PSCA, LY6K, C8orf55, SLURP1, LYPD2, LYNX1, LY6D, GML, CYP11B1, CYP11B2 V_4791_LC10979_Wong et al. (2007) V_2778, V_4791, V_7671, V_10273, V_10274, V_10275, V_10276, V_22916, V_23863, V_23864 19 4 27 0 17 q12 32357988 33107157 8% ACCN1, CCL2, CCL7, CCL11, CCL8, CCL13, CCL1, C17orf102, TMEM132E V_5001_LC17457_Wong et al. (2007) V_4033, V_5001, V_7156, V_8260, V_23027 19 4 27 0 17 q12 35260292 35599659 8% LHX1, AATF, ACACA 19 4 27 0 17 q12 36901114 37700746 10% PCGF2, PSMB3, PIP4K2B, CCDC49, C17orf98, RPL23, LASP1, FBXO47, PLXDC1, CACNB1, RPL19, STAC2, FBXL20, MED1, CRKRS V_0205_LC17492_Iafrate et al. (2004) V_0205, V_3145, V_4036, V_8112, V_8845 18 5 27 0 17 q12-q21.2 38018436 38405062 14% IKZF3, ZPBP2, GSDMB, ORMDL3, GSDMA, PSMD3, CSF3, MED24, THRA, NR1D1, MSL1, CASC3, RAPGEFL1, WIPF2 V_0206_LC17502_Iafrate et al. (2004) V_0206 17 6 26 1 17 q21.2-q21.31 39294680 44735876 18% KRTAP4-6, KRTAP4-5, KRTAP4-4, KRTAP4-3, KRTAP4-2, KRTAP9-2, KRTAP9-3, KRTAP9-8, KRTAP9-6, KRTAP9-7, KRTAP16-1, KRTAP17-1, KRT33A, V_0207_LC17522_Iafrate et al. (2004), V_0208_LC17538_Iafrate et al. (2004), V_0801_LC17522_Sharp et al. V_0207, V_0208, V_0327, V_0328, V_0366, V_0367, V_0500, V_0501, V_0502, V_0801, V_0802, 13 10 24 3 KRT33B, KRT34, KRT31, KRT37, KRT38, KRT32, KRT35, KRT36, KRT13, KRT15, KRT19, KRT9, KRT14, KRT16, KRT17, EIF1, GAST, HAP1, JUP, FKBP10, (2005), V_0802_LC17522_Sharp et al. (2005), V_0803_LC17522_Sharp et al. (2005), V_0803, V_0804, V_2225, V_2226, V_2227, V_2228, V_2229, V_3146, V_3147, V_3148, V_4037, NT5C3L, KLHL10, KLHL11, ACLY, TTC25, CNP, NKIRAS2, ZNF385C, DHX58, KAT2A, HSPB9, RAB5C, KCNH4, HCRT, GHDC, STAT5B, STAT5A, STAT3, V_0804_LC17530_Sharp et al. (2005), V_2225_LC17522_Locke et al. (2006), V_2226_LC17522_Locke et al. V_4038, V_4039, V_4040, V_5008, V_5009, V_5010, V_5011, V_5012, V_5014, V_5015, V_5862, PTRF, ATP6V0A1, NAGLU, HSD17BP1, HSD17B1, COASY, MLX, PSMC3IP, FAM134C, TUBG1, TUBG2, PLEKHH3, CCR10, CNTNAP1, EZH1, RAMP2, (2006), V_2227_LC17522_Locke et al. (2006), V_2228_LC17522_Locke et al. (2006), V_5863, V_5864, V_5865, V_5866, V_7161, V_7162, V_7163, V_8181, V_8243, V_8846, V_8847, VPS25, WNK4, CCDC56, CNTD1, BECN1, PSME3, AOC2, AOC3, G6PC, AARSD1, RUNDC1, RPL27, IFI35, VAT1, RND2, BRCA1, NBR2, TMEM106A, V_2229_LC17530_Locke et al. (2006), V_5008_LC17512_Wong et al. (2007), V_5009_LC17516_Wong et al. V_8848, V_8849, V_8850, V_8851, V_9287, V_9288, V_9289, V_9290, V_9775, V_9776, V_23317 ARL4D, DHX8, ETV4, MEOX1, SOST, DUSP3, MPP3, CD300LG, MPP2, C17orf88, PPY, PYY, NAGS, TMEM101, LSM12, G6PC3, HDAC5, C17orf53, ASB16, (2007), V_5010_LC17522_Wong et al. (2007), V_5011_LC17522_Wong et al. (2007), C17orf65, TMUB2, ATXN7L3, UBTF, SLC4A1, RUNDC3A, SLC25A39, GRN, FAM171A2, ITGA2B, GPATCH8, FZD2, CCDC43, DBF4B, ADAM11, GJC1, V_5012_LC17522_Wong et al. (2007), V_5014_LC17522_Wong et al. (2007), V_5015_LC17522_Wong et al. HIGD1B, EFTUD2, CCDC103, FAM187A, GFAP, KIF18B, C1QL1, DCAKD, NMT1, PLCD3, ACBD4, HEXIM1, HEXIM2, FMNL1, C17orf46, MAP3K14, SH3D20, (2007) PLEKHM1, C17orf69, CRHR1, MAPT, KIAA1267, LRRC37A, LRRC37A2, ARL17 17 q21.31-q21.32 44803614 45682164 10% NSF, WNT3, WNT9B, GOSR2, RPRML, LRRC37A4, CDC27, MYL4, ITGB3, C17orf57, NPEPPS V_5016_LC17543_Wong et al. (2007) V_5016, V_5867, V_23523 16 7 27 0 17 q21.33 48595241 49151875 10% MYCBPAP, EPN3, SPATA20, CACNA1G, ABCC3, ANKRD40, WFIKKN2, TOB1, SPAG9 V_4041, V_5334 18 5 27 0 17 q23.3 62220597 62410760 8% TEX2 V_2232_LC17640_Locke et al. (2006), V_5027_LC17640_Wong et al. (2007) V_2232, V_5027 19 4 27 0 17 q25.1 73114725 73591127 10% ARMC7, NT5C, HN1, SUMO2, NUP85, GGA3, MRPS7, MIF4GD, SLC25A19, GRB2, KIAA0195, CASKIN2, TSEN54, LLGL2 18 5 27 0 17 q25.1-q25.3 73896166 78514940 18% MRPL38, FBF1, ACOX1, CDK3, EVPL, SRP68, GALR2, ZACN, EXOC7, FOXJ1, RNF157, FAM100B, QRICH2, PRPSAP1, SPHK1, UBE2O, AANAT, RHBDF2, hsa-mir-636 V_0212_LC17741_Iafrate et al. (2004), V_0213_LC17753_Iafrate et al. (2004), V_0807_LC17750_Sharp et al. V_0212, V_0213, V_0504, V_0505, V_0807, V_2233, V_2234, V_2235, V_3153, V_3154, V_4048, 12 11 26 1 CYGB, PRCD, SNORD1C, ST6GALNAC2, ST6GALNAC1, MXRA7, JMJD6, C17orf95, SFRS2, MFSD11, MGAT5B, SEC14L1, TNRC6C, TMC6, TMC8, (2005), V_2233_LC17750_Locke et al. (2006), V_2234_LC17753_Locke et al. (2006), V_4327, V_5033, V_5034, V_5035, V_5036, V_5039, V_5040, V_5041, V_5042, V_5043, V_5883, C17orf99, SYNGR2, TK1, AFMID, BIRC5, SOCS3, PGS1, DNAH17, CYTH1, USP36, TIMP2, LGALS3BP, CANT1, C1QTNF1, ENGASE, ENPP7, CBX2, CBX8, V_2235_LC17756_Locke et al. (2006), V_4327_LC17763_Wong et al. (2007), V_5033_LC17737_Wong et al. V_7172, V_7173, V_7174, V_7175, V_7176, V_8266, V_8853, V_9777, V_10521, V_23319, V_23532, CBX4, TBC1D16, CCDC40, GAA, EIF4A3, CARD14, SGSH, SLC26A11, KIAA1618, RNF213, NPTX1 (2007), V_5034_LC17743_Wong et al. (2007), V_5035_LC17750_Wong et al. (2007), V_23533, V_23534, V_23535, V_23536, V_23537 V_5036_LC17763_Wong et al. (2007), V_5039_LC17763_Wong et al. (2007), V_5040_LC17763_Wong et al. (2007), V_5041_LC17763_Wong et al. (2007), V_5042_LC17763_Wong et al. (2007), V_5043_LC17763_Wong et al. (2007) 17 q25.3 78559488 79318162 10% CHMP6, BAIAP2, AATK, AZI1, C17orf56, C17orf89, SLC38A10, C17orf55, TMEM105 hsa-mir-657, hsa-mir-338, hsa-mir-1250 V_8266, V_10522 18 5 27 0 19 q13.12-q13.2 36851400 39019371 8% ZFP14, ZFP82, ZNF566, ZNF529, ZNF382, ZNF461, ZNF567, ZNF790, ZNF345, ZNF568, ZNF420, ZNF585A, ZNF585B, ZNF383, ZNF527, ZNF569, ZNF570, V_3188, V_4076, V_5949, V_7200, V_8871 19 4 27 0 ZNF793, ZNF540, ZNF571, ZFP30, ZNF781, ZNF607, ZNF573, WDR87, SIPA1L3, DPF1, PPP1R14A, SPINT2, C19orf33, YIF1B, KCNK6, C19orf15, PSMD8, GGN, SPRED3, FAM98C, RASGRP4, RYR1 19 q13.2 39827841 40959865 14% SAMD4B, PAF1, MED29, ZFP36, PLEKHG2, RPS16, SUPT5H, TIMM50, DLL3, EID2B, EID2, LGALS13, LGALS14, CLC, LEUTX, DYRK1B, FBL, FCGBP, hsa-mir-641 V_0511, V_3189, V_4077, V_4078, V_5951, V_7201, V_10550, V_10551, V_10552 17 6 26 1 PSMC4, ZNF546, ZNF780B, ZNF780A, MAP3K10, TTC9B, CNTD2, AKT2, C19orf47, PLD3, HIPK4, PRX, SERTAD1, SERTAD3, BLVRB 19 q13.31-q13.41 45106386 52162494 18% PVR, CEACAM19, CEACAM16, BCL3, CBLC, BCAM, PVRL2, TOMM40, APOE, APOC1, APOC4, APOC2, CLPTM1, RELB, SFRS16, ZNF296, GEMIN7, hsa-mir-330, hsa-mir-642, hsa-mir-769, hsa-mir-220c, hsa-mir-150 V_0221_LC19039_Iafrate et al. (2004), V_2243_LC19026_Locke et al. (2006), V_2244_LC19026_Locke et al. V_0221, V_1299, V_1300, V_1301, V_1521, V_1990, V_2243, V_2244, V_2245, V_3191, V_3192, 12 11 26 1 LRRC68, NKPD1, TRAPPC6A, BLOC1S3, EXOC3L2, MARK4, CKM, KLC3, ERCC2, PPP1R13L, CD3EAP, ERCC1, FOSB, RTN2, VASP, OPA3, GPR4, EML2, (2006), V_2245_LC19036_Locke et al. (2006), V_5100_LC19016_Wong et al. (2007), V_3193, V_4079, V_4080, V_4081, V_4082, V_5100, V_5101, V_5102, V_5103, V_5104, V_5343, GIPR, SNRPD2, QPCTL, FBXO46, SIX5, DMPK, DMWD, RSHL1, SYMPK, FOXA3, IRF2BP1, MYPOP, NANOS2, NOVA2, CCDC61, PGLYRP1, IGFL4, IGFL3, V_5101_LC19026_Wong et al. (2007), V_5102_LC19026_Wong et al. (2007), V_5103_LC19048_Wong et al. V_5444, V_5445, V_5446, V_5955, V_5956, V_5957, V_7204, V_7205, V_7206, V_7207, V_8160, IGFL2, HIF3A, PPP5C, CCDC8, PNMAL1, PNMAL2, CALM3, PTGIR, GNG8, DACT3, PRKD2, STRN4, FKRP, SLC1A5, AP2S1, GRLF1, NPAS1, TMEM160, (2007), V_5104_LC19056_Wong et al. (2007) V_8163, V_8872, V_8873, V_9307, V_9308, V_9309, V_9310, V_9795, V_9796, V_9797, V_9798, ZC3H4, SAE1, BBC3, CCDC9, C5AR1, GPR77, DHX34, MEIS3, SLC8A2, KPTN, NAPA, ZNF541, GLTSCR1, EHD2, GLTSCR2, SEPW1, TPRX1, CRX, V_9799, V_9800, V_9801, V_9802, V_10555, V_10556, V_10557, V_10558, V_10559, V_10560, SULT2A1, BSPH1, ELSPBP1, CABP5, CABP3, PLA2G4C, LIG1, C19orf68, CARD8, ZNF114, CCDC114, EMP3, TMEM143, SYNGR4, KDELR1, GRIN2D, V_10561, V_10562, V_23223, V_23236, V_23565, V_23566, V_23567 GRWD1, KCNJ14, CYTH2, LMTK3, SULT2B1, FAM83E, SPACA4, RPL18, SPHK2, DBP, CA11, NTN5, FUT2, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21, BCAT2, HSD17B14, PLEKHA4, PPP1R15A, TULP2, NUCB1, DHDH, BAX, FTL, GYS1, RUVBL2, LHB, CGB, CGB2, CGB1, NTF6B, CGB5, CGB8, CGB7, NTF4, KCNA7, SNRNP70, LIN7B, C19orf73, PPFIA3, HRC, TRPM4, SLC6A16, CD37, TEAD2, DKKL1, CCDC155, PTH2, SLC17A7, PIH1D1, ALDH16A1, 20 q11.21-q11.23 31418410 35246179 8% MAPRE1, EFCAB8, SPAG4L, BPIL1, BPIL3, C20orf185, C20orf186, C20orf70, C20orf71, PLUNC, C20orf114, CDK5RAP1, SNTA1, CBFA2T2, NECAB3, hsa-mir-644, hsa-mir-499, hsa-mir-1289-1 V_5134_LC19585_Wong et al. (2007), V_5135_LC19601_Wong et al. (2007) V_5134, V_5135, V_6092, V_6093, V_6094, V_6095, V_6096, V_6097, V_7911, V_22513, V_23011, 19 4 27 0 C20orf144, C20orf134, E2F1, PXMP4, ZNF341, CHMP4B, RALY, EIF2S2, AHCY, ASIP, ITCH, DYNLRB1, MAP1LC3A, PIGU, TP53INP2, NCOA6, GGT7, V_23624 ACSS2, GSS, MYH7B, TRPC4AP, EDEM2, PROCR, EIF6, MMP24, FAM83C, UQCC, GDF5OS, GDF5, CEP250, C20orf173, ERGIC3, SPAG4, CPNE1, ROMO1, RBM39, PHF20, SCAND1, C20orf152, EPB41L1, C20orf4, DLGAP4, MYL9, TGIF2, C20orf24, SLA2 20 q11.23 35429656 36010538 8% C20orf117, C20orf118, SAMHD1, RBL1, C20orf132, RPN2, GHRH, MANBAL, SRC V_5136_LC19617_Wong et al. (2007) V_3216, V_5136, V_6098, V_10580 19 4 27 0 20 q11.23 36538922 37073353 14% VSTM2L, KIAA0406, RPRD1B, TGM2, KIAA1755, BPI, LBP V_3217, V_4101 17 6 26 1 20 q13.12 43208260 44029356 20% PKIG, ADA, WISP2, KCNK15, RIMS4, YWHAB, PABPC1L, TOMM34, STK4, KCNS1, WFDC5, WFDC12, PI3, SEMG1, SEMG2, SLPI, MATN4, RBPJL, SDC4, V_6113, V_7306, V_7307, V_7860, V_9320, V_9321 15 8 25 2 SYS1, TP53TG5 20 q13.12-q13.13 45578486 47662568 18% EYA2, ZMYND8, NCOA3, SULF2, PREX1, ARFGEF2 V_2251_LC19741_Locke et al. (2006), V_5139_LC19754_Wong et al. (2007) V_0538, V_0539, V_0540, V_1996, V_2251, V_4103, V_5139, V_6114, V_6115, V_7309, V_22989, 15 8 25 2 V_23627, V_23628 20 q13.13 47735572 48725304 16% STAU1, DDX27, ZNFX1, KCNB1, PTGIS, B4GALT5, SLC9A8, SPATA2, RNF114, SNAI1, TMEM189 V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007) V_5140, V_5141 16 7 26 1 20 q13.31-q13.32 55161128 56611504 18% TFAP2C, BMP7, SPO11, RAE1, RBM38, CTCFL, PCK1, ZBP1, PMEPA1 V_4104, V_6126, V_7312 15 8 26 1