Acta Protozoologica
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Zoologica Scripta
中国科技论文在线 http://www.paper.edu.cn Zoologica Scripta Molecular phylogeny of three ambiguous ciliate genera: Kentrophoros, Trachelolophos and Trachelotractus (Alveolata, Ciliophora) SHAN GAO,MICHAELA C. STRU¨ DER-KYPKE,KHALED A. S. AL-RASHEID,XIAOFENG LIN &WEIBO SONG Submitted: 12 May 2009 Gao, S., Stru¨der-Kypke, M.C., Al-Rasheid, K.A.S., Lin, X. & Song, W. (2010). Molecular Accepted: 31 October 2009 phylogeny of three ambiguous ciliate genera: Kentrophoros, Trachelolophos and Trachelotractus doi:10.1111/j.1463-6409.2010.00416.x (Alveolata, Ciliophora).—Zoologica Scripta, 39, 305–313. Very few molecular studies on the phylogeny of the karyorelictean ciliates have been car- ried out because data of this highly ambiguous group are extremely scarce. In the present study, we sequenced the small subunit ribosomal RNA genes of three morphospecies rep- resenting two karyorelictean genera, Kentrophoros, Trachelolophos, and one haptorid, Trache- lotractus, isolated from the South and East China Seas. The phylogenetic trees constructed using Bayesian inference, maximum likelihood, maximum parsimony and neighbor-joining methods yielded essentially similar topologies. The class Karyorelictea is depicted as a monophyletic clade, closely related to the class Heterotrichea. The generic concept of the family Trachelocercidae is confirmed by the clustering of Trachelolophos and Tracheloraphis with high bootstrap support; nevertheless, the order Loxodida is paraphyletic. The transfer of the morphotype Trachelocerca entzi Kahl, 1927 to the class Litostomatea and into the new haptorid genus Trachelotractus, as suggested by previous researchers based on morpho- logical studies, is consistently supported by our molecular analyses. In addition, the poorly known species Parduczia orbis occupies a well-supported position basal to the Geleia clade, justifying the separation of these genera from one another. -
A Redescription of Remanella Multinucleata (Kahl, 1933) Nov
Europ. .J. Protistol. 32,234-250 (1.996) European Journal of Mav 31, 1996 PROTISTOLOGY A Redescription of Remanella multinucleata (Kahl, 1933) nov. gen., nov. comb. (Ciliophora, Karyorelictea), Emphasizing the lnfraciliature and Extrusomes Wilhelm Foissner Universität Salzburg, lnstitut für Zoologie, Salzburg, Austria SUMMARY The morphology, infraciliature, and extrusomes of Remanella mwbinwcleata (Kahl, 1933) nov. comb. were studied in live cells, in protargol impregnated specimens, and with the scanning electron microscope. The entire somatic and oral infraciliature consists of diki- netids which have both basal bodies ciliated or only the anterior or posterior ones, de- pending on the region of the cell. The right side is densely ciliated. Its most remarkable specialization is a kinety which extends on the dorsolateral margin from mid-body to the tail, where the kinetids become condensed and associated with conspic- uous fibres originating from the ciliated anterior basal bodies. The left side seemingly has two ciliary rows extending along the cell margins. Flowever, detailed analysis showed that these rows arevery likely a single kinety curving around the cell. The oral infraciliature of Remanella isverysimilartothat of Loxodes spp.,i.e.consistsof fourhighlyspecialized and specifically arranged kineties, whose structure is described in detail. Previous inves- tigations could not determine whether or how the nematocyst-like extrusomes of Rema- nella are extruded. The present study shows that they are discharged, thereby assuming a unique, drumstick-like shape because the roundish extrusome capsule remains attached to the despiralized filament. The data emphasize the close relationship between Remanella and Loxodes, earlier proposed by Kahl, and suggest that they emerged from a common ancestor which looked similar to a present day L oxodes. -
Classification of the Phylum Ciliophora (Eukaryota, Alveolata)
1! The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised 2! Classification of the Phylum Ciliophora (Eukaryota, Alveolata) 3! 4! Feng Gao a, Alan Warren b, Qianqian Zhang c, Jun Gong c, Miao Miao d, Ping Sun e, 5! Dapeng Xu f, Jie Huang g, Zhenzhen Yi h,* & Weibo Song a,* 6! 7! a Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao, 8! China; b Department of Life Sciences, Natural History Museum, London, UK; c Yantai 9! Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China; d 10! College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China; 11! e Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystem, 12! Xiamen University, Xiamen, China; f State Key Laboratory of Marine Environmental 13! Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, 14! China; g Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China; h 15! School of Life Science, South China Normal University, Guangzhou, China. 16! 17! Running Head: Phylogeny and evolution of Ciliophora 18! *!Address correspondence to Zhenzhen Yi, [email protected]; or Weibo Song, 19! [email protected] 20! ! ! 1! Table S1. List of species for which SSU rDNA, 5.8S rDNA, LSU rDNA, and alpha-tubulin were newly sequenced in the present work. ! ITS1-5.8S- Class Subclass Order Family Speicies Sample sites SSU rDNA LSU rDNA a-tubulin ITS2 A freshwater pond within the campus of 1 COLPODEA Colpodida Colpodidae Colpoda inflata the South China Normal University, KM222106 KM222071 KM222160 Guangzhou (23° 09′N, 113° 22′ E) Climacostomum No. -
The Infraciliature of Cryptopharynx Setigerus KAHL, 1928 and Apocryptopharynx Hippocampoides Nov
Arch. Protistenkd. 146 (1995/96): 309-327 ARCHIV © by Gustav Fischer Verlag Jena FUR PROTISTEN KUNDE The Infraciliature of Cryptopharynx setigerus KAHL, 1928 and Apocryptopharynx hippocampoides nov. gen., nov. spec. (Ciliophora, Karyorelictea), with an Account on Evolution in Loxodid Ciliates WILHELM FOISSNER Universitat Salzburg, Institut fOr Zoologie, Salzburg, Austria Summary: The morphology and infraciliature of Cryptopharynx setigerus KAHL, 1928, Cryp topharynx spp., and Apocryptopharynx hippocampoides nov. gen., nov. spec. were studied in live and protargol impregnated specimens. The entire somatic and oral infraciliature consists of dikinetids which have both or only the anterior basal bodies ciliated, depending on the region of the cell. The right side is densely ciliated. Its most remarkable specialization is a kinety which extends on the dorsolateral margin from mid-body along the broadly rounded posterior end to the postoral ventral surface. The left side bears a single ciliary row which extends along the cell margins, i.e. is almost circular. The oral infraciliatures of Cryptopharynx and Apocryptopharynx are, like the somatic infraciliatures, very similar to those of Loxodes and Remanella, i.e. consist of two specialized buccal kineties which extend along the right, anterior, and left margin of the buccal overture. These kineties form a paroral ciliature and very likely evolved from somatic cil iary rows, providing support for SMALL'S hypothesis that the oral ciliature of the ciliates is of somatic origin. An intrabuccal kinety extends within the buccal cavity; possibly, it is part of the left lateral ciliature and would then be an adoral. The intrabuccal kinety is slightly curved in Cryptopharynx and clip-shaped elongated in Apocryptopharynx hippocampoides and C. -
Multi-Marker Molecular Characterization of Ciliates and Their Endosymbionts
Facoltà di Scienze Matematiche, Fisiche e Naturali Corso di Laurea Magistrale in Conservazione ed Evoluzione Tesi di Laurea Magistrale Multi-marker molecular characterization of ciliates and their endosymbionts Candidato Vittorio Boscaro Relatore Dott. Giulio Petroni Correlatori Prof. Alberto Castelli Prof. Sergei Fokin Anno Accademico 2010/2011 "!#$%&'()*+&$(%#!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!, "!"!#+$-$.&/0#.%)#&1/$'#/%)(0234$(%&0#!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!5 !"!"!"#$%&'#(%)*$#%+#$,&-.%$.$#""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""/ !"!"0"#1'+')23#4'256)'$#2+*#$,$5'&25.7$#%4#7.3.25'$#""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""8 !"!"9"#'7%3%1,#%4#7.3.25'$#""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""": !"!"/"#-275').23#'+*%$,&-.%+5$#%4#7.3.25'$#"""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""; "!6!#3(-/+*-.'#3.'7/'0#!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"6 !"0"!"#5<'#&635.=&2)>')#7<2)275').?25.%+#"""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""!0 !"0"0"#+673'2)#))+2#1'+'#$'@6'+7'$#""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""!8 !"0"9"#7%A!#1'+'#$'@6'+7'#""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""!B -
The Free-Living Ciliates of the Mexican Gulf Coast Near Port Aransas City and Its Suburbs (South Texas, USA)
Protistology 5 (2/3), 101–130 (2007/8) Protistology The free-living ciliates of the Mexican Gulf coast near Port Aransas city and its suburbs (South Texas, USA) Ilham Alekperov 1, Edward Buskey 2 and Nataly Snegovaya 1 1 Institute of Zoology, NAS of Azerbaijan, Baku, Azerbaijan 2 University of Texas, Marine Sciences Institute, Port Aransas, Texas, USA Summary Free-living ciliates of the Mexican Gulf coast near Port Aransas city and its suburbs were studied. A total of 28 species of marine ciliates found in psammon, periphyton and plankton were measured and identified. Six new species are established: Holophrya portaransasii sp. n., Zosterodasys texensis sp. n., Z.minor sp. n., Strombidinopsis magna sp. n., Paratontonia mono- nucleata sp. n., Euplotes minor sp. n. All descriptions (6 new and 22 most characteristic species) are based on live observations, morphometric analysis, protargol and silver nitrate impregna- tions. Key words: Ciliophora, Mexican Gulf, psammon, periphyton, plankton Introduction Material and Methods The Gulf of Mexico has been known as a very A total of twenty-seven samples were collected rich region in biological production where free-liv- from different points of the Mexican Gulf coast near ing ciliates play an important role as a food reserve Port Aransas city and its suburbs in September 2005 for animals consuming protozoa. Free-living ciliates (see map). Ten samples of marine psammon (fine of the Gulf of Mexico have been studied mainly in sand) as well as ten samples of periphyton from coast its eastern part near Florida (Borror, 1963) and es- stones were collected on the supralittoral part of the pecially from coastal waters near Kingston Harbor, Gulf beaches and ship channel near Port Aransas city Jamaica (Gilron and Lynn, 1989; Gilron at al., 1991; and its suburbs. -
Morphology and Molecular Phylogeny of Two Little-Known Species of Loxodes, L
J. Ocean Univ. China (Oceanic and Coastal Sea Research) https://doi.org/10.1007/s11802-019-3897-3 ISSN 1672-5182, 2019 18 (3): 643-653 http://www.ouc.edu.cn/xbywb/ E-mail:[email protected] Morphology and Molecular Phylogeny of Two Little-Known Species of Loxodes, L. kahli Dragesco & Njiné, 1971 and L. rostrum Müller, 1786 (Protist, Ciliophora, Karyorelictea) WANG Lun, QU Zhishuai, LI Song, and HU Xiaozhong* Institute of Evolution and Marine Biodiversity, Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China (Received April 26, 2018; revised May 2, 2018; accepted December 5, 2018) © Ocean University of China, Science Press and Springer-Verlag GmbH Germany 2019 Abstract The morphology and phylogeny of two little-known species, Loxodes kahli Dragesco & Njiné, 1971 and L. rostrum Müller, 1786, isolated from freshwater muddy sediments in China, were investigated based on live features, infraciliature, and small subunit ribosomal DNA (SSU rDNA) sequence data. Loxodes kahli is distinguished from its congeners mainly by the num- ber and arrangement of macronuclei (6–17 in one row) and the number of right somatic ciliary rows (11–26). The Chinese popula- tions of L. kahli also exhibit differences with other populations in terms of the body size and the number of right ciliary rows. The characteristics of L. rostrum are consistent with those of previous studies except for the number of right ciliary rows (9–10). The studied species were redefined based on the new information and previous descriptions. This study also gave a brief morphological summary of the species in the genus Loxodes by an identification key. -
Programme & Abstracts ISOP Online Meeting 26 – 30 July 2021
Programme & Abstracts ISOP online meeting 26 – 30 July 2021 2 Dear ISOP 2021 participants, Welcome to the 2021 meeting of the International Society of Protistologists (ISOP). While we cannot meet in person because of the COVID-19 pandemic, we can meet as a society online to share our recent research. The invited talks will be by Johan Decelle (CNRS-University of Grenoble Alps, France) and Anna Karnkowska (University of Warsaw, Poland). There will be a past ISOP president's address by Christopher Lane (University of Rhode Island, USA). Forty-five contributed talks will be presented across seven sessions representing the themes of current protistan research. And twenty-three contributed posters will be presented in a single session. The talks and posters will be presented on Zoom. After each contributed talk session and during the coffee breaks, the speakers will have their own breakout room so that you can continue discussing their research with them. During the poster session, each presenter will have their own breakout room, where they show their poster and you can ask them questions. Thanks to Corey Holt (University of British Columbia, Canada) for designing the meeting’s logo. Kind regards, Micah Dunthorn 3 Contents Organizing Committee 4 Programme Overview 5 Meeting Programme 6 Invited Talks 15 Contributed Talks 19 Posters 65 4 Organizing Committee HOST Micah Dunthorn University of Oslo Norway SCIENTIFIC ADVISORY BOARD Laura Eme Université Paris-Sud France Gordon Lax University of British Columbia Canada Wei Miao Chinese Academy of Sciences People's Republic of China David Montagnes University of Liverpool United Kingdom Sonja Rueckert Edinburgh Napier University United Kingdom Agnes Weiner NORCE Climate & Bjerknes Centre for Climate Research Norway 5 Programme Overview Note: Time is in Greenwich Mean Time (GMT). -
Protozoologica (1994) 33: 1 - 51
Acta Protozoologica (1994) 33: 1 - 51 ¿ i U PROTOZOOLOGICA k ' $ ; /M An Interim Utilitarian (MUser-friendlyM) Hierarchical Classification and Characterization of the Protists John O. CORLISS Albuquerque, N ew Mexico, USA Summary. Continuing studies on the ultrastructure and the molecular biology of numerous species of protists are producing data of importance in better understanding the phylogenetic interrelationships of the many morphologically and genetically diverse groups involved. Such information, in turn, makes possible the production of new systems of classification, which are sorely needed as the older schemes become obsolete. Although it has been clear for several years that a Kingdom PROTISTA can no longer be justified, no one has offered a single and compact hierarchical classification and description of all high-level taxa of protists as widely scattered members of the entire eukaryotic assemblage of organisms. Such a macrosystem is proposed here, recognizing Cavalier-Smith’s six kingdoms of eukaryotes, five of which contain species of protists. Some 34 phyla and 83 classes are described, with mention of included orders and with listings of many representative genera. An attempt is made, principally through use of well-known names and authorships of the described taxa, to relate this new classification to past systematic treatments of protists. At the same time, the system will provide a bridge to the more refined phylogenetically based arrangements expected by the turn of the century as future data (particularly molecular) make them possible. The present interim scheme should be useful to students and teachers, information retrieval systems, and general biologists, as well as to the many professional phycologists, mycologists, protozoologists, and cell and evolutionary biologists who are engaged in research on diverse groups of the protists, those fascinating "lower" eukaryotes that (with important exceptions) are mainly microscopic in size and unicellular in structure. -
The Infraciliature of Cryptopharynx Setigerus KAHL
Arch. Protistenkd. 146 (1995/96): 309-327 ARCHIV © by Gustav Fischer Verlag Jena FÜR PROTISTEN KUNDE The lnfraciliature of Cryptopharynxsetigerus KAHL, 1928 and Apocryptopharynxhippocampoides nov. gen., nov. spec. (Ciliophora, Karyorelictea), with an Account on Evolution in Loxodid Ciliates WILHELM FOISSNER Universität Salzburg, Institut für Zoologie, Salzburg, Austria Summary: The morphology and infraciliature of Cryptopharynx setigerus KAHL, 1928, Cryp topharynx spp., and Apocryptopharynx hippocampoides nov. gen., nov. spec. were studied in live and protargol impregnated specimens. The entire somatic and oral infraciliature consists of dikinetids which have both or only the anterior basal bodies ciliated, depending on the region of the cell. The right side is densely ciliated. lts most remarkable specialization is a kinety which extends on the dorsolateral margin from mid-body along the broadly rounded posterior end to the pastoral ventral surface. The left side bears a single ciliary row which extends along the cell margins, i.e. is almest circular. The oral infraciliatures of Cryptopharynxand Apocryptopharynx are, like the somatic infraciliatures, very similar to those of Loxodes and Remanella, i.e. consist of two specialized buccal kineties which extend along the right, anterior, and left margin of the buccal overture. These kineties form a paroral ciliature and very likely evolved from somatic cil iary rows, providing support for SMALL's hypothesis that the oral ciliature of the ciliates is of somatic origin. An intrabuccal kinety extends within the buccal cavity; possibly, it is part of the left lateral ciliature and would then be an adoral. The intrabuccal kinety is slightly curved in Cryptopharynxand clip-shaped elongated in Apocryptopharynx hippocampoides and C. -
Unusual Features of Non-Dividing Somatic Macronuclei in the Ciliate Class Karyorelictea
Available online at www.sciencedirect.com ScienceDirect European Journal of Protistology 61 (2017) 399–408 REVIEW Unusual features of non-dividing somatic macronuclei in the ciliate class Karyorelictea a,b b a b,c,∗ Ying Yan , Anna J. Rogers , Feng Gao , Laura A. Katz a Laboratory of Protozoology, Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China b Department of Biological Sciences, Smith College, Northampton, MA 01063, USA c Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, MA 01003, USA Available online 22 May 2017 Abstract Genome structure and nuclear organization have been intensely studied in model ciliates such as Tetrahymena and Paramecium, yet few studies have focused on nuclear features of other ciliate clades including the class Karyorelictea. In most ciliates, both the somatic macronuclei and germline micronuclei divide during cell division and macronuclear development only occurs after conjugation. However, the macronuclei of Karyorelictea are non-dividing (i.e. division minus (Div−)) and develop anew from micronuclei during each asexual division. As macronuclei age within Karyorelictea, they undergo changes in morphology and DNA content until they are eventually degraded and replaced by newly developed macronuclei. No less than two macronuclei and one micronucleus are present in karyorelictid species, which suggests that a mature macronucleus 1) might be needed to sustain the cell while a new macronucleus is developing and 2) likely plays a role in guiding the development of the new macronucleus. Here we use a phylogenetic framework to compile information on the morphology and development of nuclei in Karyorelictea, largely relying on the work of Dr. -
A Redescription of Remanella Multinucleata (Kahl, 1933) Nov
Europ. J. Protistol. 32,234-250 (1996) European Journal of May 31, 1996 PROTISTOLOGY A Redescription of Remanella multinucleata (Kahl, 1933) nov. gen., nov. comb. (Ciliophora, Karyorelictea), Emphasizing the Infraciliature and Extrusomes Wilhelm Foissner Universitat Salzburg, Institut fOrZoologie, Salzburg, Austria SUMMARY The morphology, infraciliature, and extrusomes of Remanella multinucleata (Kahl, 1933) nov. comb. were studied in live cells, in protargol impregnated specimens, and with the scanning electron microscope. The entire somatic and oral infraciliature consists of diki netids which have both basal bodies ciliated or only the anterior or posterior ones, de pending on the region of the cell. The right side is densely ciliated. Its most remarkable specialization is a kinety which extends on the dorsolateral margin from mid-body to the tail, where the kinetids become condensed and associated with conspic uous fibres originating from the ciliated anterior basal bodies. The left side seemingly has two ciliary rows extending along the cell margins. However, detailed analysis showed that these rows are very likely a single kinety curving around the cell. The oral infraciliature of Remanella is very similar to that of Loxodes spp., i.e. consists of four highly specialized and specifically arranged kineties, whose structure is described in detail. Previous inves tigations could not determine whether or how the nematocyst-like extrusomes of Rema nella are extruded. The present study shows that they are discharged, thereby assuming a unique, drumstick-like shape because the roundish extrusome capsule remains attached to the despiralized filament. The data emphasize the close relationship between Remanella and Loxodes, earlier proposed by Kahl, and suggest that they emerged from a common ancestor which looked similar to a present day Loxodes.