Phosphorylation of Hydroxylysine Residuesin Collagen Synthesized
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Collagen and Elastin Fibres
J Clin Pathol: first published as 10.1136/jcp.s3-12.1.49 on 1 January 1978. Downloaded from J. clin. Path., 31, Suppl. (Roy. Coll. Path.), 12, 49-58 Collagen and elastin fibres A. J. BAILEY From the Agricultural Research Council, Meat Research Institute, Langford, Bristol Although an understanding of the intracellular native collagen was generated from type I pro- biosynthesis of both collagen and elastin is of collagen. Whether this means that the two pro- considerable importance it is the subsequent extra- collagens are converted by different enzyme systems cellular changes involving fibrogenesis and cross- and the type III enzyme was deficient in these linking that ensure that these proteins ultimately fibroblast cultures, or that the processing of pro become the major supporting tissues of the body. type III is extremely slow, is not known. The latter This paper summarises the formation and stability proposal is consistent with the higher proportion of collagen and elastin fibres. of soluble pro type III extractable from tissue (Lenaers and Lapiere, 1975; Timpl et al., 1975). Collagen Basement membrane collagens, on the other hand, do not form fibres and this property may be The non-helical regions at the ends of the triple due to the retention of the non-helical extension helix of procollagen probably provide a number of peptides (Kefalides, 1973). In-vivo biosynthetic different intracellular functions-that is, initiating studies showing the absence of any extension peptide rapid formation of the triple helix; inhibiting intra- removal support this (Minor et al., 1976), but other cellular fibrillogenesis; and facilitating transmem- workers have reported that there is some cleavage brane movement. -
01. Amino Acids
01. Amino Acids 1 Biomolecules • Protein • Carbohydrate • Nucleic acid • Lipid 2 peptide polypeptide protein di-, tri-, oligo- 3 4 fibrous proteins proteins globular proteins 5 Figure 4.1 Anatomy of an amino acid. Except for proline and its derivatives, all of the amino acids commonly found in proteins possess this type of structure. 6 Glycine (Gly, G) Alanine (Ala, A) Valine (Val, V)* Leucine (Leu, L)* Isoleucine (Ile. I)* 7 Serine (Ser, S) Threonine (Thr, T)* Cysteine (Cys, C)cystine Methionine (Met, M)* 8 Aspartate (Asp, D) Glutamate (Glu, E) Asparagine (Asn, N) Glutamine (Gln, Q) 9 Lysine (Lys, K)* Arginine (Arg, R)* 10 Phenylalanine (Phe, F)* Tyrosine (Tyr, Y) Histidine (His, H)* Tryptophan (Trp, W)* 11 Proline (Pro, P) 12 Hydrophobic (A, G, I, L, F, V, P) Hydrophilic (D, E, R, S, T, C, N, Q, H) Amphipathic (K, M, W, Y) 13 Essential amino acids: V, L, I, T, M, K, R, F, H, W 14 Several Amino Acids Occur Rarely in Proteins We'll see some of these in later chapters • Selenocysteine in many organisms • Pyrrolysine in several archaeal species • Hydroxylysine, hydroxyproline - collagen • Carboxyglutamate - blood-clotting proteins • Pyroglutamate – in bacteriorhodopsin • GABA, epinephrine, histamine, serotonin act as neurotransmitters and hormones • Phosphorylated amino acids – a signaling device Several Amino Acids Occur Rarely in Proteins Several Amino Acids Occur Rarely in Proteins Figure 4.4 (b) Some amino acids are less common, but nevertheless found in certain proteins. Hydroxylysine and hydroxyproline are found in connective-tissue proteins; carboxy- glutamate is found in blood-clotting proteins; pyroglutamate is found in bacteriorhodopsin (see Chapter 9). -
Collagen Structural Microheterogeneity and a Possible Role for Glycosylated Hydroxylysine in Type 1 Collagen
Proc. NatL Acad. Sci. USA Vol. 79, pp. 7684-7688, December 1982 Biochemistry Collagen structural microheterogeneity and a possible role for glycosylated hydroxylysine in type 1 collagen (nonreducible stable crosslinks/hydroxyaldolhistidine/specific cleavage/molecular location) MITSUO YAMAUCHI*t, CLAUDIA NOYES*t, YOSHINORI KUBOKI*t, AND GERALD L. MECHANIC*§¶ *Dental Research Center, §Department of Biochemistry and Nutrition, and tDepartment of Medicine, University of North Carolina, Chapel Hill, North Carolina 27514 Communicated by. Ernest L. Eliel, September 20, 1982 ABSTRACT A three-chained peptide from type I collagen, and Mechanic (8) that dehydro-HisOHMerDes, which was crosslinked by hydroxyaldolhistidine, has been isolated from a thought to be artifactual (9, 10) is a true crosslink in collagen tryptic digest of5 M guanidine HCI-insoluble bovine skin collagen fibrils. Bernstein and Mechanic found that one HisOHMerDes (a small but as yet unknown percentage of the total collagen in crosslink was present per molecule of collagen in freshly re- whole skin). Os04/NaIO4 specifically cleaved the crosslink at its constituted soluble collagen fibrils. double bond into a two-chained crosslink peptide and a single pep- Histidine was also found to be a constituent of the stable tide. The sequence of the two-chained peptide containing the bi- nonreducible trifunctional crosslink hydroxyaldolhistidine functional crosslink was determined after amino acid analysis of (OHAlHis), whose structure was elucidated by PMR and mass the separated peptides. The crosslink consists of an aldehyde de- spectrometry rived from hydroxylysine-87 in the aldehyde-containing cyanogen (11). OHAIHis was isolated from bovine skin col- bromide fragment alCB5ald and an aldehyde derived from the lagen. -
United States Patent (19) 11 Patent Number: 5,874,589 Campbell Et Al
USOO5874589A United States Patent (19) 11 Patent Number: 5,874,589 Campbell et al. 45) Date of Patent: Feb. 23, 1999 54 METHODS FOR SYNTHESIZING DIVERSE El Marini et al., 1992, Synthesis pp. 1104-1108 Synthesis of COLLECTIONS OF TETRAMIC ACIDS AND enantiomerically pure B-and Y-amino acids from aspartic DERVATIVES THEREOF and glutamic acid derivatives. Evans et al., 1982, J. Amer. Chem. Soc. 104: 1737–1739 75 Inventors: David A. Campbell, San Mateo; Todd Asymmetric alkylation reactions of chiral imide enolates. A T. Romoff, San Jose, both of Calif. practical approach to the enantioselective Synthesis of C-Substituted carboxylic acid derivatives. 73 Assignee: GlaxoWellcome, Inc., Research Fontenot et al., 1991, Peptide Research, 4: 19-25A Survey Triangle Park, N.C. of potential problems and qulaity control in peptide Synthe sis by the flourenylmethocvarbonyl procedure. 21 Appl. No.: 896,799 Giesemann et al., 1982, J. Chem. Res. (S) pp. 79 Synthesis 22 Filed: Jul.18, 1997 of chiral C-isocyano esters and other base-Sensitive isocya nides with 51) Int. Cl. ........................ C07D 211/40; CO7D 207/00 oxomethylenebis-(3H-Imidazolium)Bis(methanesulphonate), 52 U.S. Cl. ............ ... 548/540; 546/220; 548/539 a versatile dehydrating reagent. 58 Field of Search ............................. 546/220; 548/539, Geysen et al., 1987, J. Immunol. Meth. 102: 259-274 548/540 Strategies for epitope analysis using peptide Synthesis. Giron-Forest et al., 1979, Analytical Profiles of Drug Sub 56) References Cited stances, 8: 47-81 Bromocriptine methaneSulphonate. U.S. PATENT DOCUMENTS Gokeletal, 1971, Isonitrile Chemistry, Ugi, I. ed., Academic 3,299.095 1/1967 Harris et al. -
Ihyd-Pseaac: Predicting Hydroxyproline and Hydroxylysine in Proteins by Incorporating Dipeptide Position-Specific Propensity Into Pseudo Amino Acid Composition
Int. J. Mol. Sci. 2014, 15, 7594-7610; doi:10.3390/ijms15057594 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article iHyd-PseAAC: Predicting Hydroxyproline and Hydroxylysine in Proteins by Incorporating Dipeptide Position-Specific Propensity into Pseudo Amino Acid Composition Yan Xu 1,5,*, Xin Wen 1, Xiao-Jian Shao 2, Nai-Yang Deng 3 and Kuo-Chen Chou 4,5 1 Department of Information and Computer Science, University of Science and Technology Beijing, Beijing 100083, China; E-Mail: [email protected] 2 Department of Mathematics and Information Science, Binzhou University, Binzhou 256603, China; E-Mail: [email protected] 3 College of Science, China Agricultural University, Beijing 100083, China; E-Mail: [email protected] 4 Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 21589, Saudi Arabia; E-Mail: [email protected] 5 Gordon Life Science Institute, Boston, MA 02478, USA * Author to whom correspondence should be addressed; E-Mail: [email protected] or [email protected]; Tel./Fax: +86-10-6233-2589. Received: 7 February 2014; in revised form: 4 April 2014 / Accepted: 17 April 2014 / Published: 5 May 2014 Abstract: Post-translational modifications (PTMs) play crucial roles in various cell functions and biological processes. Protein hydroxylation is one type of PTM that usually occurs at the sites of proline and lysine. Given an uncharacterized protein sequence, which site of its Pro (or Lys) can be hydroxylated and which site cannot? This is a challenging problem, not only for in-depth understanding of the hydroxylation mechanism, but also for drug development, because protein hydroxylation is closely relevant to major diseases, such as stomach and lung cancers. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Lysyl-Protocollagen Hydroxylase Deficiency in Fibroblasts from Siblings with Hydroxylysine-Deficient Collagen
Proc. Nat. Acad. Sci. USA Vol. 69, No. 10, pp. 2899-2903, October 1972 Lysyl-Protocollagen Hydroxylase Deficiency in Fibroblasts from Siblings with Hydroxylysine-Deficient Collagen (prolyl-protocollagen hydroxylase/connective tissue/inborn error/crosslinks) S. M. KRANE, S. R. PINNELL, AND R. W. ERBE Departments of Medicine, Dermatology, and Pediatrics, Harvard Medical School and the Medical, Dermatology, and Children's Services, Massachusetts General Hospital, Boston, Massachusetts 02114 Communicated by E. R. Blout, July 31, 1972 ABSTRACT Cell culture studies were performed on were normal. The hydroxylysine content of dermis was also members of a family in which two sisters, ages 9 and 12, normal in three patients, each with the Marfan and Ehlers- have a similar disorder characterized clinically by severe scoliosis, joint laxity and recurrent dislocations, hyper- Danlos syndromes. Collagen from the skin of the affected extensible skin, and thin scars. The skin collagen from the children was more soluble in denaturing solvents than that sisters was markedly deficient in hydroxylysine, but other derived from controls (4), consistent with a defect in cross- amino acids were present in normal amounts. Hydroxy- linking of collagen molecules, a process in which hydroxylysine lysine in collagen from fascia and bone was reduced to a to involved lesser extent. Since the most likely explanation for the has been thought be critically (2, 5-8). Hydroxyly- hydroxylysihie deficiency was a reduction in enzymatic sine per se is not used in collagen biosynthesis; specific lysyl hydroxylation of lysine residues in protocollagen, we mea- residues are hydroxylated after their incorporation into the sured the activity of lysyl-protocollagen hydroxylase in polypeptide chains of protocollagen (9-12). -
1/05661 1 Al
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date _ . ... - 12 May 2011 (12.05.2011) W 2 11/05661 1 Al (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every C12Q 1/00 (2006.0 1) C12Q 1/48 (2006.0 1) kind of national protection available): AE, AG, AL, AM, C12Q 1/42 (2006.01) AO, AT, AU, AZ, BA, BB, BG, BH, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, DO, (21) Number: International Application DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, PCT/US20 10/054171 HN, HR, HU, ID, IL, IN, IS, JP, KE, KG, KM, KN, KP, (22) International Filing Date: KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, 26 October 2010 (26.10.2010) ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PE, PG, PH, PL, PT, RO, RS, RU, SC, SD, (25) Filing Language: English SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, (26) Publication Language: English TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (30) Priority Data: (84) Designated States (unless otherwise indicated, for every 61/255,068 26 October 2009 (26.10.2009) US kind of regional protection available): ARIPO (BW, GH, GM, KE, LR, LS, MW, MZ, NA, SD, SL, SZ, TZ, UG, (71) Applicant (for all designated States except US): ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, MD, RU, TJ, MYREXIS, INC. -
Comparison of Gene Expression Profile of the Spinal Cord Of
Tsujioka and Yamashita BMC Genomics (2019) 20:619 https://doi.org/10.1186/s12864-019-5974-9 RESEARCHARTICLE Open Access Comparison of gene expression profile of the spinal cord of sprouting-capable neonatal and sprouting-incapable adult mice Hiroshi Tsujioka1,2 and Toshihide Yamashita1,2,3,4* Abstract Background: The regenerative ability of severed axons in the central nervous system is limited in mammals. However, after central nervous system injury, neural function is partially recovered by the formation of a compensatory neural circuit. In a mouse pyramidotomy model, axonal sprouting of the intact side of the corticospinal tract is observed in the spinal cord, and the axons make new synapses with the denervated side of propriospinal neurons. Moreover, this sprouting ability is enhanced in neonatal mice compared to that in adult mice. Myelin-associated molecules in the spinal cord or intrinsic factors in corticospinal neurons have been investigated in previous studies, but the factors that determine elevated sprouting ability in neonatal mice are not fully understood. Further, in the early phase after pyramidotomy, glial responses are observed in the spinal cord. To elucidate the basal difference in the spinal cord, we compared gene expression profiles of entire C4–7 cervical cord tissues between neonatal (injured at postnatal day 7) and adult (injured at 8 weeks of age) mice by RNA-sequencing. We also tried to identify discordant gene expression changes that might inhibit axonal sprouting in adult mice at the early phase (3 days) after pyramidotomy. Results: A comparison of neonatal and adult sham groups revealed remarkable basal differences in the spinal cord, such as active neural circuit formation, cell proliferation, the development of myelination, and an immature immune system in neonatal mice compared to that observed in adult mice. -
Lysine and Novel Hydroxylysine Lipids in Soil Bacteria: Amino Acid Membrane Lipid Response to Temperature and Ph in Pseudopedobacter Saltans
Rowan University Rowan Digital Works School of Earth & Environment Faculty Scholarship School of Earth & Environment 6-1-2015 Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans Elisha Moore Rowan University Ellen Hopmans W. Irene Rijpstra Irene Sanchez Andrea Laura Villanueva See next page for additional authors Follow this and additional works at: https://rdw.rowan.edu/see_facpub Part of the Environmental Microbiology and Microbial Ecology Commons Recommended Citation Moore, E.K., Hopmans, E., Rijpstra, W.I.C., Sanchez-Andrea, I., Villanueva, L., Wienk, H., ...& Sinninghe Damste, J. (2015). Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans. Frontiers in Microbiology, Volume 6, Article 637. This Article is brought to you for free and open access by the School of Earth & Environment at Rowan Digital Works. It has been accepted for inclusion in School of Earth & Environment Faculty Scholarship by an authorized administrator of Rowan Digital Works. Authors Elisha Moore, Ellen Hopmans, W. Irene Rijpstra, Irene Sanchez Andrea, Laura Villanueva, Hans Wienk, Frans Schoutsen, Alfons Stams, and Jaap Sinninghe Damsté This article is available at Rowan Digital Works: https://rdw.rowan.edu/see_facpub/17 ORIGINAL RESEARCH published: 29 June 2015 doi: 10.3389/fmicb.2015.00637 Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans Eli K. Moore 1*, Ellen C. Hopmans 1, W. Irene C. Rijpstra 1, Irene Sánchez-Andrea 2, Laura Villanueva 1, Hans Wienk 3, Frans Schoutsen 4, Alfons J. -
Reducible Crosslinks in Hydroxylysine-Deficient Collagens of a Heritable Disorder of Connective Tissue (Skin/Bone/Cartilage/Aminoacid Analysis)
Proc. Nat. Acad. Sci. USA Vol. 69, No. 9, pp. 2594-2598, September 1972 Reducible Crosslinks in Hydroxylysine-Deficient Collagens of a Heritable Disorder of Connective Tissue (skin/bone/cartilage/aminoacid analysis) DAVID R. EYRE AND MELVIN J. GLIMCHER* Department of Orthopedic Surgery, Harvard Medical School, Children's Hospital Medical Center, Boston, Massachusetts 02115 Communicated by Francis 0. Schmitt, July 3, 1972 ABSTRACT Reducible compounds that participate don, bone, and cartilage collagens (3-11). Each tissue reveals in crosslinking were analyzed in hydroxylysine-deficient a unique distribution of these reducible crosslinks that changes collagens of patients with a heritable disorder of connec- tive tissue. After treatment with [3H1sodium borohydride, as the tissue matures and ages (8, 10). new compounds, as well as a totally different pattern of Since connective tissues of patients with this disorder are tritiated compounds, were found in hydroxylysine-de- deficient in hydroxylysine, a crosslink precursor, it seemed ficient collagen from skin as compared with age-matched likely that the reducible crosslinks would either be absent or controls. The amount of desmosines detected indicated collagen cross- that more elastin was present in abnormal skin than in abnormal. Such a deficiency or abnormality in control skin. linking might be responsible for changes in the solubility Bone collagen, which was not as deficient in hydroxy- characteristics of the collagen (1), and for changes in the lysine as skin collagen, had the same compounds as normal structural properties of the tissues and the consequent skeletal bone collagen, but their relative proportions were altered, and connective tissue abnormalities. consistent with a deficiency of hydroxylysine, a precursor of the crosslinks. -
Accepted Manuscript
Accepted Manuscript Fibrogenic Activity of MECP2 is Regulated by Phosphorylation in Hepatic Stellate Cells Eva Moran-Salvador, Marina Garcia-Macia, Ashwin Sivaharan, Laura Sabater, Marco Y.W. Zaki, Fiona Oakley, Amber Knox, Agata Page, Saimir Luli, Jelena Mann, Derek A. Mann PII: S0016-5085(19)41126-8 DOI: https://doi.org/10.1053/j.gastro.2019.07.029 Reference: YGAST 62784 To appear in: Gastroenterology Accepted Date: 17 July 2019 Please cite this article as: Moran-Salvador E, Garcia-Macia M, Sivaharan A, Sabater L, Zaki MYW, Oakley F, Knox A, Page A, Luli S, Mann J, Mann DA, Fibrogenic Activity of MECP2 is Regulated by Phosphorylation in Hepatic Stellate Cells, Gastroenterology (2019), doi: https://doi.org/10.1053/ j.gastro.2019.07.029. This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. Fibrogenic Activity of MECP2 is Regulated by Phosphorylation in Hepatic Stellate Cells ACCEPTED MANUSCRIPT Short title : Mecp2 controls myofibroblast transcriptome Eva Moran-Salvador ###, Marina Garcia-Macia ###, Ashwin Sivaharan ###, Laura Sabater, Marco Y.W. Zaki, Fiona Oakley, Amber Knox, Agata Page, Saimir Luli, Jelena Mann* and Derek A Mann*. Newcastle Fibrosis Research Group, Institute of Cellular Medicine, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.